| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is iutA [H]
Identifier: 103485527
GI number: 103485527
Start: 25868
End: 28018
Strand: Reverse
Name: iutA [H]
Synonym: Sala_0029
Alternate gene names: 103485527
Gene position: 28018-25868 (Counterclockwise)
Preceding gene: 103485529
Following gene: 103485526
Centisome position: 0.84
GC content: 67.13
Gene sequence:
>2151_bases ATGAATCGCAAATGGCTCGCCGCCGCCCTGCTTTCGGGCGCGCTTCCCTTCCCCGCACTGGCGCAGGACGCGCCGCCTGT CGACGAAGCGCTGGCGGGGGACGCGGGCGAAACGATCATCGTGACCGCCGCGCGCACCATCCTGCCGCCAAACGCGCTGC CGCTGACGATCGACATCATCGAAAAGGATGCGCTCGACCAGCAGATCGCGATTGCCGGTTCGGTCACCGACGCGGTTGCG ACCCTCAGCCCCAGCTTCTCGCCGACGCGGCAGAAGCTGTCGGGCGCGGGCGAAACGCTGCGCGGGCGCTCGCCGCTCTA TGCGATCAACGGCATCCCGCAATCGACCCCGCTGCGCGACGGCAGCCGCGACGGCTTCACCATCGACGGCTTTTTCGTCG ATCGGGTGGAACTGATCTTCGGATCGAACGCCTTGCAGGGGATCGGCGGCACCGGCGGCATCGTCAACCAGGTGACGGTC GGCGCGCCGACCGACGAAGGCGTTTCGGGCCGCGCGCTGCTTCAGGCGAGCGCCGACAATGATTTTTCCGACGAAGGCAT GGGCGGCAAGGTCGCGGGCCTCGTCCAGTACAAGGCGGGGCGCTTCGACGCCTCGGTCGGCGCCGCCTGGGAACGCCGCG GCGTCTTTTTCGACGGCGAGGGCCGCCGCGTCGGCATCAACCTGACGCAGGGCGAGACGCAGGATTCGGAGACGCTCTCG CTGTTCGGCCGCTTTGGTTACGCCGTGACCGACACGATGCGGCTCGACCTGATCGCCAGCCGCTTCGAGCTGGAAGGCGA CGGCGACTATGCCGCGGTCGCGGGCAACAAGGCCGCGGGCCTGCCGACGAGCGCACGGCCGGGGACGCCGCCGGGCGTCC CCGCCACGAACCGCACCGAAAGCGTCTCGCTGTCGCTGACCGACAGCAATTTGGGCGGCGGCAATTTCATCAGCCAGATT TTCTGGAACCGCAGCCGCGACACCTTCGGCGGCGAACCCAATCCGATCGCGACCTTTCAGGACGCGGCGATCGCCCCCAT CGGCACCCTGTTCGACCAGTCACAGAACCGCAGCCGCAAATATGGCGGCAAGCTGAGCTATGAGCGCGCCGTGCCGGGGC TCGAGGCGCTGACGCTGATCGCGGGCTTCGACGCGCTGTGGGATTCGACCGAGCAGCGGCTGATCGCGACCGACCGCGTC TGGGTTCCGCCGACCGATTTTCGCAGCCTTGCGCCCTTCGGCCAGGCGAACCTCCAGCTTGCGGGCGGGCTCGTCCGCCT CGCGGGCGGCGTGCGCTACGAAAATGTGAAGATCAGCATCGACGATTACACGACGCTGGCCTCCGCGGGCCGCACCTTCG TTTCGGGCGGCAGCCCGACCTTCGACGACGTGCTGCTGAACGGCGGCGTCATCGTCGAGCCCATGCCCGGCATCCGCGCC TATGCGAGCTATGCCGAGGGATATACGGTGCCCGACGTCGGCCGCATCACGCGCGCGGTGCGCACCCCCGGCGTCGACAT CGACAGCTTCCTCGACATCTCGCCCATCGTCTCGAACAACCGCGAGCTGGGCGTCGAGGTGAAGCGCGGCCCGCTCGACG CCAGCGCGACCTATTTCTGGTCGTCGAGCAAGAAGGGGCAATTGCTCATCGCGCGTCCCGACGGCATTTTCGACGTCCAG CGCCAGCGCGTCGAAATCGAGGGGCTGGAAATCAACCTGGCGGTCAAGATGCCGATCGACGGGCTGACGCTGTCGGCGGG CTATGCGCATATCGTCGGCCAGTTCGACGATGACGCGGACGGGCTGGTCGAAACCGACCTCGACGGCGCGAACATCTCGC CCGACCGGCTGAACCTCGCTGCGGCCTATGCGAACGGTCCCTTGTCGGCGCGGGTGCAGACGCAATTCTATCTGGCGCGG ACCTTCCGCGGCCCGAACCGCGACGCGCGCAACGATTTCGAGGGCTACAATCTGACCGATGCGATCGTCCGCTATCAGAC CAGCCTCGGCGGGGTGAGCCTCGCGGTGTCGAACCTGTTCGACCGGCAATATATCAGCTACGCGAGCGACACCCAGCGGC CGACCGACAATTTCTTCAATTTTGCCGGGCGCGGCCGCACCTTCACGCTCGGCTGGGATTATCGCTTTTAA
Upstream 100 bases:
>100_bases GCCAATGTCCGCAAGCGGCCCATGCATCTTGCCTCCGCACGATTCCCCTTGCCTTTGCGAATGTGTCGCACTAGCGGCCA CTGCCGAACAGGAGTTGATA
Downstream 100 bases:
>100_bases ATGATGAAACTGCTCGACACGCTGCACCGCTGGACGGGGGGGCTCATCGGCCTGGTGCTCGCGCTGCTCGGCCTGTCGGG CACGATCCTGCTTTACGAGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cloacin receptor [H]
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDIIEKDALDQQIAIAGSVTDAVA TLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRDGSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTV GAPTDEGVSGRALLQASADNDFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTESVSLSLTDSNLGGGNFISQI FWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRKYGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRV WVPPTDFRSLAPFGQANLQLAGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFWSSSKKGQLLIARPDGIFDVQ RQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDADGLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLAR TFRGPNRDARNDFEGYNLTDAIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF
Sequences:
