| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pabB [H]
Identifier: 103485667
GI number: 103485667
Start: 174007
End: 175845
Strand: Direct
Name: pabB [H]
Synonym: Sala_0171
Alternate gene names: 103485667
Gene position: 174007-175845 (Clockwise)
Preceding gene: 103485666
Following gene: 103485668
Centisome position: 5.2
GC content: 68.62
Gene sequence:
>1839_bases ATGGCGGACAGGATTCCCGTTCGGGGGCCGAATAGCCCCCCCTTCGTGCTGCTCGACGATGCGCGCACCGACGGGGCGGC TTGGGCGCGGCTCTTCGTCGATCCGATCGAGGTACTGACCGCTGCATCGGCCGCCGACGTGCCCGAGCTGCTCGCGGAGC TGGAGGCCGCTGTGGCGCGTGGCCTCCATGTCGCGGGCTTCCTTGCCTATGAAGCCGGGAAGGGACTCGGAACGGCGTGG CGCGGTGCCGTCGATGGCGTGGTCGGCGCGATGCCGCTCGGCTGGTTCGGCCTGTTCACCGGGGTGCAGCGCATCGACTC CGATCATGTCGCAGATCTGCTGTCCGATCCGGCGTCGGCATGGATAGGCTGCGTGACGCCACGGATCGACCGCGCCGACT ATGTCGCCGCGGTCGAGGCGGTGCTTGCCTATATCCGCGCAGGTGACATTTATCAGGCCAACCTCACCTTCCGCGCCGAT GTGCCCGTCGCGGGGGATCCGCTCGCCGTTTACGCGCGGCTCCGGCAAACGGCGCGGGCGGGATATGGCGGCTTCATCTG GACGGGCGAGCAGGCGATCGCATCGCTGTCCCCCGAACTTTTCTTTGCGCTGCGCGGGCGCGAGGTCATCGCGCGGCCGA TGAAGGGTACCGCGACCCGGCTCGCAGATGGCGCCGCCGACGCGGCATTGGCGCGCGCGCTGGCCAAAGACCCCAAGCAG CGCGCGGAAAATCTGATGATCGTCGACCTGATCCGCAACGATCTGTCGCGCGTTGCGGCGCCGGGCTCGGTCGCGGTGCC CGACCTGTTTCGCGTCGAAAGCTTCCCGACGGTCCACCAGCTTGTGTCCGATGTCAGCGCCCGGCTGCCCGAGGGCGTCG GCGCCGTCGACGTGCTCCGCGCGGCCTTTCCCTGCGGGTCGATCACCGGGGCGCCCAAGGTGCGCGCGATGGAAATCATC GAGGCGCTGGAGAGCGAACCGCGCGGCCTTTATACGGGCTCGATCGGCTTTATCGAGCCGGGCGGCGATGCCGCATTCAA CGTCGCGATCCGCACGCTCGTCTTTCCCCGCATTGCCACGCAAGGCGGGTTGCAGGACGCACCGTCATGCGCCACGCTGG GTCTGGGGTCGGGAATCGTCGCCGACAGCGTGCCGGACGAAGAATGGCGCGAATGTCTGGCCAAGGGGGAATTTGTGGGC GCAGCGGGTGAGAGCTTCGACCTGATTGAAACCATGTTTTTCGATCCCGTGGAGGGGATTCAGCGCCTCGATGGGCATCT CGCGCGGATGAAGGCGAGCGCGGCGACGCTGGGCTTCGCCTTCGATCGCCACGGCGCGCGCAACAGCCTGCAATCTGCGA CCTTCCGCCTGCGCAATGCGGCGCGCGTGCGAATGCGGCTCGCACCTTCGGGGGCGCTTGCGGTTGAGGTGTCGCCGCTT CCCCGGCTCGCCGAACTGCCGGTACCCGTCGCGGTGCGTCCCGCGCCGATGGGGCCGGGCGATTTTCGCGTGGCGCACAA GACGAGCCTGCGCGCCCCTTATGATATGGCGCGGCACGACAGCGGCGCCGCCGAAGTCGTGTTCGTCGACGAGCCGGGCT TCGTTACCGAAGGAAGCTGGAGCAATATCTTCGTCGAGCGCGACGGGGTGCTGTTGACCCCGCCGCTGGCGCTCGGACTG CTTCCCGGCGTGCTGCGCGGCGAACTCATCGACAAGGGGCGCGCCGTCGAATCGTACCTGCGCCTTGCCGACCTGTCCGC CGGCTTCTTCCTCGGTAACAGCCTGCGCGGCCTGGTGCCGGCGCGGCTCGCCGAGCCTGCCGACGACGCGACAGGCTGA
Upstream 100 bases:
>100_bases CATGGGCAGCTATTTTGCGACGATCGACGGCGGGCGCACGATCCGCATGAAGCGCGACCGCTGATTGCAGCCGGAAGGGG CACGATGCACGCAGGACGGC
Downstream 100 bases:
>100_bases ATCGCGCATCGCATAGGAAATTATCGCGCCGCCGCCTTGCGATTTGCGGGCGGAGGCTTTAGGCGCGGCCGCGCGCAATT TCCTGTCAGTCCGCTCGCGA
Product: para-aminobenzoate synthase, component I
Products: NA
Alternate protein names: ADC synthase; Para-aminobenzoate synthase component I [H]
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MADRIPVRGPNSPPFVLLDDARTDGAAWARLFVDPIEVLTAASAADVPELLAELEAAVARGLHVAGFLAYEAGKGLGTAW RGAVDGVVGAMPLGWFGLFTGVQRIDSDHVADLLSDPASAWIGCVTPRIDRADYVAAVEAVLAYIRAGDIYQANLTFRAD VPVAGDPLAVYARLRQTARAGYGGFIWTGEQAIASLSPELFFALRGREVIARPMKGTATRLADGAADAALARALAKDPKQ RAENLMIVDLIRNDLSRVAAPGSVAVPDLFRVESFPTVHQLVSDVSARLPEGVGAVDVLRAAFPCGSITGAPKVRAMEII EALESEPRGLYTGSIGFIEPGGDAAFNVAIRTLVFPRIATQGGLQDAPSCATLGLGSGIVADSVPDEEWRECLAKGEFVG AAGESFDLIETMFFDPVEGIQRLDGHLARMKASAATLGFAFDRHGARNSLQSATFRLRNAARVRMRLAPSGALAVEVSPL PRLAELPVPVAVRPAPMGPGDFRVAHKTSLRAPYDMARHDSGAAEVVFVDEPGFVTEGSWSNIFVERDGVLLTPPLALGL LPGVLRGELIDKGRAVESYLRLADLSAGFFLGNSLRGLVPARLAEPADDATG
Sequences:
>Translated_612_residues MADRIPVRGPNSPPFVLLDDARTDGAAWARLFVDPIEVLTAASAADVPELLAELEAAVARGLHVAGFLAYEAGKGLGTAW RGAVDGVVGAMPLGWFGLFTGVQRIDSDHVADLLSDPASAWIGCVTPRIDRADYVAAVEAVLAYIRAGDIYQANLTFRAD VPVAGDPLAVYARLRQTARAGYGGFIWTGEQAIASLSPELFFALRGREVIARPMKGTATRLADGAADAALARALAKDPKQ RAENLMIVDLIRNDLSRVAAPGSVAVPDLFRVESFPTVHQLVSDVSARLPEGVGAVDVLRAAFPCGSITGAPKVRAMEII EALESEPRGLYTGSIGFIEPGGDAAFNVAIRTLVFPRIATQGGLQDAPSCATLGLGSGIVADSVPDEEWRECLAKGEFVG AAGESFDLIETMFFDPVEGIQRLDGHLARMKASAATLGFAFDRHGARNSLQSATFRLRNAARVRMRLAPSGALAVEVSPL PRLAELPVPVAVRPAPMGPGDFRVAHKTSLRAPYDMARHDSGAAEVVFVDEPGFVTEGSWSNIFVERDGVLLTPPLALGL LPGVLRGELIDKGRAVESYLRLADLSAGFFLGNSLRGLVPARLAEPADDATG >Mature_611_residues ADRIPVRGPNSPPFVLLDDARTDGAAWARLFVDPIEVLTAASAADVPELLAELEAAVARGLHVAGFLAYEAGKGLGTAWR GAVDGVVGAMPLGWFGLFTGVQRIDSDHVADLLSDPASAWIGCVTPRIDRADYVAAVEAVLAYIRAGDIYQANLTFRADV PVAGDPLAVYARLRQTARAGYGGFIWTGEQAIASLSPELFFALRGREVIARPMKGTATRLADGAADAALARALAKDPKQR AENLMIVDLIRNDLSRVAAPGSVAVPDLFRVESFPTVHQLVSDVSARLPEGVGAVDVLRAAFPCGSITGAPKVRAMEIIE ALESEPRGLYTGSIGFIEPGGDAAFNVAIRTLVFPRIATQGGLQDAPSCATLGLGSGIVADSVPDEEWRECLAKGEFVGA AGESFDLIETMFFDPVEGIQRLDGHLARMKASAATLGFAFDRHGARNSLQSATFRLRNAARVRMRLAPSGALAVEVSPLP RLAELPVPVAVRPAPMGPGDFRVAHKTSLRAPYDMARHDSGAAEVVFVDEPGFVTEGSWSNIFVERDGVLLTPPLALGLL PGVLRGELIDKGRAVESYLRLADLSAGFFLGNSLRGLVPARLAEPADDATG
Specific function: Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine [H]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate synthase component I family [H]
Homologues:
Organism=Escherichia coli, GI1788114, Length=278, Percent_Identity=45.6834532374101, Blast_Score=218, Evalue=7e-58, Organism=Escherichia coli, GI1787518, Length=263, Percent_Identity=34.6007604562738, Blast_Score=130, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6320935, Length=264, Percent_Identity=36.3636363636364, Blast_Score=145, Evalue=2e-35, Organism=Saccharomyces cerevisiae, GI6324361, Length=296, Percent_Identity=29.7297297297297, Blast_Score=102, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR019999 - InterPro: IPR006805 - InterPro: IPR015890 - InterPro: IPR005802 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind [H]
EC number: =2.6.1.85 [H]
Molecular weight: Translated: 64595; Mature: 64464
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00036 BZIP_BASIC ; PS00770 AA_TRANSFER_CLASS_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRIPVRGPNSPPFVLLDDARTDGAAWARLFVDPIEVLTAASAADVPELLAELEAAVAR CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC GLHVAGFLAYEAGKGLGTAWRGAVDGVVGAMPLGWFGLFTGVQRIDSDHVADLLSDPASA CCHHHHEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHH WIGCVTPRIDRADYVAAVEAVLAYIRAGDIYQANLTFRADVPVAGDPLAVYARLRQTARA HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCCCCCHHHHHHHHHHHHHC GYGGFIWTGEQAIASLSPELFFALRGREVIARPMKGTATRLADGAADAALARALAKDPKQ CCCCEEEECHHHHHHCCHHHEEEECCCHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCHHH RAENLMIVDLIRNDLSRVAAPGSVAVPDLFRVESFPTVHQLVSDVSARLPEGVGAVDVLR HHCCEEEHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH AAFPCGSITGAPKVRAMEIIEALESEPRGLYTGSIGFIEPGGDAAFNVAIRTLVFPRIAT HHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEECCCCCHHHHHHHHHHHHHHHHC QGGLQDAPSCATLGLGSGIVADSVPDEEWRECLAKGEFVGAAGESFDLIETMFFDPVEGI CCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHCCHHHHH QRLDGHLARMKASAATLGFAFDRHGARNSLQSATFRLRNAARVRMRLAPSGALAVEVSPL HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCC PRLAELPVPVAVRPAPMGPGDFRVAHKTSLRAPYDMARHDSGAAEVVFVDEPGFVTEGSW CCHHHCCCCEEEECCCCCCCCEEEEHHCCCCCCHHHHHCCCCCEEEEEECCCCCEECCCC SNIFVERDGVLLTPPLALGLLPGVLRGELIDKGRAVESYLRLADLSAGFFLGNSLRGLVP CEEEEECCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCCCH ARLAEPADDATG HHHCCCCCCCCC >Mature Secondary Structure ADRIPVRGPNSPPFVLLDDARTDGAAWARLFVDPIEVLTAASAADVPELLAELEAAVAR CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC GLHVAGFLAYEAGKGLGTAWRGAVDGVVGAMPLGWFGLFTGVQRIDSDHVADLLSDPASA CCHHHHEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHH WIGCVTPRIDRADYVAAVEAVLAYIRAGDIYQANLTFRADVPVAGDPLAVYARLRQTARA HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCCCCCHHHHHHHHHHHHHC GYGGFIWTGEQAIASLSPELFFALRGREVIARPMKGTATRLADGAADAALARALAKDPKQ CCCCEEEECHHHHHHCCHHHEEEECCCHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCHHH RAENLMIVDLIRNDLSRVAAPGSVAVPDLFRVESFPTVHQLVSDVSARLPEGVGAVDVLR HHCCEEEHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH AAFPCGSITGAPKVRAMEIIEALESEPRGLYTGSIGFIEPGGDAAFNVAIRTLVFPRIAT HHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEECCCCCHHHHHHHHHHHHHHHHC QGGLQDAPSCATLGLGSGIVADSVPDEEWRECLAKGEFVGAAGESFDLIETMFFDPVEGI CCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHCCHHHHH QRLDGHLARMKASAATLGFAFDRHGARNSLQSATFRLRNAARVRMRLAPSGALAVEVSPL HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCC PRLAELPVPVAVRPAPMGPGDFRVAHKTSLRAPYDMARHDSGAAEVVFVDEPGFVTEGSW CCHHHCCCCEEEECCCCCCCCEEEEHHCCCCCCHHHHHCCCCCEEEEEECCCCCEECCCC SNIFVERDGVLLTPPLALGLLPGVLRGELIDKGRAVESYLRLADLSAGFFLGNSLRGLVP CEEEEECCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCCCH ARLAEPADDATG HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3057324; 11677609; 2251281 [H]