| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485570
Identifier: 103485570
GI number: 103485570
Start: 78229
End: 79272
Strand: Reverse
Name: 103485570
Synonym: Sala_0072
Alternate gene names: NA
Gene position: 79272-78229 (Counterclockwise)
Preceding gene: 103485571
Following gene: 103485568
Centisome position: 2.37
GC content: 63.7
Gene sequence:
>1044_bases ATGTCCGGCTTGCCGCTGCGCGCAAAGGATGCTGCTTTCCGGGTGCCGGTCGTCGACTCGCTCACGCTGACCGTTCTCAC CGACAGCGGGACATTCGGACCTTTTCTTCCCGATCTGGACCTGCCCGGTCTAAAGGTGTTGCGTGCCGGCAACGGAAGCC CTCCAGGCTACACCCGCATGTCGCCCAAAGCCTTGATGGGGGAGTTCGGTCTTTCCCTGCTCGCGGATTCGCGCGTCGGA GACGCGTCACGCCGGGTGCTCGTCGACTTCGGCTACACGGCTGAGGTCCTCGCCAACAATATGGGGATGCTCGGTATCGA TCCATCGAGCATCGACGCGTCCGTGCTGAGCCATGGGCACCTCGATCACTACGGCGGCTTTCCTGCCATGACCGGCAGCG CAGAAAAACGCGGTCGTCCGCTGCCGCTCTACGTCGGCGGGGAGGAAACCTTCTGCGAGCGGGTCGCGATGATCGGCGAT CCGCCGCCGGTGATGGGCATTCTAGATCGCGCGGCGCTGACCAAAGCCGGTTACGAAGTCCGCATCTCGCCGACGCCTCA GATCGTCGCCGATCAGGCGTTCACGACCGGGATCATCCCGCTCGAGACATTCGAGCGCACCGCGATCCCGACGCGGATGC GGCCCGGAGCCGGCTGCGAGCGGACCGGACTGCGCAGCGACAAGCGTGATCTGGCCGAAGTCACCGACGACGGCGAGCAT GAGCTCGCCACCTGCTATGCCATCAAGGGACTTGGCTTGGTGGTGATTGCATCGTGTAGCCATCGCGGCGTCCTCAATTC GGTCCGGCGCGCGCAGGCGATCAGCGGCATTTCAAAGGTGCAAATGGTGATCGGCGGCTTCCATCTCGTCCGCCCGCGCA CCGAGGAGGAGGCGCGGCAGACCGTCTCAGCGTTCAAGGTGATCGATCCCGACTATATCGTGCCGATGCACTGCACCGGC GAGGTCTTTATCGAGGAAGCCATCCGGCAGATGCCCTCAAAGGTCATCCGTCCCTATGTCGGTACGCGCTTAGCAATGGC ATGA
Upstream 100 bases:
>100_bases GAGTAGCGTCCGGCGAAATTCGGAGGTGCAGATGACGGTCGAAGCCCTGGGACTATTCACACGTCGATCGATGCTGGCCG GGGCCATCGGGGCGGCGGCG
Downstream 100 bases:
>100_bases AGGCAAAAATTGGCCGGTAGGAGACTGACCGCTTCTTGGCACCGAACCGGGTATAGCGGACCTTGCCAATGTGACGAACG TCAAAGAGTGCGGCGGCCGC
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MSGLPLRAKDAAFRVPVVDSLTLTVLTDSGTFGPFLPDLDLPGLKVLRAGNGSPPGYTRMSPKALMGEFGLSLLADSRVG DASRRVLVDFGYTAEVLANNMGMLGIDPSSIDASVLSHGHLDHYGGFPAMTGSAEKRGRPLPLYVGGEETFCERVAMIGD PPPVMGILDRAALTKAGYEVRISPTPQIVADQAFTTGIIPLETFERTAIPTRMRPGAGCERTGLRSDKRDLAEVTDDGEH ELATCYAIKGLGLVVIASCSHRGVLNSVRRAQAISGISKVQMVIGGFHLVRPRTEEEARQTVSAFKVIDPDYIVPMHCTG EVFIEEAIRQMPSKVIRPYVGTRLAMA
Sequences:
>Translated_347_residues MSGLPLRAKDAAFRVPVVDSLTLTVLTDSGTFGPFLPDLDLPGLKVLRAGNGSPPGYTRMSPKALMGEFGLSLLADSRVG DASRRVLVDFGYTAEVLANNMGMLGIDPSSIDASVLSHGHLDHYGGFPAMTGSAEKRGRPLPLYVGGEETFCERVAMIGD PPPVMGILDRAALTKAGYEVRISPTPQIVADQAFTTGIIPLETFERTAIPTRMRPGAGCERTGLRSDKRDLAEVTDDGEH ELATCYAIKGLGLVVIASCSHRGVLNSVRRAQAISGISKVQMVIGGFHLVRPRTEEEARQTVSAFKVIDPDYIVPMHCTG EVFIEEAIRQMPSKVIRPYVGTRLAMA >Mature_346_residues SGLPLRAKDAAFRVPVVDSLTLTVLTDSGTFGPFLPDLDLPGLKVLRAGNGSPPGYTRMSPKALMGEFGLSLLADSRVGD ASRRVLVDFGYTAEVLANNMGMLGIDPSSIDASVLSHGHLDHYGGFPAMTGSAEKRGRPLPLYVGGEETFCERVAMIGDP PPVMGILDRAALTKAGYEVRISPTPQIVADQAFTTGIIPLETFERTAIPTRMRPGAGCERTGLRSDKRDLAEVTDDGEHE LATCYAIKGLGLVVIASCSHRGVLNSVRRAQAISGISKVQMVIGGFHLVRPRTEEEARQTVSAFKVIDPDYIVPMHCTGE VFIEEAIRQMPSKVIRPYVGTRLAMA
Specific function: Catalyzes the condensation of 6-hydroxymethyl-7,8- dihydropterin pyrophosphate (DHPP) with 4-(beta-D-ribofuranosyl)- aminobenzene-5'-phosphate (beta-RFA-P) to form 7,8-dihydropterin- 6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate, a precursor
COG id: COG1237
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily II
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 37221; Mature: 37090
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLPLRAKDAAFRVPVVDSLTLTVLTDSGTFGPFLPDLDLPGLKVLRAGNGSPPGYTRM CCCCCCCCCCCEEECCEECCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC SPKALMGEFGLSLLADSRVGDASRRVLVDFGYTAEVLANNMGMLGIDPSSIDASVLSHGH CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCCEEECCCCHHHHHHHHCCC LDHYGGFPAMTGSAEKRGRPLPLYVGGEETFCERVAMIGDPPPVMGILDRAALTKAGYEV CHHCCCCCCCCCCHHHCCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEE RISPTPQIVADQAFTTGIIPLETFERTAIPTRMRPGAGCERTGLRSDKRDLAEVTDDGEH EECCCCCHHHCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC ELATCYAIKGLGLVVIASCSHRGVLNSVRRAQAISGISKVQMVIGGFHLVRPRTEEEARQ HHEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHH TVSAFKVIDPDYIVPMHCTGEVFIEEAIRQMPSKVIRPYVGTRLAMA HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SGLPLRAKDAAFRVPVVDSLTLTVLTDSGTFGPFLPDLDLPGLKVLRAGNGSPPGYTRM CCCCCCCCCCEEECCEECCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC SPKALMGEFGLSLLADSRVGDASRRVLVDFGYTAEVLANNMGMLGIDPSSIDASVLSHGH CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCCEEECCCCHHHHHHHHCCC LDHYGGFPAMTGSAEKRGRPLPLYVGGEETFCERVAMIGDPPPVMGILDRAALTKAGYEV CHHCCCCCCCCCCHHHCCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEE RISPTPQIVADQAFTTGIIPLETFERTAIPTRMRPGAGCERTGLRSDKRDLAEVTDDGEH EECCCCCHHHCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC ELATCYAIKGLGLVVIASCSHRGVLNSVRRAQAISGISKVQMVIGGFHLVRPRTEEEARQ HHEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHH TVSAFKVIDPDYIVPMHCTGEVFIEEAIRQMPSKVIRPYVGTRLAMA HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]