| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485568
Identifier: 103485568
GI number: 103485568
Start: 76846
End: 77403
Strand: Reverse
Name: 103485568
Synonym: Sala_0070
Alternate gene names: NA
Gene position: 77403-76846 (Counterclockwise)
Preceding gene: 103485570
Following gene: 103485567
Centisome position: 2.31
GC content: 59.68
Gene sequence:
>558_bases ATGCGAGCCCGGCCAATCTTGGTTTCAATATGTCTGATCAGCATGCCAGCACAGGCGGCAGAAAAAACGACCTATGGGTG GTGCGAACGGCGCGAACCGACGGACATATATCGCATGTCAGGGCTCATGCAGAAATCGCCGAGCACGTCCACGGTCGACA TCGAGAACGCTTTTCGCGCTTCTCTTGGAACCGAAGAGAGCGTCACCTGCTGGTTCTATTATTCCAGCCCCAGCGAAGGC GAAGACTATTTCAACCGGCGGCAGTACGTGATCGCGACCGAGGAGAAGCGCCAGTTCACACTAACAGGATGGACCGGTCC CTATGCGATCACCGGCAAGCCGGCGCCTAAACCCGCCGGAGCCGTTCTGACGGTAGAAGCGGCCCCTGTCGCACAGCCTG ATGCAGAAGCGGCAGCGCGGGCCGCAATAATCGTGCAGCGCCGCGAAGTGGATGCTCGCGTCGGTGCGGCAGCCCGTGCC GCGCAAGCAGATGCTGAATATCAAGCAAAGCTCAGCAAGTTTTTCGAGGAACTGCGCCGCCGAGGACGCGCCCAATGA
Upstream 100 bases:
>100_bases CGCGACTTACGGTCCGGCGTTTTGCTTAGCGGCTACCCGCCATATTTCCAAATTGCTTCGCTACGACGTGTCGGTTAGCC CGGAGCCGGGAGAAATGCCT
Downstream 100 bases:
>100_bases AGGCCTTTCTGGCTGCGGCCAGCCTTTTTGCGATCCCGATAGCCGGTGCGCAGGTGCCTACGGGTAGCGCGCAGACGTTC CCCGATCTGCGCGAGACGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MRARPILVSICLISMPAQAAEKTTYGWCERREPTDIYRMSGLMQKSPSTSTVDIENAFRASLGTEESVTCWFYYSSPSEG EDYFNRRQYVIATEEKRQFTLTGWTGPYAITGKPAPKPAGAVLTVEAAPVAQPDAEAAARAAIIVQRREVDARVGAAARA AQADAEYQAKLSKFFEELRRRGRAQ
Sequences:
>Translated_185_residues MRARPILVSICLISMPAQAAEKTTYGWCERREPTDIYRMSGLMQKSPSTSTVDIENAFRASLGTEESVTCWFYYSSPSEG EDYFNRRQYVIATEEKRQFTLTGWTGPYAITGKPAPKPAGAVLTVEAAPVAQPDAEAAARAAIIVQRREVDARVGAAARA AQADAEYQAKLSKFFEELRRRGRAQ >Mature_185_residues MRARPILVSICLISMPAQAAEKTTYGWCERREPTDIYRMSGLMQKSPSTSTVDIENAFRASLGTEESVTCWFYYSSPSEG EDYFNRRQYVIATEEKRQFTLTGWTGPYAITGKPAPKPAGAVLTVEAAPVAQPDAEAAARAAIIVQRREVDARVGAAARA AQADAEYQAKLSKFFEELRRRGRAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20491; Mature: 20491
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRARPILVSICLISMPAQAAEKTTYGWCERREPTDIYRMSGLMQKSPSTSTVDIENAFRA CCCCHHHHHHHHHHCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHH SLGTEESVTCWFYYSSPSEGEDYFNRRQYVIATEEKRQFTLTGWTGPYAITGKPAPKPAG HCCCCCCEEEEEEECCCCCCHHHHCCCEEEEEECCCCEEEEECCCCCEEECCCCCCCCCC AVLTVEAAPVAQPDAEAAARAAIIVQRREVDARVGAAARAAQADAEYQAKLSKFFEELRR EEEEEECCCCCCCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH RGRAQ HCCCC >Mature Secondary Structure MRARPILVSICLISMPAQAAEKTTYGWCERREPTDIYRMSGLMQKSPSTSTVDIENAFRA CCCCHHHHHHHHHHCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHH SLGTEESVTCWFYYSSPSEGEDYFNRRQYVIATEEKRQFTLTGWTGPYAITGKPAPKPAG HCCCCCCEEEEEEECCCCCCHHHHCCCEEEEEECCCCEEEEECCCCCEEECCCCCCCCCC AVLTVEAAPVAQPDAEAAARAAIIVQRREVDARVGAAARAAQADAEYQAKLSKFFEELRR EEEEEECCCCCCCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH RGRAQ HCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA