Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485529

Identifier: 103485529

GI number: 103485529

Start: 30847

End: 31545

Strand: Reverse

Name: 103485529

Synonym: Sala_0031

Alternate gene names: NA

Gene position: 31545-30847 (Counterclockwise)

Preceding gene: 103485530

Following gene: 103485527

Centisome position: 0.94

GC content: 67.81

Gene sequence:

>699_bases
ATGACCGACATGTCGGCCACCAACATCGTCTTCCTGCTGTTTCCCGGCGTCACCCAGCTCGATTTCACCGCGCCCGCGCA
AGCGCTGAGCCGGATGCCGGGCGCGGTTGTCGCAGGGGCCGCCTCCAGCCTTGCCCCGATCGCGACCGACAGCGGCTTTG
CAATCGTGCCGACGCACGATTTCGCCTCTGCGCCGCAGGCCGATATCTTGTGCGTGCCGGGCGGGCATGGCGTCGCCGAG
GCGCTGGGTGATGCCGCGACGATTCATTTCATCGCCCGGCAGGCCGCGCGCGCCGCATGGGTCACAAGCGTCTGCACGGG
CGCCTTCCTGCTCGGGCGCGCGGGGCTGCTCGCGGGCAAACGCGCGACGACACATTGGGCTTATACGCATTTGCTGCCGC
TGGTCGGTGCCGAACATCAACCGGGCCGCGTCGTCGAGGATGGACAGATCGTGACGAGTGGCGGCGTTACGTCGGGGCTC
GATTTTGCGTTGACGCTGATCGCCAGACTGAAAGGAGCGGCGGTGGCGCAGGCGATCCAGCTCGCAATCGAATATGATCC
CGCGCCGCCCTTCGCCGGCGGCCATCCGGACCGCGCACCCGACGCGGTGACGACCGGGCTGAAACAGCGTGTCTATGACG
CCGCCGCTGCACGCATGGAGGCGGCGCTTCGCGGCGAGGGCGTGATCGTCTTGGATTGA

Upstream 100 bases:

>100_bases
AACTGACGCTTGAGGATGGAGTCCTGTCGGCAAGCAGGGCGGACCCTTTTGGCCTCCAGCCGCGCGCCTGGGTGATCCAT
GATCTGCGAAGGACCATCCG

Downstream 100 bases:

>100_bases
AGCGTACCGGTCGTTCCCGAGATAGTTTGCGCATTCGTTTGGTGCGAAGGCGGCGAGCAGACCGGCGCGTTTCCAACTTG
TATCGACGGATCGTTCGTTT

Product: ThiJ/PfpI

Products: NA

Alternate protein names: ThiJ/PfpI Domain Protein; ThiJ/PfpI Family Protein; ThiJ/PfpI; AraC Family Transcriptional Regulator; DJ-1/PfpI Family Protein; Transcriptional Regulator; Isonitrile Hydratase; ThiJ Family Protein; Transcriptional Regulator AraC Family; DJ-1/PfpI Family; AraC Family Transcription Regulator; Transcription Regulator Protein; DJ-1/PfpI Superfamily Protein; Twin-Arginine Translocation Pathway Signal; PfpI Family Protein; Cyclohexyl-Isocyanide Hydratase; Hydratase; ThiH/PfpI Family Amidotransferase; ADPA-Family Transcriptional Regulator; ADPA Family Transcriptional Regulator; Intracellular Protease/Amidase; Transcriptional Regulatory Protein; Transcriptional Regulator DarR; Thij/Pfpi Family Protein; Transcription Regulator Protein ThiJ/PfpI; Transcriptional Regulator Protein Thij/Pfpi; Transcriptional Regulator Protein; ThiJ/PfpI Family Transcriptional Regulator Protein; DsbA Family ThiolDisulfide Interchange Protein; Transcription Regulator Protein Thij/Pfpi; Transcriptional Regulator ThiJ/PfpI Family Protein; ThiJ/PfpI Family Transcriptional Regulator

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHDFASAPQADILCVPGGHGVAE
ALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGKRATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGL
DFALTLIARLKGAAVAQAIQLAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD

Sequences:

>Translated_232_residues
MTDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHDFASAPQADILCVPGGHGVAE
ALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGKRATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGL
DFALTLIARLKGAAVAQAIQLAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD
>Mature_231_residues
TDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHDFASAPQADILCVPGGHGVAEA
LGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGKRATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGLD
FALTLIARLKGAAVAQAIQLAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD

Specific function: Unknown

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI24653499, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23655; Mature: 23524

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHD
CCCCCCCCEEEEEECCCCEECCCCHHHHHHHCCCCEEECCCCCCCCEECCCCEEEEECCC
FASAPQADILCVPGGHGVAEALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGK
CCCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGLDFALTLIARLKGAAVAQAIQ
CCCHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH
LAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD
HEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure 
TDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHD
CCCCCCCEEEEEECCCCEECCCCHHHHHHHCCCCEEECCCCCCCCEECCCCEEEEECCC
FASAPQADILCVPGGHGVAEALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGK
CCCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGLDFALTLIARLKGAAVAQAIQ
CCCHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH
LAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD
HEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA