| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is amn [H]
Identifier: 103485663
GI number: 103485663
Start: 167576
End: 169057
Strand: Direct
Name: amn [H]
Synonym: Sala_0167
Alternate gene names: 103485663
Gene position: 167576-169057 (Clockwise)
Preceding gene: 103485662
Following gene: 103485664
Centisome position: 5.01
GC content: 66.26
Gene sequence:
>1482_bases ATGACATCCAGATCATCGCAAGAATCCACCGATCCCGCAGCGCGCATCGACGCCATCATCGCCGAGCTTCAGGACAAGTT CCGCGCGTCGGTTTCCAACCTCAAATCCGCCATCGCCGCCTATGTGCGCGACCGCCGCCTGCCGCCCGCCGATGCCGCGG CGACCGGCCTTTTCGACTATCCGGCGATCCGCCTGACGACGACGGGCGAACAGCGCGAAGGGCAGGCGGGGCACAATCTG TCATTTGGCCGTTTCGAGCGCGCGGGCACGTTTGAAACCACGGTGACGCGCCCCGACCTGTTCGCCGACTATCTGCGCGA ACAATTGCTCCTGCTCGCGCGCCATTACGACGTCGAGATCGAAGTGACCCGCACGGGGCAGCAGATTCCCTTCCCCTATG TGCTCGACGCCAGCGACGGGTCGGACATGGGCGGGGTCACCCCGCTCGAACTCGCGCGCCATTTCCCGACCACCGAACTT GCGGACATCGGCGACGAGCTGGCCGACGGGCTGTTCGGGCTTGATCCCACCGAGCCGCAGCCGCTCGCGTTGTTCGACGC CCTTCGCACCGATTTCAGCCTCGCGCGCCTCCGTCACTACACCGGTACCGCGCCCGAGCATTTCCAGCGCTATATCCTGT TCACCAACTATCACCGCTATGTCGACGAATTCGTCGCCTGGGCGGGGGCGCAGGTGGGGCGGGGGCGCTACACCGCGCTC GCGGGCGCGGCAGGCCTCTATGTCGACCAGCCGGGCGTCAACGCCAGCGCGCTCGTCGCCGACAGCGCCTGGCGGCGGCA CCAGATGCCCGCCTATCACCTCATCGCTCCCGATGGCGGCGGCATCACCCTCGTCAACATCGGCGTCGGCCCGTCGAACG CCAAGACGATCTGCGACCATCTCGCGGTGCTGCGTCCCGAGGCGTGGCTGATGATCGGGCATTGCGGCGGGCTCCGCCCC AGCCAGCGTATCGGCGACTATGTGCTCGCGCACGCATATCTCCGCGACGACCACATCCTCGACGGCGTGCTGCCGCCCGA AATCCCCATTCCGCCGATCGCCGAAGTGCAACAGGCATTGGCAAGCGCCGCCGAAAGCGTGTCGGGGACCAGCGGCGCCG ACCTCAAGAAGCGGATGCGCACCGGCACGGTCGTCACCACCGATGATCGCAACTGGGAGCTGCGTTACACCGACTCGGCG CTGCGTTTTTCGCAATCGCGCGCGATCGGCATCGACATGGAATCGGCAACGATCGCCGCGCAAGGCTATCGTTTCCGCGT GCCGTACGGTACGCTGCTTTGCGTGAGTGACAAGCCGCTTCACGGCGAACTCAAGCTGCCCGGACAGGCGAACCGCTTTT ACGAAGAGGCAATCGCCGCGCACCTCCAGATCGGCATCCGCGCGTGCGAGACGATGCGCGACGAGGGCGCCAAGCTGCAC AGCCGCAAATTGCGCGCGTTCAACGAGCCGCCGTTCCGTTGA
Upstream 100 bases:
>100_bases CGCAAGGGGAGGGGCCGCGTCTCGCCGCCCTTCCCTGAAGGCGAGGGCGGCGACGATCGCCCCCTTTCCTTTTGTCACAA TTTCGTGCAACAGCGTCGCG
Downstream 100 bases:
>100_bases GGTCAACCTCGCGTTAACCATAAAGCAAGGCCGGTATCGTAATTTCACATGCGCTGCCGCTTTTCCCTTGCGGTGCGGCG ACGGCATCGCCACGTTGCAT
Product: AMP nucleosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MTSRSSQESTDPAARIDAIIAELQDKFRASVSNLKSAIAAYVRDRRLPPADAAATGLFDYPAIRLTTTGEQREGQAGHNL SFGRFERAGTFETTVTRPDLFADYLREQLLLLARHYDVEIEVTRTGQQIPFPYVLDASDGSDMGGVTPLELARHFPTTEL ADIGDELADGLFGLDPTEPQPLALFDALRTDFSLARLRHYTGTAPEHFQRYILFTNYHRYVDEFVAWAGAQVGRGRYTAL AGAAGLYVDQPGVNASALVADSAWRRHQMPAYHLIAPDGGGITLVNIGVGPSNAKTICDHLAVLRPEAWLMIGHCGGLRP SQRIGDYVLAHAYLRDDHILDGVLPPEIPIPPIAEVQQALASAAESVSGTSGADLKKRMRTGTVVTTDDRNWELRYTDSA LRFSQSRAIGIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGELKLPGQANRFYEEAIAAHLQIGIRACETMRDEGAKLH SRKLRAFNEPPFR
Sequences:
>Translated_493_residues MTSRSSQESTDPAARIDAIIAELQDKFRASVSNLKSAIAAYVRDRRLPPADAAATGLFDYPAIRLTTTGEQREGQAGHNL SFGRFERAGTFETTVTRPDLFADYLREQLLLLARHYDVEIEVTRTGQQIPFPYVLDASDGSDMGGVTPLELARHFPTTEL ADIGDELADGLFGLDPTEPQPLALFDALRTDFSLARLRHYTGTAPEHFQRYILFTNYHRYVDEFVAWAGAQVGRGRYTAL AGAAGLYVDQPGVNASALVADSAWRRHQMPAYHLIAPDGGGITLVNIGVGPSNAKTICDHLAVLRPEAWLMIGHCGGLRP SQRIGDYVLAHAYLRDDHILDGVLPPEIPIPPIAEVQQALASAAESVSGTSGADLKKRMRTGTVVTTDDRNWELRYTDSA LRFSQSRAIGIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGELKLPGQANRFYEEAIAAHLQIGIRACETMRDEGAKLH SRKLRAFNEPPFR >Mature_492_residues TSRSSQESTDPAARIDAIIAELQDKFRASVSNLKSAIAAYVRDRRLPPADAAATGLFDYPAIRLTTTGEQREGQAGHNLS FGRFERAGTFETTVTRPDLFADYLREQLLLLARHYDVEIEVTRTGQQIPFPYVLDASDGSDMGGVTPLELARHFPTTELA DIGDELADGLFGLDPTEPQPLALFDALRTDFSLARLRHYTGTAPEHFQRYILFTNYHRYVDEFVAWAGAQVGRGRYTALA GAAGLYVDQPGVNASALVADSAWRRHQMPAYHLIAPDGGGITLVNIGVGPSNAKTICDHLAVLRPEAWLMIGHCGGLRPS QRIGDYVLAHAYLRDDHILDGVLPPEIPIPPIAEVQQALASAAESVSGTSGADLKKRMRTGTVVTTDDRNWELRYTDSAL RFSQSRAIGIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGELKLPGQANRFYEEAIAAHLQIGIRACETMRDEGAKLHS RKLRAFNEPPFR
Specific function: Involved in regulation of AMP concentrations [H]
COG id: COG0775
COG function: function code F; Nucleoside phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788293, Length=488, Percent_Identity=61.8852459016393, Blast_Score=586, Evalue=1e-168,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011271 - InterPro: IPR018953 - InterPro: IPR018017 - InterPro: IPR000845 [H]
Pfam domain/function: PF10423 AMNp_N; PF01048 PNP_UDP_1 [H]
EC number: =3.2.2.4 [H]
Molecular weight: Translated: 54172; Mature: 54040
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRSSQESTDPAARIDAIIAELQDKFRASVSNLKSAIAAYVRDRRLPPADAAATGLFDY CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCC PAIRLTTTGEQREGQAGHNLSFGRFERAGTFETTVTRPDLFADYLREQLLLLARHYDVEI CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEE EVTRTGQQIPFPYVLDASDGSDMGGVTPLELARHFPTTELADIGDELADGLFGLDPTEPQ EEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC PLALFDALRTDFSLARLRHYTGTAPEHFQRYILFTNYHRYVDEFVAWAGAQVGRGRYTAL CHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEHEEHHHHHHHHHHHHHHCCCCCCCCEEEH AGAAGLYVDQPGVNASALVADSAWRRHQMPAYHLIAPDGGGITLVNIGVGPSNAKTICDH HCCCCEEEECCCCCHHHEEHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHH LAVLRPEAWLMIGHCGGLRPSQRIGDYVLAHAYLRDDHILDGVLPPEIPIPPIAEVQQAL HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH ASAAESVSGTSGADLKKRMRTGTVVTTDDRNWELRYTDSALRFSQSRAIGIDMESATIAA HHHHHHCCCCCCHHHHHHHHCCCEEEECCCCEEEEECCHHHHHCCCCEEEEECCCCEEEE QGYRFRVPYGTLLCVSDKPLHGELKLPGQANRFYEEAIAAHLQIGIRACETMRDEGAKLH CCEEEECCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH SRKLRAFNEPPFR HHHHHHCCCCCCC >Mature Secondary Structure TSRSSQESTDPAARIDAIIAELQDKFRASVSNLKSAIAAYVRDRRLPPADAAATGLFDY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCC PAIRLTTTGEQREGQAGHNLSFGRFERAGTFETTVTRPDLFADYLREQLLLLARHYDVEI CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEE EVTRTGQQIPFPYVLDASDGSDMGGVTPLELARHFPTTELADIGDELADGLFGLDPTEPQ EEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC PLALFDALRTDFSLARLRHYTGTAPEHFQRYILFTNYHRYVDEFVAWAGAQVGRGRYTAL CHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEHEEHHHHHHHHHHHHHHCCCCCCCCEEEH AGAAGLYVDQPGVNASALVADSAWRRHQMPAYHLIAPDGGGITLVNIGVGPSNAKTICDH HCCCCEEEECCCCCHHHEEHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHH LAVLRPEAWLMIGHCGGLRPSQRIGDYVLAHAYLRDDHILDGVLPPEIPIPPIAEVQQAL HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH ASAAESVSGTSGADLKKRMRTGTVVTTDDRNWELRYTDSALRFSQSRAIGIDMESATIAA HHHHHHCCCCCCHHHHHHHHCCCEEEECCCCEEEEECCHHHHHCCCCEEEEECCCCEEEE QGYRFRVPYGTLLCVSDKPLHGELKLPGQANRFYEEAIAAHLQIGIRACETMRDEGAKLH CCEEEECCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH SRKLRAFNEPPFR HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]