| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485529
Identifier: 103485529
GI number: 103485529
Start: 30847
End: 31545
Strand: Reverse
Name: 103485529
Synonym: Sala_0031
Alternate gene names: NA
Gene position: 31545-30847 (Counterclockwise)
Preceding gene: 103485530
Following gene: 103485527
Centisome position: 0.94
GC content: 67.81
Gene sequence:
>699_bases ATGACCGACATGTCGGCCACCAACATCGTCTTCCTGCTGTTTCCCGGCGTCACCCAGCTCGATTTCACCGCGCCCGCGCA AGCGCTGAGCCGGATGCCGGGCGCGGTTGTCGCAGGGGCCGCCTCCAGCCTTGCCCCGATCGCGACCGACAGCGGCTTTG CAATCGTGCCGACGCACGATTTCGCCTCTGCGCCGCAGGCCGATATCTTGTGCGTGCCGGGCGGGCATGGCGTCGCCGAG GCGCTGGGTGATGCCGCGACGATTCATTTCATCGCCCGGCAGGCCGCGCGCGCCGCATGGGTCACAAGCGTCTGCACGGG CGCCTTCCTGCTCGGGCGCGCGGGGCTGCTCGCGGGCAAACGCGCGACGACACATTGGGCTTATACGCATTTGCTGCCGC TGGTCGGTGCCGAACATCAACCGGGCCGCGTCGTCGAGGATGGACAGATCGTGACGAGTGGCGGCGTTACGTCGGGGCTC GATTTTGCGTTGACGCTGATCGCCAGACTGAAAGGAGCGGCGGTGGCGCAGGCGATCCAGCTCGCAATCGAATATGATCC CGCGCCGCCCTTCGCCGGCGGCCATCCGGACCGCGCACCCGACGCGGTGACGACCGGGCTGAAACAGCGTGTCTATGACG CCGCCGCTGCACGCATGGAGGCGGCGCTTCGCGGCGAGGGCGTGATCGTCTTGGATTGA
Upstream 100 bases:
>100_bases AACTGACGCTTGAGGATGGAGTCCTGTCGGCAAGCAGGGCGGACCCTTTTGGCCTCCAGCCGCGCGCCTGGGTGATCCAT GATCTGCGAAGGACCATCCG
Downstream 100 bases:
>100_bases AGCGTACCGGTCGTTCCCGAGATAGTTTGCGCATTCGTTTGGTGCGAAGGCGGCGAGCAGACCGGCGCGTTTCCAACTTG TATCGACGGATCGTTCGTTT
Product: ThiJ/PfpI
Products: NA
Alternate protein names: ThiJ/PfpI Domain Protein; ThiJ/PfpI Family Protein; ThiJ/PfpI; AraC Family Transcriptional Regulator; DJ-1/PfpI Family Protein; Transcriptional Regulator; Isonitrile Hydratase; ThiJ Family Protein; Transcriptional Regulator AraC Family; DJ-1/PfpI Family; AraC Family Transcription Regulator; Transcription Regulator Protein; DJ-1/PfpI Superfamily Protein; Twin-Arginine Translocation Pathway Signal; PfpI Family Protein; Cyclohexyl-Isocyanide Hydratase; Hydratase; ThiH/PfpI Family Amidotransferase; ADPA-Family Transcriptional Regulator; ADPA Family Transcriptional Regulator; Intracellular Protease/Amidase; Transcriptional Regulatory Protein; Transcriptional Regulator DarR; Thij/Pfpi Family Protein; Transcription Regulator Protein ThiJ/PfpI; Transcriptional Regulator Protein Thij/Pfpi; Transcriptional Regulator Protein; ThiJ/PfpI Family Transcriptional Regulator Protein; DsbA Family ThiolDisulfide Interchange Protein; Transcription Regulator Protein Thij/Pfpi; Transcriptional Regulator ThiJ/PfpI Family Protein; ThiJ/PfpI Family Transcriptional Regulator
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MTDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHDFASAPQADILCVPGGHGVAE ALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGKRATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGL DFALTLIARLKGAAVAQAIQLAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD
Sequences:
>Translated_232_residues MTDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHDFASAPQADILCVPGGHGVAE ALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGKRATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGL DFALTLIARLKGAAVAQAIQLAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD >Mature_231_residues TDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHDFASAPQADILCVPGGHGVAEA LGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGKRATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGLD FALTLIARLKGAAVAQAIQLAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI24653499, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23655; Mature: 23524
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHD CCCCCCCCEEEEEECCCCEECCCCHHHHHHHCCCCEEECCCCCCCCEECCCCEEEEECCC FASAPQADILCVPGGHGVAEALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGK CCCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGLDFALTLIARLKGAAVAQAIQ CCCHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH LAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD HEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC >Mature Secondary Structure TDMSATNIVFLLFPGVTQLDFTAPAQALSRMPGAVVAGAASSLAPIATDSGFAIVPTHD CCCCCCCEEEEEECCCCEECCCCHHHHHHHCCCCEEECCCCCCCCEECCCCEEEEECCC FASAPQADILCVPGGHGVAEALGDAATIHFIARQAARAAWVTSVCTGAFLLGRAGLLAGK CCCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RATTHWAYTHLLPLVGAEHQPGRVVEDGQIVTSGGVTSGLDFALTLIARLKGAAVAQAIQ CCCHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH LAIEYDPAPPFAGGHPDRAPDAVTTGLKQRVYDAAAARMEAALRGEGVIVLD HEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA