| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is msrA [H]
Identifier: 103485613
GI number: 103485613
Start: 114425
End: 115027
Strand: Direct
Name: msrA [H]
Synonym: Sala_0117
Alternate gene names: 103485613
Gene position: 114425-115027 (Clockwise)
Preceding gene: 103485612
Following gene: 103485614
Centisome position: 3.42
GC content: 57.88
Gene sequence:
>603_bases ATGGCGAAGATCGGCTTTGGAGGGGGGTGCCATTGGTGCACCGAAGGGGTGTTCCAGGCGCTGCGCGGCGTTGCGCAGGT CGACCAGGGCTTTGTCCAATCGGACGCTCCGGCAGATAGCTGGTCAGAAGGGGTGATCGTCACCTTCGATCCTTCAATCA TTCCGTTGGCAACGCTGTGCGAGGTGCATCTGAGAACGCATTCAGCCACCCGGGCCCGCTCTCCTAGCGACAAGTACCGC AGCGCGATCTATATTTTCGATGACAACCAGCGGCATGAGGCCGAACTGGCGATCGTCCGATTTGCCGAGGAATTCGGCAA TACGGCGCATACCCTGGTTCTGCCGTTCAGAAGCTTCAAGGCTTCGGACGAGCGTTACCAGAACTATTATCGAACCGATC CGAGCCGACCCTTCTGCCGCCGCTTCATCGATCCCAAGCTGGACTATATTCGGCAGCATTTTTCGGAAGTGGCCCTGCCT GAACCGAACTCTGTCGCCGAGCACGCTGTCGATCGCGACAATGTCTCGCAAGACCCCGCCAGCGCTGGGATAATGACTGA CAGTTCTTCATCCATCGCAACTCAATCAAGGACGTCGCCATGA
Upstream 100 bases:
>100_bases CGCTGATGCTTACATTGATTGCGTCCGCAGCCAGAAGGCTCAGGCGCGCGAGACGGCGCTGATCCGCGGAAAGAAATACG TCTAGGCGCGAGAGGTGAAG
Downstream 100 bases:
>100_bases TGATCAAAAAGCCATTCACTATTCTCCCTCTCGCCCTGGCGCTGCTTGGCCCGATATCCTCTTCTCCCGGTTTAGCGGCT CCGACGCCCGCCGCGGTGCC
Product: methionine sulfoxide reductase A
Products: NA
Alternate protein names: Protein-methionine-S-oxide reductase; Peptide-methionine (S)-S-oxide reductase; Peptide Met(O) reductase [H]
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MAKIGFGGGCHWCTEGVFQALRGVAQVDQGFVQSDAPADSWSEGVIVTFDPSIIPLATLCEVHLRTHSATRARSPSDKYR SAIYIFDDNQRHEAELAIVRFAEEFGNTAHTLVLPFRSFKASDERYQNYYRTDPSRPFCRRFIDPKLDYIRQHFSEVALP EPNSVAEHAVDRDNVSQDPASAGIMTDSSSSIATQSRTSP
Sequences:
>Translated_200_residues MAKIGFGGGCHWCTEGVFQALRGVAQVDQGFVQSDAPADSWSEGVIVTFDPSIIPLATLCEVHLRTHSATRARSPSDKYR SAIYIFDDNQRHEAELAIVRFAEEFGNTAHTLVLPFRSFKASDERYQNYYRTDPSRPFCRRFIDPKLDYIRQHFSEVALP EPNSVAEHAVDRDNVSQDPASAGIMTDSSSSIATQSRTSP >Mature_199_residues AKIGFGGGCHWCTEGVFQALRGVAQVDQGFVQSDAPADSWSEGVIVTFDPSIIPLATLCEVHLRTHSATRARSPSDKYRS AIYIFDDNQRHEAELAIVRFAEEFGNTAHTLVLPFRSFKASDERYQNYYRTDPSRPFCRRFIDPKLDYIRQHFSEVALPE PNSVAEHAVDRDNVSQDPASAGIMTDSSSSIATQSRTSP
Specific function: Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine [H]
COG id: COG0225
COG function: function code O; Peptide methionine sulfoxide reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the msrA Met sulfoxide reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002569 [H]
Pfam domain/function: PF01625 PMSR [H]
EC number: =1.8.4.11 [H]
Molecular weight: Translated: 22303; Mature: 22172
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIGFGGGCHWCTEGVFQALRGVAQVDQGFVQSDAPADSWSEGVIVTFDPSIIPLATLC CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH EVHLRTHSATRARSPSDKYRSAIYIFDDNQRHEAELAIVRFAEEFGNTAHTLVLPFRSFK HHHHHHCCHHHCCCCCHHHCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHC ASDERYQNYYRTDPSRPFCRRFIDPKLDYIRQHFSEVALPEPNSVAEHAVDRDNVSQDPA CCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCC SAGIMTDSSSSIATQSRTSP CCCEEECCCCCHHCCCCCCC >Mature Secondary Structure AKIGFGGGCHWCTEGVFQALRGVAQVDQGFVQSDAPADSWSEGVIVTFDPSIIPLATLC CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH EVHLRTHSATRARSPSDKYRSAIYIFDDNQRHEAELAIVRFAEEFGNTAHTLVLPFRSFK HHHHHHCCHHHCCCCCHHHCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHC ASDERYQNYYRTDPSRPFCRRFIDPKLDYIRQHFSEVALPEPNSVAEHAVDRDNVSQDPA CCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCC SAGIMTDSSSSIATQSRTSP CCCEEECCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10567266 [H]