| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is bla [H]
Identifier: 103485670
GI number: 103485670
Start: 178424
End: 179590
Strand: Direct
Name: bla [H]
Synonym: Sala_0174
Alternate gene names: 103485670
Gene position: 178424-179590 (Clockwise)
Preceding gene: 103485669
Following gene: 103485671
Centisome position: 5.33
GC content: 67.95
Gene sequence:
>1167_bases ATGAAGATTGAGTTTTCCGGCAGGCCGCTCCTCGCGATGACGATGAGCGCCGCGGTGCTCGCGGGCTGCGTCAGCAGCGC CGCCGTCATCCCGCAACCGCGCGCCCAGGCGCCGGTCGAGCAGACGTCGCAACCCCGGGCAGTTCGCGGGCCATCCGGGT CGGTGACAGTGCCGATCGGCCAGCCGGTTCCGTCGGCCATGCCGCGTCCTGCCGGACCGCTTGACCCCGGCTTTCGCCGC GCCCCCGCCGGATTGCAGGATCGTATCCATGCGTTGTGGAGCGCCTTTCCCGGCAAAACCGGAATCGCCGTGCAGCGGAT CGATGGCGAATGGACCTTGTCGCATCGCGGCGGCGACCTGTTTCCGCAGCAGAGTGTCTCGAAGCTGTGGGTCGCGCTCA CCGTGCTCGACGCCGTCGATCAGGGGCGGTTGACGCTCGATCAGCGCGTGCGCATCGGGCCTGAGGATCTGACGCTTTTC TATCAACCGATCGCGGCGCGCGTGCGCGCGGAAGGATCGGTGACGCTGAGCGTCCGCGACCTCATCGAGATTGCCATTAC GCAAAGTGACAACACAGCGAACGACAGTCTGCTGCGCACGGTCGGCGGCCCCGACGCGGTGCGGCGTTTCATCGCCAAGA AGGATCTGGGCGCGATCCGCTTCGGCCCCGGCGAGCGGCTGCTCCAGGCAGGGACCGCGGGGCTGAAGTGGCAGCAGGCC TATTCGGTTGGGCGCGCCTTTCAACAGGCACGCGCCGCGCTTCCCGATGCGACGCGGCGCGCGGCGCGCAACGCCTATCT CGCCAATCCCCCCGATGGCGCCAGCCCCACCGCGATCGCCAATGCGCTGACGCGTCTCGCGCGCGGCGCGTTGCTGTCGC CCGAATCGACCGAATATCTGCTGGGGGTGATGAGCCGGACCAAAAGCGGCCCCCGGCGCCTGAAGGCGGGGTTGCCCGCC GATTGGAAGTTCCTGCACAAGACGGGTACGGGGCAGGACTATAAGGGTTCGACAGCGGGCTATAACGACATCGGCATCGC GACCGCACCCGATGGAACGCGCTATGCCATCGTCGTCCTGCTCGGCGACACGAGCGCCCCGGTGCCCGCGCGCATGGAAC TGATGCAGGCGGTGTCGAGCGCCGTCGCGGCCTATCACGGAAAATGA
Upstream 100 bases:
>100_bases TCGTTCGTCGCAAATCGCTGGTCCGGCGTAGACGGCTGCGCGACCAACGGAGCAACCGAAGGGGTCGGGGTCATATACAG GTCGCGTGCGCGGGGTTCGA
Downstream 100 bases:
>100_bases CATCCCCATGAATCGCGCCTTGCCGCCGGCCGCCGCGCTGGTACTCCTTCTGTCGGCCTGCGCGACGCCCGAGGCGCGGC TGCGCACCGGGCTCAACAAC
Product: Beta-lactamase
Products: NA
Alternate protein names: IRT-4; Penicillinase; TEM-1; TEM-16/CAZ-7; TEM-2; TEM-24/CAZ-6; TEM-3; TEM-4; TEM-5; TEM-6; TEM-8/CAZ-2 [H]
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MKIEFSGRPLLAMTMSAAVLAGCVSSAAVIPQPRAQAPVEQTSQPRAVRGPSGSVTVPIGQPVPSAMPRPAGPLDPGFRR APAGLQDRIHALWSAFPGKTGIAVQRIDGEWTLSHRGGDLFPQQSVSKLWVALTVLDAVDQGRLTLDQRVRIGPEDLTLF YQPIAARVRAEGSVTLSVRDLIEIAITQSDNTANDSLLRTVGGPDAVRRFIAKKDLGAIRFGPGERLLQAGTAGLKWQQA YSVGRAFQQARAALPDATRRAARNAYLANPPDGASPTAIANALTRLARGALLSPESTEYLLGVMSRTKSGPRRLKAGLPA DWKFLHKTGTGQDYKGSTAGYNDIGIATAPDGTRYAIVVLLGDTSAPVPARMELMQAVSSAVAAYHGK
Sequences:
>Translated_388_residues MKIEFSGRPLLAMTMSAAVLAGCVSSAAVIPQPRAQAPVEQTSQPRAVRGPSGSVTVPIGQPVPSAMPRPAGPLDPGFRR APAGLQDRIHALWSAFPGKTGIAVQRIDGEWTLSHRGGDLFPQQSVSKLWVALTVLDAVDQGRLTLDQRVRIGPEDLTLF YQPIAARVRAEGSVTLSVRDLIEIAITQSDNTANDSLLRTVGGPDAVRRFIAKKDLGAIRFGPGERLLQAGTAGLKWQQA YSVGRAFQQARAALPDATRRAARNAYLANPPDGASPTAIANALTRLARGALLSPESTEYLLGVMSRTKSGPRRLKAGLPA DWKFLHKTGTGQDYKGSTAGYNDIGIATAPDGTRYAIVVLLGDTSAPVPARMELMQAVSSAVAAYHGK >Mature_388_residues MKIEFSGRPLLAMTMSAAVLAGCVSSAAVIPQPRAQAPVEQTSQPRAVRGPSGSVTVPIGQPVPSAMPRPAGPLDPGFRR APAGLQDRIHALWSAFPGKTGIAVQRIDGEWTLSHRGGDLFPQQSVSKLWVALTVLDAVDQGRLTLDQRVRIGPEDLTLF YQPIAARVRAEGSVTLSVRDLIEIAITQSDNTANDSLLRTVGGPDAVRRFIAKKDLGAIRFGPGERLLQAGTAGLKWQQA YSVGRAFQQARAALPDATRRAARNAYLANPPDGASPTAIANALTRLARGALLSPESTEYLLGVMSRTKSGPRRLKAGLPA DWKFLHKTGTGQDYKGSTAGYNDIGIATAPDGTRYAIVVLLGDTSAPVPARMELMQAVSSAVAAYHGK
Specific function: TEM-type are the most prevalent beta-lactamases in enterobacteria; they hydrolyze the beta-lactam bond in susceptible beta-lactam antibiotics, thus conferring resistance to penicillins and cephalosporins. TEM-3 and TEM-4 are capable of hydrolyzing cefotax
COG id: COG2367
COG function: function code V; Beta-lactamase class A
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-A beta-lactamase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR000871 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 41065; Mature: 41065
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIEFSGRPLLAMTMSAAVLAGCVSSAAVIPQPRAQAPVEQTSQPRAVRGPSGSVTVPIG CEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEECCCCCEEEECC QPVPSAMPRPAGPLDPGFRRAPAGLQDRIHALWSAFPGKTGIAVQRIDGEWTLSHRGGDL CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCC FPQQSVSKLWVALTVLDAVDQGRLTLDQRVRIGPEDLTLFYQPIAARVRAEGSVTLSVRD CCHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHH LIEIAITQSDNTANDSLLRTVGGPDAVRRFIAKKDLGAIRFGPGERLLQAGTAGLKWQQA EEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCHHHHH YSVGRAFQQARAALPDATRRAARNAYLANPPDGASPTAIANALTRLARGALLSPESTEYL HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH LGVMSRTKSGPRRLKAGLPADWKFLHKTGTGQDYKGSTAGYNDIGIATAPDGTRYAIVVL HHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE LGDTSAPVPARMELMQAVSSAVAAYHGK ECCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKIEFSGRPLLAMTMSAAVLAGCVSSAAVIPQPRAQAPVEQTSQPRAVRGPSGSVTVPIG CEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEECCCCCEEEECC QPVPSAMPRPAGPLDPGFRRAPAGLQDRIHALWSAFPGKTGIAVQRIDGEWTLSHRGGDL CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCC FPQQSVSKLWVALTVLDAVDQGRLTLDQRVRIGPEDLTLFYQPIAARVRAEGSVTLSVRD CCHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHH LIEIAITQSDNTANDSLLRTVGGPDAVRRFIAKKDLGAIRFGPGERLLQAGTAGLKWQQA EEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCHHHHH YSVGRAFQQARAALPDATRRAARNAYLANPPDGASPTAIANALTRLARGALLSPESTEYL HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH LGVMSRTKSGPRRLKAGLPADWKFLHKTGTGQDYKGSTAGYNDIGIATAPDGTRYAIVVL HHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE LGDTSAPVPARMELMQAVSSAVAAYHGK ECCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 358200; 383387; 3019092; 358199; 1331747; 2550326; 1665171; 1416873; 8056282; 1544485; 8356032; 8605632; 9485412; 10423234 [H]