Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is glcG [C]

Identifier: 103485603

GI number: 103485603

Start: 105166

End: 105597

Strand: Reverse

Name: glcG [C]

Synonym: Sala_0106

Alternate gene names: 103485603

Gene position: 105597-105166 (Counterclockwise)

Preceding gene: 103485604

Following gene: 103485602

Centisome position: 3.16

GC content: 61.81

Gene sequence:

>432_bases
ATGACCAAGTCCATTGCCACTGCCTCGATCAACCGTGAAACCGCAGTCGCCCTCATCGACGCAGCGATAACCGCCGCCCG
TGCAATCGGCATCCCGGCTGCCGTCGCCGTCGTCGACGCAACCGGGTATCTGCGGGCGTTCGAGCGCACCGACGACGCGC
CGTTTCTCACCGTCGATGTTGCCATCGACAAAGCGTGGAGTTCCGCCTCCTTTGGATATCCGACCCATGTCTGGAACGAC
TATGTGAGCAACGATCCCAAAGTGGCGCCGCTGGCCTATCGCCCCCGGATGGTCGCCGTCGGTGGCGGCTATCCGATCCT
TGAGGACGGAAAGCTGATCGGCGGAATCGGCATCTCCGGAGGCACTTATCAGCAGGACCAGGATGCCTGCGTTGAGGCAC
TCCAGAAAATCGGGTTCGAACTGCCAGCCTGA

Upstream 100 bases:

>100_bases
TCGAAAGTGGCGCGGCGAAAGGCAAGACCGTCCTCGAAGGATTCTGATCTTTTCCAGTCCAAGTAACGCCGGACGATAAC
GCCGCGGCGAAGGAAATCCC

Downstream 100 bases:

>100_bases
CGACTGTCAGGCCATCGTCGGTGGCGATGGCCGGCAGATCTCACCTTGCGAAGGATCTTATGATGGAAGCGTTTGTCGTA
TTCACGCGGGAAGACACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: ORFY [H]

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTKSIATASINRETAVALIDAAITAARAIGIPAAVAVVDATGYLRAFERTDDAPFLTVDVAIDKAWSSASFGYPTHVWND
YVSNDPKVAPLAYRPRMVAVGGGYPILEDGKLIGGIGISGGTYQQDQDACVEALQKIGFELPA

Sequences:

>Translated_143_residues
MTKSIATASINRETAVALIDAAITAARAIGIPAAVAVVDATGYLRAFERTDDAPFLTVDVAIDKAWSSASFGYPTHVWND
YVSNDPKVAPLAYRPRMVAVGGGYPILEDGKLIGGIGISGGTYQQDQDACVEALQKIGFELPA
>Mature_142_residues
TKSIATASINRETAVALIDAAITAARAIGIPAAVAVVDATGYLRAFERTDDAPFLTVDVAIDKAWSSASFGYPTHVWNDY
VSNDPKVAPLAYRPRMVAVGGGYPILEDGKLIGGIGISGGTYQQDQDACVEALQKIGFELPA

Specific function: Unknown

COG id: COG3193

COG function: function code R; Uncharacterized protein, possibly involved in utilization of glycolate and propanediol

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glcG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005624 [H]

Pfam domain/function: PF03928 DUF336 [H]

EC number: NA

Molecular weight: Translated: 15002; Mature: 14871

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSIATASINRETAVALIDAAITAARAIGIPAAVAVVDATGYLRAFERTDDAPFLTVDV
CCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEE
AIDKAWSSASFGYPTHVWNDYVSNDPKVAPLAYRPRMVAVGGGYPILEDGKLIGGIGISG
EEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCEEEEECCCCCEEECCEEEEEEECCC
GTYQQDQDACVEALQKIGFELPA
CCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TKSIATASINRETAVALIDAAITAARAIGIPAAVAVVDATGYLRAFERTDDAPFLTVDV
CCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEE
AIDKAWSSASFGYPTHVWNDYVSNDPKVAPLAYRPRMVAVGGGYPILEDGKLIGGIGISG
EEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCEEEEECCCCCEEECCEEEEEEECCC
GTYQQDQDACVEALQKIGFELPA
CCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA