Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is iutA [H]

Identifier: 103485527

GI number: 103485527

Start: 25868

End: 28018

Strand: Reverse

Name: iutA [H]

Synonym: Sala_0029

Alternate gene names: 103485527

Gene position: 28018-25868 (Counterclockwise)

Preceding gene: 103485529

Following gene: 103485526

Centisome position: 0.84

GC content: 67.13

Gene sequence:

>2151_bases
ATGAATCGCAAATGGCTCGCCGCCGCCCTGCTTTCGGGCGCGCTTCCCTTCCCCGCACTGGCGCAGGACGCGCCGCCTGT
CGACGAAGCGCTGGCGGGGGACGCGGGCGAAACGATCATCGTGACCGCCGCGCGCACCATCCTGCCGCCAAACGCGCTGC
CGCTGACGATCGACATCATCGAAAAGGATGCGCTCGACCAGCAGATCGCGATTGCCGGTTCGGTCACCGACGCGGTTGCG
ACCCTCAGCCCCAGCTTCTCGCCGACGCGGCAGAAGCTGTCGGGCGCGGGCGAAACGCTGCGCGGGCGCTCGCCGCTCTA
TGCGATCAACGGCATCCCGCAATCGACCCCGCTGCGCGACGGCAGCCGCGACGGCTTCACCATCGACGGCTTTTTCGTCG
ATCGGGTGGAACTGATCTTCGGATCGAACGCCTTGCAGGGGATCGGCGGCACCGGCGGCATCGTCAACCAGGTGACGGTC
GGCGCGCCGACCGACGAAGGCGTTTCGGGCCGCGCGCTGCTTCAGGCGAGCGCCGACAATGATTTTTCCGACGAAGGCAT
GGGCGGCAAGGTCGCGGGCCTCGTCCAGTACAAGGCGGGGCGCTTCGACGCCTCGGTCGGCGCCGCCTGGGAACGCCGCG
GCGTCTTTTTCGACGGCGAGGGCCGCCGCGTCGGCATCAACCTGACGCAGGGCGAGACGCAGGATTCGGAGACGCTCTCG
CTGTTCGGCCGCTTTGGTTACGCCGTGACCGACACGATGCGGCTCGACCTGATCGCCAGCCGCTTCGAGCTGGAAGGCGA
CGGCGACTATGCCGCGGTCGCGGGCAACAAGGCCGCGGGCCTGCCGACGAGCGCACGGCCGGGGACGCCGCCGGGCGTCC
CCGCCACGAACCGCACCGAAAGCGTCTCGCTGTCGCTGACCGACAGCAATTTGGGCGGCGGCAATTTCATCAGCCAGATT
TTCTGGAACCGCAGCCGCGACACCTTCGGCGGCGAACCCAATCCGATCGCGACCTTTCAGGACGCGGCGATCGCCCCCAT
CGGCACCCTGTTCGACCAGTCACAGAACCGCAGCCGCAAATATGGCGGCAAGCTGAGCTATGAGCGCGCCGTGCCGGGGC
TCGAGGCGCTGACGCTGATCGCGGGCTTCGACGCGCTGTGGGATTCGACCGAGCAGCGGCTGATCGCGACCGACCGCGTC
TGGGTTCCGCCGACCGATTTTCGCAGCCTTGCGCCCTTCGGCCAGGCGAACCTCCAGCTTGCGGGCGGGCTCGTCCGCCT
CGCGGGCGGCGTGCGCTACGAAAATGTGAAGATCAGCATCGACGATTACACGACGCTGGCCTCCGCGGGCCGCACCTTCG
TTTCGGGCGGCAGCCCGACCTTCGACGACGTGCTGCTGAACGGCGGCGTCATCGTCGAGCCCATGCCCGGCATCCGCGCC
TATGCGAGCTATGCCGAGGGATATACGGTGCCCGACGTCGGCCGCATCACGCGCGCGGTGCGCACCCCCGGCGTCGACAT
CGACAGCTTCCTCGACATCTCGCCCATCGTCTCGAACAACCGCGAGCTGGGCGTCGAGGTGAAGCGCGGCCCGCTCGACG
CCAGCGCGACCTATTTCTGGTCGTCGAGCAAGAAGGGGCAATTGCTCATCGCGCGTCCCGACGGCATTTTCGACGTCCAG
CGCCAGCGCGTCGAAATCGAGGGGCTGGAAATCAACCTGGCGGTCAAGATGCCGATCGACGGGCTGACGCTGTCGGCGGG
CTATGCGCATATCGTCGGCCAGTTCGACGATGACGCGGACGGGCTGGTCGAAACCGACCTCGACGGCGCGAACATCTCGC
CCGACCGGCTGAACCTCGCTGCGGCCTATGCGAACGGTCCCTTGTCGGCGCGGGTGCAGACGCAATTCTATCTGGCGCGG
ACCTTCCGCGGCCCGAACCGCGACGCGCGCAACGATTTCGAGGGCTACAATCTGACCGATGCGATCGTCCGCTATCAGAC
CAGCCTCGGCGGGGTGAGCCTCGCGGTGTCGAACCTGTTCGACCGGCAATATATCAGCTACGCGAGCGACACCCAGCGGC
CGACCGACAATTTCTTCAATTTTGCCGGGCGCGGCCGCACCTTCACGCTCGGCTGGGATTATCGCTTTTAA

Upstream 100 bases:

>100_bases
GCCAATGTCCGCAAGCGGCCCATGCATCTTGCCTCCGCACGATTCCCCTTGCCTTTGCGAATGTGTCGCACTAGCGGCCA
CTGCCGAACAGGAGTTGATA

Downstream 100 bases:

>100_bases
ATGATGAAACTGCTCGACACGCTGCACCGCTGGACGGGGGGGCTCATCGGCCTGGTGCTCGCGCTGCTCGGCCTGTCGGG
CACGATCCTGCTTTACGAGC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Cloacin receptor [H]

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDIIEKDALDQQIAIAGSVTDAVA
TLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRDGSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTV
GAPTDEGVSGRALLQASADNDFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS
LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTESVSLSLTDSNLGGGNFISQI
FWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRKYGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRV
WVPPTDFRSLAPFGQANLQLAGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA
YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFWSSSKKGQLLIARPDGIFDVQ
RQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDADGLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLAR
TFRGPNRDARNDFEGYNLTDAIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF

Sequences:

>Translated_716_residues
MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDIIEKDALDQQIAIAGSVTDAVA
TLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRDGSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTV
GAPTDEGVSGRALLQASADNDFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS
LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTESVSLSLTDSNLGGGNFISQI
FWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRKYGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRV
WVPPTDFRSLAPFGQANLQLAGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA
YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFWSSSKKGQLLIARPDGIFDVQ
RQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDADGLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLAR
TFRGPNRDARNDFEGYNLTDAIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF
>Mature_716_residues
MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDIIEKDALDQQIAIAGSVTDAVA
TLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRDGSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTV
GAPTDEGVSGRALLQASADNDFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS
LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTESVSLSLTDSNLGGGNFISQI
FWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRKYGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRV
WVPPTDFRSLAPFGQANLQLAGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA
YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFWSSSKKGQLLIARPDGIFDVQ
RQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDADGLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLAR
TFRGPNRDARNDFEGYNLTDAIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF

Specific function: Receptor for cloacin DF13/aerobactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76385; Mature: 76385

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDII
CCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEEEE
EKDALDQQIAIAGSVTDAVATLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRD
CCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC
GSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTVGAPTDEGVSGRALLQASADN
CCCCCEEEEEEEEEEEEEEECCCHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC
DFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS
CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCCCHHHH
LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTE
HHHHHCEEEECCEEEEEEEEHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
SVSLSLTDSNLGGGNFISQIFWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRK
EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHCCCCCHHHH
YGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRVWVPPTDFRSLAPFGQANLQL
CCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECEEECCCCCCHHCCCCCCCCEEE
AGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA
CCCEEECCCCEEEEEEEEEECCCHHHHHCCCEEECCCCCCHHHHEECCCEEEECCCCHHH
YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFW
HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHCCCCHHHCCCCEECEEEECCCCCCCEEEEE
SSSKKGQLLIARPDGIFDVQRQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDAD
CCCCCCCEEEECCCCCCHHCCCEEEEEEEEEEEEEECCCCCEEECCCCEEEEECCCCCCC
GLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLARTFRGPNRDARNDFEGYNLTD
CEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHH
AIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCC
>Mature Secondary Structure
MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDII
CCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEEEE
EKDALDQQIAIAGSVTDAVATLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRD
CCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC
GSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTVGAPTDEGVSGRALLQASADN
CCCCCEEEEEEEEEEEEEEECCCHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC
DFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS
CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCCCHHHH
LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTE
HHHHHCEEEECCEEEEEEEEHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
SVSLSLTDSNLGGGNFISQIFWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRK
EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHCCCCCHHHH
YGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRVWVPPTDFRSLAPFGQANLQL
CCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECEEECCCCCCHHCCCCCCCCEEE
AGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA
CCCEEECCCCEEEEEEEEEECCCHHHHHCCCEEECCCCCCHHHHEECCCEEEECCCCHHH
YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFW
HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHCCCCHHHCCCCEECEEEECCCCCCCEEEEE
SSSKKGQLLIARPDGIFDVQRQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDAD
CCCCCCCEEEECCCCCCHHCCCEEEEEEEEEEEEEECCCCCEEECCCCEEEEECCCCCCC
GLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLARTFRGPNRDARNDFEGYNLTD
CEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHH
AIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA