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The map label for this gene is rpoE [H]

Identifier: 103485779

GI number: 103485779

Start: 282062

End: 282697

Strand: Reverse

Name: rpoE [H]

Synonym: Sala_0284

Alternate gene names: 103485779

Gene position: 282697-282062 (Counterclockwise)

Preceding gene: 103485782

Following gene: 103485778

Centisome position: 8.45

GC content: 67.14

Gene sequence:

>636_bases
ATGACCGCCCCCACCGCCGCTGCCTCGCAGCCGCAGGCCGACGCGCTCTCGGACAGCGAATTCAAGGCTTTGCTTGCCGG
GGTCATTCCCCATCTGCGCGCCTATGGCCGCAGCCTGTCGGGAAACCCCGACCTCGCCGACGATCTGACGCAGGACACGA
TGGTCAAGGCCTGGGCGTCGCGCGACCGGTTCGAGCGCGGAACGTCGATCAAGGCGTGGACCTTCGTGATCCTGCGCAAC
ACCTTTCTGTCGCAGATGCGCCGCAACAAGTTCGTCGGCGAATATGACGAAACCGCGGTCGAGCGCACCATATCGACCCC
CGCAAGCCAGGAAGAGAGCGGCGAGATGGCCGACGTGCAACGCGGCCTGATGGAATTGCCACAGGATCAGCGCGAGGCGC
TGATCCTCGTCGGCGCGGGCGGCATGTCGTACGAGGAGGCTGCGAGCATCTGTGATTGCGCGCTCGGCACGATGAAAAGC
CGCGTGTCACGCGCCCGCGCCGCGCTCGAGGAGATCATGGCGCGTGGCCGGTTCAGCCAGAAGCGCGCCGACGCGCCCCC
GGCGAGCGAAGCCGTCGATGCCATCATGGACAGCGTCGAGGAAATCGCCGCGCGGCGCGAGGCGGCGAACCGTTGA

Upstream 100 bases:

>100_bases
CCAAGCTGCGCATGATCTATGGCAATATCGTCGCCGAACAATTGCCCGACCGGATGCTCGACCTGCTCGCGCAGCTCGAT
CAGACCAGCCCGAAATCATA

Downstream 100 bases:

>100_bases
AATTGTCGTCGCCCCCGCGAAGACGGGGGCGACGGATGGTTTCACGCCCCTCGACAACCGACACCGCCCGCGTCACAACA
ACACCTCTTCCCCAGCCAAG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTAPTAAASQPQADALSDSEFKALLAGVIPHLRAYGRSLSGNPDLADDLTQDTMVKAWASRDRFERGTSIKAWTFVILRN
TFLSQMRRNKFVGEYDETAVERTISTPASQEESGEMADVQRGLMELPQDQREALILVGAGGMSYEEAASICDCALGTMKS
RVSRARAALEEIMARGRFSQKRADAPPASEAVDAIMDSVEEIAARREAANR

Sequences:

>Translated_211_residues
MTAPTAAASQPQADALSDSEFKALLAGVIPHLRAYGRSLSGNPDLADDLTQDTMVKAWASRDRFERGTSIKAWTFVILRN
TFLSQMRRNKFVGEYDETAVERTISTPASQEESGEMADVQRGLMELPQDQREALILVGAGGMSYEEAASICDCALGTMKS
RVSRARAALEEIMARGRFSQKRADAPPASEAVDAIMDSVEEIAARREAANR
>Mature_210_residues
TAPTAAASQPQADALSDSEFKALLAGVIPHLRAYGRSLSGNPDLADDLTQDTMVKAWASRDRFERGTSIKAWTFVILRNT
FLSQMRRNKFVGEYDETAVERTISTPASQEESGEMADVQRGLMELPQDQREALILVGAGGMSYEEAASICDCALGTMKSR
VSRARAALEEIMARGRFSQKRADAPPASEAVDAIMDSVEEIAARREAANR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=138, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22990; Mature: 22859

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPTAAASQPQADALSDSEFKALLAGVIPHLRAYGRSLSGNPDLADDLTQDTMVKAWAS
CCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RDRFERGTSIKAWTFVILRNTFLSQMRRNKFVGEYDETAVERTISTPASQEESGEMADVQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
RGLMELPQDQREALILVGAGGMSYEEAASICDCALGTMKSRVSRARAALEEIMARGRFSQ
HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
KRADAPPASEAVDAIMDSVEEIAARREAANR
HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAPTAAASQPQADALSDSEFKALLAGVIPHLRAYGRSLSGNPDLADDLTQDTMVKAWAS
CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RDRFERGTSIKAWTFVILRNTFLSQMRRNKFVGEYDETAVERTISTPASQEESGEMADVQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
RGLMELPQDQREALILVGAGGMSYEEAASICDCALGTMKSRVSRARAALEEIMARGRFSQ
HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
KRADAPPASEAVDAIMDSVEEIAARREAANR
HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]