>Translated_716_residues MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDIIEKDALDQQIAIAGSVTDAVA TLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRDGSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTV GAPTDEGVSGRALLQASADNDFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTESVSLSLTDSNLGGGNFISQI FWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRKYGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRV WVPPTDFRSLAPFGQANLQLAGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFWSSSKKGQLLIARPDGIFDVQ RQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDADGLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLAR TFRGPNRDARNDFEGYNLTDAIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF >Mature_716_residues MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDIIEKDALDQQIAIAGSVTDAVA TLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRDGSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTV GAPTDEGVSGRALLQASADNDFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTESVSLSLTDSNLGGGNFISQI FWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRKYGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRV WVPPTDFRSLAPFGQANLQLAGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFWSSSKKGQLLIARPDGIFDVQ RQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDADGLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLAR TFRGPNRDARNDFEGYNLTDAIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF
Specific function: Receptor for cloacin DF13/aerobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76385; Mature: 76385
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDII CCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEEEE EKDALDQQIAIAGSVTDAVATLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRD CCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC GSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTVGAPTDEGVSGRALLQASADN CCCCCEEEEEEEEEEEEEEECCCHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC DFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCCCHHHH LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTE HHHHHCEEEECCEEEEEEEEHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC SVSLSLTDSNLGGGNFISQIFWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRK EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHCCCCCHHHH YGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRVWVPPTDFRSLAPFGQANLQL CCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECEEECCCCCCHHCCCCCCCCEEE AGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA CCCEEECCCCEEEEEEEEEECCCHHHHHCCCEEECCCCCCHHHHEECCCEEEECCCCHHH YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFW HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHCCCCHHHCCCCEECEEEECCCCCCCEEEEE SSSKKGQLLIARPDGIFDVQRQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDAD CCCCCCCEEEECCCCCCHHCCCEEEEEEEEEEEEEECCCCCEEECCCCEEEEECCCCCCC GLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLARTFRGPNRDARNDFEGYNLTD CEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHH AIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCC >Mature Secondary Structure MNRKWLAAALLSGALPFPALAQDAPPVDEALAGDAGETIIVTAARTILPPNALPLTIDII CCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEEEE EKDALDQQIAIAGSVTDAVATLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPLRD CCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC GSRDGFTIDGFFVDRVELIFGSNALQGIGGTGGIVNQVTVGAPTDEGVSGRALLQASADN CCCCCEEEEEEEEEEEEEEECCCHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC DFSDEGMGGKVAGLVQYKAGRFDASVGAAWERRGVFFDGEGRRVGINLTQGETQDSETLS CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCCCHHHH LFGRFGYAVTDTMRLDLIASRFELEGDGDYAAVAGNKAAGLPTSARPGTPPGVPATNRTE HHHHHCEEEECCEEEEEEEEHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC SVSLSLTDSNLGGGNFISQIFWNRSRDTFGGEPNPIATFQDAAIAPIGTLFDQSQNRSRK EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHCCCCCHHHH YGGKLSYERAVPGLEALTLIAGFDALWDSTEQRLIATDRVWVPPTDFRSLAPFGQANLQL CCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECEEECCCCCCHHCCCCCCCCEEE AGGLVRLAGGVRYENVKISIDDYTTLASAGRTFVSGGSPTFDDVLLNGGVIVEPMPGIRA CCCEEECCCCEEEEEEEEEECCCHHHHHCCCEEECCCCCCHHHHEECCCEEEECCCCHHH YASYAEGYTVPDVGRITRAVRTPGVDIDSFLDISPIVSNNRELGVEVKRGPLDASATYFW HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHCCCCHHHCCCCEECEEEECCCCCCCEEEEE SSSKKGQLLIARPDGIFDVQRQRVEIEGLEINLAVKMPIDGLTLSAGYAHIVGQFDDDAD CCCCCCCEEEECCCCCCHHCCCEEEEEEEEEEEEEECCCCCEEECCCCEEEEECCCCCCC GLVETDLDGANISPDRLNLAAAYANGPLSARVQTQFYLARTFRGPNRDARNDFEGYNLTD CEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHH AIVRYQTSLGGVSLAVSNLFDRQYISYASDTQRPTDNFFNFAGRGRTFTLGWDYRF HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA