| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485602
Identifier: 103485602
GI number: 103485602
Start: 104813
End: 105145
Strand: Reverse
Name: 103485602
Synonym: Sala_0105
Alternate gene names: NA
Gene position: 105145-104813 (Counterclockwise)
Preceding gene: 103485603
Following gene: 103485601
Centisome position: 3.14
GC content: 60.36
Gene sequence:
>333_bases GTGGCGATGGCCGGCAGATCTCACCTTGCGAAGGATCTTATGATGGAAGCGTTTGTCGTATTCACGCGGGAAGACACCAC GGATGTGGATGAACTCGCGGCTTATTCTGCCCGCGTCGGCCCGTCGTTCGATGGGCATGACGTCACTTTTCTCGCCGCTT ATGGCGCGATGGAGAATTTGGAGGGGTCGCCGATCGAAGGCGCCGTCATCTTGCGGTTCCCCACGATGCAAGCCGCGCAT GACTGGTATCATAGCCCCGCCTACCAAGCTGTTGCTGCGCATCGCTTCGCCGGTGCCCGCTACCGCGGGTTTATCGTCGA GGGGCTGCGTTGA
Upstream 100 bases:
>100_bases TCTCCGGAGGCACTTATCAGCAGGACCAGGATGCCTGCGTTGAGGCACTCCAGAAAATCGGGTTCGAACTGCCAGCCTGA CGACTGTCAGGCCATCGTCG
Downstream 100 bases:
>100_bases CTCCCCCGCATTATAATGGCGGTACTGACCAAGAGCTGTGCGCCCAAACACCAACACCGGGAGTTTCTAAATGATCGAGG CCGAGGCACGCATCGCTACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MAMAGRSHLAKDLMMEAFVVFTREDTTDVDELAAYSARVGPSFDGHDVTFLAAYGAMENLEGSPIEGAVILRFPTMQAAH DWYHSPAYQAVAAHRFAGARYRGFIVEGLR
Sequences:
>Translated_110_residues MAMAGRSHLAKDLMMEAFVVFTREDTTDVDELAAYSARVGPSFDGHDVTFLAAYGAMENLEGSPIEGAVILRFPTMQAAH DWYHSPAYQAVAAHRFAGARYRGFIVEGLR >Mature_109_residues AMAGRSHLAKDLMMEAFVVFTREDTTDVDELAAYSARVGPSFDGHDVTFLAAYGAMENLEGSPIEGAVILRFPTMQAAHD WYHSPAYQAVAAHRFAGARYRGFIVEGLR
Specific function: Unknown
COG id: COG5470
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12099; Mature: 11968
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMAGRSHLAKDLMMEAFVVFTREDTTDVDELAAYSARVGPSFDGHDVTFLAAYGAMENL CCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCC EGSPIEGAVILRFPTMQAAHDWYHSPAYQAVAAHRFAGARYRGFIVEGLR CCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCC >Mature Secondary Structure AMAGRSHLAKDLMMEAFVVFTREDTTDVDELAAYSARVGPSFDGHDVTFLAAYGAMENL CCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCC EGSPIEGAVILRFPTMQAAHDWYHSPAYQAVAAHRFAGARYRGFIVEGLR CCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA