| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485662
Identifier: 103485662
GI number: 103485662
Start: 166953
End: 167456
Strand: Direct
Name: 103485662
Synonym: Sala_0166
Alternate gene names: NA
Gene position: 166953-167456 (Clockwise)
Preceding gene: 103485660
Following gene: 103485663
Centisome position: 4.99
GC content: 61.11
Gene sequence:
>504_bases TTGAGCGAAAAGGATGCCAAGATGACGATCCAACCCGGCGACAAGCTGCCCGACGCGACCTTCGTAAAGGTGACCGAAAA TGGTCCCGAACAGGTCAGCGCCGCCGATTATTTCAAGGGCCGCAGGGTCGCGCTCTTTTCGGTTCCCGGCGCTTTCACGC CGACCTGCTCGGCCAAGCATCTGCCCGGCTTTGTCGAAAAAGCCGACGCCTTGAAGGCCAAGGGTGTCGATGAAATCGCC TGCACCGCGGTCAACGACGCCTTTGTCATGGGCGCATGGAGCAAGAGCGCCAACGCCGGCGATGCGGTCACGATGCTCGC CGACGGCAATGGCGCCTTTGCCGAAGCGGTGGGCCTCACCATGGACGGCACTGCTTTCGGCATGGGCAAGCGCGGCCAGC GTTTCTCGATGATCATCAACGACGGCGTCGTCGAACAGCTGAATGTCGAAGCGCCGGGCGAGTTCAAGGTGTCGAGCGCC GATCATATGCTGGAACAGCTGTAA
Upstream 100 bases:
>100_bases CCGGTCGCAAGCGGTCAATTCGTCCAAACTCCCACCCTCCCTCTTCGCCATCCTTGACTCGCGTCCCCGGCGCCCCAATG TCTCGCCGACCCGAATCCCC
Downstream 100 bases:
>100_bases GCAAAGCTCCGCCCCTTCCCGCAAGGGGAGGGGCCGCGTCTCGCCGCCCTTCCCTGAAGGCGAGGGCGGCGACGATCGCC CCCTTTCCTTTTGTCACAAT
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Thioredoxin reductase [H]
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSEKDAKMTIQPGDKLPDATFVKVTENGPEQVSAADYFKGRRVALFSVPGAFTPTCSAKHLPGFVEKADALKAKGVDEIA CTAVNDAFVMGAWSKSANAGDAVTMLADGNGAFAEAVGLTMDGTAFGMGKRGQRFSMIINDGVVEQLNVEAPGEFKVSSA DHMLEQL
Sequences:
>Translated_167_residues MSEKDAKMTIQPGDKLPDATFVKVTENGPEQVSAADYFKGRRVALFSVPGAFTPTCSAKHLPGFVEKADALKAKGVDEIA CTAVNDAFVMGAWSKSANAGDAVTMLADGNGAFAEAVGLTMDGTAFGMGKRGQRFSMIINDGVVEQLNVEAPGEFKVSSA DHMLEQL >Mature_166_residues SEKDAKMTIQPGDKLPDATFVKVTENGPEQVSAADYFKGRRVALFSVPGAFTPTCSAKHLPGFVEKADALKAKGVDEIAC TAVNDAFVMGAWSKSANAGDAVTMLADGNGAFAEAVGLTMDGTAFGMGKRGQRFSMIINDGVVEQLNVEAPGEFKVSSAD HMLEQL
Specific function: Unknown
COG id: COG0678
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutaredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI6912238, Length=162, Percent_Identity=46.9135802469136, Blast_Score=137, Evalue=4e-33, Organism=Saccharomyces cerevisiae, GI6323138, Length=135, Percent_Identity=31.1111111111111, Blast_Score=68, Evalue=7e-13, Organism=Drosophila melanogaster, GI78706776, Length=155, Percent_Identity=45.1612903225806, Blast_Score=129, Evalue=7e-31, Organism=Drosophila melanogaster, GI78709078, Length=155, Percent_Identity=45.1612903225806, Blast_Score=129, Evalue=7e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011767 - InterPro: IPR002109 - InterPro: IPR011906 - InterPro: IPR014025 - InterPro: IPR013740 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00462 Glutaredoxin; PF08534 Redoxin [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 17537; Mature: 17406
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKDAKMTIQPGDKLPDATFVKVTENGPEQVSAADYFKGRRVALFSVPGAFTPTCSAKH CCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCC LPGFVEKADALKAKGVDEIACTAVNDAFVMGAWSKSANAGDAVTMLADGNGAFAEAVGLT CCCHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCCEEHEECEE MDGTAFGMGKRGQRFSMIINDGVVEQLNVEAPGEFKVSSADHMLEQL ECCCEECCCCCCCEEEEEECCCCEEEECCCCCCCEEECCHHHHHHHC >Mature Secondary Structure SEKDAKMTIQPGDKLPDATFVKVTENGPEQVSAADYFKGRRVALFSVPGAFTPTCSAKH CCCCCEEEECCCCCCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCC LPGFVEKADALKAKGVDEIACTAVNDAFVMGAWSKSANAGDAVTMLADGNGAFAEAVGLT CCCHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCCEEHEECEE MDGTAFGMGKRGQRFSMIINDGVVEQLNVEAPGEFKVSSADHMLEQL ECCCEECCCCCCCEEEEEECCCCEEEECCCCCCCEEECCHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]