LOCUS NC_011830 5279134 bp DNA circular BCT 01-APR-2010 DEFINITION Desulfitobacterium hafniense DCB-2, complete genome. ACCESSION NC_011830 VERSION NC_011830.1 GI:219666071 DBLINK Project:205 KEYWORDS . SOURCE Desulfitobacterium hafniense DCB-2 ORGANISM Desulfitobacterium hafniense DCB-2 Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium. REFERENCE 1 (bases 1 to 5279134) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Madsen,T., Christiansen,N., Ahring,B., Marsh,T., Harzman,C., Davis,J.K., Kim,S.-H. and Tiedje,J.M. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfitobacterium hafniense DCB-2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5279134) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JAN-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5279134) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Madsen,T., Christiansen,N., Ahring,B., Marsh,T., Harzman,C., Davis,J.K., Kim,S.-H. and Tiedje,J.M. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (29-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001336. URL -- http://www.jgi.doe.gov JGI Project ID: 2352519/4083484 Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu) Contacts: James Tiedje (tiedjej@msu.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5279134 /organism="Desulfitobacterium hafniense DCB-2" /mol_type="genomic DNA" /strain="DCB-2" /db_xref="taxon:272564" /note="type strain of Desulfitobacterium hafniense" gene 93..1442 /locus_tag="Dhaf_0001" /db_xref="GeneID:7261994" CDS 93..1442 /locus_tag="Dhaf_0001" /inference="protein motif:TFAM:TIGR00362" /note="KEGG: bld:BLi00001 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="YP_002456507.1" /db_xref="GI:219666072" /db_xref="InterPro:IPR001957" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013159" /db_xref="InterPro:IPR013317" /db_xref="GeneID:7261994" /translation="MPPRSLQVLWQETLSKLENELSKPSFETWLSSTYLLDIEGDTLI VSVPNEFAKDWLESRYAPIIRSTVQSILGQSMNLRFLVTSIHETTQPGDNQNKASSNS KAEPADNKTLNSKYTFDTFVIGNSNRFAHAAALAVAESPALAYNPLFIYGGVGLGKTH LMHAIGNAVIQRSPSTRVLYVSSEKFTNELIESIRDQNPIEFRNHYRNVDILLIDDIQ FLAGKEGTQEEFFHTFNALHDANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQP PDLETRIAILRKKAKLENLQVANEVMVYIADKIHSNIRELEGALIRVMAVGSLTSNPI TVETAAEALKDIIPVSTPKEITIEMIQQAVADFYHLSLGEFKAKKRTRAVAFPRQIAM YLSRELTDNSLPRIGDEFGGRDHTTVLHAYDKISESRQNDPLLDRKINEIIQMIQSL" gene 1698..2801 /locus_tag="Dhaf_0002" /db_xref="GeneID:7256946" CDS 1698..2801 /locus_tag="Dhaf_0002" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00663" /note="KEGG: drm:Dred_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain" /codon_start=1 /transl_table=11 /product="DNA polymerase III, beta subunit" /protein_id="YP_002456508.1" /db_xref="GI:219666073" /db_xref="InterPro:IPR001001" /db_xref="GeneID:7256946" /translation="MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIF EATDLEIGIRCVVPAQVEKEGVVVLPSRLFSDLVRKLPDVLIELELQNDVINIHYNES DLSLRGYDPEEFPLLPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQI EDGSLRLIATDTHRLAYRIAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFN QAQIVFQFGAVHLLSRLIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDG SHTSIIKLSVDTERLSIDQTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDSE EIVFELSGSYSPGIIRPVDDPNYLYLALPVRTS" gene 2816..3913 /locus_tag="Dhaf_0003" /db_xref="GeneID:7256947" CDS 2816..3913 /locus_tag="Dhaf_0003" /inference="protein motif:TFAM:TIGR00611" /note="TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bha:BH0004 recombination protein F" /codon_start=1 /transl_table=11 /product="DNA replication and repair protein RecF" /protein_id="YP_002456509.1" /db_xref="GI:219666074" /db_xref="InterPro:IPR001238" /db_xref="InterPro:IPR003395" /db_xref="GeneID:7256947" /translation="MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIY YLLTGKSYRVHREQELARWGENEFHLYGDFIVQRRKLRLESHYQDKRKIIKINQIPCR KLSEYVGTINVVFFSPDDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQK NALLKQGQGGSKSQIAQIELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGK EELTMDYHALGKNNLEEALAAFPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSAR LYGSQGQQRSIVLSTKLAELEVIRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ QTIMTMTSAETLTQRASLLLKVEKGQIGRIE" gene 3917..4174 /locus_tag="Dhaf_0004" /db_xref="GeneID:7256948" CDS 3917..4174 /locus_tag="Dhaf_0004" /inference="similar to AA sequence:KEGG:HM1_0902" /note="KEGG: hmo:HM1_0902 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456510.1" /db_xref="GI:219666075" /db_xref="GeneID:7256948" /translation="MFLHLGGDILINQEKIIAILDLETAMRNSTSENFLNKIKEKQKI NYISEKGKEKSLIIASDGNYFSPISSSTLLKRSSSAIIGEE" gene 4326..6260 /locus_tag="Dhaf_0005" /db_xref="GeneID:7256949" CDS 4326..6260 /locus_tag="Dhaf_0005" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01059" /note="KEGG: hmo:HM1_0901 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II" /codon_start=1 /transl_table=11 /product="DNA gyrase, B subunit" /protein_id="YP_002456511.1" /db_xref="GI:219666076" /db_xref="InterPro:IPR000565" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR011557" /db_xref="InterPro:IPR013506" /db_xref="GeneID:7256949" /translation="MQEKAEIKETIPTNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLR GLHHLVYEIVDNSIDEALAGYCDTIEVTIHKDNSISVVDNGRGIPVDIHPKLGKPAVE VALTVLHAGGKFSGSAYKVSGGLHGVGMSVVNALSTWLHVEVRKDGNIYHQEFMRGKT KTELAVIGQVDPNQTGTTITFSPDPEIFEDTVFLFDTLAHRLRELSFLNKKVSITLID AREDKKEVYYHTGGIYDFVKYINRSKESLHPEPIYFEAEKDGVQVEVSMQYNDGYVEN LFSYANNIHTHEGGTHESGFKAALTRVANDYARKNNILKANEANLSGEDIREGLTAVI SVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSAFFEENPAIGKKVIEKSIQASRA REAARKARELTRRKSALEVSALPGKLADCSWKEAELCEMYIVEGDSAGGSAKQGRDRR FQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGISEDFDIEKARYHKLVIMTD ADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGKDIHYVYSNEELAKLQ DEIGRDRVEIQRYKGLGEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTILMGDV VEPRREFIQDNAQYVRNLDV" gene 6274..8760 /locus_tag="Dhaf_0006" /db_xref="GeneID:7256950" CDS 6274..8760 /locus_tag="Dhaf_0006" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01063" /note="KEGG: hmo:HM1_0882 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller" /codon_start=1 /transl_table=11 /product="DNA gyrase, A subunit" /protein_id="YP_002456512.1" /db_xref="GI:219666077" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005743" /db_xref="InterPro:IPR006691" /db_xref="GeneID:7256950" /translation="MSTEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLK PVHRRIIYTLHELGMTPNKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRY PLIDGHGNFGSVDGDSAAAMRYTEARMAKITQYMLADIDKDTVDFQPNYDEREQEPKV MPAKFPNLLVNGSAGIAVGMATNIPPHNLTEVIEGTIAQIDNPEIEIKELMNYIKGPD FPTGASIMGTEGIISAYRTGKGSFRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLV EKIAELVREKRIEGITDLRDESDRTGMRIVMELRRDVNPQVLLNQLYKHTQMEESFGV NILALVDGQPKVLNLKQIIHYFIEHQKDVIVRRTRFELNKAEAEAHILEGLRIALDYI DEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQ ETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVV ITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGK VYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLSIRKYNEDFHLFMATRKGIV KKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQ MGRTAHGVKGISLEKEDLVVSMDVIYEEEAEILSMTELGFSKRTSLSEYRVQGRGGKG IIATKLNAKTGKLVGLKVMRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIG ESKVVAIAVVDNKEDAEESDLELVEIESEE" gene 8875..9447 /locus_tag="Dhaf_0007" /db_xref="GeneID:7256951" CDS 8875..9447 /locus_tag="Dhaf_0007" /inference="protein motif:PFAM:PF01174" /note="PFAM: SNO glutamine amidotransferase; KEGG: chy:CHY_2702 glutamine amidotransferase subunit PdxT" /codon_start=1 /transl_table=11 /product="SNO glutamine amidotransferase" /protein_id="YP_002456513.1" /db_xref="GI:219666078" /db_xref="InterPro:IPR002161" /db_xref="GeneID:7256951" /translation="MNERIGVLSLEGTDHDPCRFLRQLGCEVIRVQQREDLIDIQGLI MTGTGTGNKANNLGQPGLGDRIKELARADFPIFGLGAGIVLLSKESPGQGNDRLGLMD LTVTKEPMAGRTEAYLSIPALGLTPLKAIFNDAPYIQEIAPNVGILAEYNGKIVFVRQ GNMLAGAFHPEQTEDDRIYRYFLDIVNGQI" gene 9478..10743 /locus_tag="Dhaf_0008" /db_xref="GeneID:7256952" CDS 9478..10743 /locus_tag="Dhaf_0008" /EC_number="6.1.1.11" /inference="protein motif:TFAM:TIGR00414" /note="catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="seryl-tRNA synthetase" /protein_id="YP_002456514.1" /db_xref="GI:219666079" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR002317" /db_xref="InterPro:IPR006195" /db_xref="InterPro:IPR015866" /db_xref="GeneID:7256952" /translation="MLDLKFVRTNPEVVKEALKKRNSNVSLDAFLEQEEERRKLLFEV ESLKAQRNTVSEEVGRRKKHGEDAEQLILEMREVGQKVKNLEDKLGEIEQSMEAVLYE IPNIPHESVPVGADEEANVEVRTWGTPRSFDFEPLAHYEIGEKLDILDFARAGKVTGA RFTFYKGLGAKLERALISFMLDRHSAKGYVEVLPPYMVHRNSMIGTGQLPKFEEDAFK VAGTDYFLIPTAEVPVTNMYREEILEAEQLPIHHCAYSACFRAEAGSAGRDTRGLIRQ HQFNKVELVKFAFPENSYEELESLTRDAESILQELELPYRVMALSTGDLGFTSAKTYD LEVWLPSFNTYREISSCSNFEDFQARRANIRFRRAPKAKPEFLHTLNGSGLAIGRTVS AILENYQEADGRVRVPKALQPYMGVEYIG" gene 10845..10933 /locus_tag="Dhaf_R0001" /note="tRNA-Ser1" /db_xref="GeneID:7256953" tRNA 10845..10933 /locus_tag="Dhaf_R0001" /product="tRNA-Ser" /db_xref="GeneID:7256953" gene 11016..11094 /locus_tag="Dhaf_R0002" /note="tRNA-Arg1" /db_xref="GeneID:7256954" tRNA 11016..11094 /locus_tag="Dhaf_R0002" /product="tRNA-Arg" /db_xref="GeneID:7256954" gene 11110..11556 /locus_tag="Dhaf_0009" /db_xref="GeneID:7256955" CDS 11110..11556 /locus_tag="Dhaf_0009" /inference="protein motif:PFAM:PF00383" /note="PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sep:SE0327 Cu binding protein (Mn oxidation)" /codon_start=1 /transl_table=11 /product="CMP/dCMP deaminase zinc-binding" /protein_id="YP_002456515.1" /db_xref="GI:219666080" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR016192" /db_xref="GeneID:7256955" /translation="MNHQDYMRLALEEAEIAFAQGEVPIGAVVVHKGEIIARAHNEKE LRQDPTAHAEVLAVQRATQALGIWRLSEATLYVTLEPCPMCAGSLVQARLKTLVFGAA DLKGGAVGSVTNVLDVNRWNHRVEVVAGILEEECAQILKDFFRKLR" gene 11614..11702 /locus_tag="Dhaf_R0003" /note="tRNA-Ser2" /db_xref="GeneID:7256956" tRNA 11614..11702 /locus_tag="Dhaf_R0003" /product="tRNA-Ser" /db_xref="GeneID:7256956" gene 12020..12602 /locus_tag="Dhaf_0010" /pseudo /db_xref="GeneID:7256957" gene complement(12608..13465) /locus_tag="Dhaf_0011" /db_xref="GeneID:7256958" CDS complement(12608..13465) /locus_tag="Dhaf_0011" /inference="protein motif:PFAM:PF06445" /note="PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: ctc:CTC00639 transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002456516.1" /db_xref="GI:219666081" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7256958" /translation="MGWIEGISDAINYIEDNITEELNMENISKQAFVSSFYFQKGFAM LCGFTVGEYIRQRRLTLAGSELVSTDRKIIDIALKYGYDSPDSFTKAFLRFHGVTPTA VRKDGAMLKSFAPLKIKFSLEGGFIMDYRIIEKEAFTVMGAAKVFKYDTAGTEIPKFW TEHYQTGKDKIVCGMYGVCVDESMGSDEFEYLIADNYTTSSEIPDGFVTKVIPKHSWA VFACKGAMPTSLQNTNQKIFSEWLPNCKDYEIAAGYNIEMYTNVADYPKGNQDENYYS EIWIPVQKK" gene 13703..14269 /locus_tag="Dhaf_0012" /db_xref="GeneID:7256959" CDS 13703..14269 /locus_tag="Dhaf_0012" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: deb:DehaBAV1_1177 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456517.1" /db_xref="GI:219666082" /db_xref="GeneID:7256959" /translation="MEYKQREYPLFSACGLNCGLCPRYQMNGASQCPGCAGKDFLARH PKCGVLSCSQRKGFAYCYQCDEFPCSKYDGADQSDSFITHLHQFRDLEKAKRWGIDAY RQELNEKVGMLEQLLANYDDGRRKSLFCLAVNLLETDDIKHILEQLTSEIQSDAPLKE RAASAVCLLQAMAEQRKITLKLRKKSKL" gene complement(14401..14706) /locus_tag="Dhaf_0013" /db_xref="GeneID:7256960" CDS complement(14401..14706) /locus_tag="Dhaf_0013" /inference="protein motif:PFAM:PF01243" /note="PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: chy:CHY_1187 hypothetical protein" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-related FMN-binding" /protein_id="YP_002456518.1" /db_xref="GI:219666083" /db_xref="InterPro:IPR011576" /db_xref="GeneID:7256960" /translation="MMINDEVKAVIEGSPFITLVTVSADGTPHPIIAGKGEVSGDQVI FGIYKMEVTQKNLKENDKAWLVGATKDGGPKGYRLFGTAKAVDKQLIFTAQTVEAMI" gene 14830..15195 /locus_tag="Dhaf_0014" /db_xref="GeneID:7256961" CDS 14830..15195 /locus_tag="Dhaf_0014" /inference="protein motif:PFAM:PF01638" /note="PFAM: helix-turn-helix HxlR type; KEGG: cdf:CD0278 putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, HxlR family" /protein_id="YP_002456519.1" /db_xref="GI:219666084" /db_xref="InterPro:IPR002577" /db_xref="GeneID:7256961" /translation="MTERDVKCVVSCPTKCPCMEYCPLGSALKIIGGKWKLPILCALH QDGTTRYNTLKRKIAGITNTMLVSSLKELEEDGLIVRRQYVEMPVRVEYTLTDVCDDL MPILKQLAQWGVKVHTKES" gene 15361..15546 /locus_tag="Dhaf_0015" /db_xref="GeneID:7256962" CDS 15361..15546 /locus_tag="Dhaf_0015" /inference="similar to AA sequence:KEGG:Cthe_0642" /note="KEGG: cth:Cthe_0642 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456520.1" /db_xref="GI:219666085" /db_xref="GeneID:7256962" /translation="MSQLNQVELQNLRHLIGAHETAHQKLQAYAQQATDPEIKQFFQD GAQGAMKTKQQLLSFLN" gene 15560..15808 /locus_tag="Dhaf_0016" /db_xref="GeneID:7256963" CDS 15560..15808 /locus_tag="Dhaf_0016" /inference="protein motif:PFAM:PF07875" /note="PFAM: Coat F domain protein; KEGG: swo:Swol_1896 hypothetical protein" /codon_start=1 /transl_table=11 /product="Coat F domain protein" /protein_id="YP_002456521.1" /db_xref="GI:219666086" /db_xref="InterPro:IPR012851" /db_xref="GeneID:7256963" /translation="MIDEKVMVNDVLSSVKSSLTFYANTISECANPELRSTIQQIRNN DEASQYQLFQMAQAKGYYKPALMAKDDEIQQTKSQVSS" gene 16151..17281 /locus_tag="Dhaf_0017" /db_xref="GeneID:7256964" CDS 16151..17281 /locus_tag="Dhaf_0017" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: acl:ACL_0174 GGDEF domain membrane protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002456522.1" /db_xref="GI:219666087" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7256964" /translation="MMPLIVHYVELNFFAMTILCVIFLNMRRPDRQYSLDQKLFFLLI SANILLLLLDSMLWILDGKPGSLARTLSIASIVAYNTLNPVICMIWYYYVDFYIHSSK ERLTKVLFPILLPVLINLVLSVASVFTNIYFIFDENNVYHRGRFIFLLLGICLYMIIY TSAFLIRNRKKIAGKEYAYLLFFAIPPMVGGIIQFMFPGAVMIWIASTLSILIIFINI QKDQLNTDYLTGVYNRRYLDNYLQEKMKNRRHHLIAGIMIDIDSFKTINDSYGHDNGD QALKYTAQMLRKTFRKTDFIARYGGDEFVIVMEIDDRAELMAMVQRLKEKVSQFNLEK ITPYELRLSIGYDCYTKEPDMSTMAFLKRIDQLMYMDKQKNA" gene complement(17386..18852) /locus_tag="Dhaf_0018" /db_xref="GeneID:7256965" CDS complement(17386..18852) /locus_tag="Dhaf_0018" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2618 predicted ABC transporter, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456523.1" /db_xref="GI:219666088" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7256965" /translation="MELLLKATDIYVEYKGREILSINELELYNYDRIGLVGSNGAGKS TLLKVLLGELALPGCIVNGIGNFAYIPQLTEAAWQESIDHALLGKLGVSGLDTQTMSG GEETRLKVAQALSGQVHGIFADEPTSHLDREGIDFLIGQLQYFSGALLIISHDRYFLD KVVNKIWELKDGKITEYWGNYSDYLGQKEEERQRQTAQYEQHVMERARLERAAEEKRK QAQKVDQKTKGAAKRGATESGGRLGHQKTIGSKQKTLYKAAKSMEHRIESMGDISAPE KARTVRFRQSQALALHNPYPITGTEINKIFDNKVLFEKASFQIPLGAKVAFTGGNGTG KTTLFQMILHREAGIAISPKAEIGYFAQNSYKFNRDQGVMTFMEDHCDYGQSEIRSVL ASMGFSPNDIKKNLSVLSGGELIKLLLAKMLLGRYNILLMDEPSNFLDLPGIEALEIL MKSYAGTILFISHDQRLLENVADRIYAIKDKRLCLIKE" gene 19308..19514 /locus_tag="Dhaf_0019" /db_xref="GeneID:7256966" CDS 19308..19514 /locus_tag="Dhaf_0019" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cbl:CLK_1738 putative DNA-binding protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002456524.1" /db_xref="GI:219666089" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7256966" /translation="MHNKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWL AYDLAKLFKVSIEELFLFIEEDRK" gene 19511..19975 /locus_tag="Dhaf_0020" /db_xref="GeneID:7256967" CDS 19511..19975 /locus_tag="Dhaf_0020" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456525.1" /db_xref="GI:219666090" /db_xref="GeneID:7256967" /translation="MKQLLKNPATNAIGLSLFTAFYSLIFIVTAGHVEFVNLLYYSRS DGKSSFWTGWSYFLASGYHAYIAYVLIALSILVVLMLLTRRHPYDEYHTDVLIKCLAV ATILTLAAIAIFYLLVLSEPNGIVEKFTLFIVIHWVTVVLADLVYVLICRWR" sig_peptide 19511..19603 /locus_tag="Dhaf_0020" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.641) with cleavage site probability 0.610 at residue 31" gene 20015..21352 /locus_tag="Dhaf_0021" /db_xref="GeneID:7256968" CDS 20015..21352 /locus_tag="Dhaf_0021" /inference="protein motif:PFAM:PF04055" /note="PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbe:Cbei_3030 radical SAM domain protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002456526.1" /db_xref="GI:219666091" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7256968" /translation="MKIALIQPKMNKRPMDTDLKTRMSPPLSLLTLMGLTPEGHEVIM VNENVEKIDYACGAELVGITITLDVMPRAVEIAEEFHRLGIPVVAGGIHVTSSPDECR GYFDAICIGAAERVWERMIEDAEESRLQQVYHDMTDFRGEEIASPAYHRIDKNRYLYT NIMTTSRGCPNRCGFCYNSCRNRMYIRRPVTDVLRDIEGLGTRHILFIDDNFIGVPAY TRELLNHLRGRELKWSAAVTTKIADYPDVLDLMAETGCQSLFIGFESINNSSLHGVNK DNQFEKYERIVTAIHSRGIMINASMVFGLDGDEPDVFQRTLDWLVKNKIETLTSHILT PYPGTELHGRMKEEGRILDHELSRYNTAHVVFQPKGMTAEELYKGYLWIYREFYSFPN IWRRRPEHKAQRKSFFLFNILYRKFGGLTSVLARIIPMRTVGRLAARISYRVK" gene 21535..21849 /locus_tag="Dhaf_0022" /db_xref="GeneID:7256969" CDS 21535..21849 /locus_tag="Dhaf_0022" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456527.1" /db_xref="GI:219666092" /db_xref="GeneID:7256969" /translation="MKRLVLSVLLLIISFFLSIIALKFEMKIMGPEEGYNVPFPAYLM ACLLYLLVFCGIYSALNPLFQNYRDNEKYVLTGVFSVLLFVVFRFPLSYLGLIWLNPI LY" sig_peptide 21535..21606 /locus_tag="Dhaf_0022" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.705 at residue 24" gene 22069..22524 /locus_tag="Dhaf_0023" /db_xref="GeneID:7256970" CDS 22069..22524 /locus_tag="Dhaf_0023" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: mma:MM_1863 MarR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TrmB" /protein_id="YP_002456528.1" /db_xref="GI:219666093" /db_xref="InterPro:IPR000835" /db_xref="InterPro:IPR002831" /db_xref="GeneID:7256970" /translation="MNERIDKRKSLIKAISAIDRYSQTYIGRNVKDYNIGQGQWAFLT QLLFNYDGITQEELSELLNIDKANTARALKKLEEEGYVYREEDPKDGRKKIVYVTAKA RDFEQEFHEVFKGLNRILAKDFTEDERETARRILYKMLDNIADYERRHR" gene 22549..22956 /locus_tag="Dhaf_0024" /db_xref="GeneID:7256971" CDS 22549..22956 /locus_tag="Dhaf_0024" /inference="protein motif:PFAM:PF01980" /note="PFAM: protein of unknown function UPF0066; KEGG: cbb:CLD_2888 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0066" /protein_id="YP_002456529.1" /db_xref="GI:219666094" /db_xref="InterPro:IPR001378" /db_xref="GeneID:7256971" /translation="MEILMKPIGYIKSPYKEKGEAPRQSTLSGETTAVIEILEEYQEG IADIQEGEYGVILFYFHKSEGYKLMTLSRRNNQVMGVFSTRSPNRPNGIGLSTVRFVK REGNRLFFEGVDMLDNTPVLDIKPYIDPAAVAD" misc_binding 23006..23187 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 126.75" /bound_moiety="adenosylcobalamin" gene 23310..24863 /locus_tag="Dhaf_0025" /db_xref="GeneID:7256972" CDS 23310..24863 /locus_tag="Dhaf_0025" /inference="protein motif:PFAM:PF04205" /note="PFAM: periplasmic binding protein; FMN-binding domain protein; KEGG: mac:MA2153 periplasmic binding protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002456530.1" /db_xref="GI:219666095" /db_xref="InterPro:IPR002491" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7256972" /translation="MEKRYSQRIVALLVMVMIILLGGCNSSAANQPAENPPAEKAVAA GTYTAKAAGYHGDLEVTTEVDQEGKITKITIGENTETEDVGGIAMEKIPQRIIEAQSL DVDVIAGATLTSKGIINGVAAALKEAGADPVHYGYVAPEEESGAIMSPLNKSALPVKK ETTGSITIKDVKGREVTLDLPISSYAISTMDVIDYIIPLKGEEAFAMLVASGQDGGGG IQKYAQLYKPIVGDYTQHLGQISDHNAPFDLEMVLSMNPDVLIVNSAMAAHKYALEIE EQLTAAGISIVLIDVPGKTLDKSVQETMKLLGKIFQEGEKAAEVAAFIDKQYELLAAK NLAQRQNKPKVYYEKSGYSEVYGSTGTSVSGWGLPIAIAGGDNIADAVLLDKASAGGS SNTLDPEYVIKADPDYIILSGVNDGWLDSLKQKKEPPQYDIINRTGWSNLQAVKNNNV YEFAHSTSRSIYAFYPCLKMAKLFYPEEFKDLNPEAVLDEFFDQFMLVGSDISTWFTG LEDRISLKK" sig_peptide 23310..23396 /locus_tag="Dhaf_0025" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.786 at residue 29" gene 25046..26041 /locus_tag="Dhaf_0026" /db_xref="GeneID:7256973" CDS 25046..26041 /locus_tag="Dhaf_0026" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; ABC-3 protein; KEGG: pmr:PMI0229 ABC transporter, permease protein (FecCD transport family)" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002456531.1" /db_xref="GI:219666096" /db_xref="InterPro:IPR000522" /db_xref="InterPro:IPR001626" /db_xref="GeneID:7256973" /translation="MIIGLSVSMAALVILNISIGSSSIAIHDILRVLFTGEGDGHNSM IIKDIRLPMALMAVVVGASLGISGCELQTILRNPIASPYTLGISAAASFGAAMGLILN ANVLKSLKVPETLAVTVNAFIFALMVAVAIYIFSRQRQINKTAIILFGVALNFLFNSL TMVLQYIADENQLQSLIFWNFGSLLKTTWSKFFIVALVLVICFLVLFKNAWKLTAMTL DDTKARSIGVDTAKVRRMVIFVSSLLAAVSVCFVGTIGFVGLIAPHIARQLVGEDQRF FMPLSGLLGAFVMCLAFVISKLIIRGVILPIGLVTSIIGIPFFIAIIFSKKMRSM" gene 26041..26835 /locus_tag="Dhaf_0027" /db_xref="GeneID:7256974" CDS 26041..26835 /locus_tag="Dhaf_0027" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A0465 Fe(III) dicitrate ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456532.1" /db_xref="GI:219666097" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7256974" /translation="MLKVSNLNFSYKGYKKSKGSHKVFSGFSLEFAKGFNVILGPNGA GKSTLIKAIFGLLDYEGEIFYGQESLTAMCTEDKIKLMSYLPQMDVDLSTLTVLEMVI LGRLPELSHKVSDEDLDIVMDTLRSLNIEHLAPRNFSELSGGQKKLVFIAQTLVRNPK VLLLDEPVNSLDLQKQLELCQLLQRVVAEQNVDLIVVLHDINLAARYAQHIVVVDGKG SLYSAGEPREVITAAMLQEVYGVIANITYDEQGVPIIAPVCSVRGI" gene complement(26891..27706) /locus_tag="Dhaf_0028" /db_xref="GeneID:7256975" CDS complement(26891..27706) /locus_tag="Dhaf_0028" /inference="similar to AA sequence:KEGG:CLI_1114" /note="KEGG: cbf:CLI_1114 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456533.1" /db_xref="GI:219666098" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7256975" /translation="MEFKRVTLDNLASEHICCALTDQKGESSVASKKAWLSQRLGEGL VFDKLDVRGKVFIEYIPAEKAWCPITADHYLFINCFWVSGQYKGQGYANLLLERCLAD AKAKGMQGLVVLSAEKKMPFLSDPKYLKYKGFQIADQAPPYYELLYLPFSPQANVPQF KACVKSGRTDEEGWVVYYTNQCPHTDKYVPILVDHLKSKKLAIKAIKIQTTEQAQKAP NPFTTYALFYNGQFITNEILTAKSFDKLLIKTNLSPPTVPPSPSEWPAPLQRG" gene complement(27879..28382) /locus_tag="Dhaf_0029" /db_xref="GeneID:7256976" CDS complement(27879..28382) /locus_tag="Dhaf_0029" /inference="protein motif:PFAM:PF01325" /note="PFAM: iron dependent repressor; KEGG: cth:Cthe_1402 DtxR family iron dependent repressor" /codon_start=1 /transl_table=11 /product="iron dependent repressor" /protein_id="YP_002456534.1" /db_xref="GI:219666099" /db_xref="InterPro:IPR001367" /db_xref="GeneID:7256976" /translation="MDNKSGSEYRTVRGYQIANYQENKLTPAMEDYMEMACRLCLENG YTRINKLAELLNVRPSSASKMIAKLSELGYLQYDLYESILLTEKGKETGTYLLSRHDT VEQFLRLIGNMNPLEETELIEHSLNVSTVLQLHTLLDFFAQNVAVRESFETFKKAAKE NPASPSL" gene 28525..29466 /locus_tag="Dhaf_0030" /db_xref="GeneID:7256977" CDS 28525..29466 /locus_tag="Dhaf_0030" /inference="protein motif:PFAM:PF01297" /note="PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_3070 periplasmic solute binding protein" /codon_start=1 /transl_table=11 /product="periplasmic solute binding protein" /protein_id="YP_002456535.1" /db_xref="GI:219666100" /db_xref="InterPro:IPR006127" /db_xref="InterPro:IPR006128" /db_xref="InterPro:IPR006129" /db_xref="GeneID:7256977" /translation="MSRKLKRMLGIVLSLILLTAGCSQTAGKKESGEGLLNVVATTTM LADLAGVIGGEHVSVNGLMGPGIDPHLYQASAGDVGRMQKADVVVYNGLHLEGKMSEL FENLSAQGIFTVCIEKSMDRTGLLISEDDGGVYDPHIWFDVTLWKQAAQGVAEGFAQA DPEHGNSYIANLERYLAELDELDAYIQKRAAELPKDQRVLITAHDAFQYFGNAYGFEV RGLQGISTDSEAGTSDVSALASFIVERRIKAIFVESSVPPKTIQALQAAVKAQGFDVA IGGELYSDSLGGEGSGDETYIKTFRSNIDTIVDALKA" sig_peptide 28525..28602 /locus_tag="Dhaf_0030" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.778 at residue 26" gene 29478..30233 /locus_tag="Dhaf_0031" /db_xref="GeneID:7256978" CDS 29478..30233 /locus_tag="Dhaf_0031" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_1723 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456536.1" /db_xref="GI:219666101" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7256978" /translation="MDMKGMEHAVEVETLTVAYDAKPVLWDVNLKVPKGTLMAVVGPN GAGKTTLIKAMLGLLTPVTGAICFSGGKGDGHALKNRIGYVPQSGSVDWDFPATVQDV VLMGCYGKLGWFRRPRKADYELTAQMLKKVGMEQYASRQISQLSGGQQQRVFLARALA QEAEIYFMDEPFKGVDAQTEKAIVLLLKELKEQGKTVMVVHHDLQTVADYFDWVTLIN LRVIASGPVEEVFHEENLKMAYRSTGALLRSVV" gene 30235..31158 /locus_tag="Dhaf_0032" /db_xref="GeneID:7256979" CDS 30235..31158 /locus_tag="Dhaf_0032" /inference="protein motif:PFAM:PF00950" /note="PFAM: transport system permease protein; ABC-3 protein; KEGG: rrs:RoseRS_3068 ABC-3 protein" /codon_start=1 /transl_table=11 /product="ABC-3 protein" /protein_id="YP_002456537.1" /db_xref="GI:219666102" /db_xref="InterPro:IPR000522" /db_xref="InterPro:IPR001626" /db_xref="GeneID:7256979" /translation="MNTWLALLNDYTFQTVSLGSALLGMISGVLGSFAVLRKQSLLGD GVSHSALPGVVIAFILLGSKNTEILLLGALLSGLTATALIVGIVRHTRIKFDSALALV MSFFFGLGMVLLTYVQKIPNSNQAGLKRFIFGQASTLLQRDIILMSVCGVVLLTLVLV FWKEFKLFVFDSDFAHNLGFSPKKLNLLLSFMIVLTIIIGLQTVGVILMSALLISPAV AARQWTNKLGVMVSLAAAFGALSGVVGTAASSAVPKLPTGPAIVVCASLLVVLSVLFA PGRGILHRVYRHRKNKLMLKLEGSGPDVPTI" sig_peptide 30235..30339 /locus_tag="Dhaf_0032" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.615) with cleavage site probability 0.536 at residue 35" gene 31142..32245 /locus_tag="Dhaf_0033" /db_xref="GeneID:7256980" CDS 31142..32245 /locus_tag="Dhaf_0033" /inference="protein motif:PFAM:PF00950" /note="PFAM: ABC-3 protein; KEGG: cau:Caur_0194 ABC-3 protein" /codon_start=1 /transl_table=11 /product="ABC-3 protein" /protein_id="YP_002456538.1" /db_xref="GI:219666103" /db_xref="InterPro:IPR001626" /db_xref="GeneID:7256980" /translation="MSPQFEIQLIAVIVAVACALPGVFLVLRKMAMMSDSITHTILLG IVLAFFVTHDLSSSFLIAGAALMGVVTVWLTEMLGRTRLLAEDAAIGIVFPFLFSIAI ILITRYAGSVHLDTDSVLLGELAFAPFDRMIVGGVDLGAKAIHTTGILLLINLAVIII FFKELKLATFDPMLASVLGFAPTLVHYGLMTLVSLTTVGAFQAVGSILVVAFMIGPPV TAYLLTDDLKRMLILSGVIGAINGLLGYRAAALLDVSIAGCMAMMTGISFLLVFIFAP GRGLVSTLSRRRSQKIGFAKMILLLHLYHHEESEANLAEIQSYLRLDGELTKNLIALL QKEGCIELNNSVIKLTEQGRLTSLRSYETLLSG" gene 32272..32412 /locus_tag="Dhaf_0034" /db_xref="GeneID:7256981" CDS 32272..32412 /locus_tag="Dhaf_0034" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456539.1" /db_xref="GI:219666104" /db_xref="GeneID:7256981" /translation="MKEVSIFFVSDSVILKKVILKNSKDSLKYIVIGQEISYSIYNFI WG" misc_binding 32394..32584 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 96.12" /bound_moiety="adenosylcobalamin" gene 32886..34526 /locus_tag="Dhaf_0035" /db_xref="GeneID:7256982" CDS 32886..34526 /locus_tag="Dhaf_0035" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: ctc:CTC01900 periplasmic dipeptide transport protein precursor" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002456540.1" /db_xref="GI:219666105" /db_xref="InterPro:IPR000914" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7256982" /translation="MNKPKLHLLRKRFAPLLILVVVLLVGLPGCSPSPTTSKAPEEGK KEELVLAVGMADYGMFDPKKTWGAIGQIRLTHSSLLKATKDLTFVGDLAKSFETSKDG YTWTFKIRNDAKFSNGDPVTIEDVLFTYEMLKEDGIAFDLSFVDKMEISGKDTIVFTL QEPRSTFVSQLSEIGIVPKHIYDDNYSKNPIGSGPYQVTQYNDGEQIIMDYNPYWYGE EPQFKKLTFLLLGEDAAFAAAKAGQVDICYIPPKFAGQTLPGMTLHVLESVDSRGISL PVLPSGGTGYINANEVKVGNDITSHLAIRQALNIGLSRQGIIDVTMDGYGKAAYSIVD GTPWFNEKTVIEDGRVEEAKQLLADAGWADTNKDGIVEKDGLKAEFDLYFPSSDQLRG DIALAVADQALGLGIKINIIGATWDEIFIQGKANACLWGGGRLHPHQLYTMYSSQVIN TGYNNMPSYINPTSDDYIKKALYASTQEEANQYWKLAQWDGKTGFSPLGDAPIVWLAR VDHLYLVNDQVNIGNQLMHSHGYEFGLFGNITEWSINP" sig_peptide 32886..32999 /locus_tag="Dhaf_0035" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.765 at residue 38" gene 34646..35623 /locus_tag="Dhaf_0036" /db_xref="GeneID:7256983" CDS 34646..35623 /locus_tag="Dhaf_0036" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctc:CTC01901 dipeptide transport system permease protein DppB" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456541.1" /db_xref="GI:219666106" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7256983" /translation="MSQKILRRFLRMITLMLGLSILTFWLIHLSPIDPVNAYAISDTS MSQEQLEKLKEYWGVNKSPVEQYFSWAGALLQGDFGMSKLYRVPVMDIIKSRAMTSFA LMGTAWLLSGVFGYLLGAVAAMRRGKLLDRFIKWYSYILVSIPTFLLALILLLVFAVW LGMFPIGLTKPIGLADADVTLADRLRHFILPALTLSLLGVANIAMHTREKMIDILNTE YVTFARARGETAWQIFKNHGFRNSIIPAISIQFAYFSELFGGSVLAEQVFAYPGLGST LTTAGLKGDLPLLLGIILIASLFVFIGNFIADILNTIVDPRIKRGELRC" sig_peptide 34646..34735 /locus_tag="Dhaf_0036" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.832) with cleavage site probability 0.404 at residue 30" gene 35617..36486 /locus_tag="Dhaf_0037" /db_xref="GeneID:7256984" CDS 35617..36486 /locus_tag="Dhaf_0037" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctc:CTC01902 dipeptide transport system permease protein DppC" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456542.1" /db_xref="GI:219666107" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7256984" /translation="MLEQLGRKEEVLLDPGKTGNVRKKIIWMIGFSTCLIGLILILSF ILSNDNLRVNNASKNLMPSLQHLFGTDWLGRDMFTRTMKGLRLSLAVGIFATVISVTV ATLLGTAAALFGKKVDELISWLIDLFIGMPHLIFMILICYIVGGGIRGIVIGVAMTHW TSLARVVRAEVLQIKSAEYIQLSRSYGKSPWYIARRHVMPSVFPQIMIGAFLMFPHVI LHEAALTFLGFGLSPQTPAVGIILSEAMSHLSTGQWWLILFPGILLILVAKSFDNIGE QLRILLDPTSSNE" gene 36499..37311 /locus_tag="Dhaf_0038" /db_xref="GeneID:7256985" CDS 36499..37311 /locus_tag="Dhaf_0038" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01903 dipeptide transport ATP-binding protein DppD" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456543.1" /db_xref="GI:219666108" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7256985" /translation="MLKAAQPLLKVENLSIGFSQYFRGTQKRVIQPIANLHVEIEEGE IVAVVGASGSGKSLLAHAILGILPTNAICSGSMMYRGQELTKKRKEELRGREISFIPQ SVNYLDPLMPVGKQVQIGLAKQRAQERQNRLFAHYGLKESDGRLYPHELSGGMLRRVL FATSVREGVKLVIADEPTPGIHPQALAEILKQLQQFAREGAGVMLITHDIMSALAIAD RVAVIKDGQTIEISPVSAFSGTGEQLQTDYARKLWRALPQNDFACQELRWEA" gene 37311..37919 /locus_tag="Dhaf_0039" /db_xref="GeneID:7256986" CDS 37311..37919 /locus_tag="Dhaf_0039" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01904 dipeptide transport ATP-binding protein DppF" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456544.1" /db_xref="GI:219666109" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7256986" /translation="MALLGENLGVYYKKDQWIFKNMNIKVLPGQVLGLSGYSGCGKTT LARVLAGYILPQTGRVSVDSKPLAPKSFRPVQLIYQHPEKAINPRWKMEDVLTETYTP SQDILDAFGIREDWRKRWPIELSGGELQRFCIVRALNPQTRYIIADEMTTMLDAITQA RIWHSFLHICQSRKIGVIVVSHELSLLNRLCDKVIQVGNTWE" gene complement(37970..39280) /locus_tag="Dhaf_0040" /db_xref="GeneID:7256987" CDS complement(37970..39280) /locus_tag="Dhaf_0040" /inference="protein motif:PFAM:PF00512" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ctc:CTC01905 sensory transduction protein kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002456545.1" /db_xref="GI:219666110" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7256987" /translation="MNRAKREYKLSQTLMITAVLACLASALLFLGLQYLSRGIIYDYC KKPEVISAHIEKKITSLRQYIKDNQISLSDLSELDNWMRGKELTEIVIYHDNTLIYSS HTLSPSFSFPSQPKFPDFYLWHNKYILTFQEGTAEVFIKDFFEHRYIDYITYFNLLVF FLCFITIMVFFIHKKVSYINTLEKEIRILEGGDLHYSITIKGNDELASLAQEIDEMRK AFIAREDYAERVRAATNTLMAGVSHDLRTPLTALIGYLEVLEGEDIPAKESSFLGKCK NRALQIKDLINHLFDYFFISTNDYKEIDLKHYPAQEVLREMIHEHIYLMEQSGFMVSS TVELPEGTIKVDSGMIQRIFDNMLSNVQRHADPAHPVRLYSTIDSGELVLVFENHSQH SLDPTPKTGLGLNNCQKIMLLHQGRFMYRQNDHVFTVQLAFPLI" sig_peptide complement(37970..38062) /locus_tag="Dhaf_0040" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.451 at residue 31" gene complement(39273..39968) /locus_tag="Dhaf_0041" /db_xref="GeneID:7256988" CDS complement(39273..39968) /locus_tag="Dhaf_0041" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01906 transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002456546.1" /db_xref="GI:219666111" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7256988" /translation="MPENSTILVVDDDPEIREIIHILLQREGFAVQVAADADTALATL TPGVDLAILDIMMPGKSGFELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLV KPFSSIELISRVKALLRRYLIYQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTS MEYQVFRLLLLNRRKVFSAKEIYEHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQ YIRTVWGKGYYIE" gene 40149..41147 /locus_tag="Dhaf_0042" /db_xref="GeneID:7256989" CDS 40149..41147 /locus_tag="Dhaf_0042" /inference="protein motif:PFAM:PF01297" /note="PFAM: periplasmic solute binding protein; KEGG: cth:Cthe_0547 periplasmic solute binding protein" /codon_start=1 /transl_table=11 /product="periplasmic solute binding protein" /protein_id="YP_002456547.1" /db_xref="GI:219666112" /db_xref="InterPro:IPR006127" /db_xref="InterPro:IPR006128" /db_xref="InterPro:IPR006129" /db_xref="GeneID:7256989" /translation="MKKLWSKILVGGLVLFLMAGCSQTQNSSSPNTNDKQSQSEKLSV YTSFYPMYDFAAKIGGDKITPVNMVPAGMEPHDWEPSAADITGLEKADVFVYNGAGME HWVEDVLESLQNKALIAVEASKDITLREGHHEHDHEDEHEDEGKEHEEEEEHGHEGAE YDPHTWLSPLNAKKQMETIKDAFVQADPDNKDYYETNYVKYAADLDGLDKEFKDTLAP LPKKDIIVSHEAFGYLCGAYGLNQIGIEGLAPDSEPDPARMAEVIEFAKEHEVKVIFF EELVSPKVAETIAKATGAKTAVLSPIEGLSDEQQAAGDDYLAVMRQNLEALKAALQ" sig_peptide 40149..40223 /locus_tag="Dhaf_0042" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.712 at residue 25" gene 41158..41901 /locus_tag="Dhaf_0043" /db_xref="GeneID:7256990" CDS 41158..41901 /locus_tag="Dhaf_0043" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0548 ABC transporter related protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456548.1" /db_xref="GI:219666113" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7256990" /translation="MSNIIEVDDLGFSYGNEPVFSKIGFSVYKGDFAAIIGANGAGKS TLLRLILGELVPNAGSVRLFGQDSRRFRNWPKIGYVPQAGQHSNANFPATAEEIVRAN LFSQIGLLRFPGKEHRDKVQRALELVGMEGYAKRMIGELSGGQQQRIMLARVLAGDPE IMILDEPTTGVDAQTVQSLYELLARLNQENGLTIVMVTHDISRAAKYVSRILCLEEGS LVEHKHKHPGQELAKEGKGNDECDCHSGI" gene 41873..42706 /locus_tag="Dhaf_0044" /db_xref="GeneID:7256991" CDS 41873..42706 /locus_tag="Dhaf_0044" /inference="protein motif:PFAM:PF00950" /note="PFAM: ABC-3 protein; inner-membrane translocator; KEGG: cth:Cthe_0549 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC-3 protein" /protein_id="YP_002456549.1" /db_xref="GI:219666114" /db_xref="InterPro:IPR001626" /db_xref="InterPro:IPR001851" /db_xref="GeneID:7256991" /translation="MSVIAILEYDFMRRAFIVGILLAVIIPCIGIIVVLKRLSMIGDA LSHTSLAGVAAGLIMGINPILGAVTACIAAALGIEFIRKKIPKFSEMSIAIVMSAGIG LAGVLSGHVKNAANFNSFLFGSIVSISDFEMILVAGISCIVMLAFILLYKELFYIALD ERAARLSGVPVGVINFIFTILTAVTVSVAARTVGALIVSSMMVVPVACAMQVGKSYRQ TVIYGVIFAVVFTVTGLFLSYYLKLKPGGTIVLLGVLCLVVMLLIKQIISMLRRTVFK M" gene 42774..43187 /locus_tag="Dhaf_0045" /db_xref="GeneID:7256992" CDS 42774..43187 /locus_tag="Dhaf_0045" /inference="protein motif:PFAM:PF01475" /note="PFAM: ferric-uptake regulator; KEGG: cth:Cthe_0546 ferric uptake regulator family protein" /codon_start=1 /transl_table=11 /product="ferric uptake regulator, Fur family" /protein_id="YP_002456550.1" /db_xref="GI:219666115" /db_xref="InterPro:IPR002481" /db_xref="GeneID:7256992" /translation="MKEVNNNWPAGVKRTKPRESVLSVLEHAPKPLSAVEICSEIEKE GESPWLSTIYRILELFVKKGVVVKLAVLNNEMALYELNRFQHKHYAICLGCHKIVTMN NCPMEKFIPKIEDDDFRVLGHNLEVYGYCRECSVK" gene 43274..44311 /locus_tag="Dhaf_0046" /db_xref="GeneID:7256993" CDS 43274..44311 /locus_tag="Dhaf_0046" /inference="protein motif:PFAM:PF02492" /note="PFAM: cobalamin synthesis protein P47K; KEGG: cpy:Cphy_2883 cobalamin synthesis protein P47K" /codon_start=1 /transl_table=11 /product="cobalamin synthesis protein P47K" /protein_id="YP_002456551.1" /db_xref="GI:219666116" /db_xref="InterPro:IPR003495" /db_xref="GeneID:7256993" /translation="MGTEIYIISGFLGVGKTTLIQKMLKEAFQGEKVVLIENDFGEIS VDAALLKSGGVEVKEISAGCICCSLSGDFVKALKDLLLRFHPDKIIIEPSGVGKLSDV MKACSDPRIVLHAKVKGKITVVDVKRCQMHLDNFGEFFEDQIRNADVVVFSRSESFPA KLGDGEKIVKKLNPQGRVLTKPWAQINTAELLNPQRQQHRLPGRCRHGHDEHNHDHRD HHSHDHNHHDHDHDHAHHSHDHAADCSHQEGCEHNSRAEDVFDTVTIRTKRVFDTEEL KAKVVKMENSAKGTILRAKGIVRGPKGYLNLQYLPGDIRITGCHARGDMLCIIGRNLN RQELCAIFSGE" gene 44316..45890 /locus_tag="Dhaf_0047" /db_xref="GeneID:7256994" CDS 44316..45890 /locus_tag="Dhaf_0047" /inference="protein motif:PFAM:PF03773" /note="PFAM: permease; KEGG: ckl:CKL_2452 hypothetical protein" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_002456552.1" /db_xref="GI:219666117" /db_xref="InterPro:IPR005524" /db_xref="GeneID:7256994" /translation="MAIPVYVVTGFLDAGKTTFLNNLLNKYSWRDVRAFVIQFESGEE EFQGRHLNCYKLSVPKKILEQRPEQIVERICSSIEEQPFDEIWIEWNGVVPFSELQSL LLHPSLRGLCQIQKVVHIADGENIENLLGRTGASLPEQIANSDFVVMRNVDSAVTYRR IRRLVNGLNPGVPLYKVKEYQELYKQLFGKKEHPVNLFLLMVIAMSALYFMAKPVLEG AQIPVNTIVNVFLGIILQAVPFLLIGVLLSSAIQVFIPQSFIERRFPKSIGMGMLVAI LGGFCLPVCDCASIPVFRSLVRRGIPLPVAVTFMTATPVINPVVIVSTYYAFSGNTGI VVGRIFFGIVAAVLIGLTMGFWPPKGSVLAGGAFDRLLCSCGCYDDVESITTFKGKAG LFIRHSQAEFFGVGKYLVMGSFIAALFQVMGTGLFTKAQDGAGLAVSILIMMVMAFVL SLCSSSDAIIARSLANQFPMGAIMGFLVFGPMMDIKNVLMLSSGFSKAFIVRLLLTSL SICFVLVFLFFNWGGM" gene 45892..46755 /locus_tag="Dhaf_0048" /db_xref="GeneID:7256995" CDS 45892..46755 /locus_tag="Dhaf_0048" /inference="protein motif:PFAM:PF09323" /note="PFAM: Protein of unknown function DUF1980; KEGG: cbe:Cbei_3262 protein of unknown function DUF1980" /codon_start=1 /transl_table=11 /product="Protein of unknown function DUF1980" /protein_id="YP_002456553.1" /db_xref="GI:219666118" /db_xref="InterPro:IPR015402" /db_xref="GeneID:7256995" /translation="MPAKAFNPQIFLEFLCYCVFGGLIFYLVSSEKYLTYVTPRLKPY LYFTSIVMGVWALTALGRLFRPQHKLRSAHCFVLVIPIVLLLLPHAPVSASNLSGNYI GGSAFSNRSGQSALSMQNDLSITIEDASSPEDKVQAEIIQEPLAGLPAGAYVSELPGL DMGNKRITVAHEDFSMWLTEMYTNIEKYQGYTVVMTGFVFNDPEFLKEDEFVPARLMM SCCVGDLAPAGILCKYDQADQLQAESWVTVEGTLTLGQHEYDGVLSDEPQIRVTKITP AEAVEGYIYPY" gene 46803..47033 /locus_tag="Dhaf_0049" /db_xref="GeneID:7256996" CDS 46803..47033 /locus_tag="Dhaf_0049" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456554.1" /db_xref="GI:219666119" /db_xref="GeneID:7256996" /translation="MLFACESIKIFLKGISGGINVEKRLLKKIEVLRKKLYRYATTRS LVDARVVELSQELDYLLNQYQRLNKYTQLSFW" gene 47124..47213 /locus_tag="Dhaf_R0004" /note="tRNA-Ser3" /db_xref="GeneID:7256997" tRNA 47124..47213 /locus_tag="Dhaf_R0004" /product="tRNA-Ser" /db_xref="GeneID:7256997" gene 47403..47493 /gene="ffs" /locus_tag="Dhaf_R0005" /db_xref="GeneID:7256998" ncRNA 47403..47493 /gene="ffs" /locus_tag="Dhaf_R0005" /ncRNA_class="SRP_RNA" /product="SRP RNA; RNA component of signal recognitionparti cle" /db_xref="GeneID:7256998" gene 47673..49337 /locus_tag="Dhaf_0050" /db_xref="GeneID:7256999" CDS 47673..49337 /locus_tag="Dhaf_0050" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR02397" /note="KEGG: bat:BAS0021 DNA polymerase III subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; DNA polymerase III delta; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="DNA polymerase III, subunits gamma and tau" /protein_id="YP_002456555.1" /db_xref="GI:219666120" /db_xref="InterPro:IPR001270" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR010372" /db_xref="InterPro:IPR012763" /db_xref="GeneID:7256999" /translation="MAYLALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFS GPRGTGKTTTAKVLAKALNCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGID EIRDLRDKVRLSAGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVH KIPLTILSRVQRFEFHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDAL SILDQCLLLDGKLGVEQVYQVLGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMD PRQIIRELLDYMRQALLYASTQAFPQVAPHLREHLAYQCQKLGLKTLLQWIGILLQGE SQLKYAANARLAAELLLVQVIYDSQPGYSKESPQVLERLQELEEEIKNLSTGKSRQES KGELPKKVNERSSEPPGHKKPELPPLQDKPAISQGGETAALSIEQVQGRWGDILEQVR KRKKSTHAFLMEGKPVELDGDSLVIVFKEGLSFHRDKVNQKENRETIEEVLQSSLGKA YRLQSLLENEYGKDPKDSEHVEKTKENPMIKKAADLFGADLLIVEE" gene 49360..49692 /locus_tag="Dhaf_0051" /db_xref="GeneID:7257000" CDS 49360..49692 /locus_tag="Dhaf_0051" /inference="protein motif:PFAM:PF02575" /note="PFAM: conserved hypothetical protein; KEGG: cdf:CD0017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456556.1" /db_xref="GI:219666121" /db_xref="InterPro:IPR004401" /db_xref="GeneID:7257000" /translation="MAFKGGGMGNMGNMLKQAQKLQEEMAKAQEELKTRTVEASVGGG AVQVVVNGKNELVELKIKPEAVDPDDVEMLEDLVKAAVNEGLRKVEELVSSEMGKLTN GLKIPGLF" gene 49703..50299 /gene="recR" /locus_tag="Dhaf_0052" /db_xref="GeneID:7257001" CDS 49703..50299 /gene="recR" /locus_tag="Dhaf_0052" /inference="protein motif:TFAM:TIGR00615" /note="involved in a recombinational process of DNA repair, independent of the recBC complex" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="YP_002456557.1" /db_xref="GI:219666122" /db_xref="InterPro:IPR000093" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR015967" /db_xref="GeneID:7257001" /translation="MDFLNYPEPLADLITGLSRLPGIGPKTAGRLAFYLLQQPQVAEN LAEAMIRAQREIRQCSLCCNYTDHDPCPICTGEKRERTLLCIVEQPRDVVSLEKTREF KGLYHVLHGVISPLEGVGPEQLTISKLLGRLEGVQEVVMAMNPTVEGEATALYLSRLL KPLGIKVTRIAHGLPVGGDLEYADEITIARALEGRRQI" gene 50389..50643 /locus_tag="Dhaf_0053" /db_xref="GeneID:7257002" CDS 50389..50643 /locus_tag="Dhaf_0053" /inference="protein motif:PFAM:PF07441" /note="PFAM: sigmaK-factor processing regulatory BofA; KEGG: swo:Swol_0034 SigmaK-factor processing regulatory BofA" /codon_start=1 /transl_table=11 /product="sigmaK-factor processing regulatory BofA" /protein_id="YP_002456558.1" /db_xref="GI:219666123" /db_xref="InterPro:IPR010001" /db_xref="GeneID:7257002" /translation="MTLIFLALFVLLIGLVVKSSLGQPNTFLKAGIHILGGIVGLWFF DLILSVVGFGIPINVFTITLVGLLGFPGVVALVGLQVLGI" sig_peptide 50389..50457 /locus_tag="Dhaf_0053" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.962 at residue 23" gene 51021..54551 /locus_tag="Dhaf_0054" /db_xref="GeneID:7257003" CDS 51021..54551 /locus_tag="Dhaf_0054" /inference="protein motif:PFAM:PF01855" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein" /codon_start=1 /transl_table=11 /product="pyruvate flavodoxin/ferredoxin oxidoreductase domain protein" /protein_id="YP_002456559.1" /db_xref="GI:219666124" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR002869" /db_xref="InterPro:IPR002880" /db_xref="InterPro:IPR011895" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257003" /translation="MAKMKTMDGNEAAALASYAFTEVATIFPITPSSTMAELVDEWAA HNKKNIFGQPVKVVEMQSEAGAAGAVHGSLQAGALTTTYTASQGLLLMIPNMYKIAGE LLPSVFHVSARALATHALSIFGDHQDVMSVRATGFAQLSSHNVQEALDLGFIAHLATI KAKVPFVHFFDGFRTSHEIQKIEVTDYDDVAKLLDRDALQAFRDNALNPERPVLRGTA QNPDVYFQGREVSNRYYDAVPDIVAHYMDEYAKITGREYQPFQYYGAEDAERVIIAMG SVCDTIEETVDYLVAKGEKVGVVKVHLFRPFSTKYLFKVLPKTVKAIAVLDRTKEPGS TGEPLYLDVKDSFFNHEIKPVIVGGRYGLGSKDTTPSQVLAVYKNLAQAEPKNDFTIG IVDDVTFKSLPEDEVVSTAPEGTIACKFWGLGSDGTVGANKQAIKIIGDHTTMYAQAY FQYDSKKSGGITISHVRFGKKPIKSPYYVSDANYVACHNQAYVGQYDLTKGLKKGGTF VLNCQWQPEELADKLPASMKQFIAKNDIKLYIIDAVSIAREIGLGSRINMVMQSAFFK LANVIPVEEALGYLKESVVKTYGKKGQNIVDMNNAAIDRGADSLVKVEVPASWADAAP AQAEAAAAADLPEYVAKIQNVMNAQEGDSLPVSAFVGREDGTVPVGTTAYEKRGIAVI VPEWDVEKCIQCNQCSYVCPHAAIRPFLLNEEEVANAPEGFVTKKALGKEADGLQLRV QVSPLDCTGCGNCAEVCPAKGKALVMKDAAEQTAAQAGNWEYALTVTNKAERFDITTV KGSQFAQPLLEFNGACPGCGETAYVKLLTQLYGDRMMIANATGCSSIWGGSAPSVPYT VNAKGQGPTWANSLFEDNAEFGYGMYLGVRQQREKLALLMEEACATEISADMKEAFQE WIAGMDDADASKAAAAKVRAALDVYEGDSALIADIKGRKDHLVKKSQWIVGGDGWAYD IGYGGLDHVLASGDDVNILVMDTEVYSNTGGQSSKATPRAAVAKFAAAGKKIRKKDLG MMAMSYGYIYVAQVALGANMAQTIKAMKEAEAYKGPSIIIAYAPCINHGLKSGMSKSV TEAKKAVEAGYWHLYRFNPDLEDQGKNPFTLDSKEPTASFRDFLMGEVRYTSLINTFP ESAEELFEGAEKYAKVRLDSYKRLASYKYE" gene 54726..56078 /locus_tag="Dhaf_0055" /db_xref="GeneID:7257004" CDS 54726..56078 /locus_tag="Dhaf_0055" /inference="similar to AA sequence:KEGG:FN1101" /note="KEGG: fnu:FN1101 ATPase" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="YP_002456560.1" /db_xref="GI:219666125" /db_xref="GeneID:7257004" /translation="MERIIMQDLLRWKNSKHRKPLILKGVRQVGKTWLLKEFARRYYN NLAYFNFDEHPEYKQFFENTKDVERILQNLMMASGQIINPKEPGTTLIVFDEIQECPN ALNTLKYFCENTPHYHVACAGSLLGIALSKPASFPVGKVDFLEIGPMTFTEFLLANGD GNFVSYLDNLDRIEPIPDAFFNPLYEKLKMYFVTGGMPESVRSWTEERDVELVQQVLA NILGAYERDFAKHPDPKDFPKISLIWKSLPSQLARENKKFIYKVVKEGARAREYEEAL QWLCDASLAYKIYRSSAPGLPISAYDDLAAFKLYLVDVGLLRRLSLLAPSAFGEGNRL FVEFKGALSENYVLQALRNQLEAMPRYWTMDNPRHEVDFLIQRENEIIPVEVKSETNV ESRSLKKFKEKYGDKVKLRVRFSLNNLRLDGDLLNIPLFITDYADKLIGMALTDQPKE" gene 56150..56626 /locus_tag="Dhaf_0056" /db_xref="GeneID:7257005" CDS 56150..56626 /locus_tag="Dhaf_0056" /inference="similar to AA sequence:KEGG:Moth_2093" /note="KEGG: mta:Moth_2093 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456561.1" /db_xref="GI:219666126" /db_xref="GeneID:7257005" /translation="MDQEDLIRRLNWFYSLEMNQVELYKVQSKQFKDHYAGQVFERVA AIEQSHVDNVAARITSLGAKPTLLGEVVSPILGMSLGNLMSLTGLERTLQLNMELERK AMSDYKKLIEDLVAGGEDPGGDLCSQLKDNFVDEHLHTALFDTLRENLMEDKIETL" gene 56825..58396 /locus_tag="Dhaf_0057" /db_xref="GeneID:7257006" CDS 56825..58396 /locus_tag="Dhaf_0057" /inference="protein motif:PFAM:PF03323" /note="PFAM: GerA spore germination protein; KEGG: tpd:Teth39_0311 GerA spore germination protein" /codon_start=1 /transl_table=11 /product="GerA spore germination protein" /protein_id="YP_002456562.1" /db_xref="GI:219666127" /db_xref="InterPro:IPR004995" /db_xref="GeneID:7257006" /translation="MAKRFFTMIKELTQRPYRKRIRVVHKVPIDQEWDKPVSFARIKE ELSKSSDIIFRDFILRGKEDIPCSLGMVDGLVDKDLLDAYILRVIMVEAVDDPVFQEM TLKNVNDRLLDLFTPANEVKKIGRLGEAIDGMLSGDAVLFIKESQEALVISARGWSDR GVGVPQNESSIRGPKEGFNETLRTNTSLLRRKIKHPSLRLLSMKIGDLSKTDVVIAYV ETIANMDVVGEVLKRLSRIRTDAVISGDMLEELIEDHPYSPFPQISNTERPDIVTAEL LEGRVAIMVDGTPSALIVPVTLPMFMQVNDDYYQRAMIVIIVRTIRYWGAFIALLAPS LYIAVTTFHQELLPTSMLLSLAASREAVPFSALGEALLMLLALEILQEGGLRLPKPIG QTIGIVGALIIGEAAVGAGLISPIMVIVIGFTAVSSYTIPYYDLAIAIRLIRLPLMVL AGTMGFFGLAIGLYLCIIHLLGLRSFGTPYLSPIAPLRIRAFLQDTFVRAPWWASRKI PDLVDVHDTKSGRKK" gene 58397..59509 /locus_tag="Dhaf_0058" /db_xref="GeneID:7257007" CDS 58397..59509 /locus_tag="Dhaf_0058" /inference="protein motif:TFAM:TIGR00912" /note="TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: mta:Moth_1460 spore germination protein" /codon_start=1 /transl_table=11 /product="spore germination protein" /protein_id="YP_002456563.1" /db_xref="GI:219666128" /db_xref="InterPro:IPR004761" /db_xref="GeneID:7257007" /translation="MERISTHQFTILSTAVLLGTTYMVAGSGLAGAAGRDGWMAIPPG FALGIPLALMIFSLMPRYPGMNLIEISEKVLGKWLGKGMGLLYSAITLYFGAILLGQG VDMYNRSVLPLMPQYILVLGLFVIVVYLYFSGIEVLSRFSEVVFPIIFLSLVFIALFS IPRFERGELFPMLDNGIKPLLSGIRNVAPWPMEYILFLGGLLPFLPRKAKDLKVLKKG VWKAFFMVIALSTLMVVIQIMTFGPFETSRLTYALLVLGNMIEISRTISGVEVIFTLI WTGALALKVTALMFAGIWGLRTVFGIKSRKAGVRTGVVVGIIYVLIPLYTLTGITVVV EIQLVDQYLILPFTMVWVVLVWGVERWKRRKKSFSH" sig_peptide 58397..58495 /locus_tag="Dhaf_0058" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.778 at residue 33" gene 59521..60717 /locus_tag="Dhaf_0059" /db_xref="GeneID:7257008" CDS 59521..60717 /locus_tag="Dhaf_0059" /inference="protein motif:TFAM:TIGR02887" /note="TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: chy:CHY_0337 spore germination protein" /codon_start=1 /transl_table=11 /product="germination protein, Ger(x)C family" /protein_id="YP_002456564.1" /db_xref="GI:219666129" /db_xref="InterPro:IPR008844" /db_xref="GeneID:7257008" /translation="MLLLIMGVLLLGGCGGKREIDELAYMLGIGIDQGKEEGTYLVTM QIAEPKTSGGGAAELENWTISMETKSLSTIMEQAAEAFSKQPFAGTVRVIVLGEDLAG AGINEALDYFQRFYEFRRTIYLLVAKGQAKDIMEAELRTKQIPSLNLFDTIEGQRRQS VFPITRLGHYLTVLGRESQNPIIPRVEKVQPGEHGLFYSDKEGQEILIHESAVFEGGK CVAKLNDQETKGYLWLDNEIESRVLEGEDGDGVTVTAWVLKSKTKYKVENIDGKMGIK FNIKTAVSINEILGKGEQADIYRWQQFIKELQPLMAQAIQEECEAAVAKSKEQGLDFI GIGRKIEIKNPKYWREIQENWPQGIKDIPVAYDINVKIEHSGLARNSPVSPQENGAKG GSHTLQ" gene 60785..62203 /locus_tag="Dhaf_0060" /db_xref="GeneID:7257009" CDS 60785..62203 /locus_tag="Dhaf_0060" /inference="protein motif:PFAM:PF01276" /note="PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cyb:CYB_0482 Orn/Lys/Arg decarboxylase" /codon_start=1 /transl_table=11 /product="Orn/Lys/Arg decarboxylase major region" /protein_id="YP_002456565.1" /db_xref="GI:219666130" /db_xref="InterPro:IPR000310" /db_xref="InterPro:IPR008286" /db_xref="GeneID:7257009" /translation="MLNLGHKLLQYEAQKLISFHTPGHKGKAEFFTDLHFPDQDLTEL PGLDMLHSPAGVIAQAQARAAAVYQSDASFYLINGATVGNQGMFMALAGTGKRGKDLQ LPKVLVERQSHRSVFSALVLSGCEPEYIPSVVHPEFGLPLGLKSIAEVDLGEFLGVHL TYPGYYGTLPDLAMIAAQRDRQAVQVSILVDQAHGSHYLSPLFPKGALAYGADLVLCS THKTLSALTQAAMLHVQGSRIPLSALKEALELLQSSSPSYLLMASLERAVEHALESRR WELLHEAVQELHHRVGGSLRILNPQDVGTYGIAGLDWTKIMINTQRLGVAAPRCVEHL RKSYGIDPELWDDKNILFLLGIGNTPEEVEILTKGLLSLASLNKDVVASPEEMVFEIP LPPVRLTPRQAYFARKRKIPLAESVGHIVGESISPYPPGIPWIVMGEEMTPEILELLT RHKGRWQGWEDAGQGVWIIEEV" gene 62205..63053 /locus_tag="Dhaf_0061" /db_xref="GeneID:7257010" CDS 62205..63053 /locus_tag="Dhaf_0061" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="KEGG: ppd:Ppro_1664 DNA polymerase III, delta prime subunit" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_002456566.1" /db_xref="GI:219666131" /db_xref="GeneID:7257010" /translation="MNIALHLIEKAAQEGRLAHLLLFHGGSGPERRKAGLEIARRINC TSGQDAPCGHCPSCKKILSGNHPDVEVVKPAKASIGIEQILDWQERVYRKHYEGNYKV FILEEADKLTIPAANALLKVIEEPPERTLIVLSAQNAEVLLPTIQSRAQAVYFPFRGE EEWLKSLEESLDPWEAREAFRLSSHNPELAYEILTLGVEKVKEWIRGFEQAVEEGDFL KLFPLFPVEKKEAELYLHILALGIAQKHQVNPQAMLAVGKAIEQIQMQANPRLVIEGL ALKLFQ" gene 63067..63915 /locus_tag="Dhaf_0062" /db_xref="GeneID:7257011" CDS 63067..63915 /locus_tag="Dhaf_0062" /inference="protein motif:PFAM:PF04468" /note="PFAM: PSP1 domain protein; KEGG: hmo:HM1_0757 PSP1 C-terminal region, putative" /codon_start=1 /transl_table=11 /product="PSP1 domain protein" /protein_id="YP_002456567.1" /db_xref="GI:219666132" /db_xref="InterPro:IPR007557" /db_xref="GeneID:7257011" /translation="MVEVVGVRFKRAGKIYYFSTGDLALNANDKVIVETARGVEYGEC VLAPRQVPEADVVMPLKPVIRKATPEDERIVEVNRTKEKEAFDICLKKIGDHQLPMKL VDVEYTFDGNKIIFSFTAEGRVDFRELVKDLASIFRTRIELRQIGVRDEAKMLGGIGS CGRVLCCSSFLGDFEPVSIRMAKDQKLSLNPTKISGICGRLMCCLKYENGAYDESHCK GQCGKQCHQREEDILVLSEESVLKALEEQELKGERGSAVPTAGKGRQEGRHKKGEKNR GKSEKV" gene 63912..64223 /locus_tag="Dhaf_0063" /db_xref="GeneID:7257012" CDS 63912..64223 /locus_tag="Dhaf_0063" /inference="protein motif:PFAM:PF06156" /note="PFAM: protein of unknown function DUF972; KEGG: hmo:HM1_0756 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF972" /protein_id="YP_002456568.1" /db_xref="GI:219666133" /db_xref="InterPro:IPR010377" /db_xref="GeneID:7257012" /translation="MSQLSQALTEVEEKLNSLIEEVQRLLPYVKSLEDENARLKRELC ALPEKERSRVIANAEHLQGVAHDNLERLYREGFHVCHLHFGQPLEEGDCLFCMGFLRK D" gene 64244..65089 /locus_tag="Dhaf_0064" /db_xref="GeneID:7257013" CDS 64244..65089 /locus_tag="Dhaf_0064" /inference="protein motif:PFAM:PF00590" /note="PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: drm:Dred_0063 uroporphyrin-III C/tetrapyrrole methyltransferase" /codon_start=1 /transl_table=11 /product="Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase" /protein_id="YP_002456569.1" /db_xref="GI:219666134" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR008189" /db_xref="GeneID:7257013" /translation="MATVQRGTLYICGTPIGNLGDITLRALEVLKGVDLIAAEDTRHS RKLLDHFGIATPLTSYHEHNEKGKALELVRRLEQGEAIALISDAGMPGISDPGQEVIQ LCLEKGIPLDVLPGANAGLTALLLSGMPNDHFLFHGFLPSQSGARKKELQNYAQLPFT QIFYEAPHRLVATLEDLWEVFGERETAVVREITKLHQSVHKGTLSTLIHEFKDTAPRG EICVLTSPYIPVPPTGGEKEWRQEVQELTEQGMKPNDAMKVVAQKYGVSKREVYQAVL SQKKN" gene complement(65222..65491) /locus_tag="Dhaf_0065" /db_xref="GeneID:7257014" CDS complement(65222..65491) /locus_tag="Dhaf_0065" /inference="protein motif:TFAM:TIGR01439" /note="TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: pth:PTH_0067 regulators of stationary/sporulation gene expression" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AbrB family" /protein_id="YP_002456570.1" /db_xref="GI:219666135" /db_xref="InterPro:IPR006339" /db_xref="InterPro:IPR007159" /db_xref="GeneID:7257014" /translation="MKSTGIVRKVDELGRVVLPIELRRTLGIDEKDALEIYVDQEKII LKKYEPACVFCNNATDVQIFRGKNVCRECATAMGEAASGNQPEAV" gene 66076..66294 /locus_tag="Dhaf_0066" /db_xref="GeneID:7257015" CDS 66076..66294 /locus_tag="Dhaf_0066" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456571.1" /db_xref="GI:219666136" /db_xref="GeneID:7257015" /translation="METGRFQPAIEQERFGHETRTRVSPKPPRYREILGGAGGPDGAE GLSGSFVRVAYGATGVNQNPGELTFGPE" gene 66426..68369 /locus_tag="Dhaf_0067" /db_xref="GeneID:7257016" CDS 66426..68369 /locus_tag="Dhaf_0067" /inference="protein motif:TFAM:TIGR00398" /note="TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: chy:CHY_2621 methionyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="YP_002456572.1" /db_xref="GI:219666137" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002304" /db_xref="InterPro:IPR002547" /db_xref="InterPro:IPR004495" /db_xref="InterPro:IPR014758" /db_xref="InterPro:IPR015413" /db_xref="GeneID:7257016" /translation="MKYYITTPIFYPNASPHIGTAYTTVAADAFARYHRLKGHDVYFL TGTDENAQKIVRTAESQGMEPLAYVDGVVERFKALWEELDISYDDFIRTTEERHHEVV KKIFTKLYEQGDIYKSEYEGWYCTPCETFWTENKLMDGKCPNPDCGRDVELLKEESYF FKLSKYQDALLRHIKDHPDFIQPASRRNEMIKFIEGGLEDLCVSRTTFQWGIQVPFNP KHVVYVWLDALINYISALGYPDGELYQRYWPAEVHLMGKDIVRFHAVIWPIILMALDV PLPKVVYGHGWYLSKEGGKISKSRGNVQDSFELIRRYGSDAIRYFLLREMQVGTDGAY SEDSLVERLNSDLANDLGNFVSRSLAMIVKYRGGVIPKAAEPTELEAELRALGQEVVA KVEERLEAHDPAGALENLWRLVSRMNKYVDETAPWTLAKQEGQQARLDTVLHTFAEAI RILGILCAPFMPKLTGKMFRQCGISDELLAWEAAKEWAVLGEGIQVQRGEALFPRIDL AQFSVEEEKASVNEIKETPTVEENKVEFEPIKEEISIDDFAKIDLRVAKVLHAEKVEK TDKLLKLEIEVAGKPRTIVSGIAQHYAPEDLVGKHVVIVANLKPAKLRGITSEGMILA ASHEGVLEVLVLDKELPAGARVK" gene 68366..69127 /locus_tag="Dhaf_0068" /db_xref="GeneID:7257017" CDS 68366..69127 /locus_tag="Dhaf_0068" /inference="protein motif:TFAM:TIGR00010" /note="TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: mta:Moth_0049 TatD-related deoxyribonuclease" /codon_start=1 /transl_table=11 /product="hydrolase, TatD family" /protein_id="YP_002456573.1" /db_xref="GI:219666138" /db_xref="InterPro:IPR001130" /db_xref="InterPro:IPR006992" /db_xref="InterPro:IPR015991" /db_xref="GeneID:7257017" /translation="MIWDTHAHLDDPRYQGDFQGVLDNMARAHITRVTNVGYDLPSSE RSVRLAHQYDAVYAAVGVHPHDAQGAAEETWESLTQLAREDKVIAWGEIGLDYYRDLS PRKIQQEVFIRQIELADQAGLPIIIHNRDAHQDLLEIVKAHTPKKGGVFHCYSGSWEM AKLILNLGFYISFAGPLTFKNARHTVEVAEKVPLDRFLVETDSPYLTPEPYRGKRNEP AYVRQVVERFATIRGLEVEEAARLAFENGNRLFGL" gene 69345..70193 /locus_tag="Dhaf_0069" /db_xref="GeneID:7257018" CDS 69345..70193 /locus_tag="Dhaf_0069" /inference="protein motif:PFAM:PF06725" /note="PFAM: 3D domain protein; KEGG: mta:Moth_0050 hypothetical protein" /codon_start=1 /transl_table=11 /product="3D domain protein" /protein_id="YP_002456574.1" /db_xref="GI:219666139" /db_xref="InterPro:IPR010611" /db_xref="InterPro:IPR011098" /db_xref="GeneID:7257018" /translation="MYSLPIATYTDYWRLAKNRSLTMGGTLVLAGSTLLYAPADAFPK RMELTLPVFERNSQSPASAPGSQALGREETLLNPEGTELPLTEGIGTAEGGGVEIGQI AMTYRIEDVEVPINTEYIESDRVLPGTSQVQEEGQVGIERQVIRRTTIGGELSDEQIV NQFFLNAPKKRVVIQNTRPVERSDVDLSQYTVLKTFEVEATAYTYTGNPTATGVWPRE GLIAVDPRVIPLGTEVYVEGYGHAIAADTGGAIKGNIIDVFFPSLQRCIQWGRRPVVI HILDNK" gene 70287..71456 /locus_tag="Dhaf_0070" /db_xref="GeneID:7257019" CDS 70287..71456 /locus_tag="Dhaf_0070" /inference="protein motif:PFAM:PF06725" /note="PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: mta:Moth_0051 hypothetical protein" /codon_start=1 /transl_table=11 /product="3D domain protein" /protein_id="YP_002456575.1" /db_xref="GI:219666140" /db_xref="InterPro:IPR007137" /db_xref="InterPro:IPR010611" /db_xref="InterPro:IPR011098" /db_xref="GeneID:7257019" /translation="MLEKTRTSVFSLVRSSRKAQISVTLLTVAFIVASVFLLKAKTVT VEIDGGKQSLTTLYSTVGAALEHSRLGIYPEDIVEPNRETDIAKGLEIKITRSLPVEL TVDGETYPARTPAPTVGEALVDLSNRLGLDLKVTDEVNLHREAVLVADAKLEVRRAVP VKVKVDGKEIDTYLAPRTVEEALEKLDIVLNEKDKVSLPMKHMIEAEDEIQVVRVEEK IETMTNEIPYQTVAQPADFPIGLPDKVVTKGVNGQHEQTVKITMEDGIEVAREVLQQE VLRAPVNQVVSRGSQTTISRGGKTIEFKRAYLMRASAYSGGGRTATGHNVRYGVIAVD PRVIPLGTEVYVDGYGEAVALDTGGAIKGNRVDLYMNTEESCWSWGVRSVVVYVK" sig_peptide 70287..70409 /locus_tag="Dhaf_0070" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.962) with cleavage site probability 0.875 at residue 41" gene 71668..72384 /locus_tag="Dhaf_0071" /db_xref="GeneID:7257020" CDS 71668..72384 /locus_tag="Dhaf_0071" /EC_number="3.5.1.28" /inference="protein motif:PRIAM:3.5.1.28" /note="PFAM: cell wall hydrolase/autolysin; KEGG: drm:Dred_1578 cell wall hydrolase/autolysin" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="YP_002456576.1" /db_xref="GI:219666141" /db_xref="InterPro:IPR002508" /db_xref="GeneID:7257020" /translation="MRRPIVIPGRQTQGMAIIIVLTVMFGLVLSVFYQGSAAVLGPLE TKYKVVVDAGHGGYDPGAITKQGVYEKEINLEMAKRVKELLEPAGIEVILTREEDIDY VPEGVRGRQSKKQADLNHRISLAAEAEADTLISLHLNATPSGRNTGAETFYYFDSEEG KRLAETIQQELIKVPGMNRRIAKPGDFYLIKNAPMPAVIVELGYISNPKEFARLRQSW YQDQLAQAVAKGVANYFGLP" gene 72606..73760 /locus_tag="Dhaf_0072" /db_xref="GeneID:7257021" CDS 72606..73760 /locus_tag="Dhaf_0072" /inference="protein motif:PFAM:PF00704" /note="PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: sth:STH1790 spore peptidoglycan hydrolase" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 18" /protein_id="YP_002456577.1" /db_xref="GI:219666142" /db_xref="InterPro:IPR001223" /db_xref="InterPro:IPR011583" /db_xref="GeneID:7257021" /translation="MKRFLTLNLIAVLVLSFSLVGCNTAQQQNTQAPNQIATESGEPP KAEAETRQDVLGEEKRVVMGFYTDPEGEIPGSKESMMKNIKLMDEVSFFWYSFDANGK ILTTGKKDLSIKEAAQKNGAKAYALIHNMRGGLFDANLAHSVFANPQTRSKFINNIVQ LVINEKWDGVAIDIEKTPPADRNNFTAFLGELHGALKAKDKVLNVSIPAKFIDYPSDL WSGAYDYASIGKNADQIVLMTYDEHGLGTTHGPISSHAWVNKVISYAVTKIPREKIVL GLPVYSFDWGSNKPTMPDYLSYEQSMARAKKHGVEVGYDEEHKVPWYTYTANGVRHEV YFENKQSLQPKMEYAREHKLHGVAIWRLGMEDPSIWDSLVKTYGTNKNKK" sig_peptide 72606..72689 /locus_tag="Dhaf_0072" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.703 at residue 28" gene 73896..74513 /locus_tag="Dhaf_0073" /db_xref="GeneID:7257022" CDS 73896..74513 /locus_tag="Dhaf_0073" /inference="protein motif:TFAM:TIGR00334" /note="KEGG: aoe:Clos_2658 primase/topoisomerase like protein; TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein" /codon_start=1 /transl_table=11 /product="primase/topoisomerase like protein" /protein_id="YP_002456578.1" /db_xref="GI:219666143" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR004466" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="GeneID:7257022" /translation="MAKMIEELIVVEGKNDAHAVRRALGNVDILWTEGYGLTQEKLAY IAEAAKRCGVIVLTDPDSVGEQIRERIRRQVPEAKHVYLSKKDARSPKDDDIGVENAS PEDIQKAFQKIRTDTLYSEPKNNEYPTAGTSFTMKDLLEAGLAGLSHSAERRLAVGKI LGIGDANAKQFLRRLNRFGITHEEFNKAVREAIHGERSELYPAHP" gene 74476..75312 /locus_tag="Dhaf_0074" /db_xref="GeneID:7257023" CDS 74476..75312 /locus_tag="Dhaf_0074" /inference="protein motif:TFAM:TIGR00755" /note="TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: amt:Amet_0138 dimethyladenosine transferase" /codon_start=1 /transl_table=11 /product="dimethyladenosine transferase" /protein_id="YP_002456579.1" /db_xref="GI:219666144" /db_xref="InterPro:IPR001737" /db_xref="InterPro:IPR011530" /db_xref="GeneID:7257023" /translation="MENAANYTRRILKGGAKAHKSLGQNFLMDDRVIEAIAAASIKDP EIPVVEIGPGLGVLTRVLAQKAQKVWAVELDRGKVNLLQRELQGLPVDILNMDALKLD LKDIWGTGKGVLVGNLPYYITSPLLMHFLEQKDSLASMVVMVQKEVADRLVAKPGGKD YGILSIAAQVSAQGEKLFEVPPQAFWPAPKVTSAVVRFELRSYPGFRVKEKDFFRVVK AAFSQRRKTLGNSLAGGLGLPKQQIGEILAAAGVDEQRRAETLSIDEFQAVTEAVMKN LD" gene 75428..75775 /locus_tag="Dhaf_0075" /db_xref="GeneID:7257024" CDS 75428..75775 /locus_tag="Dhaf_0075" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456580.1" /db_xref="GI:219666145" /db_xref="GeneID:7257024" /translation="MVKKYNYRPGREKKSRTIKKVQHRHPSEYLNDLEEWQRYQYDPG HYLGGNIHPQLKYASGTKAGKYFAALCLMLGVISGIGTVFTFIEGVGNILALLMTLLF ISVGLTCFGGSKE" gene 75850..76251 /locus_tag="Dhaf_0076" /db_xref="GeneID:7257025" CDS 75850..76251 /locus_tag="Dhaf_0076" /inference="similar to AA sequence:KEGG:CHY_0834" /note="KEGG: chy:CHY_0834 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456581.1" /db_xref="GI:219666146" /db_xref="GeneID:7257025" /translation="MEEELLRQILTQLQGLTSEVQGVKDEIQDLQGLKGEVQGLTGEM QGLKGEVQGLKSDVQGLKSDVQGLKSEVQAIKDSQERMESDLSILQYDVGNLKRDVKD IKRDLGHVWTDIKHFDNRLAAQKEKVDKLIK" gene complement(76333..77904) /locus_tag="Dhaf_0077" /db_xref="GeneID:7257026" CDS complement(76333..77904) /locus_tag="Dhaf_0077" /inference="protein motif:PFAM:PF02219" /note="PFAM: methylenetetrahydrofolate reductase; KEGG: sat:SYN_02872 methylenetetrahydrofolate reductase" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate reductase" /protein_id="YP_002456582.1" /db_xref="GI:219666147" /db_xref="InterPro:IPR003171" /db_xref="GeneID:7257026" /translation="MENRFKQSLLDPNTLSVTWELVPGRGAREKAQESALLAAEQAAK GGKVHALTITDNPGGNPAILADYLGQEILKLGIEPLVHFTCKDKNRNQMESQLYALDR AEVRSLLVMTGDYTVSGFKGRPKPVFDLDPTHTLELIAQMNEGLGIPGPKGMSYHQPS DFFAGAAVSPFKGTEAEQMVQYYKLKKKVTSGAQFIVTQLGYDARKIHEVLQFMKLND LNVPLVGNIYILPFGAAKIMNQNQLPGCVVTDKLLAEIDKERTAEDKGVSARLLRAAK MYALMKGMGFAGVHIGGHNIKYEQVEYVIEKGEELSKDWLALVPEFDYPMPNGFYYYE KDPKTGLNTTTPVNRKNLPLDAPVGVAYSGMRLMHSMLFTPGKNFFPVMRKIYKGRKD NRKHGLEHLAKVITNDCKDCGDCAMFELAYLCPMSQCPKNQRNGACGGSYQGWCEVYP NQKQCIYVRAYARLKKYDEEGDLDSHHIPPANWDLYQTSSWSNFFLGRDHSGKILGIP TPEEEAKAKGADPAK" gene 78345..80111 /locus_tag="Dhaf_0078" /db_xref="GeneID:7257027" CDS 78345..80111 /locus_tag="Dhaf_0078" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: gur:Gura_3045 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_002456583.1" /db_xref="GI:219666148" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR013163" /db_xref="GeneID:7257027" /translation="MKSIRTRLILVFLLTSIMMAGIVGGFNIYNQTVLTQNNVDEYRK TLYEEYDRGLKMNVEIAISIIQGVYREQQEGLLTEAEAREKAAALVRTILFDQGNYIW VDTVEGINVVYLGKDSEGKSRIDAVDPSGFLYIRELIKNGMQEGGGYTDYEFAKPNES EPKPKRSYTQLFEPYAWIVGTGNWVDDIESKVSEKEMYYNQHMLNDIIKVVAAMVIGL GVVAVLAFVISGRIAQRVQRIAQGAREVAQGNLTIDKIVVDTQDELGQLAGDFNQMTD NLAEVVKKVAYASEQVSLTAQELSSGAEESAQAAMEVAAAVTDVAQGTERQIRSVSEV SEVVKEMAAGMEQVLTNTGYVVRSAEETSQAAAKGQGSVETTIEQMNHIQKVVNHSAE LVERLGLRSQEIGQIIETISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLA EQSQGAAKQISALILEIQGDTVKAVEAMQEGTHEVGKGAKVVVEAGSAFAEIAELIQE VTGQVRDISAEIEQISQGNERIIRAVEEVDQISREITDQTYGVSASTEEQSASVEEIA SSCQVLENMAMELEKILAKFKV" sig_peptide 78345..78422 /locus_tag="Dhaf_0078" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.760 at residue 26" gene 80344..82110 /locus_tag="Dhaf_0079" /db_xref="GeneID:7257028" CDS 80344..82110 /locus_tag="Dhaf_0079" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: ppd:Ppro_0042 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_002456584.1" /db_xref="GI:219666149" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="InterPro:IPR013163" /db_xref="GeneID:7257028" /translation="MKSIRARLILAFIFTSMLMSIIVGGYNIYRQIDILKNNVQSYRE TLFAEYDRGIKTDVEIAISVIDKVYKEQQAGLLSEEEAKTKAADLVRELRFDGENYFW VDTTEGINVVLLGRDTEGKSRLDAVDPNGYAYVRDGFIKNALSGGGYSDYEFAKPNET EPTPKRGYTQLFEPYGWVIGTGNWVDDIETEVIAQELIYQKQMSKDIISISVAMILGL IIVSAVGFKISQGITRQVKQVAQGANEVAQGNLRIEKIQVDSRDELGQLAQDFNHMAE NLTQLVKQVSLASEHIASSSQQLSAGAEQSAQAANEVASAITEVAQGTEKQMTAVNDV AAVVEEMAAGMGQVLNNTEYVVRSAEGTAKATDKGQQSIHTTVKQMESIQKAVNHSAS LVEHLGVRSQEIGQIVEAISGIADQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLA EQSQIAAKQIADLIGEIQEDTHKAVDSMKNGTQEVEIGSKVVHEAGSAFEEIAGLIQE VTGQVRGISHEIEEISQGNERIVASIHEVNQISKSIAEQTLNVSASTEEQSASVEEIA SSSQLLAKMTEDMEQALHKFKI" sig_peptide 80344..80421 /locus_tag="Dhaf_0079" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.907) with cleavage site probability 0.711 at residue 26" gene complement(82100..82813) /locus_tag="Dhaf_0080" /db_xref="GeneID:7257029" CDS complement(82100..82813) /locus_tag="Dhaf_0080" /inference="protein motif:PFAM:PF07786" /note="PFAM: protein of unknown function DUF1624; KEGG: mma:MM_1197 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1624" /protein_id="YP_002456585.1" /db_xref="GI:219666150" /db_xref="InterPro:IPR012429" /db_xref="GeneID:7257029" /translation="MTSTRFPIIDSLRTLALALMITYHLIYDLDQWTGLAVDVDALFW FSIGKTAALLFIFLSGLSSGFSKHPLKNGLRVLFFGMIITLVTYVTFPEQYVRFGILH FLGVMMVLYPLIQKLPNGALILGSVLIIAGGLIIKDQAVNTPLLLPLGFMYPGFATMD FYPLFPYSGVTLLGVPCYRYFFAEHSRTNASVPPAEKSKAAYPMVTWVSRHSLWIYLI HQPILLGLIFALKAIAIIS" gene complement(82899..83756) /locus_tag="Dhaf_0081" /db_xref="GeneID:7257030" CDS complement(82899..83756) /locus_tag="Dhaf_0081" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: pth:PTH_0082 hypothetical protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002456586.1" /db_xref="GI:219666151" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7257030" /translation="MYDVVIPAQNEEKSILAVLATVLKLPIKRVILVLNGCTDRTLDL TRTILDQRIHTIYFAEPLGIDVPRAIGALYARSLHTQGVLFVDGDTSGDIYDGLAKLL AALADGTDIALTNCYPYITHRAKLANLVLRFRGSLNKELGYFQLLGNATPTHGPHALS AKALEVLMPEAIAIPPLTLVLAKRFDLKVKVATSIRHQDLKSPRKHRRHARLIAETII GDCVMGLTLARNEEVTRSLGKHKMLGYHPERRFDILQLWTESLITTHSYCENHLIIPR DTPWLGGYS" gene 83903..84736 /locus_tag="Dhaf_0082" /db_xref="GeneID:7257031" CDS 83903..84736 /locus_tag="Dhaf_0082" /inference="protein motif:TFAM:TIGR02855" /note="TIGRFAM: sporulation peptidase YabG; PFAM: peptidase U57 YabG; KEGG: pth:PTH_0083 hypothetical protein" /codon_start=1 /transl_table=11 /product="sporulation peptidase YabG" /protein_id="YP_002456587.1" /db_xref="GI:219666152" /db_xref="InterPro:IPR008764" /db_xref="GeneID:7257031" /translation="MLKVGDIVARKSHKQDLFFRIEQIMSIKGERIAILKGINLRLIA DAPLQDLVEKEPSEVAHYQREDYQDIYNKLKIVVNQRKYVPEVQDEFYEIPGRVLHLD GDEEYLSQCIKTYQQLGLDAKGICISEAEQPKKIRQVLQENPTDIVVLTGHDGFLKGK KDFKSLDSYRSSRFFVQSVLEARRFQPNRDALVIFAGACQSNYEAIIRAGANFASSPK RTLIHAFDPVFIVERIAFTPIDQMVSLKEIIQHTVTGTDGLGGIETRGQLRKGYPRSP Y" gene complement(84790..85137) /locus_tag="Dhaf_0083" /db_xref="GeneID:7257032" CDS complement(84790..85137) /locus_tag="Dhaf_0083" /inference="protein motif:PFAM:PF03734" /note="PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cth:Cthe_3006 ErfK/YbiS/YcfS/YnhG" /codon_start=1 /transl_table=11 /product="ErfK/YbiS/YcfS/YnhG family protein" /protein_id="YP_002456588.1" /db_xref="GI:219666153" /db_xref="InterPro:IPR005490" /db_xref="GeneID:7257032" /translation="MNPLPQRRIIIRRSSRQIELYDGNQLLACYPCAVGKSSTPTPLG NYAVATKVMNPGGAFGTRWLGLSLPDYGIHGTNKPASIGTQASLGCIRMHNHHVEALY DQVGAGTPVIITE" gene 85278..86099 /locus_tag="Dhaf_0084" /db_xref="GeneID:7257033" CDS 85278..86099 /locus_tag="Dhaf_0084" /inference="protein motif:TFAM:TIGR02069" /note="TIGRFAM: cyanophycinase; PFAM: peptidase S51 dipeptidase E; KEGG: cth:Cthe_2205 cyanophycinase" /codon_start=1 /transl_table=11 /product="cyanophycinase" /protein_id="YP_002456589.1" /db_xref="GI:219666154" /db_xref="InterPro:IPR005320" /db_xref="InterPro:IPR011811" /db_xref="GeneID:7257033" /translation="MNHYVEGKLLIIGGAEDKKGECKILKRFIQEAGGRESRVVVLTA ATEMPEQVGSEYKELFENLGAAEVQVLDIAERVSANRESISQELQKATGIFFTGGDQL RITGILGGTRLGRTLHNLYQRGVIIAGTSAGASVMSDTMIVGGEAGTPKKDTLTMAPG LGLLHSVVVDQHFAQRGRIGRLLTAIAQNPYVLGVGIDEDTSILVYSDGHFTVVGSQT VTVVDASPTMASNVSEISPGQALVLTPVLMHILSDGYRFDLKRRAASLNETPSGG" gene 86219..88876 /locus_tag="Dhaf_0085" /db_xref="GeneID:7257034" CDS 86219..88876 /locus_tag="Dhaf_0085" /inference="protein motif:TFAM:TIGR02068" /note="catalyze the formation of cyanophycin which may act to store excess nitrogen" /codon_start=1 /transl_table=11 /product="cyanophycin synthetase" /protein_id="YP_002456590.1" /db_xref="GI:219666155" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR004101" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011810" /db_xref="InterPro:IPR013221" /db_xref="InterPro:IPR013651" /db_xref="GeneID:7257034" /translation="MEILKIQAIPGANVYSYRPVIRAVVDLQEWTERTSDTFGDFNTR LVQCLPSLYEHFCSRGKPGGFVERLKEGTLVGHIIEHVTIELLTRAGQNIPYGKTLCL PEHPGHYEIIFNYDSLEGGLEGFKQGYALVQELLAGQKPNVTNRIERIREVIQRFELG ASTRAIIEAAEGRGIPVIRLNDSSLLQLGYGRNQKRVQAAMSDQTSCIGVDIACDKGL TKKLLYEGGIPVPDGVVTRNEDEAVEVFRQLDRLVVVKPYNGNQGKGVTLKLGTEAEV RAAFRVAQTYEEQVVVEEYIEGKNYRLLVVDGKMAAAAERIPAHVIGDGVSTVGELVQ LANSDPQRGEDHEKALTKIKIDPVVLMTLTQKKIALETVPADGEVVYLRDSANLSTGG ISVDVTERVHPDNAALAEYAARIVGLDIAGVDMVLEDIERPHQEQRGAIIEVNAAPGL RMHQYPTVGRPLDVGKIIVDHVMPKGNGRIPVISVTGTNGKTTTTRMIGKMLTDRELA VGMTTTDGIYVGGKLLLKGDTTGPESAQIVLRHPDVQVAVLETARGGILRAGLAYDYA DVAVVTNVANDHLGQYGMESLEDIAHVKSLIAEVVRPHSYVVLNADDPLVASFARKTK GKVIFFSTEKDNLTIRKHLAVGGIAVFVRRGNILLCQGDQSHKICGVKDLPVTWNGKA LHNLQNALAAIAVGWSLGLKAEGIRTSLSEFTSDPECNRGRLNPYTIGGVQVFIDYGH NAAGIKAIAQTLRKFKAPAVVGCVTVPGDRPDETIREVARVAARGFHRLIIREDGDLR GRRPGEIAGMIMEEAIASGMDPRRISVVLPEREAFCHGLDTCKPGEIFVMFYEHLEPI EEEIALRLESGPLAKEEEGFLEVANLGAI" gene 89105..90019 /locus_tag="Dhaf_0086" /db_xref="GeneID:7257035" CDS 89105..90019 /locus_tag="Dhaf_0086" /inference="protein motif:PFAM:PF02661" /note="PFAM: filamentation induced by cAMP protein Fic; KEGG: cpy:Cphy_0273 filamentation induced by cAMP protein Fic" /codon_start=1 /transl_table=11 /product="filamentation induced by cAMP protein Fic" /protein_id="YP_002456591.1" /db_xref="GI:219666156" /db_xref="InterPro:IPR003812" /db_xref="GeneID:7257035" /translation="MEYISVQQAAEQWGLSDRRVRLLCEQGKIEGVIREGRSYRIPAD SVKPLDGRILRGKIIPQEYTTLFARVDALKSQISKRRPFTQGELKRLQEEFLVEFTYN SNAIEGNTLTLRETALVLEGVTIDQKPLKDHLEAVGHRDAFLYIQRLVTEKAPVSEKI IKDIHSLVLMDRPDDKGVYRRIPVTITGAYHEPSQPYRIPVQMEQLIAAQKEEKRHPL ENAAVFHLKFEGIHPFIDGNGRTGRLLLNLMLMQQGYPPIDVKFADRKRYYACFDSYY KDKTAAPMVEMVAGYLEERLKRYLDILL" gene 90220..91092 /locus_tag="Dhaf_0087" /db_xref="GeneID:7257036" CDS 90220..91092 /locus_tag="Dhaf_0087" /inference="protein motif:TFAM:TIGR00154" /note="TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: pth:PTH_0096 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2C-methyl-D-erythritol kinase" /protein_id="YP_002456592.1" /db_xref="GI:219666157" /db_xref="InterPro:IPR004424" /db_xref="InterPro:IPR006204" /db_xref="InterPro:IPR013750" /db_xref="GeneID:7257036" /translation="MIKNQVEMFAYAKINLALAITGRRPDGYHELESVMQSIGIYDRI RVTLAEGGIQCSCGEWSGPENLAYRAAEAFLSGLGSSQGIHIDIEKNIPVQAGLGGGS ADAAAALQALNKLFKEPYTEEELKSFAAQLGADVAFCLKGGTQWATGVGEELKGLPHA PKINLVLIKPDQGVNTAEAYRAFDQEGKFSHLDYAGWQEALASGRAESLIPLLYNDLE PASMKLLPEIAWVKEELMKQNGCLGALMSGSGSAVFGIVQTEEQAEKIAAIWRERNYH VWVTHTMERGNIYG" gene 91085..91804 /locus_tag="Dhaf_0088" /db_xref="GeneID:7257037" CDS 91085..91804 /locus_tag="Dhaf_0088" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: drm:Dred_0095 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002456593.1" /db_xref="GI:219666158" /db_xref="InterPro:IPR000485" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7257037" /translation="MGRKLVPVKLDSYKPLREIVFESLREAIINGVLEPGERLMEIQL AEEMGVSRTPVREAIRKLELENFVVMIPRKGAYVAGVSHKDVADVFEIRSALEGLAAG LAAERATDQEIEEMERFLLYYEGQEMSLDQMVDSDTGFHALVYKASRNERLIQILANL REQIQRFRATSLSVPGRLKNAIDEHRSIVEALARHDVEEAQTLAMAHIVTAENVMFEA LRLSKEQGDSKEDSEANSEKE" gene 91816..92652 /locus_tag="Dhaf_0089" /db_xref="GeneID:7257038" CDS 91816..92652 /locus_tag="Dhaf_0089" /inference="protein motif:TFAM:TIGR01743" /note="TIGRFAM: pur operon repressor; PFAM: phosphoribosyltransferase; purine repressor; KEGG: aoe:Clos_2648 purine operon repressor" /codon_start=1 /transl_table=11 /product="pur operon repressor" /protein_id="YP_002456594.1" /db_xref="GI:219666159" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR010078" /db_xref="InterPro:IPR015265" /db_xref="GeneID:7257038" /translation="MEKMKRAERMVAVMQVLMSKPNMLIPLTTLAERFGAAKSTISED LLAVKESMRCTGQGRLETVSGAAGGVRYIPEISAEDAGGFLISLAERLSSQDRVLAGG FLYMTDLLYDPAVLRPLALIFAGVFREKKPDVVVTIETKGIPLALVTAEALGVPMVII RHGNKVTEGTAVSINYVSGSSKRIQSMTLGRRALEPGRKVLIIDDFMKAGGTALGMIN LLKEFDADVVGLGVLMETPREEEPKLVDHYLSLLQLRELDPVKGVVQVIPQNSFLHYQ KL" gene 92900..93154 /locus_tag="Dhaf_0090" /db_xref="GeneID:7257039" CDS 92900..93154 /locus_tag="Dhaf_0090" /inference="protein motif:PFAM:PF04026" /note="PFAM: SpoVG family protein; KEGG: drm:Dred_0098 SpoVG family protein" /codon_start=1 /transl_table=11 /product="SpoVG family protein" /protein_id="YP_002456595.1" /db_xref="GI:219666160" /db_xref="InterPro:IPR007170" /db_xref="GeneID:7257039" /translation="MNITDVRVRKVNVEGKMKAVVSVTFDNSFVVHDVKVVEGTNGLF VAMPSRKTPEGEFRDIAHPISSAAREVIQNAVLKAYQEAM" gene 93342..94703 /gene="glmU" /locus_tag="Dhaf_0091" /db_xref="GeneID:7257040" CDS 93342..94703 /gene="glmU" /locus_tag="Dhaf_0091" /inference="protein motif:TFAM:TIGR01173" /note="forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis" /codon_start=1 /transl_table=11 /product="bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase" /protein_id="YP_002456596.1" /db_xref="GI:219666161" /db_xref="InterPro:IPR001228" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005882" /db_xref="GeneID:7257040" /translation="MPHWAAVIMAAGKGTRMKSKLPKVMHTLAGKPMLQHVLDCVRSV EIPRSMVVLGHGREQIEATLDDRTEVVVQEEQCGTGHAIMQAIPHCHEVDHIIVLSGD QPLIRPETLRNLVRIHIEHNAAATLLTACFENPHGLGRILKEGDQFLRVVEEKDATPE ERLIQEINTGTYCFNVAKLREALKNITPKNAQGEYYLTDVFAVFHAQGEVIRTYCTED VHEALGINSRAQLAAAEDVARQRILSYWMEEGVTIIDPRSTFIEAGVVLQPDVVLQPF TILKGRTQVAEDAVIGPHTTLTDCTVGAGSEVSHTVGNQAVIGGHCTIGPYAYLRPGT VLQDKVKVGDFVEIKNSQIGEGSKIPHLSYVGDSQVGKSVNIGAGTITCNYDGVNKYK TIIRDKAFLGSNTNLVAPVEIGEGSVTGAGSTISKNVPANTLAIERSTQKHIENWVRN KKK" gene 94718..95659 /locus_tag="Dhaf_0092" /db_xref="GeneID:7257041" CDS 94718..95659 /locus_tag="Dhaf_0092" /EC_number="2.7.6.1" /inference="protein motif:TFAM:TIGR01251" /note="KEGG: hmo:HM1_0727 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="YP_002456597.1" /db_xref="GI:219666162" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005946" /db_xref="GeneID:7257041" /translation="MSVKELKIFCGNANRALAEEIVDYLGVPLGEAKVKRFKDGEITI AIDESVRGADVFVVQPTCNPTNDNIMELLIMIDALKRASARRITPVIPYYGYARQERK SKARDPITAKLMANLITTAGADRVVTMDLHAPAIQGFFDIPVDHLPGVPILAEYFKSK ELENVVVVSPDHGGVQRARNLAERIGAPLAIIDKRRPEPNVSEIMNVIGDIQGKQVIM IDDIIDTAGTITQGAQALKDRGAQDVYACCTHPVLSGPAFERLENSVIKEVVITNTIP VHPEKMISKIKVLSVAPLLGAAIVRIHEDLSVSKLFS" gene complement(95822..97681) /locus_tag="Dhaf_0093" /db_xref="GeneID:7257042" CDS complement(95822..97681) /locus_tag="Dhaf_0093" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: amt:Amet_1139 heavy metal translocating P-type ATPase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_002456598.1" /db_xref="GI:219666163" /db_xref="InterPro:IPR000695" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006404" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:7257042" /translation="MLTFFKNEEKRTILFLVLSLPALIMSFFEIGSFPVDPAWIAILL CGIPIIKGAIVGLVTEFDIKADVLVSLALIAAIFIGEIFAAGEVAFIMAIGAYLEERT VAKARAGIEKLVHLTPTTARLVNNGEERIVPAEQVKVGDVLRVLAGETIAVDGIIISG QTSVNQAVMTGESLPVDKSTGDEVSSGTVNQFGTFDMQATKVGEDSSLQRMIRLVQSA DAGKAKIVGIADRWATWIVVIALFSAGATWFITDEIIRAVTILVVFCPCALVLATPTA IMAGIGNATKFGILVREGDALERLSMVKRMAFDKTGTLTFGKPDVAAVESFDPSLSAD ELLALAASAELRSEHPLGKAVVAHYRTAAKASLPEPHDFRMLAGRGVYAVVNNRTIYA GNGELLQDNGIPLAQAIIEKAASYRNDGCTIIFVAIDGHASGFIALSDTLRPDAVDMV RNLEKLNVTSVLLTGDNHHAASHMAKIAGIHDIHTDCLPENKLAVIEQYQSKGDLVCM VGDGVNDAPALKKAHVGIAMGGIGSDIAVDAADIALVRDDIKNIPHLFALSKRTMNTI KINMALSMVLNFGAILLAMFGHLGPVVGALVHNVGSVVVIINSSLLLNWRKSK" gene 97887..98099 /locus_tag="Dhaf_0094" /db_xref="GeneID:7257043" CDS 97887..98099 /locus_tag="Dhaf_0094" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cdf:CD1126A putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002456599.1" /db_xref="GI:219666164" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257043" /translation="MKNRLEEIRKQRGIRQEELAAALAVSRQTIGSLENGRYNPSIIL AFKIARFFGMSIEEIFIYEEEEYDEK" gene 98089..98526 /locus_tag="Dhaf_0095" /db_xref="GeneID:7257044" CDS 98089..98526 /locus_tag="Dhaf_0095" /inference="similar to AA sequence:KEGG:Cbei_3550" /note="KEGG: cbe:Cbei_3550 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456600.1" /db_xref="GI:219666165" /db_xref="GeneID:7257044" /translation="MKNDSVKKYMGLTVLGLVLLAVGLGLIKWQGDAEGMLRTLPYIC VGVGAGVFGSNLGTAIKLRQFKKHPETARQVEIEEKDERNIAISNQAKAKAYDLMLVL YSALLLGFALMQVALQVILALVGAYLLVVFTMVYYLAKYQKEM" gene 98530..99147 /locus_tag="Dhaf_0096" /db_xref="GeneID:7257045" CDS 98530..99147 /locus_tag="Dhaf_0096" /inference="protein motif:PFAM:PF06555" /note="PFAM: protein of unknown function DUF1121; KEGG: wsu:WS1833 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1121" /protein_id="YP_002456601.1" /db_xref="GI:219666166" /db_xref="InterPro:IPR009501" /db_xref="GeneID:7257045" /translation="MVGMLERTIAGLQRNNMAGYFVHNRQELMALLSGLMEKGQTVGC GDSVTLEELGVFDFLRKGDYIFYDKYVPGLTSEDKRRLYIQNFAADTFITGTNAVTTD GKLFNIDGNGSRVAPMIYGPRQVIVVVGTNKITEDVESAIQRVRQIAAPMDAKRLKKE TPCTKLNRCVDCRHPQRICNDFVLITGQFVKDRIKVIIIDMEIGY" gene 99529..99726 /locus_tag="Dhaf_0097" /db_xref="GeneID:7257046" CDS 99529..99726 /locus_tag="Dhaf_0097" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456602.1" /db_xref="GI:219666167" /db_xref="GeneID:7257046" /translation="MNYAAIANLVHECVKNPTCLVTQKEKSGESKIKPDEFSVIQNVF SRHEVSGNGAAIGVLPMGFWS" gene 99733..100689 /locus_tag="Dhaf_0098" /db_xref="GeneID:7257047" CDS 99733..100689 /locus_tag="Dhaf_0098" /inference="protein motif:COG:COG0142" /note="KEGG: gtn:GTNG_2065 pre-ComX modifying enzyme" /codon_start=1 /transl_table=11 /product="Geranylgeranyl pyrophosphate synthase-like protein" /protein_id="YP_002456603.1" /db_xref="GI:219666168" /db_xref="GeneID:7257047" /translation="MNLQLDQIFFREIDSVLAKARLDAEMERLIRLSLNADSPTGELF RWAHLTRMSCECAGGDPEDALPGAIGMEFFALALDIFDDVQDQDNENMPWRQLPDAQA INLAICLLMLSDEAISAIPDNRLFREVAATLHRTGICASNGQFREFIYDDRQQVSFEQ YFEMAGQKAGSLTACACKIGAILGGAEEPVIHGLEQFGINLGILNQIRNDLNDFLDFF RKSDFVNNKKTLPYVYLLNTLKAEAAERFKELTQGHGEGAYGFGDREREYVRQLAAEE GVAPYCTVMFEIYCQKAREILEGIPVPEKNKENMKELVGESV" gene 100670..103027 /locus_tag="Dhaf_0099" /db_xref="GeneID:7257048" CDS 100670..103027 /locus_tag="Dhaf_0099" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; KEGG: gtn:GTNG_2064 sensor protein ComP" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002456604.1" /db_xref="GI:219666169" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7257048" /translation="MLEKVFKRQIYYIASLVFVVLGLGYFAACLTQPFIGLDLKNSNG QWLVATSDPNGEGYRSGIRVGDEILKINGEDAGKYRFAQKWETAEGASTIEFRSPGEL TDQTVTITPQPVLLTVLSEIPLLILGLVFWCLGFMTWYKRPFLEQARILFWMNWAFGL AIVLAHASSRCLLLSKEMEHITFSLAPVFLIIFISVFPVSNQNKLNKFGRKIATILFI LILVLTILQSLGFVQLISLIKKLSLSNMVIGILFTLWNLGILIKLPKNQPGKNEAYII LLGMGIGFLPFVLLSALPIIFNLEQLIYSQVSSLSISAIPISLYYVIINKYLPDSRRL YATALSYIGAAAILSFIVFLALFFLQVLPAIRLEYYTALLLFTLLSILCFHLIQIGIT RLWERSSFFQDKHTLKQKVAVLNENLTSLVAEERILDEIVNTLGIDGIFMIMENEQIG CLKKTAGRFKEHPRELETLENYFYHNQRLDLEAKMLPDDCPAGIYVPFIAQDSTCGIF FGRRSSRIKFEQSELPFFTLLAGQLEYQIIMSLVIGKLTKEINALTKSSGRSYRRKME LQGITNALFRKVERERKRLTDEICAGPLQWSMDLSRWLKYLKKECPADNKTLKVIAYL QERAEDLNYELNCIANDWGPPILTHLGLVPAVQWLCQEIMTEELSLISLEISRLGQQS RFKEDVEVTAYRFLQEGIMNSVRHSRSNMQTVRMTLNETWLELTVSDSGRGFDTGQIE NWLLTGTHFGLVEMKERIEGLGGELQIISGINRGTTLKALIPVFS" gene 103081..103767 /locus_tag="Dhaf_0100" /db_xref="GeneID:7257049" CDS 103081..103767 /locus_tag="Dhaf_0100" /inference="protein motif:PFAM:PF00072" /note="PFAM: regulatory protein LuxR; response regulator receiver; KEGG: kra:Krad_3810 two component LuxR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_002456605.1" /db_xref="GI:219666170" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7257049" /translation="MSVHWEKSQETEEQIHVLIVDSHRPFAEGTRALLSSEPRIVTIG IAGDEDSCLNFLRHSVPDVVLLDFYLRDISGLDLMDKIKAAHPALKVILMVEQSQEGY VLAASRKGAEGLLLKTCAVEEMIQAVLSVSKGGVYYSPSPLAFSQVEIDFHDLHFPAK PAEVLKRLLTPREKEIMSLLTKPLHNREIAAALGITARAAHLQVKIILLKFGIKTRLE AVLSWAYVDE" gene complement(103891..104166) /locus_tag="Dhaf_0101" /db_xref="GeneID:7257050" CDS complement(103891..104166) /locus_tag="Dhaf_0101" /inference="protein motif:PFAM:PF02583" /note="PFAM: protein of unknown function DUF156; KEGG: ckl:CKL_2720 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF156" /protein_id="YP_002456606.1" /db_xref="GI:219666171" /db_xref="InterPro:IPR003735" /db_xref="GeneID:7257050" /translation="MRQCMDFDNLHRRLNKVIGQIKAIDKMLEEDIPCEDILIQINAA KKALHKVGQVVLEGHLNHCVREGIEHGDADKTINDFAKAVEHFSRLT" gene 104455..105465 /locus_tag="Dhaf_0102" /db_xref="GeneID:7257051" CDS 104455..105465 /locus_tag="Dhaf_0102" /inference="similar to AA sequence:KEGG:Teth514_2260" /note="KEGG: tex:Teth514_2260 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456607.1" /db_xref="GI:219666172" /db_xref="GeneID:7257051" /translation="MRKEAGLELWRKLHEVTRLIGSLQPWDYLWDMDMITLELPEYEQ PFFVSVMGRNGECYAITVMEGPEALRGFYRLAENREIPPGQLIRYQNNLTCYFGDRDE LSKAERERIKALGLKFRGRNQWIFFRAFERGYAPHTLGEDQVLKLTRVFQELFMALRA FLEHGIAVDFEKGQTLYRCFDPEQKLWLTSAMPRFMPSPQYLVPVLEDEVMAARLKRQ KKVKEKLEIDTLFLDTFIDESKSGRPTIPILLILASRSSGMILDQEFLDPGDDEVAAV LGQVIDYIEDSGRPQKIFVRDEEMAHLLSDLCRKVDIPIAIEGSLQVIDDFAESFELL SF" gene 105627..106814 /locus_tag="Dhaf_0103" /db_xref="GeneID:7257052" CDS 105627..106814 /locus_tag="Dhaf_0103" /inference="protein motif:PFAM:PF02463" /note="PFAM: SMC domain protein; KEGG: cch:Cag_0588 hypothetical protein" /codon_start=1 /transl_table=11 /product="SMC domain protein" /protein_id="YP_002456608.1" /db_xref="GI:219666173" /db_xref="InterPro:IPR003395" /db_xref="GeneID:7257052" /translation="MKDKSNSPLIKELKLANLLSFGSETTDIQLNSLNVVVGPNGSGK SNLIDAISLLQASPSDLAVPIRKGGGIRDWLWRGMELPTASMEVITPSAPHGNKDLRY YLAFTALKQRFELIDECLETKEPYTNHSEPYFYYRYQNGNPVINNIKDQKRMLKREDI DPEQSILSQRKDPDQYPEITWLGKQFAAIRIYREWNFGRKALLRQPQGADAPNDYLAE DCSNLGLVLNKLRTNYKVKKKVLDLLSQFYEGIDDFDVIVEGGTVQLFLQEGEFMIPA TRLSDGTLRFLCLLAILCNPDPPPLICIEEPELGIHSDIIPVIGQLLKDASKMTQLIV TTHSEILVDELTDMPEAVLVCEKHEGMTRFRRLEKDLLKDWLERYSLGELWRKGEIGG TRW" gene 106808..107437 /locus_tag="Dhaf_0104" /db_xref="GeneID:7257053" CDS 106808..107437 /locus_tag="Dhaf_0104" /inference="similar to AA sequence:KEGG:Rru_A3750" /note="KEGG: rru:Rru_A3750 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456609.1" /db_xref="GI:219666174" /db_xref="GeneID:7257053" /translation="MVRSIRNTVKIYIEGGGEQEHLKRECRKAFSSFFDKIGFRGRMP RVVACGSRNEAFRDYCFSLKTSQSTGELAFLLVDSEGPVDAAFCNRPGQYLRTHESWN MPRNAQDEQIHLMIQCMESWFLADIDALREFFGNGFREGSLPRGSNIEDISKTDILDG LKNASGSSYKGKYGKAAHSFKLLEKVDPQKVKIAFPSVNRLHEELDKVL" gene 107633..110542 /locus_tag="Dhaf_0105" /db_xref="GeneID:7257054" CDS 107633..110542 /locus_tag="Dhaf_0105" /inference="protein motif:PFAM:PF00486" /note="PFAM: transcriptional regulator domain protein; KEGG: swo:Swol_0292 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator domain protein" /protein_id="YP_002456610.1" /db_xref="GI:219666175" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR013026" /db_xref="GeneID:7257054" /translation="MRNIRPKATEALLQRPRLLDKIALPGTQLTYIHADAGYGKTTLL LQYAKGRDDVVWMALDGKDREPIFFLQHLESSLKEKLIQFEFHATDYIPFAGSDTFAA VVLSALLKAIGSSVLTIIFDDVHVITHHQLTDLLTEWVKSSPPNLTLIMASRHELWSS LFRLKIAGEVVELTKKDLCFNQEEAERLWGFFDEAAYSATEGWTLAIQSYRLAAEGNK EFSLARLDADRDVSRYLFNEIFMGITEETRDFLKATSRLPELEVQGCNYLLNIKHSQK ILEELMHRNLFILRTSTTSYRYHTLFRNFLQQNDEGRGWEILHKAKDSCYGSGDYGRA AEYALLVEDEKIVHACLSAMAGEFFTKGSSRNLKRYFDFLEARHVELTPRVQLVKGIY LSDGGDFYQAEKYLKVVMPQLKSDEQDLYILAMTHLARVKRNRASFPESTACLDSLLP LLEGAPMAAWYGVVIEKIHNLTLTSQLTEALALTIAMMNKCLVNGDLRIKGWFERYLT VVYFYKGDYKNCLQAYEKSLAIPQEEQDQLMRHGVGVYAAKAYQIAGQEDKARPLLDA ELYRMRQLGLHEEFSINYLLYAETLNTAEQLKYYLGKAADFSAADRYLNMAEDYALLN RSTREHWLFVKIWKDCAEIFKQPEKAEEITAGILTLIQDTTPFFQTVAYGRMANALQV HQKNREQSIEYYRKSIAIGEEIGCYAYATLAYGKLASIYLEEGDEEQARSYTQRFLEL SCQYDHRYYIRFKPLFADVLKQAAEAGIMPDYTRELLDYGGYASVRVYINTLGTFYIA PAHERKSPIKIRTQKARELLAYLLEHREGVSKERIFDDLWWDSEANVTSLFHTRRGEI KRAFESAGAGNPILYERGVYRLEMAEISCDLDALRQAAAGFARQPSFINAQKVVEHYT GRYLGDLEALWAESTRLRLEELFLSAAVVLQEGYAESGDKSKARELTRRCAQMGH" gene 110681..111283 /locus_tag="Dhaf_0106" /db_xref="GeneID:7257055" CDS 110681..111283 /locus_tag="Dhaf_0106" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cac:CAC1509 specialized sigma subunit of RNA polymerase" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002456611.1" /db_xref="GI:219666176" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257055" /translation="MNKSILAKGGATIVTQVEKRELIGLAQKDETSFTELYNVYFPRI NNYVHYRVADYHDAEDLVSQILEKVFTKSHSYQENKAPFSVWLFRIARNTITDYYRSR KGVHNISLDGYTRDIVAREPEPVEIVELNELQHHLLKAIASLSQREQEIIALKFWSDL SNREIAKLVGISESNTGVILFRAMRQLRLILASQGMCIYE" gene 111276..111650 /locus_tag="Dhaf_0107" /db_xref="GeneID:7257056" CDS 111276..111650 /locus_tag="Dhaf_0107" /inference="similar to AA sequence:KEGG:PTH_2383" /note="KEGG: pth:PTH_2383 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456612.1" /db_xref="GI:219666177" /db_xref="GeneID:7257056" /translation="MNEKQQAEIYLTYLERLIAGEKDLGVVEEPEIRKLLFLAETILT HDLSSNSKLRDSLKEKILAQLGQVNPVGLREFSRDEELAEEDLEYVAAGFSQQLGWQK CPRCGSRLGNSTGDRECPNCKL" gene 111770..112012 /locus_tag="Dhaf_0108" /db_xref="GeneID:7257057" CDS 111770..112012 /locus_tag="Dhaf_0108" /inference="protein motif:PFAM:PF07862" /note="PFAM: protein of unknown function nitrogen fixation; KEGG: fgenesh4_pg.C_scaffold_3299000001" /codon_start=1 /transl_table=11 /product="protein of unknown function nitrogen fixation" /protein_id="YP_002456613.1" /db_xref="GI:219666178" /db_xref="InterPro:IPR012903" /db_xref="GeneID:7257057" /translation="MSIESAKAFMEKMKTDQDFAKKVMAAKDAEERRALVKEEGFDFS AAELKELGEEMSDSELDAVAGGSCLVDTCGMKELIW" gene complement(112081..113478) /locus_tag="Dhaf_0109" /db_xref="GeneID:7257058" CDS complement(112081..113478) /locus_tag="Dhaf_0109" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: paa:Paes_2372 radical SAM domain protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002456614.1" /db_xref="GI:219666179" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7257058" /translation="MSKKEVSPFHLFEYRGHPYLLNIEKMAAHSVSTELLPILHNIRE PQTKLPADQEKILRSWDLISECQDNDAPAVQMEPVPITYLYLFLTQSCNLRCIYCYGD GGEYGAGGSMDSATAKQAVDWLIAWSGNMKKIHLGFFGGEPFINFPLMKATVDYAQSK AQEAHKEVAFYVTTNATLLDDEKIAFIKEHQFSVQISFDGPKEIQDAQRPYANGQGSY DSVVPKIKKLLACVPEASGHGVLWGDTNPQLVKATLQDLGFTSITLAPASSSLFADES ERNPSSRKTQAQLQALEQETAAWLHHLRSRDKDILRGLRASSGGYGIYPGMIALLHNR RKYHFCGIGRKMVGVSVTGDIYPCHRFVGNDDYKLGHVGDENFNRDDYLQSPPALRAN CASCFARYYCAGGCLHDNLSSSGSSHVPSEAICRLRRRELELAAVIVSNLSSDDQAFL VNERIIAPKPCPLDF" gene 113685..114827 /locus_tag="Dhaf_0110" /db_xref="GeneID:7257059" CDS 113685..114827 /locus_tag="Dhaf_0110" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: pth:PTH_2382 ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="Extracellular ligand-binding receptor" /protein_id="YP_002456615.1" /db_xref="GI:219666180" /db_xref="InterPro:IPR000709" /db_xref="InterPro:IPR001828" /db_xref="GeneID:7257059" /translation="MLKSRVIKKSLAMIFILGLSLWPLGCTQVNPSEEIFIGVAWPFA SLDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAV IGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTDHGYIHVFRNIPSDQEIARQLAIY LAEQGHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQ AFGMDGIFIAKTATGGGTEFLVDAKSVGIEVPLIAGNSWDALSLTEDIENIGMTAEGL LVGSFFNPQRPDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPAT LAQGLRDLGPWEGVMGMHRFDGRGDDIGDLVVLKKMKDGRFEYLGH" sig_peptide 113685..113771 /locus_tag="Dhaf_0110" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.549 at residue 29" gene 114843..115781 /locus_tag="Dhaf_0111" /db_xref="GeneID:7257060" CDS 114843..115781 /locus_tag="Dhaf_0111" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pth:PTH_2381 membrane-fusion protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456616.1" /db_xref="GI:219666181" /db_xref="GeneID:7257060" /translation="MRQGLFRDVSLTRLSSPEQLDQRIQVTSPKAWLALLAIGLILMS GVVWGLLGSIPTKIQGQGILLNNGGVFSLQHHASGQISDIRVKVGQEVRQGDVIARIE QPELVAQIKGLLGSQAAMDKDGQGGEPALAGIEEQIRQLRSELVYQTQVVSEVDGRIL ELNISKGSIVKPGDTLATLEQYGDTVKLEAIVYVPAEQGGLLRPGMECQISPTTVNKE EYGYLLGRVNTVAEYPATAQSMMQTLGNESLVTFLAGQGAPLLVKIDLVPDSATESGY RWSSPLGPPMSFQSGTIITTEIITQREKPIHKVIPF" gene 115807..117990 /locus_tag="Dhaf_0112" /db_xref="GeneID:7257061" CDS 115807..117990 /locus_tag="Dhaf_0112" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: pth:PTH_2380 bacteriocin/lantibiotic ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456617.1" /db_xref="GI:219666182" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005074" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7257061" /translation="MVKKKIVKVPTVLQMEAVECGAASLAMILAYYGKYITLEELRIA CGVSRDGSKASNLLKAARNYGLEAKGYRKEPEALRRMPLPLVIHWNFSHFLVLEGFHK GKAVLNDPAAGRRTVSEEEFNLAFTGIVLSFTPTTEFQKDSRKPGLSLALRRRLKGSE QALIYIILLGLALVIPGLIIPVFSRVFVDDILLGGLHSWVWPLLLGMGITAMLRGVLT WMQQYYLLRLETKIALATSGQFLWHIFRLPSEFFSQRAAGELTSRIQSNDKVAKLLSG KLATTALNVLMIMFYFTLMLTYSWILALVGLAIAFINVGYLIAVSARRVDLNRRLLQD EGKLIGSSMAGLQIIETLKATGSEANFFAQWSGYQAKLLNAEQELGVSSQFLSVFPSF LTGINNALVLVIGGFLILDGQMTIGMLVAFQSLMSSFMTPVTGLVGLGAELQEMTGEM NRLDDVLNYPLGRDQGDQGGRGEQEGLGGTAEPPAGQKLSGYVELRNITFGYSILEPP LIEDFSLSLRPGSRVALVGGSGSGKSTIAKIIAGIHHPWSGEILFDGQPRASFTKEVL SNSLAMVDQEICMLQGTVKENITLWDGTISEFGMIRAARDACIHDEITARPGGYEQMV EEGGKNYSGGQRQRLEIARALAQNPVILIMDEATSALDPITEKNVDEYIRYRGCTCII VAHRLSTIRDCDEIIVLEKGKIIERGTHGSLYERAGTYAKLIATG" gene 118028..120787 /locus_tag="Dhaf_0113" /db_xref="GeneID:7257062" CDS 118028..120787 /locus_tag="Dhaf_0113" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_2379 bacteriocin/lantibiotic ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456618.1" /db_xref="GI:219666183" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7257062" /translation="MSEIDYGEFVKQAGVSIPLDGQEPLFLQEDGSVWLVEQGKVAVF LATMENQLQAGAKIFLFEGRTGDWLFGITPGGSPHKKGLLVSGLPGSRLLRLDIRQLT ELLRDRRETDGGAQRGPQVPAHGEKIYGAVGQWLHTLARISRHGDISQDEVAATAEVV LSEYEYLTNDSLRARYHSQVLQGVSDLWDKKIAAEQKRLEEKGRSDQRLMANAMARLA AITEEVETKVLADQTGDPLLDACRLVGRTMQIGIVAPPEVLGSSKVMLLDEIARASRI RVREVSLHGNWYTQDSGPLLGYMKEDHRPIALIPATPASYCIHDYTLGITRSVDSETA QEIDAFGFVFYRPLAERKITARDLLALGWGNSWRRDFLMILLMGVLGGILGTATPLAT GIIFNTIIPEGERGHLVQIAFFLGASALAAMIFQFVRSLAALRIEGKMEGAIQAAIWD RLLSLPVPFFKQFPAGELAMRAMGISQIRKILSGVTLNTVLSSIFSVFTLVLMFYYDR RLAAAATMLVAVELLIIGFLGYLQVHYERKILEVSNQIAGMMLQLIGSITKFRVAGAE VRVFYRWAERFSEQRQFVFKKRILGNWLTTFHDVFPILAGMIIFYTLIAGHSLLSPGE FIGFNVAFISFMMSMTSLTEALIGAYSVIPLYQRAKPILDTLPEYDETKIAPAPLRGS IAMDHISFRYKVDGPLVLKDVSCRIEEGDYVALVGTSGCGKSTLLRILLGFEKPETGK IYYDGQDLEKVDIRAIRKQLGVVLQNGQLMSGNIFTNIVGANPYLTIDDAWAAVKMVG MEEDIQAMPMGMHTMISEGASTLSGGQRQRLMIARAIVNQPKILFFDEATSALDNRTQ AMVSQSLDRLKVTRIVIAHRLSTIINCSKIIVMDQGRIVESGTYDELMSKGGIFANLV HRQLT" gene 120953..121942 /locus_tag="Dhaf_0114" /db_xref="GeneID:7257063" CDS 120953..121942 /locus_tag="Dhaf_0114" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: cpy:Cphy_3049 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002456619.1" /db_xref="GI:219666184" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7257063" /translation="MTLQPISKVSKAYGVSTRTLRYYEQLGLLQSSKLPGYAYRAYDE EALSRLRQILVLRKLRIPLKQIGVILETRDARLAIEVFEQSITGLQSEKQALETIEGI LRSFVRELEKLLPEPLSPHVFEQEHVMELVQALSVKTLSQKEETSMEELNRASELLEH LKDIRILYLPPMTVASCQSTGDNQEEVVGAAISTFIKESGLGESKPDFRRIGFNNPAS EQSGGSLGYEAWVSIPGDMEVPAPLVKKQFLGGLYAAHMIAFGEFQEWGRLWQWVMDN GEYDVDFSPRTDPADPRADPSLEEQLNAIHHLEDASPFGTQLDLLVPIKPKQG" gene 121953..122777 /locus_tag="Dhaf_0115" /db_xref="GeneID:7257064" CDS 121953..122777 /locus_tag="Dhaf_0115" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: cbh:CLC_1985 nitroreductase family protein" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002456620.1" /db_xref="GI:219666185" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7257064" /translation="MVEFQSRIGKDGRLTVMEIPFDARETFQMPKGTIFVCGTINGIP YRGKLLSRGNGKQVLTIDKTLQKGLGYAGQDFPVNVAMACENQAEMVDEEKEAIPRLH SDMEAITAIAGRASVRKYMDKTVEPQKLEVILRAGLSAPSAKNKRPFHFVVVEDKAVL GAWAAGNSNAKMLSHAPCCIVVCGDGNVEGTRDFLVGGCAAATQNMLIAIHALGLGGV WCGVLRGKEWSRQVAADLYLPVKVEPLAVIALGYPTEQEKAPVPWDMKSHIHYERW" gene complement(122851..123078) /locus_tag="Dhaf_0116" /db_xref="GeneID:7257065" CDS complement(122851..123078) /locus_tag="Dhaf_0116" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: mta:Moth_1793 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002456621.1" /db_xref="GI:219666186" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7257065" /translation="MAVTPLPLKAALVVFFQAGISPSGAPIIKKKTLGNIRFDAAEQD LYDVAHALFSLTDYPVLDVVLRKEYDLVDEG" gene complement(123161..124000) /locus_tag="Dhaf_0117" /db_xref="GeneID:7257066" CDS complement(123161..124000) /locus_tag="Dhaf_0117" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456622.1" /db_xref="GI:219666187" /db_xref="GeneID:7257066" /translation="MHDSTDKRTPLVIAAEINAINQESRRMLLKNAIEVGRRLKEAKE LLNHGEWMKWLKESVSYSKSTAANLMNLYEEYGHLLLNPSDNDSNFQALGNLTYTQAI LLLGLPEEERGEFVTRNDLDTMTTRQLNQAVKELKTPVPAKEQPQSEHETETGAEAGA GAMAESQTQGDIQIKYVSRTVRPRQQSITKTEPAPAASSLVTSYEEKCTACCQTIANT FQELLTALGHLARLDPRTKEKCSQDADQLASYMVDRLKDWPPVAGTNMKGVQTYSTCE WGG" gene complement(124209..125114) /locus_tag="Dhaf_0118" /db_xref="GeneID:7257067" CDS complement(124209..125114) /locus_tag="Dhaf_0118" /inference="protein motif:PFAM:PF05239" /note="PFAM: PRC-barrel domain protein; KEGG: pth:PTH_0111 hypothetical protein" /codon_start=1 /transl_table=11 /product="PRC-barrel domain protein" /protein_id="YP_002456623.1" /db_xref="GI:219666188" /db_xref="InterPro:IPR007903" /db_xref="GeneID:7257067" /translation="MKPSKEFLSLPIVSLSEGQHIGYVKSLVIDAQAKALAALVIDPK GFFRDQRIIPYAKVVSVGADAITIDKGAYVEKSASLPEILSLIKEKLTIIGTRVITQS GKTLGVVEEYYVDPDTGKITQMEISGGKIEGFFSGKAILEADYVVTIGQDVIVAQKGC ETSLMIADKGINDTFKSVLRSTSNLASGTGQAFGKIFSKKDKDKTKHAAKGKVKGKGK GTAEDSASPIPIIEGENMAPLQDPPAAEDENILSSANNQPIEAVIIKDSSPEVPEISP AEQPAETGPELSQVAEAPSTKEPLG" gene 125213..125770 /locus_tag="Dhaf_0119" /db_xref="GeneID:7257068" CDS 125213..125770 /locus_tag="Dhaf_0119" /EC_number="3.1.1.29" /inference="protein motif:PRIAM:3.1.1.29" /note="Enables the recycling of peptidyl-tRNAs produced at termination of translation" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="YP_002456624.1" /db_xref="GI:219666189" /db_xref="InterPro:IPR001328" /db_xref="GeneID:7257068" /translation="MKLIAGLGNPGGQYAETRHNAGFLLLDCLAEELKLDFRPKFQGL VAETMMGGEKVYLLKPQTFMNLSGRSIRELAQFYKIAPKDIMVVYDDMDLPIGRLRLR SSGSAGGHNGIKSTIAELGTEDFWRLKVGIGRPTAGWDSARYVLASFTKEELPVLEEI LDKGIKAVTLWAKEGGDKAMNLYNR" gene 125833..126408 /locus_tag="Dhaf_0120" /db_xref="GeneID:7257069" CDS 125833..126408 /locus_tag="Dhaf_0120" /inference="protein motif:PFAM:PF05685" /note="PFAM: protein of unknown function DUF820; KEGG: tex:Teth514_0998 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF820" /protein_id="YP_002456625.1" /db_xref="GI:219666190" /db_xref="InterPro:IPR008538" /db_xref="GeneID:7257069" /translation="MPLPQERGNFTYADYLSWPQHERWEIIDGVAYMQAAPSSVHQEI LTGLLVQFHQYLAGKAGKVYPAPFCVRLIENDEKNDEEIIKVVEPDITVVCDKSKVDE KGCCGVPDLIVEIISPTSTEMDKLVKFNKYEKAGVREYWIVEPEGRFVSVFVLREQKY GRPEIYAENDKIKVAIFPDLLIDLKPVFEGI" gene 126639..127649 /locus_tag="Dhaf_0121" /db_xref="GeneID:7257070" CDS 126639..127649 /locus_tag="Dhaf_0121" /inference="protein motif:COG:COG0226" /note="KEGG: cpy:Cphy_1068 ABC-type phosphate transport system periplasmic component-like protein" /codon_start=1 /transl_table=11 /product="ABC-type phosphate transport system periplasmic component-like protein" /protein_id="YP_002456626.1" /db_xref="GI:219666191" /db_xref="GeneID:7257070" /translation="MKRRFLILIVITAMLLSGCTHQEKAVSAPPAPTQEVKPDNVYNT MSETAAHYGITHENYPRIDGSTSTQGIAMAINQAMYRYLENENLPMEVSKTVPSYKRL IAGEVELILVPYPSAAVLALAQESGVELEFHPVAAEALIFITPAENPADNITGDQVRT IYLDYGIRSWSELGGSDKELIPICRNADSGSQSQLDNLVLHDQPMHPGIQKNYVELTM EGMLELVAFYHHGGLDGKPTDSYALGYTLYTYLQNMNEVTEIGSRLKILSFEGVEPTE ENIAKGSYSLADGYYAVVRKDLPAAHSARGILKWLQSDEAAAAIKARGFIPKQDRTKL SW" sig_peptide 126639..126707 /locus_tag="Dhaf_0121" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.532 at residue 23" gene 127716..127943 /locus_tag="Dhaf_0122" /db_xref="GeneID:7257071" CDS 127716..127943 /locus_tag="Dhaf_0122" /inference="similar to AA sequence:KEGG:CHY_1721" /note="KEGG: chy:CHY_1721 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002456627.1" /db_xref="GI:219666192" /db_xref="GeneID:7257071" /translation="MFITATELKENMGKYLTLASKEEIIIMRNGKAVAKLSKVEDNKI EVAKSLFGILPKEASLELAREERLKKHESTD" gene 127927..128352 /locus_tag="Dhaf_0123" /db_xref="GeneID:7257072" CDS 127927..128352 /locus_tag="Dhaf_0123" /inference="protein motif:PFAM:PF01850" /note="PFAM: PilT protein domain protein; KEGG: chy:CHY_1722 PilT domain-containing protein" /codon_start=1 /transl_table=11 /product="PilT protein domain protein" /protein_id="YP_002456628.1" /db_xref="GI:219666193" /db_xref="InterPro:IPR002716" /db_xref="GeneID:7257072" /translation="MRVLIDTNVILDAVIRRVPYNNPAERLFLLIAEDRLKAYITASS VTDIYYLLHRHFRDAGEAKQVLAKLFVLFEVLEVTQSDCERALSLAMNDYEDALLATC AKRKKLDMIVTRNLPYFKDSPVKAIAPDEFIAHYFDEEG" gene complement(128451..129677) /locus_tag="Dhaf_0124" /db_xref="GeneID:7257073" CDS complement(128451..129677) /locus_tag="Dhaf_0124" /inference="similar to AA sequence:KEGG:CBUD_0818" /note="KEGG: cbd:CBUD_0818 putative GTP-binding protein" /codon_start=1 /transl_table=11 /product="putative GTP-binding protein" /protein_id="YP_002456629.1" /db_xref="GI:219666194" /db_xref="GeneID:7257073" /translation="MAYIKRTIETTIENAAKMFSTVLITGARQVGKTTVLKHITEDIS YLTLDDPILLLNAFEEAGSFFKSTPPPVIIDEIQYAPNLFPYIKMIADENGKRGQFYL TGSQQFKMMKNVSESLAGRIGIINLLGLSLREIKGDADFNKAFIPTESYLETRRLSAK ELNYKEIWKIIYKGSMPAMYADELDWQLFYGSYTKTYLERDVRELTQVGDELKFIKFM TAMASRTSQMLNLTSIANEVGISVPTADRWLSILVSSNIVYLLKPYYNNIMKRAVKTP KLYFLDTGLAAYLTKWNSPDVIEAGAMSGAFFETFVLAEILKGYYNAGILEPALYYYR DKDAKEIDIILEENGTLYPIEIKKTANPSKEHIANFSVLDRLKDMKIGTGCVICMYDK VIHINDNNVSIPVTWL" gene 130048..131349 /locus_tag="Dhaf_0125" /db_xref="GeneID:7257074" CDS 130048..131349 /locus_tag="Dhaf_0125" /inference="similar to AA sequence:KEGG:BVU_0720" /note="KEGG: bvu:BVU_0720 putative ATPase" /codon_start=1 /transl_table=11 /product="putative ATPase" /protein_id="YP_002456630.1" /db_xref="GI:219666195" /db_xref="GeneID:7257074" /translation="MICLRRKLEEKLVQWKDRSEGRMPLLLYGARQVGKTYLLAELGE KHFANTVYINLETNPAVAGYFADDITPERLIRFLETTVNQEIIPGKTLIIFDEIQSCE RALTSLKYFCESAPEYHVAAAGSLLGVAINREHYSFPVGKVESMTLFPLDFEEFLWAM GEERLAQEIRRCFSLLEPMAEVLHQKAIELYRYYLIVGGMPACVELFKRTGKLVLIPT SQNEILNNYVADMAKYAGAADTVKIRACFNSIPAQLAKENKKFQYKVVQKGGSASLFG VSIDWLTQAGIVLKCQKLEQAMNPIAVYVDLSSFKLYMSDVGLLVMKSGLPQQSVLTG EANLFMGSVAENYVAQALAANGHSLYYWTSEHTAELDFVLQKGRDIIGIEVKKGTKVK SKSINVFSQRYHSAYCIRFSEKNFGKTDNLWSVPLYGAFCV" gene complement(131439..132116) /locus_tag="Dhaf_0126" /db_xref="GeneID:7257075" CDS complement(131439..132116) /locus_tag="Dhaf_0126" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002456631.1" /db_xref="GI:219666196" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7257075" /translation="MDTTEQKDLLEIRQFMYSFLSAVFLYPPQAEQVTMILQRQLFKE FPLDIADEQYQEALANLVRWTNENCASDLVNVTSSLNKDYTALFIGPGHLAAPPWESV YRTEERLTFGEPTLEVREWYQRCGLEFVHKNSEPDDHFGLELEFMSKLIASELEAWEE DDVIKAEGLAREQPAFLDEHLLRWAKEFTQDVQASAQTLYYQGLAQLAYSYLIWDGKQ LRDGKNT" gene 132342..134741 /locus_tag="Dhaf_0127" /db_xref="GeneID:7257076" CDS 132342..134741 /locus_tag="Dhaf_0127" /inference="protein motif:TFAM:TIGR02166" /note="TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; anaerobic dimethyl sulfoxide reductase A subunit DmsA/YnfE; KEGG: mta:Moth_1386 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family" /protein_id="YP_002456632.1" /db_xref="GI:219666197" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR011888" /db_xref="GeneID:7257076" /translation="MSKQPELQNKTKISRRAFVKWSAAATATAAIAPSLVGCSTQTQA SGEPAVVQAGQRLAGAEEKPSICWHNCGGRCQLKAYVKDGVVVRFGTDNVGPDTPEDL QARACLKGRTQRQRLYHPDRLKYPMKRVGERGSGEWARISWEEAFDTTAKELRRIIDQ YGNESVYFNYACGAYGLLNQTNSNNSLRRLLNIMGGYLQSYGNYSQANYMYAVPYMFG NPYSGSSPTTFPDAKLIVMFGDNPACTRVGGFNSTYYLKLAKQNGARIIVIDPRHSDT VSTFADQWIPIRPTTDSALVAGMAYVMISEGLHDQAFLDKYCLGFDEEHMPEGIPAGN SYKSYILGESDGKPKTPEWASEITGIPVETIKQLARDIAGTKPGFILQGRGIQRHGNG EFQSLAVPVLSFMTGNVGILGSNPGLYEGGPSVKTGNYPIGTNPIKTKISIFMWTDAI ERILTKEQDRIEGADKTKSTIKMIINYGGNTLINQHSDSGRTAALLKDDSKCEFILGM DNFMTPSMRYCDIVLPGVTQFEVNDMITRSMGHGVAYYGQKLVEPMFECKTINEVGRA LAERLGVLAQFDDGKSEEDYLREFVGVSQASHPDFPSYEEFREKGIYKTKATKVVAYE KFIKDPEANPLTTPSGKFEIFSKDLYDIQNPQIPAIPKYMPAEEGPEDPLKEKYPLQC IGHHTKRRVHSTFDNMPWLEEAEAQMLWLNPQDAAARGIKDHDLIKVYNDRGTVKVKV KVTPRLIPGVCSLPQGAWYTPDQSGVDVRGCINTLTKWTPNPLSKGNPQHTNLVQIEK A" sig_peptide 132342..132476 /locus_tag="Dhaf_0127" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.850 at residue 45" gene 134755..135327 /locus_tag="Dhaf_0128" /db_xref="GeneID:7257077" CDS 134755..135327 /locus_tag="Dhaf_0128" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1385 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002456633.1" /db_xref="GI:219666198" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257077" /translation="MAKQYGFYMDQSNCIGCFTCQIACKDKNDLEVGQCWREVHEFQG GDTILEGGVYRSNVFAYWLSMSCNHCQEPKCVQNCPAGAMYKREEDGIVLVDQNKCLG CGYCTWSCPYGAPKLAGKTVSKCNFCIDLLEQGKNPACVDACIMRVIEFGPIDELRAK YGNVDEVKGLPSAQITKPCIVISPHKKAIE" gene 135342..136160 /locus_tag="Dhaf_0129" /db_xref="GeneID:7257078" CDS 135342..136160 /locus_tag="Dhaf_0129" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002456634.1" /db_xref="GI:219666199" /db_xref="InterPro:IPR000595" /db_xref="GeneID:7257078" /translation="MHELPLLTFTLCLQAAVGAVLWAVVFRIKAQDAPLFKRNTLAAL ILAAVGIVASLLHLGKPMLALTSMFNLATSWLSREIFFSGAFFGLLLIFWWVERREKA PGARTALGVITAGVGLIDIYAMARLYMESIMPAWQNANTLISFYATAIVLGGIVFYVT AGEQREKLPRIDLMLWAVVLVQAAFALGYVASLGALTGAGKETAALLAGSQATLILSW LFTLGGVFLLSLSRTGKLAKQTSFLYLAMAVIVVGEIAGRYLFYVSGIPIGLGL" sig_peptide 135342..135413 /locus_tag="Dhaf_0129" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.633) with cleavage site probability 0.284 at residue 24" gene 136230..136406 /locus_tag="Dhaf_0130" /db_xref="GeneID:7257079" CDS 136230..136406 /locus_tag="Dhaf_0130" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456635.1" /db_xref="GI:219666200" /db_xref="GeneID:7257079" /translation="MLVMRVCQVCDQVLGEMELDDLTSERPDSIINIIGNVAYALCPD CMNELEVGEYRRLN" gene 136541..140134 /locus_tag="Dhaf_0131" /db_xref="GeneID:7257080" CDS 136541..140134 /locus_tag="Dhaf_0131" /inference="protein motif:TFAM:TIGR00580" /note="KEGG: drm:Dred_0111 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="YP_002456636.1" /db_xref="GI:219666201" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR003711" /db_xref="InterPro:IPR004576" /db_xref="InterPro:IPR005118" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7257080" /translation="MGVLLADVHGFVLPERKDFLKTLSHYLRLGFDIEAVDKAISYKE WPQMIYNLTGSQKPAFAAQLIQKGKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPS SEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVVPALAVNQRSFSRRRWQEYILEL KEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAPLDGEPLRVEFFDDEV DSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVRAQARKQAGRLNRSGR SDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLEEPLEPFFSLLSQDHYVILDEPLR LKEQLEFQQKERLEEYTQALAKGEEFYSPEDQFVSYEQFLRYGEKHPFVLISTLPREI PGVAPKRIFNLNARPLTGFMGKTGILVDEIEHWQKSGHIVNLFVGDEEHAERMLQGLR DRGALAKKHELHEPVQEGGVYVYSSSLDQGFELPLSKLIVLSEAEIYKRERKAAVKRK KAPEKTGQRLQFADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQDKLY VPLDQLNFLQKYLGSDAETLPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREA TKGYAFSPDNVWQQEFEEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKT EVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQK LILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDV LTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRG GQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVC TTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEV AEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAV QELKGEQVEEKIETSIEVQVDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSMMIDEL IDRFGTPPREVENLLKIVRIKWMASGMKIEQIQQLKQQMVFRFAADPGISGEMLMTMA TQSPYPVSFGTTGNGNLEIKVRLRSVVQEELLEAIHKVLMVFNGIASKTAS" gene 140173..141120 /locus_tag="Dhaf_0132" /db_xref="GeneID:7257081" CDS 140173..141120 /locus_tag="Dhaf_0132" /inference="protein motif:PFAM:PF00639" /note="PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hmo:HM1_0720 peptidyl-prolyl cis-trans isomerase domain-containing protein" /codon_start=1 /transl_table=11 /product="PpiC-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_002456637.1" /db_xref="GI:219666202" /db_xref="InterPro:IPR000297" /db_xref="GeneID:7257081" /translation="MRSFRKGIIAALVLTLALTGCSSAGGDQWAAKVNGETITEQDFA ARVSNVQKAYEGMGMDFSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVNDPS ILEQEKNIIQMVGDESQYQEWLKQQAMTEDEVKNYFALSAEITKDVTVTPEQEKTFFE NNQELYGGKGEEVQARHILVETEDEAKAIIAQLDGGADFSELAKEKSTDTGSQSSGGY LGSFGKGKMVPEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVKSQ VAEDALADAKAQKFGGYFDELREKAKANIEYSEKYKPAA" sig_peptide 140173..140247 /locus_tag="Dhaf_0132" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.574 at residue 25" gene 141445..141987 /locus_tag="Dhaf_0133" /db_xref="GeneID:7257082" CDS 141445..141987 /locus_tag="Dhaf_0133" /inference="protein motif:TFAM:TIGR02851" /note="TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: pth:PTH_0119 regulators of stationary/sporulation gene expression" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AbrB family" /protein_id="YP_002456638.1" /db_xref="GI:219666203" /db_xref="InterPro:IPR006339" /db_xref="InterPro:IPR007159" /db_xref="InterPro:IPR014213" /db_xref="GeneID:7257082" /translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDREGEV ILKKYSPIGELGDFAKEYADSLYEATGHIACIADRDVIIAVSGASKKEYLNKPIWSSI EQAMAERKTVQLKAGEGKPDEDEEHVKLTSQVAAPIIAEGDPIGAVILMSKDPNVKMG DLELKLVETAAGFLAKQMEQ" gene 142114..143595 /locus_tag="Dhaf_0134" /db_xref="GeneID:7257083" CDS 142114..143595 /locus_tag="Dhaf_0134" /inference="protein motif:TFAM:TIGR00444" /note="TIGRFAM: MazG family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: bcz:BCZK0051 fused tetrapyrrole methylase domain/nucleotide pyrophosphohydrolase domain-containing protein" /codon_start=1 /transl_table=11 /product="MazG family protein" /protein_id="YP_002456639.1" /db_xref="GI:219666204" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR004518" /db_xref="InterPro:IPR011551" /db_xref="GeneID:7257083" /translation="MSNILHVVGLGPAGLESMTLGDYRMIKEAGRVFLRTVNHPCAQD LLAEGLQAESFDYLYERENSFERIYEEIVSRLEKECELYPEVVYGVPGHPTVAERSVV LLVDKLSERFQVKVHPAVSFLDPLFAAIPLDPVEGFLLRNYDALKGSGITGKEWLIIP QVYDGFIASEVKLDLMDIYPDEVELYVVQALGTKMQKVWQCPLYQLDHQTFDHLTTVV VPPCGEGISMTKLLEVMSTLRGRGGCPWDAEQTHDSLKPYLIEESYEVLEAIEAQDMY NLAEELGDLLLQVVFHAQVAQEAGEFQFQDVLKGIIDKMIRRHPHVFGDVRVQNSAEV LSNWDQIKKEEKGEKAEEELFSFPKGLPALMLAVKTQKKVAKFGFDWPDLKGPLAKVY EELKELEEAMAEQKGIQEEFGDILFALVNLSRFIKCDPEDSLRQTIRKFQLRFLEMAK LAGQAGEGLGDLNLEKMDYYWEIAKSKEKNKEIGNNPEIKAGV" gene 143653..143928 /locus_tag="Dhaf_0135" /db_xref="GeneID:7257084" CDS 143653..143928 /locus_tag="Dhaf_0135" /inference="protein motif:PFAM:PF00216" /note="PFAM: histone family protein DNA-binding protein; KEGG: tpd:Teth39_0249 histone family protein DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone family protein DNA-binding protein" /protein_id="YP_002456640.1" /db_xref="GI:219666205" /db_xref="InterPro:IPR000119" /db_xref="GeneID:7257084" /translation="MNKADLVAAVAEKAEVSKKDAEKAVNAVFASIEEALAKNEKVQL VGFGTFEVKDRAERTGRNPQTKEAIVIPASKVPGFKAGKALKDAVQQ" gene 144016..144288 /locus_tag="Dhaf_0136" /db_xref="GeneID:7257085" CDS 144016..144288 /locus_tag="Dhaf_0136" /inference="protein motif:PFAM:PF01479" /note="PFAM: RNA-binding S4 domain protein; KEGG: ckl:CKL_0158 hypothetical protein" /codon_start=1 /transl_table=11 /product="RNA-binding S4 domain protein" /protein_id="YP_002456641.1" /db_xref="GI:219666206" /db_xref="InterPro:IPR002942" /db_xref="GeneID:7257085" /translation="MRIDKYLKVSRLIKRRTVAKDICEGEKIRLNGRIAKPSAEVKPG DIVTLEMARHLLEVRVLSTPNSAKANEAHLLYEVLKDEKRGGQEEI" gene complement(144488..145713) /locus_tag="Dhaf_0137" /pseudo /db_xref="GeneID:7257086" gene 146743..147012 /locus_tag="Dhaf_0138" /db_xref="GeneID:7257087" CDS 146743..147012 /locus_tag="Dhaf_0138" /inference="protein motif:TFAM:TIGR02892" /note="TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: bcl:ABC0096 hypothetical protein" /codon_start=1 /transl_table=11 /product="sporulation protein YabP" /protein_id="YP_002456642.1" /db_xref="GI:219666207" /db_xref="InterPro:IPR012504" /db_xref="GeneID:7257087" /translation="MEKNPSNHRLAMDNRQFLSLTGVSKVQSFDPKEILLETIQGVLS IKGEKLGIKHLDLKAGQVEVEGLIDALVYPRNSGSRQNVWAKIFR" gene 147179..147577 /locus_tag="Dhaf_0139" /db_xref="GeneID:7257088" CDS 147179..147577 /locus_tag="Dhaf_0139" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_2633 spore cortex biosynthesis protein YabQ" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456643.1" /db_xref="GI:219666208" /db_xref="GeneID:7257088" /translation="MTVVGDLIFSAVALFLLFKFFLKANHLDLRFYIVWGSVLGLFLY TRILSRITLWLFFKCYRFIEACLGLILLVLKFPFKVLAVLMRPPYAVLRWFSLLVFRI AEAFLGKPLTKTRKTMISFWERLFPPRTNG" gene 147786..148025 /locus_tag="Dhaf_0140" /db_xref="GeneID:7257089" CDS 147786..148025 /locus_tag="Dhaf_0140" /inference="protein motif:PFAM:PF08281" /note="PFAM: Sigma-70 region 4 type 2; KEGG: drm:Dred_0120 ECF subfamily RNA polymerase sigma-24 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002456644.1" /db_xref="GI:219666209" /db_xref="InterPro:IPR013249" /db_xref="GeneID:7257089" /translation="MHLEIRGLEKLSFRERQAVILKESGKSQEQIAKKLHLSPSSVAT LLNRAKGKGYEIVCIIPEAELGLGGFDLDEEESDN" gene 148000..148320 /locus_tag="Dhaf_0141" /db_xref="GeneID:7257090" CDS 148000..148320 /locus_tag="Dhaf_0141" /inference="protein motif:PFAM:PF04977" /note="PFAM: Septum formation initiator; KEGG: drm:Dred_0121 septum formation initiator" /codon_start=1 /transl_table=11 /product="Septum formation initiator" /protein_id="YP_002456645.1" /db_xref="GI:219666210" /db_xref="InterPro:IPR007060" /db_xref="GeneID:7257090" /translation="MTKKSPTTKESRPKTRKQPFRPLSTLVVLFAFCALVSSAYQLYE LRKEVNQSIAQLNQEKEDLLQQQKLLEEEILQLNTPSYIEQLAREQLGLVRKGEIRIA PKTE" sig_peptide 148000..148119 /locus_tag="Dhaf_0141" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 40" gene 148443..148829 /locus_tag="Dhaf_0142" /db_xref="GeneID:7257091" CDS 148443..148829 /locus_tag="Dhaf_0142" /inference="protein motif:PFAM:PF00575" /note="PFAM: RNA binding S1 domain protein; KEGG: mta:Moth_0092 RNA binding S1" /codon_start=1 /transl_table=11 /product="RNA binding S1 domain protein" /protein_id="YP_002456646.1" /db_xref="GI:219666211" /db_xref="InterPro:IPR003029" /db_xref="GeneID:7257091" /translation="MAIAVGTIVEGVVTGITNFGAFVELPEKVTGLVHISEVADAYVK DVRDYLKEQDRVKVKVIHVDEKGKIGLSIKQANPSPKNTTRERRQPTVSFEDKLAKFI KDSDERQLEFRRATESKRGGRGSSRY" gene 149100..151193 /locus_tag="Dhaf_0143" /db_xref="GeneID:7257092" CDS 149100..151193 /locus_tag="Dhaf_0143" /EC_number="3.1.3.16" /inference="protein motif:PRIAM:3.1.3.16" /note="KEGG: drm:Dred_0124 phosphoprotein phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein" /codon_start=1 /transl_table=11 /product="protein serine/threonine phosphatase" /protein_id="YP_002456647.1" /db_xref="GI:219666212" /db_xref="InterPro:IPR001932" /db_xref="InterPro:IPR010822" /db_xref="GeneID:7257092" /translation="MAEWATLKTKQGLRKEKLTLEGHFWPFLLGLLIARGSILGLYPF GIAFGAALMLHGRKGTMMGLLGVTAGVSSLFLKDLASGLQILLTLLILSLFVPRLRGN KRESLYLGISTALVTGCVALAVLSFGQFEVSLGMKAAVLGILNGGLAVVFRFALRYQD AVWRGNFTREQGMAWLLILIGVLSGLHGVMFKEINFSVVVLSFFILFIAQRFGAGAAA GVGAMLGFLPQLEFNPQNLMAAGIYGLAGFGTGAFQKLGKLGLGVAFMSITLMFTVYL QPEVLYSQLLSSGIGLLLFSLFPSTTSQHDFLKDKPMPEVESTVTKVKTVAEIFDQIA YSAQAAEAEVGKSKPEIPELMNVLVERVCKNCPTLDTCWTREFYRTYHLLFNLFEWVE REEEKVNVQNLPVEWKRHCGKLKEMLLGVQFIMEHEKSIESWRSRLTANQEALARQFQ SVSQVIGHLAKELNARHNVEQVKPASLARRRKQFLDVGVASFTKKGNSISGDNYASLA FAPTQHAFIVSDGMGVGEGAAKMSSTALNLLEQLLTTGFEPESAIQALNSILVLRSPE ESFVTLDIGILDCESDDLKLIKVGACPSYIVREDKVHMFQSSSLPVGILNHVEIPVIE EKLRPDEYLVLVTDGIQDILKDGKDWLKKFLDRQHPQTAQELAEAIVQEARAMSGNDL ADDGIVLVVKKNIFH" gene 151216..152634 /locus_tag="Dhaf_0144" /db_xref="GeneID:7257093" CDS 151216..152634 /locus_tag="Dhaf_0144" /inference="protein motif:TFAM:TIGR02432" /note="TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: pth:PTH_0197 ATPase" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthetase" /protein_id="YP_002456648.1" /db_xref="GI:219666213" /db_xref="InterPro:IPR011063" /db_xref="InterPro:IPR012795" /db_xref="InterPro:IPR012796" /db_xref="GeneID:7257093" /translation="MYEKLKQQVLPQLIAPGSRILAAVSGGPDSVALAHILWRYIQDK QEQKITLVITHVHHGVREESDDEEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQT AAREWRYACWQEDMRKENCTLLATAHHLGDQAETVLYRLLRGSGTAGLAGIYPQKGKL IRPLLTVTKEDILEYCRNEKLPYALDHSNEEPIYVRNKIRLQLLPELQREYNPKIIEA LGRTAEVLRWDEEYLEEEVQSAWKRWAILDTEQRVGLRRTIFELPKAILSRLIRRAAT LVSGEPRGIAFQYVEQVMASQGQVGWSQDLPGLNIGIDYQGVWFQRADWGQSINESPD ILLPSLPVGAHWGEWLPWRDEAGVNWLVGLFCLEKEAEDNDYPGQCVDKVFFDGPGLI RNSEKLQWRYRQEGDCLWIAGLGHKSLKKVFQDAKVPAKHRPVIPLLAMGNEILWIPG VKRGDRYPIEQGKGAVGVLIKC" gene 152777..154750 /locus_tag="Dhaf_0145" /db_xref="GeneID:7257094" CDS 152777..154750 /locus_tag="Dhaf_0145" /EC_number="3.6.4.3" /inference="protein motif:TFAM:TIGR01241" /note="KEGG: mta:Moth_0105 FtsH-2 peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ATP-dependent metalloprotease FtsH" /protein_id="YP_002456649.1" /db_xref="GI:219666214" /db_xref="InterPro:IPR000642" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR003960" /db_xref="InterPro:IPR005936" /db_xref="InterPro:IPR011546" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7257094" /translation="MKFFKNAAVYLLIILIAIMLIRFANPPATQPLDMDYTKFYEAVV TGQVEEVVISTDDNVNTYEVKTKDGQQYVVLGEAKDVDLSAQMNEHKVNVRVNPPVTT PWWAGLITTVLPFLLIGGFIFFMMQQSQGGGNRVMQFGKSRAKLVTDEKKKVTFADVA GADEVKEELEEVVEFLKFPKKFNELGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPF FSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDER EQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPALLRPGRFDRQVVVDVPDVKGREE ILKVHVKGKPMHNDVELDVLARRTPGFTGADLANLVNEAALLSARRNEKEIKMNALED SVERVIAGPEKKARVISDYEKKLVSYHEAGHALVGEMLTHTDPLHKVSIIPRGRAGGY TLLLPKEDRNYMTKSHLLDQVTMLLGGRVAEALVLHEISTGASNDLERATGLVRKMIT ELGMSEELGPLTFGQKEGQVFLGRDIARDRNYSEAVAYSIDKEARRMIDECYLKAQTI IQENMHKLNAIAQTLMEKETIEAKEFAELMARFDQPVETAQVSEPSETENNTTEHDDL LPATGETSVEGEDRTEAEGLSGSTLEEEKNKID" sig_peptide 152777..152851 /locus_tag="Dhaf_0145" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.995 at residue 25" gene 154762..155211 /gene="ndk" /locus_tag="Dhaf_0146" /db_xref="GeneID:7257095" CDS 154762..155211 /gene="ndk" /locus_tag="Dhaf_0146" /EC_number="2.7.4.6" /inference="protein motif:PRIAM:2.7.4.6" /note="catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate" /codon_start=1 /transl_table=11 /product="nucleoside diphosphate kinase" /protein_id="YP_002456650.1" /db_xref="GI:219666215" /db_xref="InterPro:IPR001564" /db_xref="GeneID:7257095" /translation="MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQAL AEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIR GSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE" gene 155298..156008 /locus_tag="Dhaf_0147" /db_xref="GeneID:7257096" CDS 155298..156008 /locus_tag="Dhaf_0147" /inference="protein motif:PFAM:PF05949" /note="PFAM: protein of unknown function DUF881; KEGG: hmo:HM1_2375 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF881" /protein_id="YP_002456651.1" /db_xref="GI:219666216" /db_xref="InterPro:IPR010273" /db_xref="GeneID:7257096" /translation="MNLPKNGKMMLTVASLILGILFISLLKTTGAAGSTARTDTTLAS LIQIGQENEQLKNDISKLKEDLSKFQAGQNASKVVLEQLDTAKRNAGLTKVTGPGLRI TLDDAQDRDINNEDIQYYVIHEEYIRTIVNLLWHGGAEAVAVNGQRITGNTEIFCSGA FIQIGQTRQMPPYVIEAVGDVNYLQSSLNFYFWDRLGEYQEQYGITRKLEVPTEPLVI PAGKAQQFRYSEPMKEAK" sig_peptide 155298..155393 /locus_tag="Dhaf_0147" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.339 at residue 32" gene 156008..156700 /locus_tag="Dhaf_0148" /db_xref="GeneID:7257097" CDS 156008..156700 /locus_tag="Dhaf_0148" /inference="protein motif:PFAM:PF05949" /note="PFAM: protein of unknown function DUF881; KEGG: hmo:HM1_2376 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF881" /protein_id="YP_002456652.1" /db_xref="GI:219666217" /db_xref="InterPro:IPR010273" /db_xref="GeneID:7257097" /translation="MKKRTLAIPLTLVALVLGFLLTLQMQTQKSVLELEKIQAQRAAS ARDFLAEAQEENKLLKEQHTALTAQLEEARTQGGTSPALLAELDRYRMMEGTVNVQGP GIVITIDDRQQEHKVVLPMSNEDLLEIINTLKFAGAEAISVNGQRVVASSAIVLSGTS TKLINQVPITRTEGVPYEILAIGNQDQLLDYFTQLKAQRLKQLGMSVSVSRKTVQIPS YKGVSPVKSPES" sig_peptide 156008..156082 /locus_tag="Dhaf_0148" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.403 at residue 25" gene 156883..158553 /locus_tag="Dhaf_0149" /db_xref="GeneID:7257098" CDS 156883..158553 /locus_tag="Dhaf_0149" /EC_number="6.3.4.3" /inference="protein motif:PRIAM:6.3.4.3" /note="catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate" /codon_start=1 /transl_table=11 /product="formate--tetrahydrofolate ligase" /protein_id="YP_002456653.1" /db_xref="GI:219666218" /db_xref="InterPro:IPR000559" /db_xref="GeneID:7257098" /translation="MKTDIEIAQEATMKPITEIAQGLDLLEDEIELYGKYKAKVNFSA WERLKDKPDAKLILVTAINPTPAGEGKTTTTVGLGQAMSKIGKNAMIALREPSLGPCF GVKGGAAGGGYAQVVPMEDINLHFTGDFHAITSTHNLLAALLDNHIQQGNLLNIDPRQ IVFRRVMDMNDRALRKIVIGLGGRTEGIPRENGFDITVASEIMAILCLAKDLMDLKER FGRIVVAYTYDGKAITAHDLEAEGAMALLMKDAIKPNLVQTLENTPVFIHGGPFANIA HGCNSVVATRMAMKLADYVITEAGFGADLGAEKFYDLKCRFAELKPAATVIVATVRAL KMNGGVAKEDLGPENLEALAKGIVNLEKHIENIGKFGVPAVVAINRFPTDTDAELEFV AERCRQLGAEFALSEVFTKGGEGGIELAKAVLNIVDNKESNFHVLYELDLPIAKKIET ICKEVYGADGVNFTKEALTSMKKYEELGYGQLPICMAKTQYSLTDDQNVLGRPSGFTI TVRELRLSAGAGFLVAITGAIMTMPGLPKRPAALRMDIDAAGRITGLF" gene 158710..159264 /locus_tag="Dhaf_0150" /db_xref="GeneID:7257099" CDS 158710..159264 /locus_tag="Dhaf_0150" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cpf:CPF_1275 HDIG domain-containing protein" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002456654.1" /db_xref="GI:219666219" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7257099" /translation="MIPMPRVNRILQHRNYEEFTEKNKQAEQKRIYCRHGSDHGLAVA RIAYLYLLEKYIEDRDSLPGTGTNKASVRLEESYGLGKESIYAAGILHDIGRWVEYEN QEDHALAGARLARPILKDCGFTEAEMEKIVLGISEHRLPPDQTSSILGQALALADDWA RDCQSCSSKATCYKYTKAMEDILI" gene 159296..160519 /locus_tag="Dhaf_0151" /db_xref="GeneID:7257100" CDS 159296..160519 /locus_tag="Dhaf_0151" /EC_number="2.5.1.15" /inference="protein motif:TFAM:TIGR01496" /note="KEGG: mta:Moth_0110 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="YP_002456655.1" /db_xref="GI:219666220" /db_xref="InterPro:IPR000489" /db_xref="InterPro:IPR006390" /db_xref="GeneID:7257100" /translation="MKDYSPRWISLNNETEAKKAMQQIGSDPGGIAHMVGKPIGRALK LENVPLPAAHIIKQEMLSLGGDAAVHRNVIVNKIEASDILLVGTAKHFRRLSQKLAAQ PFGLKDLGKSLKGLLDALEPPKQRVLPCRGKDIVLGERTLIMGILNLTPDSFSDGGKF NTLERALKQAEALVEQGADILDIGAESTRINHEPVSAEEEWERLEAVLKALLPRIAVP ISVDTYKADVAERALAAGVHMINDVWGLQKDPRMAEVVGRAQAPVIVMHNQEGSNYHH LMGDIMAYLKKSIHLAEEQGLAGDQIIIDPGIGGTAFGKSLDIDLEIMSRLEEFRSLG RPILLGTSRKSMIGQTLNLPTEERLEGTLATSVVGVAAGVDILRVHDVQANKRAVQMA DAIYRRKRGENFSGS" gene 160509..160877 /locus_tag="Dhaf_0152" /db_xref="GeneID:7257101" CDS 160509..160877 /locus_tag="Dhaf_0152" /inference="protein motif:TFAM:TIGR00525" /note="TIGRFAM: dihydroneopterin aldolase; KEGG: amt:Amet_2162 dihydroneopterin aldolase" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="YP_002456656.1" /db_xref="GI:219666221" /db_xref="InterPro:IPR006156" /db_xref="InterPro:IPR006157" /db_xref="GeneID:7257101" /translation="MDRDRIALRGLKFFAYHGMLREEKILGQTFIVDIDLYADLSKAG KSDQVEDTINYAEVYARIKTIVKREKYQLIERLAERIAEDVLGEFPCEGVRVVIHKPQ APIPGIFDEAFVEIYREKKR" gene 160874..161347 /locus_tag="Dhaf_0153" /db_xref="GeneID:7257102" CDS 160874..161347 /locus_tag="Dhaf_0153" /EC_number="2.7.6.3" /inference="protein motif:TFAM:TIGR01498" /note="KEGG: bha:BH0095 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase" /protein_id="YP_002456657.1" /db_xref="GI:219666222" /db_xref="InterPro:IPR000550" /db_xref="GeneID:7257102" /translation="MKAYLSIGSNLGDRGHYLQQSCQRLAEHPDVKIIKKSGTYETKP WGNVDQPDFWNQVLEIETSLAPLDLLNLCQEVEKSLGRERLIRWGPRTIDIDLLNYDN KVWEDERLILPHPRMEEREFVLAPLREIAPHYILPSGKKVTEVCGDGEVWRLESK" gene 161578..162456 /locus_tag="Dhaf_0154" /db_xref="GeneID:7257103" CDS 161578..162456 /locus_tag="Dhaf_0154" /inference="protein motif:PFAM:PF01210" /note="PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: drm:Dred_0159 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="NAD-dependent glycerol-3-phosphate dehydrogenase domain protein" /protein_id="YP_002456658.1" /db_xref="GI:219666223" /db_xref="InterPro:IPR011128" /db_xref="GeneID:7257103" /translation="MNFGIIGAGIVGTAIAIRLRQAGHHLVGVHSRSRRSYERFCTYL HHGERRPLEEWLPEADLLFITTQDCMIRAAAEELTRRGLYKEGQTWIHCSGSVSSRVM QVDKDLPINYLSLHPLQAFAGIDQAVELIPGTHFGIEGDREDIGLAIVTQLGGIPHQL DPQQKPLYHAGAVVASNYLVTLVGLAVQLFEEAGITNQEALESLLPLMKGALQNLENV GLPQALTGPIARGDVDVIRGHLEHMPAKIDPVYRALGLYTLDIGQKKMELNGGAYAKE VWEEMNSLMVKGTNEL" gene 162453..163301 /gene="panC" /locus_tag="Dhaf_0155" /db_xref="GeneID:7257104" CDS 162453..163301 /gene="panC" /locus_tag="Dhaf_0155" /EC_number="6.3.2.1" /inference="protein motif:TFAM:TIGR00018" /note="catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine" /codon_start=1 /transl_table=11 /product="pantoate--beta-alanine ligase" /protein_id="YP_002456659.1" /db_xref="GI:219666224" /db_xref="InterPro:IPR003721" /db_xref="GeneID:7257104" /translation="MIICKKISAVRDIVKEQRGQGRSIALVPTMGYLHEGHLTLVEEA RKSGAFVVMSIFVNPLQFGPNEDFARYPRDLERDAKKAEGAGVDLIFNPEVEEMYPAK NLTHVEVDELGDSLCGASRPGHFRGVTTVVSKLFHIVQPDRAYFGQKDYQQYLIICQM VKDLNFPIEVIGVPIVREEDGLALSSRNIYLSPEQRAEALVLQRSLGEAENWFRQGER SALSIEERIKELIRNESSGEIDYVEIRSAENLHRVEQIEGKIFIALAVRFGSTRLIDN KVLEGM" gene 163302..163685 /locus_tag="Dhaf_0156" /db_xref="GeneID:7257105" CDS 163302..163685 /locus_tag="Dhaf_0156" /EC_number="4.1.1.11" /inference="protein motif:TFAM:TIGR00223" /note="Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)" /codon_start=1 /transl_table=11 /product="aspartate alpha-decarboxylase" /protein_id="YP_002456660.1" /db_xref="GI:219666225" /db_xref="InterPro:IPR003190" /db_xref="GeneID:7257105" /translation="MFRTMMKSKIHRATVTEANLKYVGSITIDEELLEVADILPNEKV QVVNNNNGARLETYVIPGKRGERTVCLNGAAARLVQVGDEVIIIAYGIFTDEAARTYE PKVIFVDEGNNPVKIAHEEIHGQQS" gene 163844..165469 /locus_tag="Dhaf_0157" /db_xref="GeneID:7257106" CDS 163844..165469 /locus_tag="Dhaf_0157" /EC_number="1.4.3.16" /inference="protein motif:TFAM:TIGR00551" /note="KEGG: drm:Dred_0164 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="L-aspartate oxidase" /protein_id="YP_002456661.1" /db_xref="GI:219666226" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004112" /db_xref="InterPro:IPR005288" /db_xref="InterPro:IPR006076" /db_xref="GeneID:7257106" /translation="MRRYLVPWRFEECRIYSTGVLVLGSGIAGLYTALKASEYFEVTV LTKKGIPESNTKHAQGGIAVALDQEDSPSLHYEDTLYAGAGLCESDSVRALVEDGPLR VEELIRMGAHFDRKNGKLAFTQEAAHSRRRVLHANGDATGEEIERTLIAQALGEERIL VKEEQFLLDLLKNSKGEVIGALSLNELTHELEIYLAQAVVLATGGLGQLYCYTTNPEV ATGDGIAAAYRAGAQLMDMEFVQFHPTALFIPGAPRFLISEAVRGEGAQLLNAQGERF MQDVPGKELAPRDVVARGIWREQAKGEVTLDFRPIGVAKVPRRFPMIYQTCLDYGINV LEERLPVAPAAHYMMGGVRTDERGRTSLPNLYANGECACNGVHGANRLASNSLLDGLV FGGRIVEDIVNTARAKGSSNPQPRDIYAEKDEKLPEAGQEQIPLKREELQELMWEYVG IIREEEGLKKAIKLIRSWDSAFIPEKEIPQLELKNLLTAGYCVARAALAREESRGGHY RSDYPEINTRDLKHSIQARGTGDVCTIPVSRVD" gene 165435..166319 /locus_tag="Dhaf_0158" /db_xref="GeneID:7257107" CDS 165435..166319 /locus_tag="Dhaf_0158" /EC_number="2.4.2.19" /inference="protein motif:TFAM:TIGR00078" /note="KEGG: hmo:HM1_0664 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide pyrophosphorylase" /protein_id="YP_002456662.1" /db_xref="GI:219666227" /db_xref="InterPro:IPR002638" /db_xref="InterPro:IPR004393" /db_xref="GeneID:7257107" /translation="MFAPFQYQELIERALQEDLGTGDLSSAIFPKTAKTHAKIYAKQK GIACGLEITKQVFKTVDPELEVSISKADGELVERGTVVMEITGAICSILSAERTALNF LQHLSGVATATFEAVTECYGLPTRITDTRKTIPGLRMLQKYAVAMGGGQNHRFGLYDA VMLKDNHIAAAGGIRPAVAAARSRIGHMVKIEVECENLEQVQEAVAAGAEVIMLDNMN LETMGKAVEIVQGRAVVEASGGIRKGDLRAVAETGVDVISMGAITHSVQAMDFSLDIG DIKALTKERWEKGENCAK" gene 166309..167289 /locus_tag="Dhaf_0159" /db_xref="GeneID:7257108" CDS 166309..167289 /locus_tag="Dhaf_0159" /inference="protein motif:TFAM:TIGR00121" /note="TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: gtn:GTNG_2114 BirA bifunctional protein" /codon_start=1 /transl_table=11 /product="biotin/acetyl-CoA-carboxylase ligase" /protein_id="YP_002456663.1" /db_xref="GI:219666228" /db_xref="InterPro:IPR003142" /db_xref="InterPro:IPR004143" /db_xref="InterPro:IPR004408" /db_xref="InterPro:IPR013196" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257108" /translation="MRNKILDVLKNQQGEFVSGESLSQALSITRAAVWKQIQGLKEAG YEIEGQTRKGYRLVGTPCALDLWALQQELRTQALGRQLFFFAELSSTNDLLKDMVRQG REHGTVVIARRQTTGHGRMQRAWESPEGGLWLSLLLKPRLSLGDAAKLTLSTGVALAQ TLQDLYGLAAGIKWPNDVVVQGRKIAGILGEVAGEWTTVQTLILGIGVNANFSGQTFS SKLPATTLQDILGYEVNLNHLAAQLLFNLEKEVQSLEQGDVQGLIQRWTSFAVGINQP VRIERAGTVYAGIFKGIREDGELILDLEGQEMTFSSGEVSLRAGDQYSPE" gene 167345..168121 /locus_tag="Dhaf_0160" /db_xref="GeneID:7257109" CDS 167345..168121 /locus_tag="Dhaf_0160" /inference="protein motif:TFAM:TIGR00671" /note="type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP" /codon_start=1 /transl_table=11 /product="pantothenate kinase" /protein_id="YP_002456664.1" /db_xref="GI:219666229" /db_xref="InterPro:IPR004619" /db_xref="GeneID:7257109" /translation="MILVFDVGNTNIVLGVYEQKDLIYHWRISTDKSRTVDEYAVIIK NLFDLNGLDMSRIKAVVMSSVVPPVMPTLESLARKYFDVEPLVIGPGVKTGMPIVYDN PREVGADRIVNAVAAYHKYGGPLVIVDFGTATTFCAISKRGEYLGGAIAPGVGISTEA LFQRASKLPRIEIVKPKSIIAKNTVAGMQSGIYYGYTGQVDRIVTLMKQELGRDTRVI ATGGLAELIQEDSQEIETVDPFLTLEGLLLIYERNSNQQP" gene 168140..169105 /locus_tag="Dhaf_0161" /db_xref="GeneID:7257110" CDS 168140..169105 /locus_tag="Dhaf_0161" /inference="protein motif:TFAM:TIGR00737" /note="TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: amt:Amet_4527 nifR3 family TIM-barrel protein" /codon_start=1 /transl_table=11 /product="TIM-barrel protein, nifR3 family" /protein_id="YP_002456665.1" /db_xref="GI:219666230" /db_xref="InterPro:IPR001269" /db_xref="InterPro:IPR004652" /db_xref="GeneID:7257110" /translation="MRLGKFELGIPAFLAPMAGVTDKAFRETVRSVGGLHVWTEMISD KALTYMNSRTLEMLDLSGEASPRIVQLFGSEPEVMAKAAALAVERDAEIIDINMGCPT PKIVKNGEGSALLQDLPLAQRIAEAVVKAVEVPVTVKMRLGWTAERIVAPELAKRVEA VGVQMVSVHGRTREQFYAGTANRDGIKKVKGGVSIPVIANGDIFSPQEAKTVLEATGC DGVMVGRGSLGNPWLIPQINVFLNKGVLLEEPSLEQKLKVATEHFERVLNYKGERIGL NEMRKHAVWYIKGIRNAAQMRDYIMQTKTPLEMKNLFRRILQENA" gene 169304..169774 /locus_tag="Dhaf_0162" /db_xref="GeneID:7257111" CDS 169304..169774 /locus_tag="Dhaf_0162" /inference="protein motif:TFAM:TIGR01462" /note="TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pth:PTH_0262 transcription elongation factor" /codon_start=1 /transl_table=11 /product="transcription elongation factor GreA" /protein_id="YP_002456666.1" /db_xref="GI:219666231" /db_xref="InterPro:IPR001437" /db_xref="InterPro:IPR006359" /db_xref="GeneID:7257111" /translation="MAEKEVILTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDI SENSEYDDAKNEQAFIEGRIITLEKMLRNARVIDDLEGSEVVALGTTVILKDKEFGEE EEYTIVGSAEADPGSNKISNESPVGKAVLGQPKGTVVEINVPAGILYYEIVDIR" gene 169967..171433 /locus_tag="Dhaf_0163" /db_xref="GeneID:7257112" CDS 169967..171433 /locus_tag="Dhaf_0163" /inference="protein motif:TFAM:TIGR00499" /note="TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pth:PTH_0263 lysyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="lysyl-tRNA synthetase" /protein_id="YP_002456667.1" /db_xref="GI:219666232" /db_xref="InterPro:IPR002313" /db_xref="InterPro:IPR004364" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR006195" /db_xref="GeneID:7257112" /translation="MDEMNDLWRVRLDKLAQLRENGVEPYADRYQRTHMAQEILDGFD TLEGQEVKIAGRMMSKRDQGKVVFTHIQDFSGQIQAYIRKDDVGEDWFELISKFDIGD IVGIKGTVFRTRRGEISVHANEVQILSKSMRPLPEKFHGLTNVELRYRQRYVDLIMNP EVRNVFVMRSKIIRSMRNFLEGQGFLEVETPTLHTIPGGAAARPFITHHNTLDMDLYL RIALELPLKRLIVGGFDKVFEIGRNFRNEGISIKHNPEFTMMELYQAYANFEDIMELT ENMISAIAKEVHGTTEVTYQGQMIDFKTPWRRLPMLEGILEYGGVDFSQIHTDEEAQQ AAKEKGLKVEPGSSRGKIINEFFEEFVEPNLIQPTFVIGHPVEISPLAKRNAEHPEYT DRFEAFAYGRELGNAFSELNDPIDQRQRFEAQVAERDKGDDEAHMMDEDFVQALEYGL PPTGGLGIGIDRLVMLLTDSASIRDVILFPTMRPREDD" gene 171927..173480 /locus_tag="Dhaf_R0006" /db_xref="GeneID:7257113" rRNA 171927..173480 /locus_tag="Dhaf_R0006" /product="16S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7257113" gene 173720..173796 /locus_tag="Dhaf_R0007" /note="tRNA-Ile1" /db_xref="GeneID:7257114" tRNA 173720..173796 /locus_tag="Dhaf_R0007" /product="tRNA-Ile" /db_xref="GeneID:7257114" gene 173903..173978 /locus_tag="Dhaf_R0008" /note="tRNA-Ala1" /db_xref="GeneID:7257115" tRNA 173903..173978 /locus_tag="Dhaf_R0008" /product="tRNA-Ala" /db_xref="GeneID:7257115" gene 174082..176993 /locus_tag="Dhaf_R0009" /db_xref="GeneID:7257116" rRNA 174082..176993 /locus_tag="Dhaf_R0009" /product="23S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7257116" gene 177134..177249 /locus_tag="Dhaf_R0010" /db_xref="GeneID:7257117" rRNA 177134..177249 /locus_tag="Dhaf_R0010" /product="5S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7257117" gene complement(177648..179273) /locus_tag="Dhaf_0164" /db_xref="GeneID:7257118" CDS complement(177648..179273) /locus_tag="Dhaf_0164" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: gka:GK0971 hypothetical protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002456668.1" /db_xref="GI:219666233" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7257118" /translation="MQRNKDVYVSNSKRNQALRLISHIAREMENVLNQSPHGDWAQVI GPLRQVIDANIGDNEFLVINSLEGQALVHSNRFREGNFVTKGELGILGTTKPVSQIYH RDTGEILLDVICPIYIKGEHRYVARMGIPLQKNKLSYNFALSSIPLFVLGLGWSWSSP SLISIGVTLGAFTLWAAYSYIFHHKIISTLNEIFRVTKSITRGNLTNSAAIKTTNELS TLSYEVNKVNNGIKSIIANITTISQKSHEISNSQAAHTKTLAESYEQLAALFQEFSAG SVEQIDGMKRASEQVLEIQAASERIRYSTQEVQISSNSARQVSQDGLRAVEDIIQEME VISSSTYKANTSIQSLEEQALKIGEIVSIINSISGQTNLLALNAAIEAARAGEHGRGF SVVADEIRKLASDSAESAHQIMELIHSVQDMIGSASNDMSRGLVEVENGKIIIRQAGD AIHSLDQVIQGTGEKIQANTNNVDQLLLQSKNLAEVQSNAVSIASQFSLAAQQAATTM DGQMQSTQQVASMAKDLAETSEQLDNFIKRFTL" gene 179841..181361 /locus_tag="Dhaf_0165" /db_xref="GeneID:7257119" CDS 179841..181361 /locus_tag="Dhaf_0165" /inference="protein motif:TFAM:TIGR01734" /note="transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid" /codon_start=1 /transl_table=11 /product="D-alanine--poly(phosphoribitol) ligase subunit 1" /protein_id="YP_002456669.1" /db_xref="GI:219666234" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR010071" /db_xref="InterPro:IPR010072" /db_xref="GeneID:7257119" /translation="MNLISRIDSYAESCPDRVAHHYRESRLTYRQLKEASDALACYLI ETLKDDRTPIVVYGHKQHEMLICFLACVKSGHAYIPVDFSLPSQRIEDIIQSSRTRLI LSPGESPEREGIRTIRSDAISRLIRSYLGKSPSKDYQVKDHETYYIIYTSGSTGKPKG VQITLANLESFVHWGVGVGRFPEAEVFLNQAPFSFDLSVMDLYLALTSGSTLYSIDKA MIAEPKELFAYFKQSGLTVWVSTPSFAEMCLGDSSFNDELLPDLKVFMFCGETLSNQC AEKLYRRFPQGKVINSYGPTEATVAVTALIVDLEMCARKEPLPVGRVKEDCRLLIVDS EGVPQEEGSQGEIVILGASVSPGYYRNEEMTDKAFFARSWDGDVKRCYRTGDEGYLKE GLLHYGGRIDFQIKLNGYRIELEDIENNLRKVEGVANAIVLPIKKDGRVHYLAGVVVP NKKLDKREFEIGQMIKAELKNYLPDYMIPRKIMFRDSLPMTVNGKVNRAALMEEFQ" gene 181358..182506 /locus_tag="Dhaf_0166" /db_xref="GeneID:7257120" CDS 181358..182506 /locus_tag="Dhaf_0166" /inference="protein motif:PFAM:PF03062" /note="PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cbk:CLL_A0688 protein DltB" /codon_start=1 /transl_table=11 /product="membrane bound O-acyl transferase MBOAT family protein" /protein_id="YP_002456670.1" /db_xref="GI:219666235" /db_xref="InterPro:IPR004299" /db_xref="GeneID:7257120" /translation="MIPYSNLFFFYIIGLILLPGTCLGVMEKPLKLYGLAASLLIIGL LFSDSKLQLFLLVLFYLGELFLVKGYSLLKQKYPQRWVLWLTILLALVPLALSKWGHL FTDRLLGFLGISYLTFKVIQMLLEISDGLIKEVKLVDFTYFLLFFPTLSSGPIDRSRR FLSEVNQIIPRHEYLHRVYQGLRKLLLGAGYKFILGNSIYTYWLSKIPTEAHGLAETV NYMYGYSFYLFFDFAGYSLMAIGISYILGVKTPENFDKPFISKDIKDFWNRWHMTLSF WFRDYLYTRFVMASMKKKRFKNRYTASYLGYLLTMGTMGIWHGTEIHYLLYGLYHGGL IVGTDYFQRHSALYKKYKNTPLWIGASTLVTFHLVCFGFLIFSGYLFK" gene 182538..182771 /locus_tag="Dhaf_0167" /db_xref="GeneID:7257121" CDS 182538..182771 /locus_tag="Dhaf_0167" /inference="protein motif:TFAM:TIGR01688" /note="TIGRFAM: D-alanyl carrier protein; KEGG: cbe:Cbei_4330 D-alanyl carrier protein" /codon_start=1 /transl_table=11 /product="D-alanyl carrier protein" /protein_id="YP_002456671.1" /db_xref="GI:219666236" /db_xref="InterPro:IPR003230" /db_xref="GeneID:7257121" /translation="MEEKILSLLERVCGTDEVRNERDMNLFEAGILDSLGVIELLVGA EELGIKIEPTEIERTDIDTPAKIIAAFSKRVAG" gene 182768..183967 /locus_tag="Dhaf_0168" /db_xref="GeneID:7257122" CDS 182768..183967 /locus_tag="Dhaf_0168" /inference="protein motif:PFAM:PF04914" /note="PFAM: DltD domain protein; DltD central domain protein; KEGG: bce:BC2846 protein DltD precursor" /codon_start=1 /transl_table=11 /product="DltD domain protein" /protein_id="YP_002456672.1" /db_xref="GI:219666237" /db_xref="InterPro:IPR006998" /db_xref="InterPro:IPR007002" /db_xref="GeneID:7257122" /translation="MKRFLPIVLALVISCLVVWGGNEILVSKIADNYDPSFGYKLNIQ KNQGLILQRVGLEKGGSIPVYGSSELSGSTDPFQPVNFFAGQYEGVYYNLIGRGYCQS LIHLINFGALGDSLKGEKIVFFLSPQWFSKTGITSDDFQKNFSQQQYLTFLNNEEISP QLKRLTAQRVDSLLAQDESMDMRILSYLSANDAEQAQISLGALQPYYRLKEALLSTKD HVQGYRTLVEEPPLKGKDKSNMKPAIERSTVKIDWEAEKKRAQEVGKARSDNNQFGID NGYFNDYLKEKLPNYKDSMHDQSYLESPEYGDLELLLSLCQELEIEPLFVSIPVNGLW YDYCGFPRQDRAQYYEKVKQLVTKAGYEFADFSDHEYDPYFLRDTMHLGWKGWVEVNE AILAYAR" sig_peptide 182768..182830 /locus_tag="Dhaf_0168" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.992 at residue 21" gene 183939..184061 /locus_tag="Dhaf_0169" /db_xref="GeneID:7257123" CDS 183939..184061 /locus_tag="Dhaf_0169" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456673.1" /db_xref="GI:219666238" /db_xref="GeneID:7257123" /translation="MKRFLPMLGESLLYTAIILGIIVVYVLAEANEVNFIYNQF" sig_peptide 183939..184025 /locus_tag="Dhaf_0169" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.775) with cleavage site probability 0.686 at residue 29" gene complement(184171..185694) /locus_tag="Dhaf_0170" /db_xref="GeneID:7257124" CDS complement(184171..185694) /locus_tag="Dhaf_0170" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter)" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002456674.1" /db_xref="GI:219666239" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7257124" /translation="MANAETQTMNLDPRTPLFTKADRMMYIHSAIGFAIMAIFWLAPA AAPLTPIGMKLVGIFLGMVYLWSTVSCLWPSVLGLFLIGLSGFAGQGFAGMKAVVLTG FGNDTVVMMLFIMVLFGAMDEVGCTQYIARWFLTRKIITGRPFAFLAVFYLGCYVLST LVSPITSLLLLWPVSLKIMKTLGVERTDKIWPIFFVGMFFISAIGMPFFPFLSAQLVV LSAFDAMTKGTMPVPYLPYMALNFIMSMLLIVTFLGAVKFIFRPDISKLKAIDAERIA EQEKLPPMNIQQKIMMAVLPTFILMLLAPSFLPKSLAIVKFLGSLGTIGVAMFWIAIL CFIRIGGKPIINFKEVAYRQLSWDVFFLVAAAVYAANAISHESTGVNAFVIQLLNPIL GDASEMVFVAILFTAAIVLTNFANNAAMAIILMPIILAFCGQLGLPPIPIAMGVTQLV FLAMLTPAACPHASMMFGRKDIYEVKDIMKYGFPMVTIGLLYFIFIGYPLAKFLFGA" gene 186092..187972 /locus_tag="Dhaf_0171" /db_xref="GeneID:7257125" CDS 186092..187972 /locus_tag="Dhaf_0171" /inference="protein motif:PFAM:PF05935" /note="PFAM: Arylsulfotransferase; KEGG: lbr:LVIS_2143 arylsulfate sulfotransferase" /codon_start=1 /transl_table=11 /product="Arylsulfotransferase" /protein_id="YP_002456675.1" /db_xref="GI:219666240" /db_xref="InterPro:IPR010262" /db_xref="GeneID:7257125" /translation="MRTYLNTEKHLITLQAESEERFLAELRAGNYTAESPLVVKNPYI INPLAAVICFNTDEETTAEITVKGKAIEGDLSHTFAAAKEHVLPVYGLYDDYVNTVVI KLSNGKTSEVKIEVEELNVNKALYCRTTPEYFGKDFMLISTTTPLIESARTAGFDYAG DLRWCITNLQSWDIKKLENGRLLYTSHRTVQKPYYNVGVMEMDFCGKIYKEYRLPGGY HHDAVELENGNILAASDNDFNDSVEDFVVEIERATGAVIKSWDLQKILPRGQGKAGDW NHHDWFHNNAVWYDKPTNSITMSGRHMDAVINFDYDSGALNWILGDPEGWSEEWQKYF FKNVTKGDFDWQYEQHAARILPNGDVFLFDNGTYRSKNEATRVDPEQNFSRGVIYRID TDKMEIEQVWQYGKERGAEFYSPYICNVDYYGEGHYMVHSGGIATYRGKHTDGLGAML LNKYKDEHIHLTLESITVEVQNDQLKYELKVQGGNYYRARRVSPYDEKTNLVLGKGEL LGGFGVTPEFMKVNFKDAETELSEKHNLNVILEEDRLAIRASFREGSQVFLELKGAEQ SKFYNIPTEVHDVTAACVSFEEQNDNDFQFYVSREGLSGEFGIYLNIDSKRYDTHLSV KL" gene 188169..189710 /locus_tag="Dhaf_0172" /db_xref="GeneID:7257126" CDS 188169..189710 /locus_tag="Dhaf_0172" /inference="protein motif:PFAM:PF01266" /note="PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_002456676.1" /db_xref="GI:219666241" /db_xref="InterPro:IPR005805" /db_xref="InterPro:IPR005806" /db_xref="InterPro:IPR006076" /db_xref="GeneID:7257126" /translation="MKIDHTKGKYYLDKSQGTPPSFWLDSTPKTNYPSLTGDISVDAV VIGGGMAGISSAYLLTQEGLKVAVLETDRILQGTTAYTTAKLTSQHGLIYDKLLGQMG AEKAKQYAEANESAIEFVAKLVEREAIDCDFTRQPAYIYTQQNKSKEKLEKEMKAAQQ CGIDAHYVTELDLPLAVKGALRFDQQAQFHPRKYLLALAGKIAEKGGHIFEQTKAVDI RGDGPFIVLTQQGSRVKADYVVMACHYPFNILPGLYVSRIYQEREYAVVVKAKEAFPG GMYINAEEPARSLRGLPTPDGERILIVGEKHRTGHGKNLTEHYKNLMEFAQGLFTVEE FPYYWSTQDCTTLDDLPYIGPISRSKPNLLIATGFRKWGMTHGTVAALIIRDRIVRGA SPWQEVYAPSRSISLNFAASFMANSSLLAFDLVAGKLMRGKEIYSLRPGEAVIANMDG RRVGLYMDSEANLHRVDTTCPHLGCEVQWNDAELSWDCPCHGSRYDVDGNPIEGPTLK PLAKY" gene 189809..191488 /locus_tag="Dhaf_0173" /db_xref="GeneID:7257127" CDS 189809..191488 /locus_tag="Dhaf_0173" /inference="protein motif:TFAM:TIGR00704" /note="TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: drm:Dred_1581 Na/Pi-cotransporter II-related protein" /codon_start=1 /transl_table=11 /product="Na/Pi-cotransporter II-related protein" /protein_id="YP_002456677.1" /db_xref="GI:219666242" /db_xref="InterPro:IPR003841" /db_xref="InterPro:IPR004633" /db_xref="InterPro:IPR008170" /db_xref="GeneID:7257127" /translation="MDVQTMLFHFLGGLGLFLYGIKSMSDGLQAVAGDRLRVILEKGT KTPLRGVLTGLIVTGLIQSSSGTTVLTVGLVNAGLLNLRQAIGIIMGANIGTTVTAYL IGIKLEDYALPIIAVGVLILFFIKNKRLTYFGQVLLGFGLLFYGMSIMGDGLGPLKES AYFIGLMSNVDNNPLLGVLIGTVFTCIVQSSSATIGVLQELANQGVVTYQQAVPILFG DNIGTTITALLAGIGASVSARRAAATHFLFNFIGTFIFLPLTILGIFPLMVEQFTNFI AFLIPGGGGWETLAIKMKIAQTHGLFNMTNTLMQLPFVGVLAAIVTKLIPEKDEVVVD ANAQYLDRRFFGNPSVALANASREVMHMGKVAGQAVDNAMNYFFKRQSANRQYVIQME SATDRLENQITEYVLKATSGTNLTKEQSDQRYRVLQVIGDMERVGDHSVNLIELTDYA LENKVKFSEEAQKDLMEMFANVQDIYQASLDALQKNDVELAKKVLEYDDVIDEMEAKL RDGHIHRLNEGTCNGSYGAVFLNIISNLERIGDHSVNIAKYAMAEPKHKLT" gene complement(191768..192328) /locus_tag="Dhaf_0174" /db_xref="GeneID:7257128" CDS complement(191768..192328) /locus_tag="Dhaf_0174" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: cth:Cthe_2286 phage integrase" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_002456678.1" /db_xref="GI:219666243" /db_xref="InterPro:IPR002104" /db_xref="GeneID:7257128" /translation="MTVEPIRDKAQIRTLYNHLNQSHPKYAMIFKFGINTGLRISDII TLKVSDIYGSKKQFKDYLVLTEQKTGKLKKIKLNDTLRKALNIYIHKQNLELMDYLFP SQKGGYIGRIQTYRVLKHSALALGIENFGTHSLRKTWGYWTYKLSQYNIGLVMDIFNH SSQSVTLRYIGINQDQRDQLYDIVQL" gene 192583..193398 /locus_tag="Dhaf_0175" /db_xref="GeneID:7257129" CDS 192583..193398 /locus_tag="Dhaf_0175" /inference="protein motif:TFAM:TIGR00277" /note="KEGG: swo:Swol_2150 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002456679.1" /db_xref="GI:219666244" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7257129" /translation="MKRIVCPKDYYNEQGLLLSAKGTKITLSQFLRLQRKYDFLSETE ANERTLASYEKIKQKICRKDERYKRADDQLLDQASALLVNIVFESKRKPWYMYLTALG NHINWLYTHSIDVALLSLMMAIESGVSQRSLWDLGVGGILHDVGKLLIPKKIIQKRTE LSDIEKDILRQHCELGVECTTDCAFPILSQDIIAQHHERLDGSGYPNQLQEGQINEYV KIVMIADAFDTITAGRPYRKTVEVEEALAYLEDQEGAFSRMYLETLKNILVRP" gene 193712..194029 /locus_tag="Dhaf_0176" /db_xref="GeneID:7257130" CDS 193712..194029 /locus_tag="Dhaf_0176" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456680.1" /db_xref="GI:219666245" /db_xref="GeneID:7257130" /translation="MLNRLFRELRIEFYWVKKELTRRWHLDTPIGIVGVIVLLSGLGL FLLIGQGIAKIFRAAIPWVTGNSVSTVYWSSIGLALKVSFVFLVFATSLLLLFWLKSH NRR" gene 194176..195453 /locus_tag="Dhaf_0177" /db_xref="GeneID:7257131" CDS 194176..195453 /locus_tag="Dhaf_0177" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: hmo:HM1_1755 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002456681.1" /db_xref="GI:219666246" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7257131" /translation="MDFMSGVTGSHLFNMIMIPVQLIIIFMTFYYFVLSMFGLFRRPD KKVLEPEKSFALVVAAHNEEAVIGPLVDNLLNLDYPKELYDVFVVADNCTDKTALIAK NAGALVHQRFNNEKRGKGYALEWMFHRLFKLERHYDAVIIFDADNLVNETFLVEMNSK LCQGHQIVQCYLDSKNPYDTWVTNTFSITFWLSNRLLQLARYNTGFLNNVLGGTGMCI STKVLKDLGWGATSLTEDLEFTMKALISGIKTTWAHDAIVYDEKPLTFIQAWNQRKRW AQGQVDVAGRYFFPLIYKAFKERKLMYFDAAVHLFQPALVMIATFFMFVNLISGLQSS YTQVFNVVMPWSGWQILSAFSLVFPVAALALERLPWRAYAGLILYPVFIYSWIPIVFL GFVNRKDKSWSHTKHTRSIKYDDVVKEKKVSSS" gene 195665..196522 /locus_tag="Dhaf_0178" /db_xref="GeneID:7257132" CDS 195665..196522 /locus_tag="Dhaf_0178" /inference="protein motif:TFAM:TIGR01230" /note="TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: drm:Dred_0489 putative agmatinase" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="YP_002456682.1" /db_xref="GI:219666247" /db_xref="InterPro:IPR005925" /db_xref="InterPro:IPR006035" /db_xref="GeneID:7257132" /translation="MKMTESPGVFMGGETPYEEADAVILGIPMDYTVSFRPGTRLGPL SIRNVSIGIEEYSVYLDKDLSDYAYCDCGDLSLPFGNVEKSLQVIEAAARQVVEDGKF PIFLGGEHLVTYPLLKPFIEKYPELRVVHFDAHADLRTDYSGEPNSHATVMRKISEAL GPHRVYQFGIRSGTREEFLFAKEHNHLVVEEVLEPLKAVLPELKGKPVYVTLDIDVVD PAFAPGTGTQEAGGCTSREIIKAVHALSELDVVGFDLVEVSPLMDTSERTALLAAKIV REAILSFVK" gene 196603..196678 /locus_tag="Dhaf_R0011" /note="tRNA-Val1" /db_xref="GeneID:7257133" tRNA 196603..196678 /locus_tag="Dhaf_R0011" /product="tRNA-Val" /db_xref="GeneID:7257133" gene 196685..196760 /locus_tag="Dhaf_R0012" /note="tRNA-Asp1" /db_xref="GeneID:7257134" tRNA 196685..196760 /locus_tag="Dhaf_R0012" /product="tRNA-Asp" /db_xref="GeneID:7257134" gene 196768..196843 /locus_tag="Dhaf_R0013" /note="tRNA-Phe1" /db_xref="GeneID:7257135" tRNA 196768..196843 /locus_tag="Dhaf_R0013" /product="tRNA-Phe" /db_xref="GeneID:7257135" gene 196845..196919 /locus_tag="Dhaf_R0014" /note="tRNA-Gly1" /db_xref="GeneID:7257136" tRNA 196845..196919 /locus_tag="Dhaf_R0014" /product="tRNA-Gly" /db_xref="GeneID:7257136" gene 196927..197000 /locus_tag="Dhaf_R0015" /note="tRNA-Cys1" /db_xref="GeneID:7257137" tRNA 196927..197000 /locus_tag="Dhaf_R0015" /product="tRNA-Cys" /db_xref="GeneID:7257137" gene 197018..197106 /locus_tag="Dhaf_R0016" /note="tRNA-Leu1" /db_xref="GeneID:7257138" tRNA 197018..197106 /locus_tag="Dhaf_R0016" /product="tRNA-Leu" /db_xref="GeneID:7257138" gene 197112..197188 /locus_tag="Dhaf_R0017" /note="tRNA-Val2" /db_xref="GeneID:7257139" tRNA 197112..197188 /locus_tag="Dhaf_R0017" /product="tRNA-Val" /db_xref="GeneID:7257139" gene 197350..198186 /locus_tag="Dhaf_0179" /db_xref="GeneID:7257140" CDS 197350..198186 /locus_tag="Dhaf_0179" /EC_number="2.1.1.72" /inference="protein motif:TFAM:TIGR00571" /note="KEGG: ctc:CTC00387 putative adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase" /codon_start=1 /transl_table=11 /product="DNA adenine methylase" /protein_id="YP_002456683.1" /db_xref="GI:219666248" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002294" /db_xref="InterPro:IPR012326" /db_xref="InterPro:IPR012327" /db_xref="GeneID:7257140" /translation="MHKDRLVAPVVKWVGGKRQLLEDLTPLFPKRVMSYCEPFCGGGA VLFKLQPDTAWVNDINSELIRMYEVIRDDVEELIRALGEHPNEEEHFYRVRDWDRDKE KYGNLSKVQKAARVIYLNKTCYNGLFRVNNAGEFNTPFGHYKNPNIVNEHTLRAVSAY FQRAQITFSSTDYAEVLAGVAKGTFVYLDPPYDPVSSTANFTGYAKGGFDRAEQIRLR ECCDELDRRGIKFMLSNSATEFIKEQYGAYQITIVKAKRAINSNAAKRGQIDEVVVRN YK" gene 198224..199480 /locus_tag="Dhaf_0180" /db_xref="GeneID:7257141" CDS 198224..199480 /locus_tag="Dhaf_0180" /inference="similar to AA sequence:KEGG:Cthe_2471" /note="KEGG: cth:Cthe_2471 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456684.1" /db_xref="GI:219666249" /db_xref="GeneID:7257141" /translation="MFKKYDILSRIEAEGKFTISASQIKEYREPRLMAKFDHNINLPR IFARNKLAILPISRGDYIISHFEAYQTFQIVDTTVTRVSLPPNLQSLSASHIPSEAIA VNCALASGMLADFLEEETLYATVSGRMGSGQFDFTIRNLRTQCPTEVAVSNSQIEIDA ALEGVHSLSLLEAKRDLAEDFLVRQLYYPFRVWSSRVTKQVRPIFLVYSNGVFSLYEY EFQDPNAYNSLVLVKHKNYSIEDTAIGADDLHDVAEGTQLLQEPEIPFPQANSFERVI NICELLSTQELSREQVTEEYAFDIRQTNYYTDAARYLGLVEKRYEEGRKPVYSLSSRG KRIMQLSYQQRQLAFCEAILQHRVFRETFKLYMENGSLPDQNTIVSIMQQSDLYQIGS MSTFVRRSTTVSGWLNWILGLIGEEH" gene 199681..201132 /locus_tag="Dhaf_0181" /db_xref="GeneID:7257142" CDS 199681..201132 /locus_tag="Dhaf_0181" /inference="protein motif:PFAM:PF01276" /note="PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: aoe:Clos_0383 Orn/Lys/Arg decarboxylase major region" /codon_start=1 /transl_table=11 /product="Orn/Lys/Arg decarboxylase major region" /protein_id="YP_002456685.1" /db_xref="GI:219666250" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR000310" /db_xref="InterPro:IPR001597" /db_xref="InterPro:IPR008286" /db_xref="GeneID:7257142" /translation="MPSLRQSKAPVYEALLKYKSMRVVPFDVPGHKQGRGNPELTEFL GEKCLSVDVNSMKPLDNLGHPVSVIKEGEELAAEAFGAHHAFFMVNGTTSAVQAMVMS ACKLGEKIIMPRNVHRSAINALIISGAIPVYVNPGVNKELGIPLGMSVADVRKAIKEN PDAKAILVNNPTYYGICSDLKTITELAHEHSMLVLVDEAHGTHFYFGENMPISAMAAG ADMAAVSMHKTGGSLTQSSFLLIGKRLNVGRVRHMINLTQTTSASYLLLSSLDISRRN LALNGQRIFDKALYLANYGRDEVNKLGGYYAFGKELNNGDSVYDFDCTKLSIHTRDIG LAGIEVYDILRDDYGIQIEFGDIGNILAIISVGDRALALERLVSALAEIKRRYQRDKT GMFDHEYINPVVVMGPQQAFYAQQRSLPIQESKGKVSGEFVMAYPPGIPILAPGEKIT EDIIDYIAYSKAKGCFLTGTEDMDIENIKVVEE" gene 201135..201989 /locus_tag="Dhaf_0182" /db_xref="GeneID:7257143" CDS 201135..201989 /locus_tag="Dhaf_0182" /inference="protein motif:TFAM:TIGR00417" /note="catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine" /codon_start=1 /transl_table=11 /product="spermidine synthase" /protein_id="YP_002456686.1" /db_xref="GI:219666251" /db_xref="InterPro:IPR001045" /db_xref="GeneID:7257143" /translation="MELWYTEEHTENVRFSIKVDRQLYSGQSEFQRIDVFESKEFGTF FTLDGLMMVTQKDEFIYHDMIVHVPMATNPQIKDVLVIGAGDGGTVRELTRYDSIVNI DMVEIDKLVVDVCKEYLPQTACKLEDPRVRLFFEDGLRFIRTKENSYDLIIVDSTDPF GPGEGLFTKEFYGNCYKALKDDGILVNQHESPYYETYAQNMGRAHQRIKEFFPVCRVY QAHIPTYPSGHWLFGFASKKYDPLIDIDEQAWNDLGIKTQYYNTEIHKGCFALPNYVK EQLADAVE" gene 202228..202635 /locus_tag="Dhaf_0183" /db_xref="GeneID:7257144" CDS 202228..202635 /locus_tag="Dhaf_0183" /inference="protein motif:TFAM:TIGR02481" /note="TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: swo:Swol_2168 iron-binding protein, hemerythrin" /codon_start=1 /transl_table=11 /product="hemerythrin-like metal-binding protein" /protein_id="YP_002456687.1" /db_xref="GI:219666252" /db_xref="InterPro:IPR012312" /db_xref="InterPro:IPR012827" /db_xref="GeneID:7257144" /translation="MLKWKDEYSIGVEEIDEQHKHLFEIGNEIYDLLENYLLPDKYDK IIQIIAELKEYTVHHFQTEEELMLKIKYPGYFKQKVAHDDFIKEVESVDFSAIDQDQD GHTRKLLEFIFGWVLDHILKSDLGIKSFMQITR" gene 202890..203765 /locus_tag="Dhaf_0184" /db_xref="GeneID:7257145" CDS 202890..203765 /locus_tag="Dhaf_0184" /inference="protein motif:PFAM:PF08812" /note="PFAM: Sporulation protein YtxC; KEGG: sth:STH2563 hypothetical protein" /codon_start=1 /transl_table=11 /product="Sporulation protein YtxC" /protein_id="YP_002456688.1" /db_xref="GI:219666253" /db_xref="InterPro:IPR014199" /db_xref="GeneID:7257145" /translation="MEQHSVQVGTQYYRESIYERLRQLQEQEKLPVVLHEYQQGKHWL IDCEFQLEAIEEDRETTKKIHSYYLANAIAETILQHWEKDHIRWLLKSKYKLKREEVV QVFEKSLQYLNQESRQWKNYRIHRKASLVNQIVKCIEAQPFFDMEGFLRFRAKDYKEE IYRAVNYVVNEHVIEAEYEEFINLLKRFVDSQKPRIHTLHVGITKHGKFNLYNEEGKK ITKKYMDELSFMDTSQELTYEDLLVSALIAVAPRKIVLHIRYEGYQDTLQTICKVFEG RVSYCTESCPICEKI" gene 204102..206021 /gene="thrS" /locus_tag="Dhaf_0185" /db_xref="GeneID:7257146" CDS 204102..206021 /gene="thrS" /locus_tag="Dhaf_0185" /inference="protein motif:TFAM:TIGR00418" /note="catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)" /codon_start=1 /transl_table=11 /product="threonyl-tRNA synthetase" /protein_id="YP_002456689.1" /db_xref="GI:219666254" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR002320" /db_xref="InterPro:IPR004095" /db_xref="InterPro:IPR004154" /db_xref="InterPro:IPR006195" /db_xref="InterPro:IPR012947" /db_xref="GeneID:7257146" /translation="MMVKITLKDGSIREIESGKSLMELAASISRGLAKAALAGKVNGE VKDLSYALTQDAEVEIITADSEEGLKILRHSTSHLMAEAVRNLFPGTILGIGPAIDNG FYYDFDSEHVFTPEDLEKIEAEMRRLVKENKRYERKEISRSDALQYFSAEGEKYKVEL IEDLPEDEVISMYTQGGFTDLCAGPHIPSTGVVKAFKLMNLAGAYWRGSEKNKMLQRI YGTVWAKKEDLDDYLFKLEEAKRRDHRKLGVELDLFSLHDEGPGFPFFHPKGMVLRNQ LEDFWRQEHRKRGYHEIKTPIILSRNLWENSGHWDHYKDNMYTTKIDDEDFAVKPMNC PGGMIMYKQKLRSYRDLPLRMGELGLVHRHELSGALNGLLRVRNFTQDDAHIFMLPSQ IKAEISGVIDLVDRFYKVFGFEYHVELSTRPENSMGADETWEMATNALQEALEAKGVN YKINPGDGAFYGPKIDFHLRDCLGRTWQCGTIQLDFQMPEKFDLTYIGEDGQKHRPVM IHRVVYGSIERFIALLTEHYAGAFPTWLAPVQVRVLPISERHEDYAQDIVRRLNDLDI RAEVDERREKISYKIREAQTHKIPFALVVGDQEAETDTVAVRRYGQANAGEKLSVAEF IALIQEEICSKKQLV" gene 206448..207311 /locus_tag="Dhaf_0186" /db_xref="GeneID:7257147" CDS 206448..207311 /locus_tag="Dhaf_0186" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbf:CLI_0981 DMT family permease" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002456690.1" /db_xref="GI:219666255" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7257147" /translation="MWIVYAFGSAFFAGITAILAKCGIKKTDSNMATAIRTIVVLAFS WLMVLMVESHTTIGDISGKTLLFLILSGLATGASWLCYFKALQMGDINKVVPIDKSST VLTIILAFILLNEGISIGKGVGVVGIGIGTYLMIQKKATEAAQPKANQAWLIYALLSA VFASLTAILGKIGIEGVEANLGTAIRTGVVLVMAWLVVFVTRKKGISREIPLKELGFI ILSGLATGGSWLCYYKALQDGPASVVVPIDKLSILVTIAFSYVVFHEKLAKKAALGLV LIVSGTLAMLI" gene complement(207359..208348) /locus_tag="Dhaf_0187" /db_xref="GeneID:7257148" CDS complement(207359..208348) /locus_tag="Dhaf_0187" /EC_number="1.4.1.16" /inference="protein motif:TFAM:TIGR01921" /note="TIGRFAM: diaminopimelate dehydrogenase; KEGG: cth:Cthe_0922 diaminopimelate dehydrogenase" /codon_start=1 /transl_table=11 /product="diaminopimelate dehydrogenase" /protein_id="YP_002456691.1" /db_xref="GI:219666256" /db_xref="InterPro:IPR010190" /db_xref="GeneID:7257148" /translation="MNKIRIGIVGYGNLGKSVELGIRQNEDMELVGVFTRRDPSSIKT VTPGVNVFTMDESKQMTEQIDVMVLCGGSMSDMPVQGPEFASLFNTVDGYDTHARIPE YFAAMDKNALESQKVCIIASGWDPGMFSINRLYAEAILPAGDTYTFWGKGISQGHSDA LRRIKGVKDAKQYTIPKDQAINAVRRGEMPELSTREKHWRECFVVLEEGADKERIKQE IKTMPNYFADYDTEVHFITEEELIKDHPGLPHGGLVIHHGRTGLDEKHHHVIEYRLAL DSNPDFTANVLVAFARAAYRLNREGVSGAKTVVDIAPAYLSSKSAEELRRSLI" repeat_region complement(208417..209985) /note="IS element" gene complement(208491..209849) /locus_tag="Dhaf_0188" /db_xref="GeneID:7257149" CDS complement(208491..209849) /locus_tag="Dhaf_0188" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002456692.1" /db_xref="GI:219666257" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257149" /translation="MFNIRQERLFSLEEILETSPRDSYSLILGSLDIIPLLNAVSKKA IFGAPTQLNYSAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKT VVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIEDQLPYSFTELVQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHP YLNPSHILADAGYDYAPIYEQARSIGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSY RYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSM AA" gene 210221..211957 /locus_tag="Dhaf_0189" /db_xref="GeneID:7257150" CDS 210221..211957 /locus_tag="Dhaf_0189" /inference="protein motif:TFAM:TIGR03457" /note="catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source" /codon_start=1 /transl_table=11 /product="sulfoacetaldehyde acetyltransferase" /protein_id="YP_002456693.1" /db_xref="GI:219666258" /db_xref="InterPro:IPR000399" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="InterPro:IPR017820" /db_xref="GeneID:7257150" /translation="MPKITMTPSEAICETLVAEGIDHVTGIVGSAFMDLLDLFPTAGI RFIPVRHEQSAGHMEDAFCRVTGRAGVIIGQNGPGITNMVTSVAAANSAHTPMVVICP SAGTPTVGWDGFQEADTVKIFEAITKETIRVPHPSRAADCLRTAFRIAYAERGPVLYD IPRDYFYGEISEQILEPHQYRVDQRGCGDLASLDKAAELLISAQRPVIISGRGVVDTQ SKDIVAKIAEILTAPVACTYLHNDAFPYDHPLWVGPIGYMGSKAAMNLVAEADVILAI GTRLSVFGTTPQYDIDYFPESAKIIQVDINPRNIARTHPVEVGLIADAREAAREILKR LEERIAEPKVSQSRLTQIKAQQNAWEEEIVQSAMVDGYPINPRRALYEIQKALPENAI VATDIGNVSSTANSYLKFKGAGKHIAALTFGNTGFAYPAALGAQLAEPDSPVVAIIGD GAWGMSLHEVSTAVEHNLPVVAIVFRNGAWCAEKKNQIDFYNNRFVGVDIPTPESFAP VAIAMGAEGIRVSKAEEVGPALKRALDSRKPTVLEIVCDGTQLAPPFRKDALKLPTRL LPKYKSLDVRNW" gene 212058..213590 /locus_tag="Dhaf_0190" /db_xref="GeneID:7257151" CDS 212058..213590 /locus_tag="Dhaf_0190" /inference="similar to AA sequence:KEGG:RPE_3204" /note="KEGG: rpe:RPE_3204 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456694.1" /db_xref="GI:219666259" /db_xref="GeneID:7257151" /translation="MYSPVSMNERILCTQWLRRIQRKGKVNMGASTSANKNTSGETDA KIIVEELILKARKAMAEIQNYSQDQANTLVQAVAWAIYRQDHAEELARISVQDTGLGN VKDKITKNKRKTFGTLRDLLAPEAKSVGIIKVDEAIGITEIAKPVGVIAAAVPSTNPG ATPANVTMMGLKGRNAVIIAPSPKGASTTVKLLEYIHAELAKVGAPLDLVQSLPMPVS KELTTELMKQADMVTVTGSANNVRAGQTCGTPNACVSAGNVVTIVDASANLQDAAHKI MLSKTFDNATSCSSDNALVIEAAIYEQMIEALKKEGGYKCTVAEKEQMQKAMWDENGK RRGKTTAKDASVMAQEAGLTNPAAQKASFFMVEETGVGKGYPFSGEKIALVLTLYKAG DFDEALELTKRILNHAGRGHSCGLHTTNEEHIQRIGLEMEVCRLLINQIQCFGNGGSF NNGLNFTLSMGGGTWAGNNIKDNLSYQHFIQTTKVSRLIPEVIPEEEELFGSYWAKYG RS" gene 213605..214723 /locus_tag="Dhaf_0191" /db_xref="GeneID:7257152" CDS 213605..214723 /locus_tag="Dhaf_0191" /EC_number="6.2.1.5" /inference="protein motif:PRIAM:6.2.1.5" /note="PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: iho:Igni_0086 succinyl-CoA synthetase (ADP-forming) beta subunit" /codon_start=1 /transl_table=11 /product="Succinate--CoA ligase (ADP-forming)" /protein_id="YP_002456695.1" /db_xref="GI:219666260" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR005811" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR013650" /db_xref="InterPro:IPR017866" /db_xref="GeneID:7257152" /translation="MKLFEYQAKELFAESGIPIPQNALIGDISELNSALEKIGLPCVL KAQVLQGGRGKAGLVKFVRTKEEAQKEAERILEATGKKLLVEEAVPYEREMYVSITVD AASGLAMVMACLEGGVDIEQIARTTPEKIIKEKVDMSLGLMAYQADNIMYGLGLEQSA AKEGSKILLKLYQLFVKYNAELVEINPLMILRDGTMAAADGKFNLDDNALYKQNRFSL TRDHYKSDFEYEAALDGIPYIAFEGDIGMMVAGAGLANVVLDLIHYYGGTVANYLEFG GPNYHKAQQCMKMMLKAKPKCILIATFGTIARADVMAQGIVEAVKELKPEIPIVAVIR GTGEEDAQKLLRSAGLPSLSDTEEAVRKAVEIVGGAEN" gene 214720..215598 /locus_tag="Dhaf_0192" /db_xref="GeneID:7257153" CDS 214720..215598 /locus_tag="Dhaf_0192" /inference="protein motif:PFAM:PF02629" /note="PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: hbu:Hbut_0202 succinyl-CoA synthetase alpha chain" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_002456696.1" /db_xref="GI:219666261" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR005810" /db_xref="InterPro:IPR005811" /db_xref="GeneID:7257153" /translation="MSIIIDHTTPVLIQGITGKEGSFWAKHAKNYGTHIVAGVTPGKE GQDVDGIPVYHTVRRAVQEHPIEASLLVVPPKAAKGAVLEALDSGIKVIVVTAEGIPL HEMMQLRKIALEKQAMVIGGNTTGIISTGKAMMGFFPYWLDRVYKPGRVGVMTRSGSL TNEVTAEIVKAGFGPSSIVGVGGDPVPLTRFAEILPLFEKDPDTDAVVMIGEIGGTME EDVAEAIEQRIFTKPLIGFMGGRTAPKGQKMGHAGAIITAGKGTVEDKVEALAKAGAL VADRPSMIGQLLQKVL" gene 215751..217247 /locus_tag="Dhaf_0193" /db_xref="GeneID:7257154" CDS 215751..217247 /locus_tag="Dhaf_0193" /inference="protein motif:TFAM:TIGR00785" /note="TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mta:Moth_2267 sodium/sulphate symporter" /codon_start=1 /transl_table=11 /product="anion transporter" /protein_id="YP_002456697.1" /db_xref="GI:219666262" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7257154" /translation="MSINSPVVPSRPYVFNKRNALIFFAAIAVMLIIYLLPSPPSFYK GTEEIPLTFEGKAVFAVLVYAVILWLTEAIPFPITALSMIIILHLMGVSTFTALVKTG LGSSVLFFLMGAMGLSAAITVSGLANRIMLGVLSKVGTRTDRIVFTFMALGTFLSMWV TDMAVAAMLLPLGVNILRQSGCKPLQSNFGRCLMIGIVYGALIGGTSTPAGCGANILA ISYLRELTEADASFLQWMIVGVPGALMMLPAGWFLLMKVFPPEIRNVPIELDDVRRQN KELGPLTRQERNTTIVFFTAVTMWLGAPLIKSLTGISIPEDFTALFAFLLLFLPGLQV FGSWKEANEHIDWSGLMLIAGGIAAGMLLAETGTARYIAWGALNGIGALHPMLRVAAV LVLVEALKIFFSSNSVTGAVVIPLVIALALDLGMNPWIVAGPAGIATSMAFIMVTSSP TNVIPYSSGYFSIKDFAKCGVLMTVIGIVAVTLSVAIFGRFAGMNIWL" gene 217448..218164 /locus_tag="Dhaf_0194" /db_xref="GeneID:7257155" CDS 217448..218164 /locus_tag="Dhaf_0194" /inference="protein motif:PFAM:PF07702" /note="PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: drm:Dred_2758 UbiC transcription regulator-associated domain-containing protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002456698.1" /db_xref="GI:219666263" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:7257155" /translation="MVLDPHNPLPLHAQITNILRKRIFEENLTGKIPSERELMDYFAV SRSTVREAIEALVRDGILEKKHGKGTFVAVRPIKEEWIGTFSSYTETIERAGMRSGAK LLSCNIKREPAYIAEMFGGEEFYMIKRLRYANDQVIAIERKCFDLETGRRLLDYDLNA NIYKIMESSLGIVLWEADEIVTSAIPSKEDALLLEVPKRSSVLVTERSSFDSDHKLIE FVQTMFRADKYSFRIKMSRN" gene 218331..218987 /locus_tag="Dhaf_0195" /db_xref="GeneID:7257156" CDS 218331..218987 /locus_tag="Dhaf_0195" /inference="protein motif:PFAM:PF02310" /note="PFAM: cobalamin B12-binding domain protein; KEGG: tma:TM0268 5-methyltetrahydrofolate S-homocysteine methyltransferase" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002456699.1" /db_xref="GI:219666264" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7257156" /translation="MHNVADLVENVIQGNAKESVSIARDLLAKGYRINQLVEGLTTAL DSLDAKCNMNQFNLLEILLAARAMKEVVDEVVCPEMEKLPAEFGPLQLKGVFVMGTIQ GDIHDLGKNIVTTLLRTVGYKVIDLGKDVSPAQFVMAAKAEKADFIGVSSLIFSSAAV IREIKRLLREEKMSDIMVIAGGAAVKQLGKEDLDVDMIAKDAFELIRFLQAHEGNVAE" gene 218984..219991 /locus_tag="Dhaf_0196" /db_xref="GeneID:7257157" CDS 218984..219991 /locus_tag="Dhaf_0196" /inference="protein motif:PFAM:PF01208" /note="PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: cth:Cthe_2785 MtaA/CmuA family methyltransferase" /codon_start=1 /transl_table=11 /product="Uroporphyrinogen decarboxylase (URO-D)" /protein_id="YP_002456700.1" /db_xref="GI:219666265" /db_xref="InterPro:IPR000257" /db_xref="GeneID:7257157" /translation="MNSLQRLEAALAGHAFDEALCIPLVFGGAAFLTDVKLKRYLQNG EILAQCQLDSQQKFDYDAVFVYGDNCIEAEALGSRVYFPENAYPYIEKYRLEDPRQLK DLPDFNPSTDGRMPELLRAVALLKTELGDSLPIAGVVLGPMSIASQLMGLERLLYLLL DSPCEFADIIRFASGITLKAGLALLAQGAHISAVIDPSASQSILPSEMFGRYLLPTIR DIFSQFKGAGAMASWLVITGNSQGLLPYYRQCGVDIAGIDYEVPLAEALKWEGDFLIS GNIKPYRFVNQTPQEIIREGKELISLAAGRRFILSSGCEVPLDTKPENLAALIKAVRD V" gene 219984..221294 /locus_tag="Dhaf_0197" /db_xref="GeneID:7257158" CDS 219984..221294 /locus_tag="Dhaf_0197" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sat:SYN_01364 signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002456701.1" /db_xref="GI:219666266" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7257158" /translation="MCDRMDVKQNTALSSEEELKKQIAALHKINNMTGFLPIKIEELL PAIKEVMEDIFADYQCNFNIFPKRHGCNRLELGDCKAIRDQLPMISDQDQTCPCCTGE ACRGIFHSHVCVPLVSGKEVFGVMTLKSLLKVRLSRDSLEMLLAIANQVAATLQRSQL LNRLAQEKNNLEEANQEITQLNRSLFDTIKELEKTQRQLIYSERLAAAGRLAANLTHE INNPTGIILSRLEWLLLEAPETELPEEVVKDLLVIKKHTERIAQTTRGLLSFSRRTKN ETTLVDLENLIKETVVWLERQFSRKDIIIVLNLSRLPTVIGNKDQLEQVLVNILTNAK DALPEGGKIKITTKYDTEKNNVQIDIEDNGTGIPEDMMNSIFDPFFSTKEKELGTGLG LPISLTIMKEHGGFLRMESTPHEGSCFSMILPCVPENQEGDLNE" gene 221287..222672 /locus_tag="Dhaf_0198" /db_xref="GeneID:7257159" CDS 221287..222672 /locus_tag="Dhaf_0198" /inference="protein motif:PFAM:PF00158" /note="PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_1428 two component, sigma-54 specific, fis family transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component, sigma54 specific, transcriptional regulator, Fis family" /protein_id="YP_002456702.1" /db_xref="GI:219666267" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7257159" /translation="MSEDRHIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEI YRLQPDLIITDIKMPQCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDY LSKPFPIEQLQLTINKALQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIG KISNSDASILILGESGTGKEVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYE RGAFTGANTTKQGLLEMAHGGTLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLIN IDIRVLAATNRDLEKAIRAKEFREDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKF SQDMNKKVSGFTPEAMQAMKSYAWPGNIRELRNVVERAISLSGSEMVEISDLPEKVIG GQKKILPEQENLGAFSFHEAKDICLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTI HRLINKYDLQR" gene complement(222673..223224) /locus_tag="Dhaf_0199" /db_xref="GeneID:7257160" CDS complement(222673..223224) /locus_tag="Dhaf_0199" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bld:BLi01431 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456703.1" /db_xref="GI:219666268" /db_xref="GeneID:7257160" /translation="MGKATIKIIFSLAASLVLFVSGCSSGQEPGSAPITPQEKPEIEV FSKTMELNKIVDLDTMKLRIINVSLVRNTDPDPDAPLGKIALGIEIGNTSDKDVLFYP EDFEMTIDGKEIASPDLTLTSSLGGTYPPQRVQQGFITFPIKEKEVTSVKELHLTIPP TTDQDGIATEAKEYTILIDDLEA" sig_peptide complement(222673..222753) /locus_tag="Dhaf_0199" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.971 at residue 27" gene 223613..224815 /locus_tag="Dhaf_0200" /db_xref="GeneID:7257161" CDS 223613..224815 /locus_tag="Dhaf_0200" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: sth:STH855 ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002456704.1" /db_xref="GI:219666269" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7257161" /translation="MFAKLIWRNAKRRLWQQGLTLFVVVACAAALTAGILLVWGIEKG GQSAVDNLGADVMAIPADAHLEPGQVLFTGAPANIYMNSEVLKEIEKVPGVEAISAQF FSQTLNQGCCSLPEEYRLVGYDPQTDFLIRDLLAKGVGRDLKNTEVIVGGNVPAFLGD RVVVLAEPFDVAGYLEPMGGSIDDTIFVPIATARRLAGKSPYLQEYWQEAGSPEQLVS SVLIKTKDGADPNQVAKAIDRISGIKSVAAGKLFSELKEELLVIKEILRLLVVIICGI TMASLASRYSSLVLERQQELALLRALGTERGNLFKLVMLETLCSGLAAAVMGCLAGYG LVLYLAKSLSKHSSFPFMLPGAAQLCAAGLGIIAFVLLICCLAAFWPARSSSRLDPVT ALTEGELR" sig_peptide 223613..223711 /locus_tag="Dhaf_0200" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.408 at residue 33" gene 224824..225537 /locus_tag="Dhaf_0201" /db_xref="GeneID:7257162" CDS 224824..225537 /locus_tag="Dhaf_0201" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1672 antimicrobial peptide ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456705.1" /db_xref="GI:219666270" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257162" /translation="MEISLKNITHYYRDGTGDQVTPLRNIDLTMRSGDSLVLYGPSGC GKSTLLFILGCLLRPSEGQVDIDGRSLLHYGEKELAELRNRKMGFMFQACYLLPTLTV KENIMLPFWIQGGKARDGRTEKKTVELLLEQLELTERADFLPYQLSGGQRRRVAMARA LANDPEVILADEPTAELDEEKKDFVGKWLGEQAGKKKIVVVATHDPQLAVYAGRVYSL SQGQLQEKILGKGAVYSSG" gene 225569..226024 /locus_tag="Dhaf_0202" /db_xref="GeneID:7257163" CDS 225569..226024 /locus_tag="Dhaf_0202" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mbn:Mboo_2005 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456706.1" /db_xref="GI:219666271" /db_xref="GeneID:7257163" /translation="MEVKLLNGKVTKVIGGLGAALGLLTALTPFQLAPVCQRLLELTS GKMTHMRCHYTGQGEVFLGIVVVLVSLIYLFNTSIPAQKALGGVLMILGCAVIILPTN LGIGVCMNPMECHTTARVLYVLGSLTIIDGLVAVFQEKLPVSPSKDIKA" gene 226074..226391 /locus_tag="Dhaf_0203" /db_xref="GeneID:7257164" CDS 226074..226391 /locus_tag="Dhaf_0203" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mrd:Mrad2831_4216 putative sulfite:cytochrome c oxidoreductase subunit B" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456707.1" /db_xref="GI:219666272" /db_xref="InterPro:IPR009056" /db_xref="GeneID:7257164" /translation="MRGLVTGKLSKALGLNMVVVGLVMGFALFASYAVPLPEKAEAAG QAGYLTFQSTCTACHTVDTVQNYQGSSTWPEIIGLMKGYGAFMQEEEEAEILQYLEEA YPR" sig_peptide 226074..226175 /locus_tag="Dhaf_0203" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.908 at residue 34" gene 226426..226659 /locus_tag="Dhaf_0204" /db_xref="GeneID:7257165" CDS 226426..226659 /locus_tag="Dhaf_0204" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456708.1" /db_xref="GI:219666273" /db_xref="GeneID:7257165" /translation="MSFFNEEGDKEGFVVLALGIWAAITLVFMIARSWAAGNAYWVAI FMGLICFAAAFSVYTWRVLILDRKGGMENGEQQ" gene 226643..227089 /locus_tag="Dhaf_0205" /db_xref="GeneID:7257166" CDS 226643..227089 /locus_tag="Dhaf_0205" /inference="protein motif:PFAM:PF00355" /note="PFAM: Rieske [2Fe-2S] domain protein; KEGG: hmo:HM1_0699 Rieske iron sulfur protein subunit of cytochrome bc complex PetC" /codon_start=1 /transl_table=11 /product="Rieske (2Fe-2S) domain protein" /protein_id="YP_002456709.1" /db_xref="GI:219666274" /db_xref="InterPro:IPR005805" /db_xref="InterPro:IPR005806" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7257166" /translation="MENNNKGEISRRKFLGIMTGVPLVLSVGTPAVAVGKMISPPEAL RPLPPRMAILKEDELLEKPKEIIYDGLPAMIFKKGNEYRAFSRVCTHLGCTVMWNEAE KRFECPCHGGIFDEDGNVLEGPPPKPLTRLRAWVEDGYVMVQREVV" sig_peptide 226643..226744 /locus_tag="Dhaf_0205" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.925) with cleavage site probability 0.904 at residue 34" gene 227091..227729 /locus_tag="Dhaf_0206" /db_xref="GeneID:7257167" CDS 227091..227729 /locus_tag="Dhaf_0206" /inference="protein motif:PFAM:PF00033" /note="PFAM: Cytochrome b/b6 domain; KEGG: hmo:HM1_0698 cytochrome b6 subunit of cytochrome bc complex petb" /codon_start=1 /transl_table=11 /product="Cytochrome b/b6 domain protein" /protein_id="YP_002456710.1" /db_xref="GI:219666275" /db_xref="InterPro:IPR005797" /db_xref="GeneID:7257167" /translation="MAIEPKEVGVKDMFKEIAEHPVPRHARNFIFCFGGISFLLFLVQ VVTGIVLAVYYNPTMEGAYQSVMFINDEVFMGKALRSVHNIAANLMLIMVVLHFLRVV FTGAYKPPRQFNWVVGVLLLLLVILFCFTGYLLPLDQVGYWAAIIGTKILGSIPIVGD QLLLLGQAGTKITDHTLMRFFIIHIVVLPVVVIVLLIAHFLMIRKQGISGPL" gene 227742..228137 /locus_tag="Dhaf_0207" /db_xref="GeneID:7257168" CDS 227742..228137 /locus_tag="Dhaf_0207" /inference="similar to AA sequence:KEGG:HM1_0697" /note="KEGG: hmo:HM1_0697 subunit IV of cytochrome bc complex petd" /codon_start=1 /transl_table=11 /product="subunit IV of cytochrome bc complex petd" /protein_id="YP_002456711.1" /db_xref="GI:219666276" /db_xref="InterPro:IPR005798" /db_xref="GeneID:7257168" /translation="MDINKKELDKDTVPFFPNHLTTEVSVALGILGVVFFLAGVIPKD LGPPANPVMTPAHIEPDWYFMWLFGLLKIVPQLLGLLIPALLVVGVILLPWLDKSTSR RPEERPWVIIGAEIVLILMVVLTYIALHF" gene 228195..228734 /locus_tag="Dhaf_0208" /db_xref="GeneID:7257169" CDS 228195..228734 /locus_tag="Dhaf_0208" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: gtn:GTNG_1735 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456712.1" /db_xref="GI:219666277" /db_xref="InterPro:IPR009056" /db_xref="GeneID:7257169" /translation="MTGNGRNNPSFHLLSIFCIWLGMGFLVGITGSVIAAPHYVLPDD REAKLVYASGLQPQQSAGTQSSEPSGASGTAREGELFLKKGCTQCHEVSYYGIAGGVT GPDLTKAYGDVPDRFGKTLAEFLQEPEGTMAEMFVRMDITDDEKNQVLELLTAAGGET AQQPAGEENESTENTNNPE" sig_peptide 228195..228302 /locus_tag="Dhaf_0208" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.895) with cleavage site probability 0.875 at residue 36" gene 228787..230685 /locus_tag="Dhaf_0209" /db_xref="GeneID:7257170" CDS 228787..230685 /locus_tag="Dhaf_0209" /EC_number="1.7.99.6" /inference="protein motif:PRIAM:1.7.99.6" /note="PFAM: cytochrome c oxidase subunit II; KEGG: gtn:GTNG_1734 nitrous oxide reductase" /codon_start=1 /transl_table=11 /product="Nitrous-oxide reductase" /protein_id="YP_002456713.1" /db_xref="GI:219666278" /db_xref="InterPro:IPR002345" /db_xref="InterPro:IPR002429" /db_xref="GeneID:7257170" /translation="MEKGLFKKIVLSLAGLLVGLVIAVYLSAQLNPEAEAAAAFGGKN ISVDGVPDDVVQAALKTYVPPGQLDEYYMFASGGHSGNVFVYGVPSMRRIRTIPVFTP ESAVGYGWTTESKEMLGEWSWGDVHHPALSETKGDYDGRWLFVNDNANSRAARIDLDS FRTSQILDIPNIYGPHSAVFMTPNSEYFMLGSRFAGPIPYGTYSPIENLSKDYNCVLA AVAIDPNNGEMSVGWEVLMPPWSFDLSDAGKLDSEGWAFLTTYNTEEAYELLEVNASQ REMDYVVALNWKMLEQAANEGKYKIVDGVKMIDPLDVPGSVYLVPAMKSPHGVDVTPD GKYFIANGKVAPVATVFSFEKFKECIDNKDFQGEERGFPVVNYEKVRVAEVPVGLGPL HTQFDGNGYAYTTLFIDSTIAKWSLDTFEVVDVTPVHYCPGHLCAAEGDTVSPDGKYL VSLNKLAKDKFLSVGPSHPESAQLIDLTTDKMKILMDVPTDPEPHFAQMIKADKITTW EVFEKDPSQPGAVYEKENARIERDGNNVTVYQMGFRSRYYPDHVEVNEGDHVTWYLTN TDFDEDITHGFGICLYDLNAEAQPGETIKFEFVADKAGVYPFYCTNFCSALHQEMQGW FIVKPKGL" sig_peptide 228787..228873 /locus_tag="Dhaf_0209" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.957 at residue 29" gene 230772..231371 /locus_tag="Dhaf_0210" /db_xref="GeneID:7257171" CDS 230772..231371 /locus_tag="Dhaf_0210" /inference="similar to AA sequence:KEGG:GTNG_1733" /note="KEGG: gtn:GTNG_1733 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456714.1" /db_xref="GI:219666279" /db_xref="GeneID:7257171" /translation="MDFVRKLFKGNLNLIGRIMFGAAGLILLASLFLPWWHLDLVAPQ YPEGLSVIVYPDKLDGRIDIINNINHYIGMKWISEEDFPEFQVITKVAYVIIGLALIT ALVKKRWLAWLTAGLGAVGGMIGVYDLWRWLRDYGTQLDPMAAIKIDPFTPPIIGTNK LANFITYTGFNSGGYLLGLSIILMLLAAWRFKEHEKQKE" gene 231352..232857 /locus_tag="Dhaf_0211" /db_xref="GeneID:7257172" CDS 231352..232857 /locus_tag="Dhaf_0211" /inference="protein motif:PFAM:PF05048" /note="PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: ade:Adeh_2400 periplasmic copper-binding, NosD" /codon_start=1 /transl_table=11 /product="periplasmic copper-binding" /protein_id="YP_002456715.1" /db_xref="GI:219666280" /db_xref="InterPro:IPR006626" /db_xref="InterPro:IPR006633" /db_xref="InterPro:IPR007742" /db_xref="GeneID:7257172" /translation="MKSKKNRRCFWLSLFLFLWIIPLSAHAATLEVQGGGSAESIQSA LARAAPGDTIHVYSGTYVGKIVIDKAVSLIGIGMPILDGGGEGDVVSIKGDGVTFKGF QVMGSGKRLQDSDAGIKLYSAGNVIEDNKLTNNLFGMYLLKSPHNTLRNNTIIGRPAK NKLQASKKDEAGEAGTYDILPSFEGESGDGIHLFAASHNLIENNEITDTRDGIYFNYA HDNRLLYNHIDGVRYAIHYMYSDDNYFEGNIATNNVAGAAPMYSKRITFRENVFAYNR GHRSFGVLFSNCNDCLAEGNVFFGNTRGALFDVSYHNIFRNNLVAANDIGIDLISSSG FNTFTENNFMDNMEQIAFRAGRIGEGNVFYEEGTGNYWNDYRGFDLDQNGIGDTPYLT GDIFTYLMNKAPAVRLFLNSPAAKALEFAENMFPVIEIPKAEDAYPLIKPVAIEINGQ FHIEKNQVSNKVFGAYSLLMLLIAGMITARAFGVSSQGIKRVENYLRGGQK" sig_peptide 231352..231435 /locus_tag="Dhaf_0211" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 28" gene 232854..233396 /locus_tag="Dhaf_0212" /db_xref="GeneID:7257173" CDS 232854..233396 /locus_tag="Dhaf_0212" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_0192 lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456716.1" /db_xref="GI:219666281" /db_xref="GeneID:7257173" /translation="MSRKIMVVLLSLWCLFLTGCSSGDAAGTPREIDPTIDICPVCRM SVIDEHFAAQIIDSQGQVEIFDDIGCMSIFMRRLEAGAQDSILATYVKDFQNMEWIQA QEAFYVQGRIDTPMSFGIVAFAAEETARKFAQEVGGKQLTWEQVLTEPLTIGLDIEFN QEDFNVQDLDTGEMREERGN" sig_peptide 232854..232931 /locus_tag="Dhaf_0212" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.880 at residue 26" gene 233397..234233 /locus_tag="Dhaf_0213" /db_xref="GeneID:7257174" CDS 233397..234233 /locus_tag="Dhaf_0213" /inference="similar to AA sequence:KEGG:BTH_I2322" /note="KEGG: bte:BTH_I2322 membrane protein NosY" /codon_start=1 /transl_table=11 /product="membrane protein NosY" /protein_id="YP_002456717.1" /db_xref="GI:219666282" /db_xref="GeneID:7257174" /translation="MQLINVVTIAEKELLESIRSKWLGTFTVVFALIALLVSFFGLSS LGVGGQQGFNRVTASLLNLVLYLLPLIALVMGSATVAGEKEAGSLHVLLTQPIDKAEV IIGKFGGLALALIASILVGFGGAGVVIAWKTGSINITDYLMFVSLSMILAMVFLSIAI LISVIVSRRAQGIGLGIFIWFLMILVYDFLAIGVAGLSNVSVIIPLLLLLLLANPADM VRVLVILQLGGEETFGPTLVALTRMLTQGSGELLLYGALLIWMIIPLLIAAILFGRKQ DY" gene 234245..235156 /locus_tag="Dhaf_0214" /db_xref="GeneID:7257175" CDS 234245..235156 /locus_tag="Dhaf_0214" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3201 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456718.1" /db_xref="GI:219666283" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257175" /translation="MEVINTLEVKYAQKFYGPFQAVKDINLTVEKGEIYALLGHNGAG KSTLIKMILGLVKASAGMIEIEGLNYDAKNKEIKKRVGYLPERMNFYDNLTAWETISF YAKLKGITRKRCEEVLEQVGLREAEHRRVGTFSKGMQQRLGLAQAIIHKPDLLVLDEP TTGLDPIGILELKAMIRNWNKEGTTILFSSHNLNDVEELAQRIGIMNRGEMIAQGSLA ELQDRLGLPTKIKIDLAVIPVDLEEILVGKRIKTFQLEEKTVSIDCPKDKKTQVITAV MDGMLKVLDLRLEEPGLNSIYQNIMAE" gene 235271..235867 /locus_tag="Dhaf_0215" /db_xref="GeneID:7257176" CDS 235271..235867 /locus_tag="Dhaf_0215" /inference="protein motif:TFAM:TIGR00168" /note="TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: hmo:HM1_1789 translation initiation factor IF-3" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-3" /protein_id="YP_002456719.1" /db_xref="GI:219666284" /db_xref="InterPro:IPR001288" /db_xref="GeneID:7257176" /translation="MLAHDLYGRRVELCPSFLCDFFWRWFVISKDLRINDEIRAREVR LVGEEGEQLGIVQLRDAQRIAAEKSLDLVEIAPTAKPPVCKIMDYGKYKYEQAKRDKE ARKKQKTMEIKEVKLRPNIEDHDFETKARNAQRFLNDGDKVKVTIMFRGREVTHPELG RTLCLRLAEFCKAEANIERDPKLEGRNMIMILAPVKHD" gene 235888..236085 /gene="rpmI" /locus_tag="Dhaf_0216" /db_xref="GeneID:7257177" CDS 235888..236085 /gene="rpmI" /locus_tag="Dhaf_0216" /inference="protein motif:PFAM:PF01632" /note="PFAM: ribosomal protein L35; KEGG: aoe:Clos_1977 ribosomal protein L35" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L35" /protein_id="YP_002456720.1" /db_xref="GI:219666285" /db_xref="InterPro:IPR001706" /db_xref="GeneID:7257177" /translation="MPKMKTHRGAAKRFKKTGTGKIVRHHAFTSHILEKKSPKRKRNL RKGTVMHKTDAKRIARLVAYL" gene 236192..236554 /gene="rplT" /locus_tag="Dhaf_0217" /db_xref="GeneID:7257178" CDS 236192..236554 /gene="rplT" /locus_tag="Dhaf_0217" /inference="protein motif:TFAM:TIGR01032" /note="binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L20" /protein_id="YP_002456721.1" /db_xref="GI:219666286" /db_xref="InterPro:IPR005812" /db_xref="InterPro:IPR005813" /db_xref="GeneID:7257178" /translation="MARVKRGVTKHQRHKKVLKLAKGFRGAKSKLYRPANEQVMKSLA YAYAHRRDKKGDFRKLWIARINAAARLNGLSYSRMMNGLKIAGVSVNRKMLADLAIND AAAFTELVNVAKAQVSAK" gene 236612..237427 /locus_tag="Dhaf_0218" /db_xref="GeneID:7257179" CDS 236612..237427 /locus_tag="Dhaf_0218" /inference="protein motif:PFAM:PF00588" /note="PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: drm:Dred_1618 tRNA/rRNA methyltransferase (SpoU)" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase (SpoU)" /protein_id="YP_002456722.1" /db_xref="GI:219666287" /db_xref="InterPro:IPR001537" /db_xref="InterPro:IPR013123" /db_xref="GeneID:7257179" /translation="MLTSLQNEQVKYVVNLHKRKFREENGEFLIEGWRFVEEGLARGA HLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGILAVVKQSR WTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLY NLKVLRSTMGAIFSLNIVTHCQPEEILKVCRSHKIPVFVGDVEGTDLYETHFAQPMAL VVGNEGNGPSAAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRMTSTT" gene 237958..238980 /gene="pheS" /locus_tag="Dhaf_0219" /db_xref="GeneID:7257180" CDS 237958..238980 /gene="pheS" /locus_tag="Dhaf_0219" /inference="protein motif:TFAM:TIGR00468" /note="catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase subunit alpha" /protein_id="YP_002456723.1" /db_xref="GI:219666288" /db_xref="InterPro:IPR002319" /db_xref="InterPro:IPR004188" /db_xref="InterPro:IPR004529" /db_xref="InterPro:IPR006195" /db_xref="GeneID:7257180" /translation="MKQEVHRIQEETLAELQQVSTLEALQELKVKVLGKKGSLTAQLR KMGGLSPEERPIFGQVVNETRDILEAAWVRREEELSQAAMLKQLEEEKLDISLPGVSL PRGHQHPLTKVIEEIEEIFLGMGFQIAEGPEIESDYYNFEALNLPKDHPAREMQDSFY ITEEILLRTQTSPVQIRTMEKQRPQLPVKIICPGKVYRNDDDATHSPMFHQVEGLMVD RGIRMSDLKGILLSFSRMMFGESREIRLRPSFFPFTEPSAEVDVSCMLCGGAGCRICK GTGWIEILGSGMVHPRVLEMGGYDSKELTGFAFGMGVERIAMLKYGIEDMRLLFDNDL RFLQQF" gene 238993..241398 /gene="pheT" /locus_tag="Dhaf_0220" /db_xref="GeneID:7257181" CDS 238993..241398 /gene="pheT" /locus_tag="Dhaf_0220" /EC_number="6.1.1.20" /inference="protein motif:TFAM:TIGR00472" /note="catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase subunit beta" /protein_id="YP_002456724.1" /db_xref="GI:219666289" /db_xref="InterPro:IPR002547" /db_xref="InterPro:IPR004532" /db_xref="InterPro:IPR005121" /db_xref="InterPro:IPR005146" /db_xref="InterPro:IPR005147" /db_xref="GeneID:7257181" /translation="MKVSLEWLREYVDIAQTAEDLAESLTRGGIEVGGVEYLNQGLEA VVVGEITRMEHHPNADKLWICEVNLGDRSTTIVTGAQNLLVGDRIPVALPGTTLPNGV HIEVSKLRGVESSGMLCSTEELHLDSGLGDPRSEGGILILEKETPLGATMDTVLGEGD CVLDLELYPNRPDCLGMVNVAREVASLTGEALHLPAWAEGSQGPDYPGDPKARIVLDD PGLCQRYAGLVVEDVNIEPSPEWMQKRLKAAGVRPISNIVDITNYIMLEMGQPLHAFD RDAIAGAVHVRRARAGEKLVTLDDIERELDPEMLLIADDEKALGLAGVMGGLNSEITD STKRIFVESAHFSSVSIRRTSRRLGLRSEASNRFEKGVNPHGVAATLGRVAELVIQLG AGKPVGFVEQAGQLPEPAAVSLTVEKTNSLLGTALTEEEITGVLKRLRFPYQEKDRGY EVQIPTYRSDITIEEDLIEEVARLTGYDRIPTTLPQGDQTQGRRTPEQEFKRTLRHLL VGLGLNEVMTYSFTRPDADRQFGDMDQAIPLLNPLREELSVMRTALLPSIMEIAARNI SRRNLDIRLFEMGSIYKSKERPLVRLPQEELHLAGVIWGKSSRHWLTPVTEYDFYTVK GILEEVAREFGLEFDYRLPNNQELTHPGRSADIYLNGVKIGLMGEIHPALGKEWELER ALIFELAVAPMLEAGNRTIRAFSIPKFPAMQRDLAVVVPLEVSAQDVMKRIKELGGTL LVQVNIFDVYTGKPIPEDRKSLAFALKYQALDRTLKDEEVNALNQQVLEGIEKEFGAA WRK" gene 241421..241678 /locus_tag="Dhaf_0221" /db_xref="GeneID:7257182" CDS 241421..241678 /locus_tag="Dhaf_0221" /inference="protein motif:PFAM:PF05164" /note="PFAM: protein of unknown function DUF710; KEGG: nth:Nther_1815 protein of unknown function DUF710" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF710" /protein_id="YP_002456725.1" /db_xref="GI:219666290" /db_xref="InterPro:IPR007838" /db_xref="GeneID:7257182" /translation="MAEENEKVIVEIFGEKHVIRGQESPEHILKVAREVDKKMRLIAQ RTPRLAIHQIAILAALNLADELEKIKEEQETLMQLIEAQEE" gene 241850..242212 /locus_tag="Dhaf_0222" /db_xref="GeneID:7257183" CDS 241850..242212 /locus_tag="Dhaf_0222" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_2961 dinitrogenase iron-molybdenum cofactor biosynthesis protein" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002456726.1" /db_xref="GI:219666291" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7257183" /translation="MKIALPSRQNRIDDHFGHCEYFTVFSVDEGKKELVDQETVSSPV GCGCKSNIAQTLAEMGVTLMLAGNMGEGAVRVLSNSGISVIRGCSGEVKSVAQQWLEG TLEDSGDSCHEHEHSCQH" gene complement(242356..242736) /locus_tag="Dhaf_0223" /db_xref="GeneID:7257184" CDS complement(242356..242736) /locus_tag="Dhaf_0223" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tfu:Tfu_0574 DNA-directed RNA polymerase specialized sigma subunit sigma24 -like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456727.1" /db_xref="GI:219666292" /db_xref="GeneID:7257184" /translation="MNKKTSRFLLLMTLFLGLSLGIFFNAATTNAYPDMSEDGVTCTP CHEEGEHGGSGEPATEPEPAPPAPAPVQPTPSPQEPAQESPQVAKEQPDSADTTGAVS PALIVGVVVLLLLAVYLFAFKKHK" sig_peptide complement(242356..242451) /locus_tag="Dhaf_0223" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.751 at residue 32" gene complement(242772..244391) /locus_tag="Dhaf_0224" /db_xref="GeneID:7257185" CDS complement(242772..244391) /locus_tag="Dhaf_0224" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002456728.1" /db_xref="GI:219666293" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257185" /translation="MENMNRRNFLKKATVGAAALAGASMLTACGTPETVKPNSDASPA GRSWDYEVDAVVVGGGHGGLCAAATAAERGKKVLLVEISGIVGGGSAWSGGILHTFGT QTYEEYMEYSEGLHDPVLGKLFFETFKGEFMPWVQNTVGAPVYIMGPQAGPNGRPQDK VPNSIGDKEWKMGTKEDKGYAGLRNYFKAIEDYVKAKGGTVLLKTRGLNLITDGEKVV GLKIVTQGEEPKYVKAGAVILATGNFFANKGLLTQFVGPYAYRTKVMGVPYATGDGLR MGQGVGAMLSEGLSTWSGTLVCVTHNNAVTDDPAAYEKIIETDPNSMAGINKGRPNPP WFGTGTVLPELVPAIVVNLNGKRFKDEAHPIDSKYPRLTDAVLVQPEGMAFVIGDQAM YDANPSTSAMMKIIKDEGVKVIEGATLEEFAANMEKAGVYKANLLKTIREYNAAIDKG TTMELEVPREYNLNKISTPPFYGVPVTGQIYCNFGGLAINENVQVLDHQKQPIPGLYA VPPAAGGVMRSIYTGSIALAGTFGWLAGKQI" sig_peptide complement(242772..242858) /locus_tag="Dhaf_0224" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.787 at residue 29" gene 244546..245487 /locus_tag="Dhaf_0225" /db_xref="GeneID:7257186" CDS 244546..245487 /locus_tag="Dhaf_0225" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2850 LysR family substrate binding transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002456729.1" /db_xref="GI:219666294" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257186" /translation="MRLEQMEYLISLAETGSITQTAKYFFMSQQGISYSIQQLEKELD VKILHNHRNRVTFTAAGECVLVRARDFVKQYQELQEELQSFQKDKTPSYKARLFLYID PFMANTFLPRILKKLHKQSKIKLATKEQNLTLLLQTLSDPSEVDGIGLVGLTEHYTTE QFKQKFDFEPIHSCHLQVLVSETSPLAKLPALSFEEIAQYPICLFASDYNSEEVGKDL FFGRTVKNLSVILQTTNVDMYRDMVNKNIAIGLTTDYLESFFHKSSLTGIPLKEPIQF HVGFIRRKGRPFSVMDEEFMAIAKDVLNSQLAKKVSQ" gene 245619..246449 /locus_tag="Dhaf_0226" /db_xref="GeneID:7257187" CDS 245619..246449 /locus_tag="Dhaf_0226" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: lsp:Bsph_3517 multidrug ABC transporter" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002456730.1" /db_xref="GI:219666295" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7257187" /translation="MKEQYYSIGQVAKLSNISIPTLRYYDQIDLYKPAHVDTLTSYRY YKESQLYILDMIKSLKYIGTPLTDIKTVLNYTPAELFCFLEHQEDVIEGKIQGLQEIH KNLQQTKKQLQQQMKTALATDVFEKTEDLQIFTLPVENYAPQSIPNDCYGELIKLVEA EGSRISSHYGCIYPLLDYNSMDEVRCTHIFTPLMTDRLNSHPAYRRNIRLISESRFIG IAFQYHPDRYIEHYQRLYHYIRSKELPVADHVYDLFTPTRYSQHKEEEFMVELKVQLL" gene 246568..247740 /locus_tag="Dhaf_0227" /db_xref="GeneID:7257188" CDS 246568..247740 /locus_tag="Dhaf_0227" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lsp:Bsph_3518 multidrug ABC transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456731.1" /db_xref="GI:219666296" /db_xref="InterPro:IPR001958" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257188" /translation="MNEQKTVLALLLMNIFIAFLGIGLVIPVLPTLMRELGVNGTVVG YLTAAFAIAQLICSPFAGKAADKIGRKKVLVTGLFLFGFSEVLFGLGQEIEVLFLARI LGGVSSALIMPAVTAFIADITTLETRPKALGYMSAAINTGFIIGPGIGGFLADFGTRT PFFFAGALGAVAAILSIIFLKEPDRSNEAAEEEVPKLKTSIKRMLAPMYFIAFALILI ASFGLSAFESFFALFVDGKFFFTPKEIAFVITAGALLGALIQVLLFERLARRWGEIKL IRYSLILSGILIFLLTAVHSYVWILVVTTLAFIGFDLFRPAVTSYLSKIAGNEQGFVG GMNSMFTSLGNIFGPIIGGMLFDVDIDYPFYFSVAVMILGVIITLFWKEPSRILQQ" gene 247982..248896 /locus_tag="Dhaf_0228" /db_xref="GeneID:7257189" CDS 247982..248896 /locus_tag="Dhaf_0228" /inference="protein motif:PFAM:PF01676" /note="PFAM: metalloenzyme domain protein; KEGG: sth:STH1114 hypothetical protein" /codon_start=1 /transl_table=11 /product="metalloenzyme domain protein" /protein_id="YP_002456732.1" /db_xref="GI:219666297" /db_xref="InterPro:IPR006124" /db_xref="GeneID:7257189" /translation="MHFVMIFLDGFGLGGDRDNPIMAAHTPYIDELLGGHYLWGQERR IESEQLILIPLDASLDVTGIPQSATGQTTLWTGVNGAKALGFHLNAYPNEKLAEIIKE KSIFKQLADQGKKVTFANTFTSHYDEMIASGKRRHTASTLSALAGGVPLRRIEDLLQG KGVYQDMTNEILRELEQEADIPLITSYEAGKNLGRLALDYDFTLYEFFQTDVRGHKQD WEKAVALIEQIDGFIGGFMSVVRHEDVTWLLTSDHGNIEDFRVKGHTQNPVPALGWSS KPLEWPQWERLEDVTPGIVRMILGTREL" gene 248898..251516 /locus_tag="Dhaf_0229" /db_xref="GeneID:7257190" CDS 248898..251516 /locus_tag="Dhaf_0229" /inference="protein motif:PFAM:PF01136" /note="PFAM: peptidase U32; KEGG: drm:Dred_1637 peptidase U32" /codon_start=1 /transl_table=11 /product="peptidase U32" /protein_id="YP_002456733.1" /db_xref="GI:219666298" /db_xref="InterPro:IPR001539" /db_xref="GeneID:7257190" /translation="MSHIKDAELSSMELLAPAGSYESFKAAVENGADAVYLGGKSFNA RASAANFGLDELRQVVQYAHERETKVYVTVNILIADQEFPELYDYIYSLYEIGVDALI LQDIGVGSMIRSVLPEMERHASTQMTINTTWGVRHVERLGFQRVVLAREVSVEQMKTI SAKTALEIEVFVHGALCICYSGQCLMSSYIGGRSGNRGRCAQPCRLTYQLMNEERKDL LAEANLGNHLLSPRDLNFVEEIHTLKECGVYSLKVEGRMKRPEYVATVTRIYRRALDH VLSQENGVNAGSAVTGEEKTELLQIFNRDFSRAYFHSHPGAELMSYARPNNRGIRLGR IVQNRGNQLEIKLEAYLRPGDGIEVWTSRGREGITVQKVWQGKRESEEGKPGDIVQIE FAGKSHPGDRVFKTHDEQLMEKARQSFQEGKERRKRPLKMRLSGSIGELMALEAWDQD KHVRVDSATPAQQAMKRPLTQEYAFQQLNRLGTTPFWLEELDLEVEEGLMLPVSELNE MRRLVVEGLLHKSFQQEKVTRGEYKQRLKEWQNRLKLEQEEQVQQAQQHKEPLPGSHS KAASLAARRLTVAVSDLEGVKAALKAGARRIALGGERWRSRKGMSWEDIRAGVRLCKE QGANCLLRLPRILNEEQSAWWYEALLKVKAWEDRPWIMVANLGELEMVKDIDPDWPFE VDYPVNIFNEAAVAHLFRLGAQGVTLSTELEHSQIEPLARWPKTEVFAFGELEMMVSE YCPVGATLGGKKGTKCTAPCVKEPHYLRDRLNYDFPIETDLDCRMHLYNVKRLNLYKE LGSIAKMGVQRIRLQLDRANPVQIRDTVRVFLEGWERALAGERISEEQAEKVNGYLAE RFPEGFTKGHYFRGVL" gene 251554..253923 /locus_tag="Dhaf_0230" /db_xref="GeneID:7257191" CDS 251554..253923 /locus_tag="Dhaf_0230" /inference="protein motif:TFAM:TIGR01069" /note="KEGG: pth:PTH_1939 mismatch repair ATPase; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein" /codon_start=1 /transl_table=11 /product="MutS2 family protein" /protein_id="YP_002456734.1" /db_xref="GI:219666299" /db_xref="InterPro:IPR000432" /db_xref="InterPro:IPR002625" /db_xref="InterPro:IPR005747" /db_xref="InterPro:IPR007696" /db_xref="GeneID:7257191" /translation="MVLNERVIRKLDFDKILERLANQCIMPRARELAEQLEPHSHLDL VREALEETGEGKDILRINPLFSVRGAREIRPLVERCLKGGTLTTDELLQIRDTLKAAR IVKQGLQEGKAEVPHLKGIMEQVILPKGIEEEITRCITEDGQVADQASSVLADLRRSI SRLQTRIRETLDGIIRNPAYQKILQDPIVTQRSERYVVPVKQEYRQSFQGIVHDQSAS GATLYIEPMAVVNLGNELREVVLKEQREVQRILLLLSARVEGEAEAIADAHEALARVD FILAKARLSEEMNAGAPILTEKQEISLVQARHPLLTGKVVPLTIQLGTRFDTVVVTGP NTGGKTVALKTIGLLAAMAQCGLHIPAESDSRVGVFTQIFADIGDEQSVEQSLSTFSG HMKNIVEIVEKADWRSLILLDEVGAGTDPTEGSALAMAIIAELHERGARIVATTHYGA LKNFAYNTTRVENASVEFDSETLRPTYRLLIGIPGKSNAFYIAGRLGLPEGVLDRART FVTEREMQVADLIENLEDTQREIDLEKRRAREERQAIEKESLGLKEKSQKLEDDYQEL MAKARDQATEIVREARREAERLIDELKLALKEERKDQQAIEKTRQGIRKLSNKVGDQD TPLRTPHGVEPQEIKLGQMVYMTKLRQKGQVLKLPNDSGEVFVQAGVIKLNVPLSEIR LIQEEKAAKPTRSVGGQGKVGMKKAETIRTEIDLRGMMVEEAGYELDKYLDDAVLTGV GQVYVIHGKGTGALRQGIHEFLRGHHHVKSFRLGQHGEGDLGVTVVELK" gene 254000..254245 /locus_tag="Dhaf_0231" /db_xref="GeneID:7257192" CDS 254000..254245 /locus_tag="Dhaf_0231" /inference="protein motif:TFAM:TIGR01411" /note="TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: drm:Dred_1112 twin arginine-targeting protein translocase" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, TatA/E family subunit" /protein_id="YP_002456735.1" /db_xref="GI:219666300" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR006312" /db_xref="GeneID:7257192" /translation="MVTFAMITPTVAVIALVIALILFGPGKLPELGKGLGKGIKEFKD ATDLSDDDGKKKKKEIAESKKEEPAESKKEEPVESKE" gene 254697..256268 /locus_tag="Dhaf_0232" /db_xref="GeneID:7257193" CDS 254697..256268 /locus_tag="Dhaf_0232" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: amt:Amet_0759 flavocytochrome c" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002456736.1" /db_xref="GI:219666301" /db_xref="InterPro:IPR001613" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7257193" /translation="MTINRRDFIKRAAAGAAVVAGSSFLVGCNNTEAVAPASAPEAWD QETDVVVVGGGNGGLSAAAAAVEEGKKVILCEISAFLGGGSAYSGGTIHSWGLDTWEK YKEHTEDLHDPVLAKKYVETFRQVYLPWLEKNGIPLKKHPGGKGFNNDYGLGSGEAGY LRHKAYFDALANFVTGKGGTIMTQTRVLRLVIDEAGMVCGVQAIKKGESKAIFIKAGS VILATGGFQSNKGLMAKYIGPNGDVARNMGTPYNTGSGMLMAQGVGAMTQGSFSTFSG TFSGIVPGPAVEDEPELYEEKRAGDPQSLPGIGGGRPAVPMWVNFLFPDETTGILVNL QGKRFADETSPIEAKYARLPQEVLKQKRAMAFMIGDKAIYDKAAGSEAILKMYMDQGG KVVEAATLEELAAKCQEIHGMHKGAFLKTVNEYNKAIDSGTTDSLEVPRVLNHNKIAQ GPFYAVPVTANIYHTFGGVAINENAQVLDVQRTPIPNLYACPPCAGIFREVYTGGIAS AGTFGYIAGKHIAGK" sig_peptide 254697..254780 /locus_tag="Dhaf_0232" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.825 at residue 28" gene 256505..258496 /locus_tag="Dhaf_0233" /db_xref="GeneID:7257194" CDS 256505..258496 /locus_tag="Dhaf_0233" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cbb:CLD_2687 aor transcriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002456737.1" /db_xref="GI:219666302" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7257194" /translation="MHVHELLQRISQGTEKAYLEKCRDQRELFMEGKPVDPGIVPKVV YNSWVRSQRYGVDPFEKPCHHPIDKSKSKELSRFIECLERYNFFIKQALELIDYQGFT FTFSAKESLTKHIYDDLGSPFANLIGECSERTVGTNATAIALAENVPVALVSSLSYQY WPAENGVNTAAPIHNHQGEVMGGIHIGLKDIKRTQDAFWLVTYLAQVFDRLYLPMTQK HEKKIKDIIDLLPQGVAYINNKKSIHYNEKFQTLVNLSKGKNSLKKVSEFFSQEDWTS IFACQEIKADGKTLIINSNSLDYEDFETSKIFIVEEKQSLTQRLQENSQGSKTTVGLY SFDDIVGNNAELNEAKSIGLNVAGTSVPVLIFGENGTGKEMFAQAIHAASPRREKPFI AINCGAIPAELVESELFGYEEGSFTGALKGGKIGKIEAASGGTLFLDEIESMPVQDQI KLLRVISTGKVQKVGSTKEIPVDIRLISATKKDLLEESDKGLFREDLYFRISTFIIEL PALRQRREDILLLTKEFISKFSRKYGLEQTVEMAQEFVEALENYSWRGNVRELEHSIE RAIILMGAGLTLKVDYLSKRIQESYQNYQVKGLVEDVLAKGLKKQEQGLLYTAEAMII DHVLKSVGGNVTAAAEKLGVTRKTIYNKLQEHPDLRVVK" gene 258605..258991 /locus_tag="Dhaf_0234" /db_xref="GeneID:7257195" CDS 258605..258991 /locus_tag="Dhaf_0234" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: LOC759205; similar to 5-amp-activated protein kinase, beta subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456738.1" /db_xref="GI:219666303" /db_xref="GeneID:7257195" /translation="MSKKGRFLLMFALFLSLSVGLFLSSAANTNAYPDLSPDGKTCTP CHEEGTHGGEETPAETPGETPGETPAETPGETPAEQPAETPAEKPAETPAEQPAETHE PMSPWIVVGGVIVILAVIYFLAIKKK" sig_peptide 258605..258685 /locus_tag="Dhaf_0234" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.342 at residue 27" gene complement(259121..261763) /locus_tag="Dhaf_0235" /db_xref="GeneID:7257196" CDS complement(259121..261763) /locus_tag="Dhaf_0235" /EC_number="2.4.1.129" /inference="protein motif:TFAM:TIGR02074" /note="KEGG: hmo:HM1_1810 penicillin-binding protein 1a/1b family protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase" /codon_start=1 /transl_table=11 /product="penicillin-binding protein, 1A family" /protein_id="YP_002456739.1" /db_xref="GI:219666304" /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR011816" /db_xref="GeneID:7257196" /translation="MASPPKRTPSKRPRKKKRVSKLRVFLVSFGSVFTLACIALLIYV LYVVAGTPDWHPDTLTNQKQTSFVYDMDGNQIAELHAAENRQMVDSSEIPQLVKDTFV AVEDKRFNDHFGVDPIRIVGSFIADLKSQSWKEGASTITMQLANNAFIENPREKTLVR KLQQAALAIQLEREYTKDEILTFYLNRIFFGESSFGIQAAAKTYFGKDLKALNPDEIA LLAGLPQAPSGYNPYYHPEEAKKRRTIVLGVMKDSGLITADEYDQYKDAPFEHVENVK ANRAESEKPVVAGTNYQYPYFVDHVIEELINEHGLTEDQIFNGGLRIYTTVDTKIQAA AEKEFANAANFPQSVDETLVQGAMTVLDPKTGAIRALVGGRDHNTARGFNRATRASRQ PGSTVKPLVVYAPALEKGGFFPGTVLDDMPVKYNAGNGQVWAPVNYDTEYAGWRGLIT MRFAVQNSVNVYAVKLMNLVGIEYSWNFAKNSLGLPLEEGDKVLSLALGTNQMSTLDM ASAYGVFANNGVRVAPHAIEKVQDANGKEVLVPQVTKERTMKETTAYLMNSMLRSVVT GGTGTRAQIGNWAVAGKTGTTSLDPDIYGYRTGNPDAWFAGYTPEYVGVVWMGYDKDD ETLTHYLHKVYGGQYPAQIWKNVMTAAHEGLTVQTEFQQPSGIVGGDFDTKSGLIPSS LTPKDFIRREIAAQGDFPTRVSDVWVEKEIDKDHPEYLAGTGTVNKEKKVFLNITGRD SETPWPSDEQPYKMPEKEYNETPPPNETTSPPAGDPSIPIPTLGAVAYDAAQSSVTIP VAYPEGSEGLHLIVYVKFPDHDFVQPFSPDAQPGGSNQIHIPLSIEGEPISPGNYSFW ACLQSPETGATGNPSPVAVLTITD" sig_peptide complement(259121..259270) /locus_tag="Dhaf_0235" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.983 at residue 50" gene complement(262074..263864) /locus_tag="Dhaf_0236" /db_xref="GeneID:7257197" CDS complement(262074..263864) /locus_tag="Dhaf_0236" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: sez:Sez_1652 transposase IS4-like" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002456740.1" /db_xref="GI:219666305" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257197" /translation="MIRKDSKMRSGVLKTHVRVVEGYRPGPGMPTKQRTIRSFGYLED QDDPEAFMAMVEEFNANFKQEVPLRIEVASNALMYSEENRRQNYGYKFLEAVYNLLEI DSFIKSYETSHRFRGEYSLNDIFKFLVLARILRPDSKRASCQMKDSFYGMRMNFTLPD VYRSLDHFADFEIELQRHLNEQVKGKIGRDLSYAFYDVTNYFFEIDFPDGGDDLRKKG VSKEHRTDPIAAMGLFMDLNGLPVNMSIFPGNTSDSLTLQPTMKEVKASYELGRLVVV ADKGLNSSKNIDAIVNNSDGFVFSQIVKGKKGQRYHEKLFDESGWISNEGGTYRYKLF NEDYEGKDKDGKKELRTRKVLLYWSKPEADRARRKREEKLEKAACSVKNNAYSIKKGV DEYTKETLVDLESGEILENTKKLRSVDLEKAEKDAMYDGYFCIITSELDYDERKMRQV YGGLWRIEQSFRIMKTDLYARPVFVSKNEHIRAHFLICFVALLIIRILQHRMGRKALS AERIARALGAATCQVLKGGIIHLDDVGGAIAFEKVRNKKGELVDTLAFSDKDEVALDY KVIQDVFGTDFYTIYSRQEVFNKFLKKISL" gene 264186..265448 /locus_tag="Dhaf_0237" /db_xref="GeneID:7257198" CDS 264186..265448 /locus_tag="Dhaf_0237" /EC_number="6.1.1.1" /inference="protein motif:TFAM:TIGR00234" /note="KEGG: bcy:Bcer98_3333 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_002456741.1" /db_xref="GI:219666306" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002307" /db_xref="InterPro:IPR002942" /db_xref="GeneID:7257198" /translation="MNILDDLKARGLVYQTTDEEALYKRLESPMTLYCGFDPTADSLH IGHLLPVLMLRRFQLAGHCPIALVGGGTGLIGDPSGKTSERTLNPTEVVQEWANRIKE QLSCFLDFEGVGNPAIMANNYEWLGTINVIEFLRDIGKNFSLGSMLAKESVESRMSRG ISFTEFSYQILQSYDFLKLNELYGCEMQIGGSDQWGNITSGTDLIRRMSVGEDRQVHG LTVPLVTKSDGTKFGKTEGGAVWLDPDKTSPYKFYQFWINTDDRDVVKYLNFFTFLSI EEIQGLAQEVESQPEKRNAQRMLAKEVTELVHGVEARERAEKISQALFTGGIANLTAK EVEEGFSDVPSADVEDQEMLLVDALIKVGAVSSRRQARESMESGAVYVNGIRQTDTTL TVAQLDKIESRFIVIRRGKKNYYLVKLV" gene 266001..267554 /locus_tag="Dhaf_R0018" /db_xref="GeneID:7257199" rRNA 266001..267554 /locus_tag="Dhaf_R0018" /product="16S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7257199" gene 267792..267867 /locus_tag="Dhaf_R0019" /note="tRNA-Ala2" /db_xref="GeneID:7257200" tRNA 267792..267867 /locus_tag="Dhaf_R0019" /product="tRNA-Ala" /db_xref="GeneID:7257200" gene 267971..271032 /locus_tag="Dhaf_R0020" /db_xref="GeneID:7257201" rRNA 267971..271032 /locus_tag="Dhaf_R0020" /product="23S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7257201" gene 271173..271288 /locus_tag="Dhaf_R0021" /db_xref="GeneID:7257202" rRNA 271173..271288 /locus_tag="Dhaf_R0021" /product="5S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7257202" gene 271662..272438 /locus_tag="Dhaf_0238" /db_xref="GeneID:7257203" CDS 271662..272438 /locus_tag="Dhaf_0238" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: drm:Dred_1576 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF81" /protein_id="YP_002456742.1" /db_xref="GI:219666307" /db_xref="InterPro:IPR002781" /db_xref="GeneID:7257203" /translation="MNIFMGLAIGLLSGFFGGLVGLGGGIIMIPLMVGLLKINQHMAH GTSLVGVVFTGISGAITYSLSGSIELVPALLLASTAMITARLGARYATSLPEWKLKRS FGYFLIFVTIVFLLKPYLGEFSLSSTVWIKTIILLGIGAFAGFLSGMMGVGGGSIMVP AMVIFAGMGQQVAQGISLLAMIPASAIGAFTHNRNGNVHTKILPGLVVGILPGTFLGG SLAHILPEVALRIIFAIVVVYTAIKNIRAKKPETAVEPST" sig_peptide 271662..271733 /locus_tag="Dhaf_0238" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.781) with cleavage site probability 0.387 at residue 24" gene 272435..273190 /locus_tag="Dhaf_0239" /db_xref="GeneID:7257204" CDS 272435..273190 /locus_tag="Dhaf_0239" /inference="protein motif:PFAM:PF03883" /note="PFAM: protein of unknown function DUF328; KEGG: cpy:Cphy_1568 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456743.1" /db_xref="GI:219666308" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR005583" /db_xref="GeneID:7257204" /translation="MKIIISPAKKMNMDGDFLSPRNIPVYLEKAKKLQRHLQSLPYEE LRKLLCCNDEIAGLNYERYQTMDLSGYTSPAILAYDGIQYKYMAPQVFEDDYFDYIEK HLRILSGFYGILKPFDGVVPYRLEMQAKLKTDFCRNLYDYWQDDIYRELTQEDTTILN LASAEYSKTIEKYLTAGINYVKCVFGELRDGRVIEKGVYVKMARGEMVRFMAEKAIKD LEQIKEFNRLGFRYREQLSDNNTFVFVKAMAEK" gene 273225..274124 /locus_tag="Dhaf_0240" /db_xref="GeneID:7257205" CDS 273225..274124 /locus_tag="Dhaf_0240" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_2729 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002456744.1" /db_xref="GI:219666309" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257205" /translation="MINSLADPSINLRESLDAKSYTHINNLQRLCLEHDRTNLKLELD YKLSRAEGKPGSLKTINEFMCYEGELLIGYMGICDFGGEEIEVNGMVHPDYRKKGIFK TLFSFAKNEWSKRRASRMLLLSDRDSLTGQAFIKRVSGVKYEHTEYEMFLQSDTKQEL NSCKVVLRKATGNDTREIARQNFIYFEQESQDENMLIPEEEARAGMIIYMAEVNNCVI GKVHLDISSNVGGIYGLGVLPEYRRKGYGRDILTLGIKELKSNNFQEIMLQVNVKNEK ALDLYRSCGFEVTSTMDYYELKK" gene 274255..274578 /locus_tag="Dhaf_0241" /db_xref="GeneID:7257206" CDS 274255..274578 /locus_tag="Dhaf_0241" /inference="protein motif:PFAM:PF00085" /note="PFAM: glutaredoxin 2; Thioredoxin domain; KEGG: cbe:Cbei_3329 thioredoxin domain" /codon_start=1 /transl_table=11 /product="Thioredoxin domain protein" /protein_id="YP_002456745.1" /db_xref="GI:219666310" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR008554" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7257206" /translation="MALKQLDSNSFEEIIYDNGEACLVLFSRKSCHVCKEVGPMVEDL APKYSGKFGFYYVDVEENMTLFQRFSLKGVPQILFFKDGEYQGKLSGNVEEEVLEEKI AEIQA" gene complement(274679..275131) /locus_tag="Dhaf_0242" /db_xref="GeneID:7257207" CDS complement(274679..275131) /locus_tag="Dhaf_0242" /inference="similar to AA sequence:KEGG:BLi00256" /note="KEGG: bld:BLi00256 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002456746.1" /db_xref="GI:219666311" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257207" /translation="MDKEKAIKLVSSKIKLIRVENGYSQDRMADIIGISKKTLVQIEK GRDYASWGVVVATCAMFRESEIMQSIFGDDPLEVLRTIAHERIDSPKEKTMGGKIWWA DVHKEGLFRLQQNLISKHYRILDDDGYRWFSSFDKEEALTRLFELSSS" gene 275270..275875 /locus_tag="Dhaf_0243" /db_xref="GeneID:7257208" CDS 275270..275875 /locus_tag="Dhaf_0243" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bth:BT_4749 putative DNA methylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456747.1" /db_xref="GI:219666312" /db_xref="GeneID:7257208" /translation="MDMGKKRKIIIPAAVGLGLLIAGFAYLMQIRGEFKDYLSEKYPE QTFQVGFIKIDPIYGSYFTTASCLNDDVSFPIRKSFRTENINESYLQTKSHNQYNAYI KEVFNESGIKNHIISVTGGGKDHYQNDGHYDQINLYLTEEADLISVTKTALNLLREKG VQADTVILTQEKDGHVYELYGSTADYALTEDQLREKIRKIK" sig_peptide 275270..275353 /locus_tag="Dhaf_0243" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.783) with cleavage site probability 0.671 at residue 28" gene 276084..276746 /locus_tag="Dhaf_0244" /db_xref="GeneID:7257209" CDS 276084..276746 /locus_tag="Dhaf_0244" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mta:Moth_1432 metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002456748.1" /db_xref="GI:219666313" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7257209" /translation="MLYRLMKRFSDYNILHDVIDCLTASLEAKDNYTSGHSNRVGDMA FDICKSLKLSIVERDRIHIAAHLHDIGKIGIPDHILNKPGRLSPAEWAQIQGHPEIGY TILSKSRKLKDIGQIVLSHHERWDGKGYPHGLKGEEIPLGARIIGVCDSIDAMTSDRA YRKAFTWAECKAEIIANKGSQFDPEVVEAITDSLWSKWQMEYCKEREKEHSLGQGIQS AT" gene 276918..277367 /locus_tag="Dhaf_0245" /db_xref="GeneID:7257210" CDS 276918..277367 /locus_tag="Dhaf_0245" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456749.1" /db_xref="GI:219666314" /db_xref="GeneID:7257210" /translation="MDINYAIKEVIRHHRQAVQKSAWEFIDVDTLYTLRDIAITVEDE KFHVVGDSDKYYVMVRKSSMDNDVIMFGRVDGGNLEKTLARDIPKVGLAILAIRHIED DHYIDDLLSARREELLDQLILCFGSERFNLADGTSFTLQELKQAVSH" gene complement(277484..277639) /locus_tag="Dhaf_0246" /db_xref="GeneID:7257211" CDS complement(277484..277639) /locus_tag="Dhaf_0246" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456750.1" /db_xref="GI:219666315" /db_xref="GeneID:7257211" /translation="MAIKTEQQAPAAKKAYEDEWYDLLPIEKKLIGGSLGLGLTLLVI FVIIFKF" gene complement(277667..279136) /locus_tag="Dhaf_0247" /db_xref="GeneID:7257212" CDS complement(277667..279136) /locus_tag="Dhaf_0247" /inference="protein motif:PFAM:PF03601" /note="PFAM: conserved hypothetical protein; KEGG: drm:Dred_1452 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456751.1" /db_xref="GI:219666316" /db_xref="InterPro:IPR004630" /db_xref="GeneID:7257212" /translation="MSTNTYARKKALQNEDWWAAWLGLFIFALGLGPYFGADLLGWVT KASVWIEPAKAFAPVSKATGLNGFTSLLVTFLFVLAITTVAAKFVGSNLKKYAIGFSI IFWVTMGCLMLGNIAYIGATPDKTASYGIGWSLGLGEMGYIIAMVVGLIIGNFFIKQA DFLKEAAKPELFIKIGIVVLGASIAIKTLDAFGLATTIIIRGLCAVVEAYLIYWPVVY LIARKFFKFTPEWAAPLASGISICGVSAAIATGSAIRARPVIPVILSAVIIVFVALEL LLLPWLAQAFLFKDPMVAGAWMGLAVKSDGGAIASGAITDSLIRGRALRELGINWEEG WILMVATTTKVFIDIFIGVWAFILAIIWSVFPIDKNASANPGERNKVSAVDIWDRFPK FIIGFVLTFLILFLVGVNNPDGVKALSTGVNEGNAFRTIFFGLCFFSIGLVTNVRKLW AEGMGRIVAIYGIALFGFILWFGLFISWLFYHGITPPTV" gene 279955..280854 /locus_tag="Dhaf_0248" /db_xref="GeneID:7257213" CDS 279955..280854 /locus_tag="Dhaf_0248" /inference="protein motif:PFAM:PF02665" /note="PFAM: Nitrate reductase gamma subunit; KEGG: drm:Dred_1445 nitrate reductase, gamma subunit" /codon_start=1 /transl_table=11 /product="Nitrate reductase gamma subunit" /protein_id="YP_002456752.1" /db_xref="GI:219666317" /db_xref="InterPro:IPR003816" /db_xref="GeneID:7257213" /translation="MFLVFYAILAMFLFLALSAYKAYEYTKMPMHGRLDLYPVPKEKG HEHGGSYYEQAEWWAKPHETSTASEIVDMLKEILFIKKLFQNQKSLWWLSYSLHLGIY FIIAWTVILVAAAATQLAGGTVAADGGLWGILLYYATPLVGWVGFFLASFGAVSLLVR RVADPILKKYTTPQEYFNLLLLFVVTLTGVLVWSSDITMSNARDAMANVLSFQPLNGE PLLTVHIILAGIMLIYIPISKMSHYVGKFFSFHMVIWDNDPNVAGSKVEEKIRQAAQY RPQNKWSAPHIAGAPAPTEKSPK" sig_peptide 279955..280020 /locus_tag="Dhaf_0248" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.515 at residue 22" gene 280888..282501 /locus_tag="Dhaf_0249" /db_xref="GeneID:7257214" CDS 280888..282501 /locus_tag="Dhaf_0249" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: drm:Dred_1446 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002456753.1" /db_xref="GI:219666318" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257214" /translation="MINHKDLKPSDLNRPDEQLVKVEELMPLPRPYDKPGMEPDFMEV KPAWREKYCTSLDGFVAIDTLTRPKSKEEEEEFVRKFLSGLEKLFTDANNGMRQPLML SFEYCAKCDTCSNACHIYEGSGNNELYRPIFRVEALRKIYKKYFTTSGKLLGGLVGAD LEATWESIARLGESAYRCNLCRRCAQTCPLGLDNGIMAKEIRKIFSMEMGIAPSPIHK KGTENQLKTGSSTGLTKPAFLDIVEFLEEEMDEKFGLKIKFPIDKKGADILLMHNAGE YRAWPENPIAFAILFEAAGIDWTISSEMMGYDSVNYGIWYDDAQAKKIALAQMKVAKD LGVRRVVQGECGHAHKAAAVSADRMAPGSDKVPVESFFPLLRDIVKSGAIKFDPSRNN FPVTLHDPCNVVRQMGIVMPQREVLHQLAPQFREMTPHGVDNYCCGGGSGFAIMHSQN FGDFLKKISARKKFAQILNAFQDTIEDPQIVKYICAPCSNCKGTMRDILEYYEATDKF NVQYGGLIELVVNAMADLKRPFFEFLEEE" gene 282548..284242 /locus_tag="Dhaf_0250" /db_xref="GeneID:7257215" CDS 282548..284242 /locus_tag="Dhaf_0250" /inference="protein motif:PFAM:PF00070" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: pth:PTH_1164 NAD(FAD)-dependent dehydrogenases and rhodanese-like sulfurtransferase" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002456754.1" /db_xref="GI:219666319" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR000815" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257215" /translation="MKVVIIGGVATGPKVAARLRRLSIDAEITVVEKGKIVSYGSCGL PLFLGNLVPKIEDLMKTSAGLIRDTQYFEDTKGINVLTQTEALAIDRQQKKVRVRNLA TGEERDLDYDHLVLATGAKEVVPPIPGIQYQNVYTLHSLDDAVNIKALIKEKKIQHAT IIGAGLIGIEVADAIAGPRLKVTLFESQGSVVPKLLDPDMALLVEHKMRSRGIDLRLN CPVKELTGDEDGKVNGVILENESITTGLVIVAVGVRPEVTLARQAGLTLGITGAIQVN QYMQTDDTYIYAGGDCAEQVNMLSGRQVFVPLASTANKQGRVIADNIAGRASEFPAIC ATSVFQAFELNVGRTGLGEPEARELGYDVITSLSTGLDAVHYYPVHGAVTIKLIAERT SGRLLGAQVCGTGEAIKRLDVLITILRFNGTVKDISNLDLSYAPPFATAIDVLIHAAN TLENKQLGIVDTVNPFELLERLKKDKSIIFVDVREGDETRANPVEGSQIIVIPLGELR KRYTEIPQGSPVVTFCELGIRGYDAACFLKGVGFQDVSFLEGGMSTWGALQPALNM" gene 284380..284568 /locus_tag="Dhaf_0251" /db_xref="GeneID:7257216" CDS 284380..284568 /locus_tag="Dhaf_0251" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_2405 ferredoxin" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002456755.1" /db_xref="GI:219666320" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257216" /translation="MFIITIDPDSCSGCDACADSCPAHLLKFNGEITEVVGDETECMG CESCVSVCPTGAASIMEM" gene 284608..285801 /locus_tag="Dhaf_0252" /db_xref="GeneID:7257217" CDS 284608..285801 /locus_tag="Dhaf_0252" /EC_number="1.8.99.3" /inference="protein motif:TFAM:TIGR02064" /note="KEGG: chy:CHY_2410 dissimilatory sulfite reductase alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region" /codon_start=1 /transl_table=11 /product="sulfite reductase, dissimilatory-type alpha subunit" /protein_id="YP_002456756.1" /db_xref="GI:219666321" /db_xref="InterPro:IPR006067" /db_xref="InterPro:IPR011806" /db_xref="GeneID:7257217" /translation="MAEKRTPQLDELEKGQWPSFVTEIKKAAVKNEASKELLHLLERS YEEKRGHWKHGGIVGVKGYGGGVIGRYTDLPEDYPNLAAFHTVRINSPSGWFYNTKSL RTICDIWEKRGSGLMNFHGATGDAILLGTTTDQLQPIFDELSEGGFDLGGSGSDLRSP SCCVGPGRCEHACYDTLEACYNITNQYQDELHRPMWPYKFKIKFSGCANDCTAAIARS DCAVIGTWRDTLTIDQEAVKAYVAEGLNIQAVVCDRCPTKCLKFDAETQELSVIAEEC TRCMHCINRMPKAIAPGKERGATILLGGKSTIVQSAFMGWVIVPFMKMEVEDDFQEFK DMIERIWEWWDENGKTRERIGETIYRLGMTNFLTSVGLPAVPQMVYRPRANPYVFWPE DEIKK" gene 285815..286873 /locus_tag="Dhaf_0253" /db_xref="GeneID:7257218" CDS 285815..286873 /locus_tag="Dhaf_0253" /EC_number="1.8.99.3" /inference="protein motif:TFAM:TIGR02066" /note="KEGG: drm:Dred_3186 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region" /codon_start=1 /transl_table=11 /product="sulfite reductase, dissimilatory-type beta subunit" /protein_id="YP_002456757.1" /db_xref="GI:219666322" /db_xref="InterPro:IPR005117" /db_xref="InterPro:IPR006067" /db_xref="InterPro:IPR011808" /db_xref="GeneID:7257218" /translation="MAILDQGPLNYKEQLPPIIKENYGKWRYHENPKAGVLKHVSESG AELYSIRVGSPRLVSLDFIREICNLADEYCDGYLRFTARHNVEFLVSDAAKVEPLIAA LGAKGLPVGGTGASVSNIVHTQGWVHCHTPATDASGVVKAVMDDLYEYFVSMKLPAQM KISLACCLNMCGAAHCSDIAIVGVHRTPPRIDHDKIRKGTEIPSLVASCPTGAIRPNP KEKSVVVNDAKCMYCGNCYTMAPGMEIIDPQNDGIAILVGGKVANARTNPMFSRMVIP FLPNNPPRWPEVTDAIRNIVETWAANANKGEKMGEWIERIGWERFFSLTGIEFSDKLI DDFIFSRETFRTSAAFKY" gene 286917..287138 /locus_tag="Dhaf_0254" /db_xref="GeneID:7257219" CDS 286917..287138 /locus_tag="Dhaf_0254" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: chy:CHY_2408 putative dissimilatory sulfite reductase subunit D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456758.1" /db_xref="GI:219666323" /db_xref="GeneID:7257219" /translation="MQKGAADPVIKEKVLAFLDTVEKAKSKEIAAQIGEKKGDVDLAV KELAMEDKVEYLYITTTFIALKGKVKEPT" gene 287240..287830 /locus_tag="Dhaf_0255" /db_xref="GeneID:7257220" CDS 287240..287830 /locus_tag="Dhaf_0255" /inference="similar to AA sequence:KEGG:Sfum_1145" /note="KEGG: sfu:Sfum_1145 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456759.1" /db_xref="GI:219666324" /db_xref="GeneID:7257220" /translation="MDKTLRSLLTEKQDLIIEKWCREIINTYPKETAKFLKEKRDEFA NPIGNTISQGIEQTFTALIQESKENEVHLFLKDMIKVRAVQSFTASQAVSFVFLLKRI IREELGKVAEEERIAKALLDFETQIDQLALASFDIYSECRDKLAALKTMEIRNQTYRL LQQANLLTLRSDMEPEEPHSEPEPFRVNTKRKEVVT" gene 287827..288828 /locus_tag="Dhaf_0256" /db_xref="GeneID:7257221" CDS 287827..288828 /locus_tag="Dhaf_0256" /inference="protein motif:PFAM:PF02665" /note="PFAM: Nitrate reductase gamma subunit; KEGG: sfu:Sfum_1146 nitrate reductase, gamma subunit" /codon_start=1 /transl_table=11 /product="Nitrate reductase gamma subunit" /protein_id="YP_002456760.1" /db_xref="GI:219666325" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR003816" /db_xref="GeneID:7257221" /translation="MKALFSLIAVLILMLIPLVGVGLANLQGLFGIVLPYLALILFLG GFIYRIMGWARTPVPFRIPTTVGQGKSFDWIKQNKIENPTSNLGVIIRMAMEVLLFRS LFRNSKTELRNGENGPQLAHGSNKWLWLFGLMFHWSLLIILIRHLRLFLEPVPAVISS LDSLDSFFQIGLPALYITDMLIVAALTFLFLRRVVAPQVRYISLAADYFPLFLLMGIA ATGILMRYIFRVDIASIKEFAVGLLTFTPHIPDGIGTIFYIHLFFVSCLFAYFPLSKL MHMGGIFMNPTRNMKSNNRMVRHINPWNYPVEVHTYEEYEDDFRTKMIKAGIPVEKE" sig_peptide 287827..287901 /locus_tag="Dhaf_0256" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.807 at residue 25" gene 288838..290466 /locus_tag="Dhaf_0257" /db_xref="GeneID:7257222" CDS 288838..290466 /locus_tag="Dhaf_0257" /inference="similar to AA sequence:KEGG:Moth_1606" /note="KEGG: mta:Moth_1606 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin, iron-sulfur binding" /protein_id="YP_002456761.1" /db_xref="GI:219666326" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257222" /translation="MAKYKLPKSEELSKIDYKPGSTEWMDTPVTTPFEPGTFCWGAKG KNLETVGFPNARDWSPVDEDWQLPENWKSTVIEGIGERLTKYRSFKIMMDICVRCGAC ADKCHFYIGSGDPKNMPVLRAELLRSVYRRYFTPSGKFLGRLAGARDLTPEVIKEWWY YFYQCTECRRCSVFCPYGIDQAEITIIGRELLNLLGLNIDWIAGPVANCYMKGNHLGL EPHAITGNIEMMCDDIEDITGVRVEPTFNRKGAEILFVTPSGDLMGDPGIYTCMGYLM LFHELGLDYTWSTYASEGGNFGFFTSNEMAKRLNSKIYAEAKRLGVKYIIGGECGHMW RVVNQYMGTWNEPADFLEVPVSPITGTRFDNAASTKMIHITEFTADLIKHGKLKLDPS RNDHLKVTYHDSCNTSRGMGLLEEPRYIINNVCNNFYEMPESTIREKTFCCGSGSGLN ASENMEERMRGGFPRANAVKYVQDKHGVNMLANICAVDRAALPALMDYWAPGVGVIGV HELVANALVMTGEKERTTDLRGEDLPEKGVTADE" gene 290459..290902 /locus_tag="Dhaf_0258" /db_xref="GeneID:7257223" CDS 290459..290902 /locus_tag="Dhaf_0258" /inference="similar to AA sequence:KEGG:Moth_1605" /note="KEGG: mta:Moth_1605 cytochrome c family protein" /codon_start=1 /transl_table=11 /product="cytochrome c family protein" /protein_id="YP_002456762.1" /db_xref="GI:219666327" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7257223" /translation="MSKGGKTIGGLLIFVVIAIMPFLYNMGKADAKPEINTDTPVIRE LGATQCIEGTEYMRENHMHLLLEWRDAVVREGKTTYTNSQGEQFEMSLQNTCLNCHND TPETVYYTAETANQGDNQFCYSCHNYAAVEPDCWACHAGPREAEK" sig_peptide 290459..290554 /locus_tag="Dhaf_0258" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.632) with cleavage site probability 0.467 at residue 32" gene 290899..291693 /locus_tag="Dhaf_0259" /db_xref="GeneID:7257224" CDS 290899..291693 /locus_tag="Dhaf_0259" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1778 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002456763.1" /db_xref="GI:219666328" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257224" /translation="MSINRREFLKKAGVIAALGLGGAVTLDAFELLEPLKAADFTSEN KLAAQRWAMVIDMSKLSQADIDEIIKGCHELHNVPDMGNEKDEIKWIWTDTYEHVFPG DENHYLDEKTKTMPFLTLCNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCM AACPYGARSFNYWDPKPHLAKINPEYPHRSKGVVEKCTFCMDRLDQGLAPVCVEKSKG AIVYGDLEDPNSAVRKVLSTHYSIRRKPELGSQPSVYYLIGGEERA" sig_peptide 290899..290985 /locus_tag="Dhaf_0259" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.902 at residue 29" gene 291686..292837 /locus_tag="Dhaf_0260" /db_xref="GeneID:7257225" CDS 291686..292837 /locus_tag="Dhaf_0260" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: cpb:Cphamn1_1845 polysulphide reductase NrfD" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002456764.1" /db_xref="GI:219666329" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7257225" /translation="MLEKSLSGSKRYWLWVGFLLVVILGGFLAYLRQYNEGLGVTGMS RDVSWGLYISQFTFLVGVAASAVMVAIPYYLHNYKKFGKIVILGEFLAVPSVIMCILF IFVDVGRPDRILNVLLHPTPHSVMFWDMCVLCGYLLLNLVIGWTALGSERKGFPPPAW VKPLIYLSIPWAVSIHTVTAFLYSGMPGRHLWLTAIMAARFLASAFAAGPALLILLCM IVRKVSTFDPGKEAIQSLAKIVTYAMIANVFFYILEFFTAFYSNIPGHMHPLQYLFAG LHGHGQLVPFMWVAVVLAFVGIFLLVVPKFRRNEKILPFALLSVFIAAWIDKGLGLVL GGFVPTPLEHVVEYTPTATELAVTLMVYAIGALLITILYKVVIGVREEI" gene 292884..293201 /locus_tag="Dhaf_0261" /db_xref="GeneID:7257226" CDS 292884..293201 /locus_tag="Dhaf_0261" /inference="protein motif:TFAM:TIGR03342" /note="TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pth:PTH_2856 dissimilatory sulfite reductase (desulfoviridin), gamma subunit" /codon_start=1 /transl_table=11 /product="sulfur relay protein, TusE/DsrC/DsvC family" /protein_id="YP_002456765.1" /db_xref="GI:219666330" /db_xref="InterPro:IPR007453" /db_xref="GeneID:7257226" /translation="MAELVVNGVSYELDEDGFLEDAAEWNEDVAKALAPNEDVEELTE EHWRVINYLRDYYDQYGVAPMVRKLLKDTGYDQKTIYNLFPTGPGKGACKIAGLPKPT GCV" gene 293341..294810 /locus_tag="Dhaf_0262" /db_xref="GeneID:7257227" CDS 293341..294810 /locus_tag="Dhaf_0262" /inference="protein motif:TFAM:TIGR00379" /note="TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: drm:Dred_3196 cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="cobyrinic acid a,c-diamide synthase" /protein_id="YP_002456766.1" /db_xref="GI:219666331" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR004484" /db_xref="InterPro:IPR011698" /db_xref="GeneID:7257227" /translation="MTTNHENQQMSTLSTPRLVIGAPQGRSGKTTFTLGLLRALSRQG LPVQPYKKGPDYIDTSWHTAAAGRVSRNLDSFMMSQEDICRSLAQHSQDCQFSLIEGA MGLFDGLDINGSASTAEIAKITSSPVLLVLDATRITRSLGAIVMGCQHFDPNINIVGV VLNKIARARHEKLARETIEQYCRIPVVGAIPKDSRILIPDRHLGLVTNGEWSETDTFL DNLADVVSENVDIAKIMELAQTAAPLSYSTPTKFSVSQGYPLKTKPPAPRIGVIRDAA FSFYYPENLAVLESKGAELVTISALAHQHLPKDLDALYIGGGFPEVFAEQLANNRTLR QEIRLAGEDGLPIYAECGGLMFLGRSIITGDGSYDMVGLLPLDTRMEKKPQGHGYTVM KVLENNPWFRQPKIRGHEFHNSSVLNLDRTKIEFGFEVERGHGIDGKYEGICYKGVMA AYNHIHALGSPDWAECMVKLATQYKERRSKMVFELFKSS" gene 295009..295977 /locus_tag="Dhaf_0263" /db_xref="GeneID:7257228" CDS 295009..295977 /locus_tag="Dhaf_0263" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: chy:CHY_2398 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002456767.1" /db_xref="GI:219666332" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257228" /translation="MFEQQFVVFKEVADTKNITLAAKRLHMSQPSISLQIQNMENLYG ARFFNRTNKGVTLTKAGEVFYDHVNNILNILTVAQQQISVLTEDQRALIYIGATLTIG EYILPNILAYLYKIRPDVDFKVKIANTETISQEVIEKRIHIGLIEGPAPRNKEIVVEK FWQDELVVVVPSFHPWAARHSITLAELAKERLIMREEGSGTRKVTELALKEMGLDLSQ INVTMELGSTQAIKKVVAAGIGITIISSLTVSRECENGLFKVLKVQDSPVYRPLNMLT LAHTTQTKDERFLISMLHDRDLLEAIINGNCEDDKELYPCGDCLEA" gene 296025..296894 /locus_tag="Dhaf_0264" /db_xref="GeneID:7257229" CDS 296025..296894 /locus_tag="Dhaf_0264" /inference="protein motif:PFAM:PF00795" /note="PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_2191 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /protein_id="YP_002456768.1" /db_xref="GI:219666333" /db_xref="InterPro:IPR003010" /db_xref="GeneID:7257229" /translation="MLQDIRIGLAQFEAKVGDTERNLQEIIRTAEVASSQGVSLLCYP ECALHGYSPKDASEIADPLDSMAVARLRECARDLGLILLVGMVEKSPEGKKPYISQLI VFPDREPEVYRKVHLGRIEQHYFTAGDSFPIFAAGGVKFSIGICWDWHFPELSAICSL KGAEIQFAPHASPVVSGDRKEIWKRYLGARAYDNSVYLCACNLVGTNNRDKEFSGGIL VFGPKGEVLAENQDTQEQLFVVDLPAKPINTLRSPKRQSMRDTFFLADRRKELYKELL ELEIEKMPQMSHD" gene complement(296988..297131) /locus_tag="Dhaf_0265" /db_xref="GeneID:7257230" CDS complement(296988..297131) /locus_tag="Dhaf_0265" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456769.1" /db_xref="GI:219666334" /db_xref="GeneID:7257230" /translation="MVEKKFPDKPANPDTKPAQNHKPDKAPSMDSRDGHGLSKDQALQ GKG" gene 297371..297835 /gene="nrdR" /locus_tag="Dhaf_0266" /db_xref="GeneID:7257231" CDS 297371..297835 /gene="nrdR" /locus_tag="Dhaf_0266" /inference="protein motif:PFAM:PF03477" /note="PFAM: ATP-cone domain protein; KEGG: lwe:lwe1575 transcriptional regulator NrdR" /codon_start=1 /transl_table=11 /product="transcriptional regulator NrdR" /protein_id="YP_002456770.1" /db_xref="GI:219666335" /db_xref="InterPro:IPR003796" /db_xref="InterPro:IPR005144" /db_xref="GeneID:7257231" /translation="MHCPFCGNDETKVLESRQVEEGTAVRRRRECERCARRFTTFEKF EDTPLIVVKKDGRREEFSRGKLKAGILRACEKRPVSIEQIETLVYEIEKGLRNGSERE VQSKAIGEAVMNALVHLDEVAYIRFASVYREFKDVQRFLEELHELVEKKSSR" gene 297980..301441 /locus_tag="Dhaf_0267" /db_xref="GeneID:7257232" CDS 297980..301441 /locus_tag="Dhaf_0267" /inference="protein motif:TFAM:TIGR02504" /note="KEGG: chy:CHY_0676 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, intein-containing; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; SMART: Hedgehog/intein hint domain protein" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent" /protein_id="YP_002456771.1" /db_xref="GI:219666336" /db_xref="InterPro:IPR000788" /db_xref="InterPro:IPR003587" /db_xref="InterPro:IPR004042" /db_xref="InterPro:IPR006141" /db_xref="InterPro:IPR006142" /db_xref="InterPro:IPR013344" /db_xref="InterPro:IPR013509" /db_xref="GeneID:7257232" /translation="MSFQESAPKAWLKANLTPNARVILEKRYLKQENGEVAESPEDML YRVASIIAQVEETFGKTKKEVKELAKSFYEMMAKLEFMPNSPTLMNAGRDLGQLSACF VLPVEDSMEEIFDAIKSAAIIHKSGGGTGFSFSRLRPKNSTVRSTGGVASGPVSFMKV FNAATEAVKQGGTRRGANMGILRVDHPDIREFITCKEDNKEITNFNISVGITEEFMKA VQEKRHYNLIDPHTKEADGQLYAPEVFQLIVDHAWRNGEPGIIFLDRLNRDNPTPQLG EIEATNPCVTGDTWVLTEEGAAQVRDLLGSQVKLALNGEYHETSKEGFFATGVKQVLT LKTQQGYELKVTADHLVRVASDMTRYKVTQEWKPAGELKPGDTIVLSNNRSIQWQGKG TKEEGYLLGLLLGDGTLKEEGAVISVWGEGEEAKSMMEAAEKAAFSLTHRQDFQGFQK EISERHEHRMRFAALRDLAQQYGILPGSKAITQELEKTGQDFYQGLLRGLYDTDGTVT GTQEKGVSVRLWQTDLAGLKVVQRMLQRLGIISTLYEERKPAGQKLMPDGQGGSKEYP VQAGHELVISQDNIEIFAEKVGFSNSKKAQLLAEKLNVYQRSLNRERFVDNIVACVPG DAEEVFDAQVPGINAFDANGIYVHNCGEQPLLPNEACNLGSINLKLMVTEKNGKVVVD WERLGQITRLATRFLDNVIEANTYPLPSIEEMVKGNRKIGLGVMGFADMLILLQTSYA SEDAVEYAEKVMNFIQTEARLESQRLAEERGTFPNYQGSIYDGVRPLRNATLTTIAPT GTISMICGASSGVEPLFAVAYTKTVMDGTPLIEVNPIFQSLAEDYGFNSPELMRKIAE KGTVLGFPEVPNWVQEVFVTAQEIEPEWHIRIQAAFQKYTDNAVSKTINFANEATHED IAKAYELAHELNCKGLTVYRDGSREEQVLSTGITKKAEEKAEEAKTQVSIPKVPFIPE VNTVLPRPRPTTTTGVTEKIRIGCGNLYVSVMADEKGICEIFTNTGRAGGCSSQSEAT ARLISIALRSGISVDAIIEQVKGIRCPACIRREGVNVTSCPDAIARVIKEYVELGKGK VNSVKVTSQPAVEEKPVQSKSASITNPQKTRATVAEGNACPECGMSINHESGCVVCTH CGYSKCG" gene 301676..303172 /locus_tag="Dhaf_0268" /db_xref="GeneID:7257233" CDS 301676..303172 /locus_tag="Dhaf_0268" /inference="protein motif:PFAM:PF02652" /note="PFAM: L-lactate permease; Citrate transporter; KEGG: bwe:BcerKBAB4_1152 L-lactate permease" /codon_start=1 /transl_table=11 /product="L-lactate permease" /protein_id="YP_002456772.1" /db_xref="GI:219666337" /db_xref="InterPro:IPR003804" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7257233" /translation="MEIILAAMPFLIILVLLFILRQSAVRAGISAYLLTLLIGLVIPR FQIERQEILHATVKAVLTSAIVAYVLLFGIFLYHIMNETGLIKRIASLISGSTQDPVR QVILLVVAFSPLVESVSGYGIAIIVVAPILVELGFSRFKAVLLSLLGLSAVPWGALAT GTYIGANLAGIPFQRLGTDVAVLSIPTFFYFAVTAVYLAGGWQGVRAKWAELMLVAGS LAFSVWLFNAYVSIELAGVFASLVALGVEFAFIYFTAKSTPEEAAFSLAARNQSKADI LKTMSPYLILTGVLFISRLVPPIKAFAGSHAVFSLPAYSFSLPVLYSPGFSIFLTCLL TILLFKIQKHVIKRAVQLSLKQWLPVTLSTIAFIGTSEIMAAAGMTTTLAQAAAAAFG SAFVLCSPLIGGFGGFLTGSNVASNAMLINLQVEVAKQIGVPPELFASMQNTSSSHMT MASPSRVLLGASVCNIRSEENRLLQKIFPMAMGSLVLVLAAVFILRLL" gene complement(303255..303611) /locus_tag="Dhaf_0269" /db_xref="GeneID:7257234" CDS complement(303255..303611) /locus_tag="Dhaf_0269" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_3302 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456773.1" /db_xref="GI:219666338" /db_xref="GeneID:7257234" /translation="MKRLKFRVWNKVSKKMHNPQAISFDIQNCNPFAVSIPAKSWDPA EKYELLQWTGLRDEGGTDVYEADLVLIDYEIYKVHWHESEAAFKLISLKGSLEKEAGL LPTGKIIGNTYETENL" gene complement(303717..304598) /locus_tag="Dhaf_0270" /db_xref="GeneID:7257235" CDS complement(303717..304598) /locus_tag="Dhaf_0270" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: mla:Mlab_0971 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002456774.1" /db_xref="GI:219666339" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7257235" /translation="MNRSYLKYITSLILFGFNGIVASHISLSSYEIVFTRTLIGSLFL VIVFGFSKQKMRFLSNKSHFLYLSLSGVAMGASWMFLYEAYTQIGVSIATLAYYCGPV IVMILSPLLFKERMTNAKLIGFLAVLTGMLCVSGQAMSEEKTLFGLMCGLLSAVMYAV MVVFNKKAVSITGLENSMWQLMASFATVFLFLGLKQDFSISIASGDWLPILILGIVNT GIGCYFYFSSIGHLPVQTVAICGYLEPLSALLLSTVLLGERLSLVQALGALLILGGAA FGELYRRKLPANSSLTT" gene complement(304717..305994) /locus_tag="Dhaf_0271" /db_xref="GeneID:7257236" CDS complement(304717..305994) /locus_tag="Dhaf_0271" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: rba:RB11482 alkyl sulfatase or beta-lactamase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002456775.1" /db_xref="GI:219666340" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7257236" /translation="MLHTNGEQLLKEFADHAYPRQVVEVIPGSVYHVIGYGHSNAGFI IAENSVILIDTLDSDERAQTLKSLIAQHTDKPVKTIIYTHGHPDHRGGSGAFMDSNPE IIAFAPCKPVLGRMNALHDVLNQRGIRQFGYQLSNEEALTQGLGIREGKAQGEGQYAI MPPTTVYQEDTVLRSLDGIDLELAAAPGEADDQILIWLPAHKVLFCGDNYYGCWPNLY AIRGSQYRDVSAWVDTLDKLIAYRAHYLLPGHTRPIIGETAVQETLTNFRDAIDYVLT ETLKGMNQGMTMDEVAEAVKLPEKWAKLPYLGEFYGTVSWSVRGIYAGYVGWFDGNPT HLNPLPPAVQAQKTVALMGGAETVLSAIGQALADQDYQWSIVLADLLLVMDRSHKQAK EYKARGLVGLGHRETSANGRHYYLAYAKELLAE" gene 306238..307230 /locus_tag="Dhaf_0272" /db_xref="GeneID:7257237" CDS 306238..307230 /locus_tag="Dhaf_0272" /inference="protein motif:PFAM:PF00953" /note="PFAM: glycosyl transferase family 4; KEGG: cbe:Cbei_1400 glycosyl transferase, family 4" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 4" /protein_id="YP_002456776.1" /db_xref="GI:219666341" /db_xref="InterPro:IPR000715" /db_xref="GeneID:7257237" /translation="MYCFKGDIREGSTFDGVYYPLFFVFFIVFMSIPLLEKLAVKWNF VDKPTERKKHKHPIPLLGGVGIFLGFMIGYLVFVRPINYQSLAIIIASVLVLGIGLID DWYKTLGKEFPALPRLMVHILAAWMVFSAGIVFYGFTNPFTQQYIVLPYIIQLILSIM WIVGVTTVINWSDGIDGLAGILSAIAGATLYVAALAKGQSDSALLSALLVGASLGFLR YNRHPARIFMGDSGANFLGFILAIVALSGAFKQATLVSLSIPVLALGVPIFDNLIVVL KRFSRGESIYKADATQIHHRLISSGLNPKQTVAFISLMSVCFSLLSIIILLLNI" gene complement(307344..308249) /locus_tag="Dhaf_0273" /db_xref="GeneID:7257238" CDS complement(307344..308249) /locus_tag="Dhaf_0273" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456777.1" /db_xref="GI:219666342" /db_xref="GeneID:7257238" /translation="MKKMLLATLIGISIILTGCNGSKDVDSPIGATSPTHSSTLSQEE ALRVLYQELLAKTEHTVAFLKEARVGNHTIYAFQHMVNGRAPTIAFVHSKTGKVYYDS VELLLDIFINSEDKEPYKAANYINKDIYYLEMKSVNDPEPTTWSTYVFNEDAYTSAEA AKKAVVKVYAENHPTLSLLGKPLAEVEKITKVESLKAPVETKGGEPAEVTQISLDNIL ILFDEDSISSEIFLEGQQEILGVKIGEPFNEISDKLGMPDSFGQDPEFENIYTMRYLF DGFQIEFYGENKDANTVSALIKKRI" sig_peptide complement(307344..307412) /locus_tag="Dhaf_0273" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.875) with cleavage site probability 0.393 at residue 23" gene 308451..308876 /locus_tag="Dhaf_0274" /db_xref="GeneID:7257239" CDS 308451..308876 /locus_tag="Dhaf_0274" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; KEGG: amt:Amet_1845 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002456778.1" /db_xref="GI:219666343" /db_xref="InterPro:IPR000524" /db_xref="GeneID:7257239" /translation="MRAIILNSDSIKPIYIQIAEWLEAEILKGNLTEDERIYSQYQLA EIFTINPATAAKGLNLLADEEIVYKKRGLGMFVSPHAKSYILQKRKNQILGQMIRDLV DEAVRLGVGKTELLEMIELAYQEADDRDREAGGEEEEKQ" gene 308873..309787 /locus_tag="Dhaf_0275" /db_xref="GeneID:7257240" CDS 308873..309787 /locus_tag="Dhaf_0275" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1846 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456779.1" /db_xref="GI:219666344" /db_xref="InterPro:IPR000010" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7257240" /translation="MSVVVGYELYKRYGKVQALENVSFAIEENTITGLIGRNGTGKTT LLKIIAGHLKPTQGKLRVFAQNPFDNLDVAGKVFLVDDTMAFPDSFTLQDILREVAVF YPNWNGQIAQGLLEYFLLNPQQRHGNLSKGSKSTFNAILGIAARCPLTLLDEPTTGMD SAVRKDFYRVLLKDYLEQPRTIILSSHLLGELEDILEDILLLNQGGLLMHKPILDLKQ YALGFRGSAQALQENLLNRLSEEAILHREEFAKGSLYLMIKAEELPEDFENIRSSGVE ILPVSLDDLCNTLTAPRKGGIDDVYKRG" gene 309765..310529 /locus_tag="Dhaf_0276" /db_xref="GeneID:7257241" CDS 309765..310529 /locus_tag="Dhaf_0276" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_1847 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456780.1" /db_xref="GI:219666345" /db_xref="GeneID:7257241" /translation="MMSINEVKTEPSTLSQVILKQYGYKLKGHSGLIYSLIIVQLLAI LLSLGSSSGMSSNSDLISIAVRTYTGDILLIFSLLWLMVVASLLGSQPYRSMEFSVVN NRLVSHASNILLLVTYAVYAGVTSTLAVIIHRLILSTTLKEGEFLFGGLQIIPQDLLL GIFVATLYFILVAATVYLIQSFSLHSKGLGIILWICFFAFGFGTVRIFDFNLGKVLEF YAAETSLGVFVLKVFCTAVLFFGSSMLITKGMEAKR" gene 310526..311281 /locus_tag="Dhaf_0277" /db_xref="GeneID:7257242" CDS 310526..311281 /locus_tag="Dhaf_0277" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456781.1" /db_xref="GI:219666346" /db_xref="GeneID:7257242" /translation="MTKLLFTNIIFLFLIIGFIYLLAKFVRPRLRRVYRWKTNLLIAG AYLALLVVSIPLALFLDQGEFFQSRNAQAQGMLAEAPADWSEDGGRYHIFENEPLERQ AGLVENSRQTYAADTPQLRIQTAGSTGYGRIFLERKKNADGLIEVSTYVAPHYARTDT FKPIDFTKLVAPPQITWEAGVLKIGDPVKQSFEFKMYSDSFPVWQFKEEKQSNYIGGG SMTFGEKGILVRIPPDMEVVDGDSGEFTWVSNQ" sig_peptide 310526..310708 /locus_tag="Dhaf_0277" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.856) with cleavage site probability 0.557 at residue 61" gene complement(311291..311533) /locus_tag="Dhaf_0278" /db_xref="GeneID:7257243" CDS complement(311291..311533) /locus_tag="Dhaf_0278" /inference="similar to AA sequence:KEGG:CKL_2706" /note="KEGG: ckl:CKL_2706 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456782.1" /db_xref="GI:219666347" /db_xref="GeneID:7257243" /translation="MKKDATRIKLSKEQKEEMASAIQRYFLQERDEEIGALASSLMLD FIIKELAPEFYNQGVSDSYQFMNERTEDLFSLQIYR" gene complement(311530..312438) /locus_tag="Dhaf_0279" /db_xref="GeneID:7257244" CDS complement(311530..312438) /locus_tag="Dhaf_0279" /inference="similar to AA sequence:KEGG:CKL_2604" /note="KEGG: ckl:CKL_2604 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456783.1" /db_xref="GI:219666348" /db_xref="GeneID:7257244" /translation="MPKSVLLNDGLADKYAGLLKCPICHNSMALINKKSLICRDKHCF DLAKQGYVNLLSHGIKTKYNKQLFEARKLLAQSGFFEPLNQLLCTLIGNLMNNSEGKA QGPFLNIVDAGCGEGSHLATIQQKLLQSKGIQPLGVGMDLAKEGIQMAARDYGSIFWC VADLAQCPFGDQQFNVLLNILSPANYSEFARILTDDGLIIKVVPEKDYLKELREILYE ETAKQDYSNAKTRELFENHLQLCKLVPLRYSVTLDQPLIGNLVQMTPLTWGAEETRIA KVLKLESLEITIDLTIMVGQKREERS" gene 312573..312866 /locus_tag="Dhaf_0280" /db_xref="GeneID:7257245" CDS 312573..312866 /locus_tag="Dhaf_0280" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: eli:ELI_11625 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456784.1" /db_xref="GI:219666349" /db_xref="GeneID:7257245" /translation="MRKSMVFSGLALVLMLFILTGCIPGDGSYDFDKPAGFLSGVWHG WIAPLSLIMGIFSETVRVYEVFNTGWWYDFGFYIAVISGFGGLSLSRKKKKDK" sig_peptide 312573..312638 /locus_tag="Dhaf_0280" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.934) with cleavage site probability 0.796 at residue 22" gene 313031..313330 /locus_tag="Dhaf_0281" /db_xref="GeneID:7257246" CDS 313031..313330 /locus_tag="Dhaf_0281" /inference="similar to AA sequence:KEGG:Dred_2849" /note="KEGG: drm:Dred_2849 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456785.1" /db_xref="GI:219666350" /db_xref="GeneID:7257246" /translation="MYQEKVITCKDCGAEFVFSVSEQEFYAEKGFTNEPGRCPSCRAA RKQQSRGGNGGYQRQERQMYPAVCASCGVDTMVPFQPSGDKPVYCRDCFTPRSRY" gene 313511..314602 /locus_tag="Dhaf_0282" /db_xref="GeneID:7257247" CDS 313511..314602 /locus_tag="Dhaf_0282" /inference="protein motif:PFAM:PF00144" /note="PFAM: beta-lactamase; KEGG: bat:BAS2564 hypothetical protein" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_002456786.1" /db_xref="GI:219666351" /db_xref="InterPro:IPR001466" /db_xref="GeneID:7257247" /translation="MKSKILLLMAMLIGSVYLTGCGRIAEPEQGTVMEEREQQNPEQR DVLVWEWQYGAPEDHGLNGDTLESLHATYDTTQILVSVIFKDGHIVDEYYKDGYDKAS LFLLHSCSKSVTSALIGIAIDKGYIESVDVPIAEYFPQILESDDNRLKHITLGHLLTN TSGFDSSDTEYWREWRNSENWVDFVLNRPLTSTPGTVFSYSTGNTHLLAAILQKATGK TAYEFGKEFLFDLIGMDSVQCNMDSQGISDGGNGFSMTVYDMVKFGLLYYHGGLWGEQ QIISREWVEESTRLQFKRSSGTADYGYQWWVRTFGEEQYDTFFAQGHGGQYIFVIPEL ELIIAFTSNHTGSSDMYWQFVNDIVAASD" sig_peptide 313511..313573 /locus_tag="Dhaf_0282" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.730 at residue 21" gene 314828..316453 /locus_tag="Dhaf_0283" /db_xref="GeneID:7257248" CDS 314828..316453 /locus_tag="Dhaf_0283" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cpy:Cphy_0604 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002456787.1" /db_xref="GI:219666352" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7257248" /translation="MKGWGCRVTIRSTLRAIVVLLLLFSVTSTVVVFYQLEKMQQDGA VINTAGVVRGATQRLIKLEMAKQPNDELIQKLDGIIEGLIQGDESLGLPKASDEVFIQ EMNKVKSEWQSLKGTIESAQRSGDMTALVQESESYFATTNAAVAAAEGFSAAKVKALK VIQSVLMVFNLILLIAIWFMSSNRISQPIQKLIGIVEHLNVSENIPEHFMNRKDEVGG LSRAFQGVIHNIRDLVAGLALSSEKLADSAAFLGNISQESSTAAMEIAKTIEGIALGA SDQANEIQNGVAQMDVLGHLVAEDQKKVEDLRQATDRVEQLKDEGTMILADLIKITDQ NGKSAQEVQETILETNESAKNIVEASLKIKEIAAQTNLLALNAAIEAARAGEQGRGFA VVAEEIRKLAEESNRFTTEIENITKVLTLKTREAVVKMGEMDSVVKIQSESVSATETK FAGIAEAIDRIQGYTEIISNSTDGIADKNQSIMNMIQSLSAISEESAASTQEVSASVQ EQTAAMDQIAGASQELAALAEELESSMQQFTQR" sig_peptide 314828..314920 /locus_tag="Dhaf_0283" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.627) with cleavage site probability 0.468 at residue 31" gene 316583..317584 /locus_tag="Dhaf_0284" /db_xref="GeneID:7257249" CDS 316583..317584 /locus_tag="Dhaf_0284" /inference="protein motif:PFAM:PF05448" /note="PFAM: Acetyl xylan esterase; KEGG: bpu:BPUM_0297 cephalosporin-C deacetylase" /codon_start=1 /transl_table=11 /product="Acetyl xylan esterase" /protein_id="YP_002456788.1" /db_xref="GI:219666353" /db_xref="InterPro:IPR008391" /db_xref="GeneID:7257249" /translation="MTIIQDAIQQLETIPYRGVPPEDFKEFWLESLRRDAQTKARLEL EAIAYPLSKVEVFSATVLSGDRTKLKGYYMRPRAIDPQEALPGLVRFHGYSGNRGQLS ELLLWALQGYAVLALDVRGQCGETPDTRVYPSGAFSGWLTLGLESPHTHYLRQVYLDG VRAVEALANQPEVDEKRIGCMGKSQGGGLAVIAGGVINALGQEVNLKGGVKAVSAAMP FLADFRSSYQLQKGGPLEELAWYFQLHDPEHQREEGIFTTLDYFDGVHFAPWLGKKTA CLVSMGLKDTVCPPATVYWLYKGICGEKKLLIYPEYEHESPDGFVDRQIEFFAKELL" gene 317822..318094 /locus_tag="Dhaf_0285" /db_xref="GeneID:7257250" CDS 317822..318094 /locus_tag="Dhaf_0285" /inference="similar to AA sequence:KEGG:Cbei_4075" /note="KEGG: cbe:Cbei_4075 hypothetical protein" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_002456789.1" /db_xref="GI:219666354" /db_xref="GeneID:7257250" /translation="MEYQNAKNILPEKLIDEIQKYIQGQTLYIPRKTSHKTGWGEMNG TKAALRERNQSIMRLYRVGSRIEDIAAQYYLSPDSVRKIVSTQNMD" gene 318166..319914 /locus_tag="Dhaf_0286" /db_xref="GeneID:7257251" CDS 318166..319914 /locus_tag="Dhaf_0286" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sth:STH732 two-component sensor histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002456790.1" /db_xref="GI:219666355" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7257251" /translation="MFFNESFFLLVFYSASFNVKIDRGVLLKVKKLKYQLIIPTVIIV FILMSINIVLVFQIQQKQAVNELKEKGLALTQQLDSTWEFLSINQHRINTSAKGDFDF KGLNCSTAGMSIGVIFAEKNGYKIRYVNTNPRNPLNEPDPFEKRVLEKFANDTAIDSY WELVKEEGQRYFCYVTPMRIDETCLECHGEPAGEMDISGYAKEGMKIGDLAGAISITM PTTIQDQALVFNMFWQCMTFTLLIIGCVLAIYYFVTKRVTKPIEHLETAVKQVGEGDL NVDLQNFRAAEEIEGLADHFNNMAKQLKELYSDLEHKVELRTSELGKANEQLQIKQIQ LEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEEQILCEI KENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTA RVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDG IGISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGST FIVLLPIERPQRGDAE" gene 319911..320600 /locus_tag="Dhaf_0287" /db_xref="GeneID:7257252" CDS 319911..320600 /locus_tag="Dhaf_0287" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tpd:Teth39_1796 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002456791.1" /db_xref="GI:219666356" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7257252" /translation="MKIMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEA PDLLILDVMLPGLDGFAVCEKIRSFSDVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPF SSMELDFRIKALLRRPHRLEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEF EVLAFLAKNRGQVFTREQLLDRIWGLDFEGDTNTVTVFIRRIREKIEADPAKPQYILT VWGVGYKFKSK" gene complement(320722..321519) /locus_tag="Dhaf_0288" /db_xref="GeneID:7257253" CDS complement(320722..321519) /locus_tag="Dhaf_0288" /inference="similar to AA sequence:KEGG:ESA_01917" /note="KEGG: esa:ESA_01917 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456792.1" /db_xref="GI:219666357" /db_xref="GeneID:7257253" /translation="MHSWPLYLFTLAIQSAVGGCIMLMLYNILLKKVLAKDTLQKANL KSLTALTVLSVLGLGFSFFDIGYPLNAVNAITNLGASWLSREILFTVLFIALVSVALA ANWKTQHLSQALLAAAGIAGLAVIFAMGSLYSHTIFEPWNSFNTLIGFYGSTIILGAV LINLIFFPVFKNTRGSFEAIKLPTLLAVLAAFIIQFAFIAALGSSLAILNPAMSLVRW FCSALAALLLVYLYFKDPKKSELLYISFGLLLVGELIGRYLFYLPLS" gene complement(321545..322114) /locus_tag="Dhaf_0289" /db_xref="GeneID:7257254" CDS complement(321545..322114) /locus_tag="Dhaf_0289" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: see:SNSL254_A2724 dimethylsulfoxide reductase, chain B" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002456793.1" /db_xref="GI:219666358" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257254" /translation="MSVQYGFYINQSRCSGCHACQTSCNDKNDLEPGRLFRRIKETDG GEFTPFNQGYAHNAYAFFTSISCNHCEHPKCTEACPSGAMHKDPETGIVSVNQNRCIG CRYCTWACPYGAPQYNKEAGRMSKCDFCADLLSQGETPVCVAACPYEALDYGPIEELR AKYGTLADSPDLPSSDETHPNIVLKPHKR" gene complement(322142..324487) /locus_tag="Dhaf_0290" /db_xref="GeneID:7257255" CDS complement(322142..324487) /locus_tag="Dhaf_0290" /inference="protein motif:TFAM:TIGR02166" /note="TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; anaerobic dimethyl sulfoxide reductase A subunit DmsA/YnfE; KEGG: ecf:ECH74115_3747 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family" /protein_id="YP_002456794.1" /db_xref="GI:219666359" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR011888" /db_xref="GeneID:7257255" /translation="MNLSRRSFLKWSATLGAMGTGLMSLTACSQNASLTGSEAASAGE QIIPTASTQDCGGRCLIKAHVKDGVITRISTRGAYEEDEPGANMKACLRGRSYRKHLY HPDRLKYPMKRVGKRGEGKFEQISWEEAIDTIAKETRRIFDQYGPESRYCNVGTGDTG GVIYRMGLGGRFLSATGGHLPLYNSVSMGNTGTATPYVYGVAATASSLDSLKDTKLVI LWGHNTTETIFGASNYYFRQMKNRGCKFICVDPRNSNTAVAFADEWIPLLPTTDNALM DAMAYVIVSENLHDQAFLDQYVQGFDEEHMPEGVPAHESLVSYLFGKKDGVEKTPEWA EAICKVPAETIRRIAREYATTKPAALIQGWGPQRHSCGERTALGATMLASITGNVGVL GGWAGGYIGLSRKGCVGLPDVPNPYPGAIPTLSWVDAIECPEKVTPAEGLLGVDKLNS PIKMLLNLAGDFIANQNPDINRTIRVLEDESLVEFIVVSDLFMTPSARYADILLPGNT FFERYNIGATWNNGDYFILSQKIVDNYYESRSEYDWLAEVADKLGAKDVFTGGKTEEE WVRWIVDETRAKYPETLSWEELEKVGISKFHYDGPRVAFQDQIEDPVNNPFPTPSGKI ELFSKTLYDMHNPEIPAIPVYVPAWEGPEDELTEKYPLQLIGWKTKARDNSTFYNNPW LQQAMVQEVWINPMDAKPRNIVTGDRVKVFNDRGTTMLQARVTSRVIPGVIAAPTGSW FTPDGKGGCTNGNLNVLTTLRKTALSHGNTQHTSLVEISKL" sig_peptide complement(322142..322231) /locus_tag="Dhaf_0290" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.783 at residue 30" gene complement(324490..325125) /locus_tag="Dhaf_0291" /db_xref="GeneID:7257256" CDS complement(324490..325125) /locus_tag="Dhaf_0291" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002456795.1" /db_xref="GI:219666360" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7257256" /translation="MGVHEGRLYVYQLLKHLFEQPLNREGLIELQEQPGLKELAQISS GAQSINDFLVTNKDEYPETLCQALQAEYQRLFVGPGQVLVPIWESVYFDPEHLMFGER TLAVREFYRKYHLESIHKNRQPEDHLAVELEFMTYLIGQYLASEDDVQQTKLLRDQKE FIQKHLATWKDEFLQFLEKSTGCLLYRGGGQLLKEFLDMECETFEHLEEVS" gene 325811..328165 /locus_tag="Dhaf_0292" /db_xref="GeneID:7257257" CDS 325811..328165 /locus_tag="Dhaf_0292" /inference="protein motif:TFAM:TIGR00437" /note="TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; FeoA family protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cbe:Cbei_4196 ferrous iron transport protein B" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="YP_002456796.1" /db_xref="GI:219666361" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR003373" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR007167" /db_xref="InterPro:IPR011619" /db_xref="InterPro:IPR011640" /db_xref="InterPro:IPR011642" /db_xref="GeneID:7257257" /translation="MKLNELEIGRSASIISVGGKGALRQHFLDMGVIPGAIVTMVKLA PLGDPMEVRIHGYELTLRLADAEKIEILPVDDVEQLAEKSKKREFVKHPGLGETGIFH TKADGDPLPDSQLLTFALAGNQNCGKTTLFNQLTGSNQRVGNFPGVTVDRKDGVIKGH ANTLVTDLPGIYSMSPYSNEELVTRQFLLQDKPKGIINIVDATNIERNLYLTIQLMEL NIPMVLALNMMDEVRENGGSIHINEMENRLGIPVVPIAASKNEGIQELVDHAIHVAKN QERPGRMDFCDPDHDNGAVHRCLHAIIHLIEDHAKRAQIPLRFAASKVAEGDEEILKA LNLNQNELELLDHIIQQMEDERGLDHGAAIADMRFKFIKEVCDATVVKPKESKEYARS VAIDNVLTGKYTAIPAFVGIMSLVFWLTFGVIGTWLADGLDLGITWLSELVDMGLTAY GINPVVHSLIIDGIFAGVGSVLSFLPIIVTLFFFLSILEDSGYMARVAFVMDKLLRKI GLSGRSIVPMLIGFGCSVPGVMASRTLPSERDRKMTILLTPFMSCSAKLPIYALFTAA FFPRYGALVMIGLYFAGIVTGIVFALLLKGTMFKGEPVPFVMELPNYRMPGFKNVWQL LWDKAKDFITRAFTVIFVATIIIWFLQYFDPRLNVVSDSQDSLLALVSGIIAPIFVPL GFGDWRISTALITGFMAKESVVSTLTVLLGGSTASLGSMFTPFSAIVFLVFTLLYTPC VAAIASVRRELGGKWAVGVAVMQCVIAWVVALCVHLLGIMMGWV" gene complement(328356..328817) /locus_tag="Dhaf_0293" /db_xref="GeneID:7257258" CDS complement(328356..328817) /locus_tag="Dhaf_0293" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456797.1" /db_xref="GI:219666362" /db_xref="GeneID:7257258" /translation="MNKKKRLLWVALLFILLAFTGCMGSDDQYAPDKAAIETLVNDYF TAAFNIDYTTWTGENELPFLTPDQAQIMQGRFADFKQSFVDNRLTQEVDSVEIIRVNI ETETSGNVYCIIKVSGHDNGSAYRETIEYSIPVKKIEGQWLIDDFKIQSIE" sig_peptide complement(328356..328430) /locus_tag="Dhaf_0293" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" gene 329027..329950 /locus_tag="Dhaf_0294" /db_xref="GeneID:7257259" CDS 329027..329950 /locus_tag="Dhaf_0294" /EC_number="1.1.1.169" /inference="protein motif:TFAM:TIGR00745" /note="KEGG: gtn:GTNG_0527 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_002456798.1" /db_xref="GI:219666363" /db_xref="InterPro:IPR003710" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR013752" /db_xref="GeneID:7257259" /translation="MNITIVGAGATGGYFGARLAASGLNVTFLVREKRAAQLREKGLV IKSVVEDLTLEAPQIAINAEDIPACDLVLLGLKNYQLAASLPQLKVLVNRGAKILPFL NGVEHFEILAKELGQENVLGGVCKIISTLDSEGTIHHTSKVHQIIFGELEPSGKEFCL RLEQAMAKANFKVKYTENILNEIWSKYAFITVFSGVTSAGDLTTDQICAHEATVKVYR RSLEEMKSLADAYGAALSEDFVEQNVEGLPKYAKGSTSSMHQDMRKGLLLEVESLQGA AIRLAGRKNMELPTIETLYGLIKPYEMGSIG" sig_peptide 329027..329089 /locus_tag="Dhaf_0294" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.858) with cleavage site probability 0.783 at residue 21" gene 329982..330866 /locus_tag="Dhaf_0295" /pseudo /db_xref="GeneID:7257260" gene 330941..332212 /locus_tag="Dhaf_0296" /db_xref="GeneID:7257261" CDS 330941..332212 /locus_tag="Dhaf_0296" /inference="protein motif:PFAM:PF00079" /note="PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor" /codon_start=1 /transl_table=11 /product="proteinase inhibitor I4 serpin" /protein_id="YP_002456799.1" /db_xref="GI:219666364" /db_xref="InterPro:IPR000215" /db_xref="GeneID:7257261" /translation="MKKKYRLMVTWALVAVLLGMTLTGCSGNSNVAVGDLMKGINKNP VQLPQEMDGELNQALLDFTWNLFKESGADKGNVMISAPSVYLALGMALNGADGETREA MLKALSAQNIKLEDLNAGLSAWSNSLMDKKNKTDVRIANSIWIRNGFEADPAFLQTNG DYYQAGIRSLDFADPSAPKIINQWVEEKTEGTIDKIIETMDDDLMMYLINAIYFKGDW QEPFKAGSTYTGTFAAPAGGVETPFMRRSGNMDYIQNQGATGVILPYADERFAFVGIL PEEGKSPRDFINTTTAADMLKLISTKKIKNVDLSLPKFASSYENELRDELNALGMDVA FDPFRADFSLMNKAHNKDLFIGGVKHKTYIKVDEKGTEAAAVTGVEVNTTSMPIDLTQ VVFDRPFVYAIIDWQTNSPLFVGIMEDPTIR" sig_peptide 330941..331036 /locus_tag="Dhaf_0296" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 32" gene 332379..333041 /locus_tag="Dhaf_0297" /db_xref="GeneID:7257262" CDS 332379..333041 /locus_tag="Dhaf_0297" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: csc:Csac_0752 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002456800.1" /db_xref="GI:219666365" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7257262" /translation="MSAITKSLPFHLQIYEILKGKILNGEISRGERLYENKISQELGV SRSPVREALRMLEQDELVVVTSTGLIVNPMEFSDMEEIYQCRMALEPFAAKISADKLT NEDLAALRNLVIQARVYHNQKAYEKVVESNTQFHDIIIQSSGNSRLIGIIEKIRSLII LSRKTEFECYQREEGYLDEHEGVLEALTQRNGDEAERLLRIHIMNDFEFYSLAYEKVL KK" gene 333102..333323 /locus_tag="Dhaf_0298" /db_xref="GeneID:7257263" CDS 333102..333323 /locus_tag="Dhaf_0298" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ctc:CTC01781 dihydropyrimidinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456801.1" /db_xref="GI:219666366" /db_xref="GeneID:7257263" /translation="MKTLIKNGTIITASEEQQQASDYTPYEGLRMKGRVAKVLLRGEV IVEEGKYVGKPGDGKFIARQTLRSQNSKV" gene 333658..334986 /locus_tag="Dhaf_0299" /db_xref="GeneID:7257264" CDS 333658..334986 /locus_tag="Dhaf_0299" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_4063 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456802.1" /db_xref="GI:219666367" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257264" /translation="MSNASKQDHEPQNTLVGNVKRTNVRWYVFIAMLVLVTINYVDRA VLSIAMPAIQKDLNLDPAIVGVILSSFFWGYALMQIPSGFLLDRVNPSKVVLGSAVGW GIAQTLTGFVNSAGSLMFFRVLLGVTEAPIMPAGAKLQGIWLPSKERARGATIIDSGA PLGTAVGGPIIIAFMAWFGGWRGALIGAGLMTIILGVICYYILKGNPATHKGVNQAER EYIQTHLAQEQEEAQKETKTELKTSTYLSNKSFWGMCLGWFSFNTVFYGLLTWGPSFL AQTQGIDIKAIGFSTLLIFGCGFVGELVGGQLVDKWRQVGGKYNTVMKTCIGIAGLAT SASIFLLTRASSLTMAIALLSTALFFLRWAGIFWSVPAAIAQRHHVGVLGGCMNFAGN IAGVITPIYIGLIVKFTGSFHAGLLIFVAAGVLLAVAGALINYEKKIGVV" gene 335046..335792 /locus_tag="Dhaf_0300" /db_xref="GeneID:7257265" CDS 335046..335792 /locus_tag="Dhaf_0300" /inference="protein motif:PFAM:PF01177" /note="PFAM: Asp/Glu/hydantoin racemase; KEGG: rpi:Rpic_4023 Asp/Glu/hydantoin racemase" /codon_start=1 /transl_table=11 /product="Asp/Glu/hydantoin racemase" /protein_id="YP_002456803.1" /db_xref="GI:219666368" /db_xref="InterPro:IPR015942" /db_xref="GeneID:7257265" /translation="MRILVINPNISEIVTNLIAQESRRVASPGTELLFATAPFGVEYI ETRMEALIGGYAAACVAAERQGEYDGVIIDAFGDPGLLGIKEMLNVPVVGMTEAALAS ACLLGQRFSIIAISSRIKAWYLETVERSHLTTRLASIRSLNDTLRSIGTVQEDHAKRL KELAMEAVEKDGADVIILAGAPLAGLARSLEGQLPVPVVDGVSSAVRHCESLIALNPG CAMQGSFARPPLKPNKGLPAALAALLDRTR" gene 336031..336828 /locus_tag="Dhaf_0301" /db_xref="GeneID:7257266" CDS 336031..336828 /locus_tag="Dhaf_0301" /EC_number="5.3.3.10" /inference="protein motif:PRIAM:5.3.3.10" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mta:Moth_1492 5-carboxymethyl-2-hydroxymuconate delta-isomerase" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate Delta-isomerase" /protein_id="YP_002456804.1" /db_xref="GI:219666369" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002529" /db_xref="GeneID:7257266" /translation="MERYVRFNNGNKICFGLVKGDRVAELSGEEPADFKESGIEHELS ALKLLAPCHPTKAVCVGLNYKDTVLEPGAQWPKEPLLFIKPSTSVANPGDDIIKWAMA EELAFEAELAVVIGKRAHLVPEEEAHDYIWGYTIANDVTAKDLQKADILWTRSKSFDT FLPLGPWIVSGINADNLMITSSVNGQEKQKGTTADLIFGIEYLVSFISHITTLLPGDI ILTGTPGGYGSSLDVNDKVEIEISEIGKLVNTCKVSSESWSLAPRHK" gene complement(336943..337695) /locus_tag="Dhaf_0302" /db_xref="GeneID:7257267" CDS complement(336943..337695) /locus_tag="Dhaf_0302" /inference="protein motif:PFAM:PF01177" /note="PFAM: Asp/Glu/hydantoin racemase; KEGG: bra:BRADO1491 putative Asp/Glu/hydantoin racemase" /codon_start=1 /transl_table=11 /product="Asp/Glu/hydantoin racemase" /protein_id="YP_002456805.1" /db_xref="GI:219666370" /db_xref="InterPro:IPR015942" /db_xref="GeneID:7257267" /translation="MQKTMFDPAEQKKIGMLTPSSNTALEPICSKMVSGLENLVTMHY SRLEVTKISLEKDALSQFDLDPFLRASEFLAHADVDAIAWNGTSGGWTGFDFDRMVCE KITEATGIPATTSMLAMLEAFEENKVKTLHMVTPYIPAIDELIAKQFEEKCGYQVINS RGLNQTVNRSFSLVTPEQIDGMCKEVSVDPADGISIICTNLRSTWQIEQLERDYGITV YDSTAVTIWKTLKMVGVDPGVVKGWGRLFTGK" gene complement(337862..338548) /locus_tag="Dhaf_0303" /db_xref="GeneID:7257268" CDS complement(337862..338548) /locus_tag="Dhaf_0303" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: cbb:CLD_3218 Crp/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002456806.1" /db_xref="GI:219666371" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257268" /translation="MSCIIPNIYSQPTDTNLWNILLSSGIPRHYQKGEFVFEKDQPSN GLICLKKGKVKVSSFFSEGSEKIFGILVAPALFGETETLDQGPRMVSATALTHVEIVA ISGNKTKELIYTYPDIALSIIQSIGVKLRWTTLQAEDLSTQKIEYRLARLLLDFKHYG IFTSKNNDNCLMITHEELAHFIGTARSKVTTYLNEFAHKGLIRLRRGEIRILDTAGLN KYKYTHKSQA" gene complement(338707..339777) /locus_tag="Dhaf_0304" /db_xref="GeneID:7257269" CDS complement(338707..339777) /locus_tag="Dhaf_0304" /inference="protein motif:PFAM:PF00795" /note="PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aau:AAur_0343 carbon-nitrogen family hydrolase" /codon_start=1 /transl_table=11 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /protein_id="YP_002456807.1" /db_xref="GI:219666372" /db_xref="InterPro:IPR000048" /db_xref="InterPro:IPR003010" /db_xref="GeneID:7257269" /translation="MIEQYMALAIQPTMRGAEKREDIKRNIAHISDVIDAAVWLSGIE MPVRLITIPEGALQGFTDELFDWDHQYYVDHMAIDIPGEETELLGKKAKEYNAYLIAQ AKVKHPEFPGRFFNSAFLIDPKGEVILQSYKMQVFCQEHSTVPHDVWDKWIELYGYKL DSFYSVADTEIGRIGLLVCQEGDYHEPARGLAMNGAEIIYRSSAPEPAVANGWWELQN RARALDNTCYVVAPNVATYYPSQAAELSVDTFGGQSMIVNHHGEVISNHKYGSGSSYA GAIIDVESLREYRERSLFGNWMKDLRTEQFKLIYEEPLFAKNLCLDRAPLKHKDTHEI YRQHVRQLIERGIWVESARSKK" gene complement(340158..341426) /locus_tag="Dhaf_0305" /db_xref="GeneID:7257270" CDS complement(340158..341426) /locus_tag="Dhaf_0305" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lbu:LBUL_1652 major facilitator superfamily permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456808.1" /db_xref="GI:219666373" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257270" /translation="MNAASNRLHHAFLIVVACCAMSLTCSITWNTAGIFFVPILQELG VPRGSLALYLTIVSFSAMLFLPAAGQLLVKFNARKLLSVFVLINAVAVGAMSTYTSVF HFYIGAVFLGVSQAFFLYIATPTMITRWFKARTGFFTGLCMAFTGIGAIIFNPIGGYI IATLGWRSAYLAFGLFIGVVVFPLVALLIRNDPRDMGLLPYGEKSSAEASGNGPEGKY APVITGVPVSVAVKSSAFYVLLLFLASVALFTDINVYYPSIVTSLGQGAVVASTVGSA SMFGALVGKVVLGWINDKSVVGGILFSGISGVAGVAMITFIGTHNATFFLIGAFLYGF GFAQATVQSPVLTRKIFGDRYFTQVYSIVMMFYAAASAIGQSLYGYIADFNGGSYIIP LLMVMGLAAAFTIFGITAYSLRKSIAFDNQ" sig_peptide complement(340158..340250) /locus_tag="Dhaf_0305" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.764) with cleavage site probability 0.319 at residue 31" gene 341841..343814 /locus_tag="Dhaf_0306" /db_xref="GeneID:7257271" CDS 341841..343814 /locus_tag="Dhaf_0306" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gtn:GTNG_0616 putative regulator of acetoin metabolism" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002456809.1" /db_xref="GI:219666374" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7257271" /translation="MLKNYDETEVMTNRVTFLAEGKCPSTGVREEVLASWEKCRERRL DAKTTVIKTLPTISEGEKLPNPIMSFLRDDILPDITKLLYQLLQECQGALFWVYQRNA IVFSQRGNQDFLRQLNQHNIGIGTCLSEEYIGTTAFSLVDKPHEESWVIGHEHYLDLL TPYATYTYYQEDFYGHSYAFIIVPKEAFTDGLLSYFRLFNKARESTIRCYRNSLESDL KSELFNQLSEARNEAVIFIDSFGKIVDANQKFSKWVNVEKAELKDKELTEVLPEMQRI LSCLETGKTITSEEIQLSKLPPHMQFVQMDVKPIESDKKITGLIIILMDNKTFRQRMS KISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSGESGTGKELFAQAIHKAS PRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGKFEYANTGTIFLDEIG EMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKMVKDGSFRLDLYYR INVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKKVREVAPETMAFLINHSWEGNLR ELRNTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYEFEEKKKMLA LMIKFNGNKSAVAEEIGISRSTLYRKLKSYNLL" gene complement(343909..345129) /locus_tag="Dhaf_0307" /db_xref="GeneID:7257272" CDS complement(343909..345129) /locus_tag="Dhaf_0307" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: drm:Dred_0571 crotonobetainyl-CoA:carnitine CoA-transferase" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_002456810.1" /db_xref="GI:219666375" /db_xref="InterPro:IPR003673" /db_xref="GeneID:7257272" /translation="MKSSEIPKFGPLSGVKVISCGLSVAGPFAAAMMADFGADVIFVE SPIVKDQFRTTDSLSYLNKDRRNHRAIVLDVVKPEGKEIFLSLLKDADIFIENSKAGT WDKRGLGDEELWKVNPKLVITHISGYGQTGEPEYLSRGSYDSIGQAFSGFMNMNGEPD GLPAPAPAYMGDYVAGLTGSWATLAAYINAQKTGVGESIDCAQFEALLMIQAGFPSDW INYKIERKRSGASSPTFAGCQPYKCQDGYVYTFFLSTLTLQKGLPLLGLEFGSPDFPS DKYAVFKGTPGAELLHQRLEEFCAVRTVMEAEKELNAHGIVSSAIITYQTMYDHPHYK ARGVFQEYDAFEGGKFIAPAIAPRLKNNPGKVWRAAPSYGKDNEDVLEELGYSSEQIK DFYAKNILKQDPTC" sig_peptide complement(343909..344022) /locus_tag="Dhaf_0307" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.662) with cleavage site probability 0.348 at residue 38" gene 345822..347102 /locus_tag="Dhaf_0308" /db_xref="GeneID:7257273" CDS 345822..347102 /locus_tag="Dhaf_0308" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ljo:LJ0407 hypothetical protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456811.1" /db_xref="GI:219666376" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257273" /translation="MSTATPNKSGGFHYAFVIAIACCGILGTVAALTFNAAGVFYGPV SSALGVGKGTFALYMSILLAVCTITLTFAGSWYSKYSARKILMAIVVINAAAFLLMSQ ATSVYTFYIAGGMMGFCQAFVLYLLAPTMIPRWFKKSAGTFIGIASAFTGVGAIIFNP IAGQTITNSGWQQGYLIYAITTLVIGLPCAFLIRNYPSDMGLKPYGDTGETVAATTAG LTGVSRAFVIKTVVFYVALLFAFCNAFVTNINFYIPVYSTSLGLALTVGATAASASMF GNMIGKFILGAVADKNVRGALFIGQVGSIAGILILYFLGPVNPLFIMGGAFLYAWANA VNSVVIPMVIKEAFGSRDYGKIISNISMALSFSSTIGSSAWGFIVDATNSYAYVFITS AVLMAVSLAAGNYVMNGGKKLPHLTAEQAAKANQ" sig_peptide 345822..345917 /locus_tag="Dhaf_0308" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.784) with cleavage site probability 0.263 at residue 32" gene 347126..348193 /locus_tag="Dhaf_0309" /db_xref="GeneID:7257274" CDS 347126..348193 /locus_tag="Dhaf_0309" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: gka:GK1317 acyl-CoA transferase/carnitine dehydratase" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_002456812.1" /db_xref="GI:219666377" /db_xref="InterPro:IPR003673" /db_xref="GeneID:7257274" /translation="MLSGIKIIDFTRYFPGPVATLRLAERGAEVIKIEDRAGDPARTM FDTINGEEGCVFRSQSRGKKSVVLDLKQKEDYQKVAELIADADVVIESFRPGVAKRLG IDYETMLRINPSLVYLSLSGFGQNTSISSLGGHDLNYMAYSGVLAQLTDEEGRPIKPK LALADLLGGVVSSEEILAGLVQRERTGKGVYLDVSITESMMALLGIHVSHYSVTGEEH GINDHGIAYSIYETKDGRYMTLGALEEKFWKNFCQGVDRMELLPWQGTAPEAGNPYYQ EMVKVFKSKTFKEWAEFSRQVDCCLAPVLAVSELKEQQFVKERNFIEHKWGMDYVATH YRQGKSFLDFAAPYPKLGEHS" gene 348289..349440 /locus_tag="Dhaf_0310" /db_xref="GeneID:7257275" CDS 348289..349440 /locus_tag="Dhaf_0310" /inference="protein motif:PFAM:PF00441" /note="may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="YP_002456813.1" /db_xref="GI:219666378" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7257275" /translation="MDFRMSEEQELLLESLCELIAREVTEADVKTWYENHAVSEKFNK AFIEAGFGFLGIPEEHGGTPADVTTLMLVSEEVVHQTCATIPLLSNILNMYDVVEFGT PEQIKLTMDITKETGSPAFLLAISEPQAGSDNMRMTTTAVHKDGKVILNGSKTWITHG GVAPYALVFAKEDNSDLTNKAISMYLVPSDTPGIKFAPLHKIGQTTTVFAEMYLDNVV CDESCLVGKKGEGFMQLMKNLEVERLLISSFSLGLAQAAMDDAAAYAGQRMQFGKTIG SFQLIQQKLTDMEIKIKNMRNMLYEAAWKADNGISIKLDSALAKRYICMTATEVCYEA MQIFGGLGYTTETRVSRAWQDARGWEFAGGTNEIMVHIAGREIVKKYAK" gene 349483..350253 /locus_tag="Dhaf_0311" /db_xref="GeneID:7257276" CDS 349483..350253 /locus_tag="Dhaf_0311" /inference="protein motif:PFAM:PF01012" /note="YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein YdiQ" /protein_id="YP_002456814.1" /db_xref="GI:219666379" /db_xref="InterPro:IPR014730" /db_xref="GeneID:7257276" /translation="MNIIACFKVVPEEQDITIKPNREISFEKAPLAISAYDLNCIEAG IQLAEAHGASLIGVSVGAAKIDDSKLKKNVLSRGPESIFMIADDQLDNLDTYQTANAL KGLIAKIGDYGLILCGEGSADLYAQQVGPQLGQLLNLPTINSVSKLTLEGDKAIVERT LENEVENLEIALPAVVSVTSDINLPRIPSMKQILAAGKKQATIWKAGDAGVGAVKGTI EVIETKAPEQTDRKQDIVQGDSDESIKEFVAKIREILK" gene 350272..351165 /locus_tag="Dhaf_0312" /db_xref="GeneID:7257277" CDS 350272..351165 /locus_tag="Dhaf_0312" /inference="protein motif:PFAM:PF00766" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ecl:EcolC_1933 electron transfer flavoprotein alpha/beta-subunit" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha subunit" /protein_id="YP_002456815.1" /db_xref="GI:219666380" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:7257277" /translation="MKVFVLAESRKARLELTAGARPYGEQVEVIVIGNDKDSAVADKI WSIPAQEGAMFEDYTETVAALLHQEQPQLLLVEPTKRCKLMAGRLAAMAGTSVMTDLI DLTEDGVGKHLVYGGAAIRKEKAATSLAIVMVGPGVLSGADEGGKGEQEVFPFVQPSH RIQVVSRAKKEKSSVDLASAKRVIGVGRGIAKEEDLGMIRELAAVIHSEVGCSRPIAE AEKWLPKETYIGVSGLMLAPEVYVAVGISGQVQHTVGMNRSKVVIAINKDKNAAIFAQ ADYGIVGDLYKVVPALIEQLK" gene 351242..352534 /locus_tag="Dhaf_0313" /db_xref="GeneID:7257278" CDS 351242..352534 /locus_tag="Dhaf_0313" /EC_number="1.5.5.1" /inference="protein motif:PRIAM:1.5.5.1" /note="PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: pth:PTH_2430 dehydrogenases" /codon_start=1 /transl_table=11 /product="Electron-transferring-flavoprotein dehydrogenase" /protein_id="YP_002456816.1" /db_xref="GI:219666381" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257278" /translation="MSDDRFDAIVVGGGIAGTVTAYLLAKEGLEVMLVERGNYSGSKN VTGGRIYSHSLEKIMPNFAQEAPVERKITREKISLMTEESNVTLDFSSTKLGEQGRDS YSVLRGVFDQWLATKAEEAGVQIIPGIRVDDLILREGKVCGIIAGEDELEANVTILAD GVNSLLAQKLGFRDELQPNQVAVGAKEIIELPAQTIEDRFNCKKGEGTSWLFAGTPSA GKVGGGFIYTNKESISLGVVSTLSELIKANKTLPQMLEDFKAHPSIEPLIKGGKMVEY SGHLVPEGGLTMVPKIIGHGVLVVGDAAGFCINLGYAVRGMDFAVGSAECAAKAVLKA KEAQDFSESSLQCYQLFLDESFVMKDLKQYRNFPHFLEETPRIFDGYPRLAADIMKDL FVVTDNPPQPLMKMMMKNIREIGLLNIAKDCWKGVRSL" gene 352531..352827 /locus_tag="Dhaf_0314" /db_xref="GeneID:7257279" CDS 352531..352827 /locus_tag="Dhaf_0314" /inference="similar to AA sequence:KEGG:Spea_4042" /note="KEGG: spl:Spea_4042 putative ferredoxin" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="YP_002456817.1" /db_xref="GI:219666382" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257279" /translation="MIIKNNVNVDHKLGINKFHVDEENAHIVLKEDNLDMKEYQKLVI ACPAGLYKIDEKGNPQFDYAGCLECGTCRVLCGKTIIEKWELPQGTLGIEFRFG" gene 352853..354385 /locus_tag="Dhaf_0315" /db_xref="GeneID:7257280" CDS 352853..354385 /locus_tag="Dhaf_0315" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: bha:BH2006 long-chain acyl-CoA synthetase (ligase)" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_002456818.1" /db_xref="GI:219666383" /db_xref="InterPro:IPR000873" /db_xref="GeneID:7257280" /translation="MDMRQTFEGLLDYWGGKTPDKEAVYDGLRRMSYGELKREAGQLA KALACLNIQAGDKVLAILPNWHEFIVLFFALAKMEAVLVPCGVSLTAKEISQRCQMIQ PKLAFVSGHDQLRWLEAEAGCCKIIAVRFEDKKAMGYSELLALGEKNREQKLPGKRQD EVMCTIIFTSGTTGAPKGVELTDRSIMQTAISIGIRLESSHRDVFLVPLPCTHLFGIV TGMVVPLYVGAKIVIMERFRAKEALKLIEQEQITVHHGVPTMFIRELEDYKGHEVNLQ SLRTGVAAGAICSEEVLKKITDIFKFNLMVAYGLTEFVGVSMTTLSDTIEDRLKTVGK PYEGIQVRAVHESGRTAEPGEVGELCCKGYGAMKGYYQLPAQTRKVLDAEGWLHTGDL ARIDERGYITIVGRKKEVIIRGGYNIYPREIEEVYYNHPEVMEACVIGLPHQDLGEQT VAFIQLKSHSQQTAALLREYAKGKIAKYKVPDRVLLVEQLPKLSNGKIDKRELGKMAV SL" gene 354416..355054 /locus_tag="Dhaf_0316" /db_xref="GeneID:7257281" CDS 354416..355054 /locus_tag="Dhaf_0316" /inference="protein motif:PFAM:PF03358" /note="PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mth:MTH135 hypothetical protein" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_002456819.1" /db_xref="GI:219666384" /db_xref="InterPro:IPR003680" /db_xref="InterPro:IPR005025" /db_xref="GeneID:7257281" /translation="MKILGINGSHRKGKNTAALLKLVLEETERLGCSTELLELADLDI KLCIACNVCLKQSRCSVAGDDMAMVEHKLLEADGILLGSPVYWSNVTALMKNFMDRSR YLHITRNLLAGKAGAAVTNAGLLHGGQEATLKIMEGFLQAHGLHIVDARNPNTGIFTI GVVGAMMSGFKEDKAVWRRSGADDELVQATSRQLGRNMVALIQQLSGASKMT" gene 355405..355845 /locus_tag="Dhaf_0317" /db_xref="GeneID:7257282" CDS 355405..355845 /locus_tag="Dhaf_0317" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: bvu:BVU_0014 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002456820.1" /db_xref="GI:219666385" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7257282" /translation="MTSFYEYTSGSLGHKLNKSARLITHKLVRNFRESDIKINAEQWK ILLYLYQEDGQTQTSLAESTGKDEPSVSRIVNTMEKFNLVFRTRHPSDRRTNLIFLTE NGRDMRETLMSMGKKTNREVTEGIALQEIETCIRVLDKVIENLS" gene 356030..356554 /locus_tag="Dhaf_0318" /db_xref="GeneID:7257283" CDS 356030..356554 /locus_tag="Dhaf_0318" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: pdi:BDI_1477 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002456821.1" /db_xref="GI:219666386" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257283" /translation="MILETARLILREMTQEDFPALCKILQDDEVMYAYEGAFSLIEAQ VWLDRQIERCRKDGFGLWAVVLKESGEMVGQCGLTMQGYKGGQVLEVGYLFQKESWHY GYATEAAIACKKYAFNELKAQEVYSIIRDSNTPSQNVAKRNGMTCIDEMVKHYRGVDM PHLVYCVKAQQQSN" gene 356584..358140 /locus_tag="Dhaf_0319" /db_xref="GeneID:7257284" CDS 356584..358140 /locus_tag="Dhaf_0319" /inference="protein motif:COG:COG3835" /note="KEGG: nth:Nther_1023 putative transcriptional regulator, PucR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002456822.1" /db_xref="GI:219666387" /db_xref="GeneID:7257284" /translation="MKLNLAVFAYHLADYAPRLYDSEVHGLGIGDVRFIDRQETFLSE SVYIGAWDKLQALIRPPSYVVCIGRDETTDRWLEKHGVKALILDSEVELNEVFERLQD IFQHYNRLESELLEAVLCKEPLNVLLNICAKFFANPTFITDAALCLVATCDNFAHPET DRAWQETIESGRSSSELLLLMKRKKLTNLLNTSRKAEFVNVGENYSKIICANYFDQEV RIATFTVSEAYTPLSPLQAGLVDHVAKLLTAEVRKQHKASSRYLFAIRSNISNLLHGQ KIDGAILKTNFAHIGWTDQEDYRLLKIPLTAAELADGTAGHNRKIYESIFPHYVSLDL NEVLILVIRCARDTEADKRRFAELKKHLKNENAACGVSKTFHDFDMLGEEYKLANAAL EIGSWKYPKEALYFYEDMMLEHLFSEGSRIFNLRSLCHDSVLRIAEHDQQNNSSLLQT LKVYLLQEKSLLAASQELHIHRNTLVYRLGKIEQISGLDLNSPLIRLQGILSCLILEY LNGLEEKAPD" gene 358283..359692 /locus_tag="Dhaf_0320" /db_xref="GeneID:7257285" CDS 358283..359692 /locus_tag="Dhaf_0320" /inference="protein motif:PFAM:PF01571" /note="PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ppu:PP_1944 aminomethyltransferase, putative" /codon_start=1 /transl_table=11 /product="glycine cleavage T protein (aminomethyl transferase)" /protein_id="YP_002456823.1" /db_xref="GI:219666388" /db_xref="InterPro:IPR006222" /db_xref="GeneID:7257285" /translation="MSSDNQRAQFQVVTGNESPAIYHQFSPALETATLLFQMAPGLLV PYEFGGVEYEIDGYRKSAWIGTTLMISPIYDVVGPDAVKFLNSICVNDFTNLTTKGLR HAVICNDQGQVLTDGVVIRIGEDRYRTYWLNPPIDYFLKTSGMNVAGEDLSGTEYFIQ IAGERSLEILEDAFAADLHDIKFATHRKASMDGKEVEIIRLGMSGNLAYEIHGPMAEF DEVYRKVWNSGQKFGARKLGMHAYNLFNHTEAGFPNIHLHYPLPWFESGEDMAKYMLA NPQYSMYNLNRKLVGSVGEELQARFVTPYDVGWGFLVKFNHEFRGRKALEEIAKNPPR TAVTLEWNGDDVGAVFATQFKPGEEACESIGAESEGVFTSNTFRGEMAYRADRVLYNG KDIGISSGRIVSYHYNSMISLGFIDPAYAKGGTELTLIWGTPGTRQMNIRVKVARFPY NGDFVRNENKDVEEIPRHK" gene 359919..360458 /locus_tag="Dhaf_0321" /db_xref="GeneID:7257286" CDS 359919..360458 /locus_tag="Dhaf_0321" /inference="protein motif:PFAM:PF04961" /note="PFAM: Formiminotransferase-cyclodeaminase; KEGG: ctc:CTC02303 formiminotetrahydrofolate cyclodeaminase" /codon_start=1 /transl_table=11 /product="Formiminotransferase-cyclodeaminase" /protein_id="YP_002456824.1" /db_xref="GI:219666389" /db_xref="InterPro:IPR007044" /db_xref="GeneID:7257286" /translation="MEKVASLPSTPAGGSVAALNAASAAALAEMASRLTADKMEDGAL AKELKGMAEVFHSYRVKFTDAIDEDAKVFSEVLSAYKLAADSAENRKIRDEKIQESYK KAVIVPIKLAEDIWAMMQLIKMQHHHIGDSYITDSAQAYMLAEAALKSLLYHIKSNLM YIRDKEFTEKIEEVLEQFG" sig_peptide 359919..360005 /locus_tag="Dhaf_0321" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.619 at residue 29" gene 360617..360928 /locus_tag="Dhaf_0322" /db_xref="GeneID:7257287" CDS 360617..360928 /locus_tag="Dhaf_0322" /inference="protein motif:TFAM:TIGR01439" /note="TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: dau:Daud_1919 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AbrB family" /protein_id="YP_002456825.1" /db_xref="GI:219666390" /db_xref="InterPro:IPR006339" /db_xref="InterPro:IPR007159" /db_xref="GeneID:7257287" /translation="MRTLAKRHSYGVVQMKKKAILTIPKEVRLALHLADEGELFEIIV DNGKIILEPKTLIPKEQEWFWTERWQAGEREAEEDIKAGRVSPAFDNVKDLLEALNNE D" gene 360918..361202 /locus_tag="Dhaf_0323" /db_xref="GeneID:7257288" CDS 360918..361202 /locus_tag="Dhaf_0323" /inference="similar to AA sequence:KEGG:PTH_0397" /note="KEGG: pth:PTH_0397 cytotoxic translational repressor" /codon_start=1 /transl_table=11 /product="cytotoxic translational repressor" /protein_id="YP_002456826.1" /db_xref="GI:219666391" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7257288" /translation="MKIKFTSRFKRSYSKLPKDIQLLFEDKIHQFKENWRHPSFRTHM LKGTNGIWSASLNMEYRFTFSFTFEVDAEGNTVCLLRDIGDHDHIYREPY" gene 361331..361942 /locus_tag="Dhaf_0324" /db_xref="GeneID:7257289" CDS 361331..361942 /locus_tag="Dhaf_0324" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: ckl:CKL_2441 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002456827.1" /db_xref="GI:219666392" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7257289" /translation="MGETKKEILGRFMRLQGLLHRYQAQSFMNFGPWGNPQRGQGRVL ALLKLKPEISQKELTYLLDMSKQGLAELLNKLEKNEFITRETSEEDRRSVNIKLTEKG AAVAGEMGDMPPELEKLFDVLNNEELANLSDYLKRITERLEEQFTDGDGDLRKQMMER LRQCHHHHGRNFGGHRGDFHGFYGGVFPHRRGGRRDDDGEREE" gene 361949..362098 /locus_tag="Dhaf_0325" /db_xref="GeneID:7257290" CDS 361949..362098 /locus_tag="Dhaf_0325" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tpd:Teth39_1908 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456828.1" /db_xref="GI:219666393" /db_xref="GeneID:7257290" /translation="MFAVPFDLRLPEGNQKDEETTFVVQPDLLIIYLAGKRTFWQPRS LHRGI" gene complement(362384..362617) /locus_tag="Dhaf_0326" /db_xref="GeneID:7257291" CDS complement(362384..362617) /locus_tag="Dhaf_0326" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: drm:Dred_3085 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002456829.1" /db_xref="GI:219666394" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7257291" /translation="MAIVDKPLTSTLVLKYQDGLTPAGDPQIKQKSLNYVRPGVDHAV LHEIAVALFSLTEHPLIAVILRDSTELVEEPED" gene 362836..363675 /locus_tag="Dhaf_0327" /db_xref="GeneID:7257292" CDS 362836..363675 /locus_tag="Dhaf_0327" /inference="similar to AA sequence:KEGG:Bsph_3778" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456830.1" /db_xref="GI:219666395" /db_xref="GeneID:7257292" /translation="MRMENSNRTPGQIASEINVIKEQSGKMLLSNAIEIGRRLTEAKE LVPHGEWLKWLTESVSYSRSTASRLMKIFREYGPILSSTDGEEGSNGAPVHHLNYTQG IALFGISVEDRDQFIADNDVGKMSKRELQQTVKVRERTAEEEERREPENQGVQNQEKT EEAADKAMDKPLELIPVERKIIKPKTVPTAQTELQQEDANPESMKYNAQYATHRDTML SAYGELLKTLVALNRVDPVKKEANRKEALKITTNMAETLKQYPPAIKTNLKIKRTEPG APN" gene complement(363868..364482) /locus_tag="Dhaf_0328" /db_xref="GeneID:7257293" CDS complement(363868..364482) /locus_tag="Dhaf_0328" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_2039 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456831.1" /db_xref="GI:219666396" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257293" /translation="MQLEAKDICFRYTSKTAPILSQVNFTLKEGEKLALVGPSGCGKS TLAKILAGYIKPSNGTVLLGGKPLPDQGYSPVQMIYQHPELAVNPRWKMSKIIHECWT PNDELLKDMGIEKEWMSRWPTELSGGELQRFCVLRALGPETRFLICDEITTMLDVITQ AQLWQIILDIANKNRLGLIVVTHNNYLAHKVCDRIVKLTDINHV" gene complement(364503..365366) /locus_tag="Dhaf_0329" /db_xref="GeneID:7257294" CDS complement(364503..365366) /locus_tag="Dhaf_0329" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctc:CTC01902 dipeptide transport system permease protein DppC" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456832.1" /db_xref="GI:219666397" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257294" /translation="MYENKLTPAGKLGLPKINIRTKMLILIIFSAIYLFGILIWGFFM DESLYAVNYTHKFIPPGLEHLFGTDFMGRDMFYRSIKGLSTSLVIGVLASAVSSVLAL LLGIAAATIGGKFDRFVNWCVDCCMGLPHLVLLVLISFMLGRGVKGVAVAVALTHWPE LTRIVRAEVLQIRSSQYVQLSYKAGKSRFWVAKEHMVPHVLPTYLIGLVLLFPHAIMH EAALTFLGFGLPAESPAIGAILSEAMVHIATGKWWLALFPGLLLLIAVILFDVIGENL KKLLNPNSGNE" gene complement(365359..366342) /locus_tag="Dhaf_0330" /db_xref="GeneID:7257295" CDS complement(365359..366342) /locus_tag="Dhaf_0330" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM_0004 peptide ABC transporter permease" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456833.1" /db_xref="GI:219666398" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257295" /translation="MIRTKQTVSILVRMVLLLVAVCVIAFLLITSSPIDPLVSYIGTN STLSEEAKQEISDYWGLNDPLPERFSAWATNVLHGDFGDSITYKKPVRDVIWERFSYS AVLMLIAWTASGVLGFLIGIAAGMRKGSLFDKMVKTFCLCLQSAPTFWLGLLILSLFA VTLGWFPIGMAAPMGKLASDVTLGDRAYHLVLPALTLTIVSISKITLYTRQKLIETMG SDYILFAKARGESDRQLVIRHVLRNIALPAVTIQFASFSELFGGMALAETVFAYPGIG TATTAAALNGDVPLLLGIAIFCALFVFSGNLIANILYGVLDPRVKEGGDYV" sig_peptide complement(365359..365436) /locus_tag="Dhaf_0330" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.907) with cleavage site probability 0.392 at residue 26" gene complement(366391..368019) /locus_tag="Dhaf_0331" /db_xref="GeneID:7257296" CDS complement(366391..368019) /locus_tag="Dhaf_0331" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: ctc:CTC01900 periplasmic dipeptide transport protein precursor" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002456834.1" /db_xref="GI:219666399" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7257296" /translation="MKKKLALVLSVLLMITITACSSGAGKTVEDTPFQNGSAQPPADE IVAYVGGTIFDSSLDPVKGAMSYGYSFTNCALLRVNPDSNYEGDMATEWSISDDALVY TYTLRENVKFSDGSDFTADDVVFTYNTVKENQAHNENVDLTKLASVKALNNYTVQFTL SEPYSPFLDATACLGIVPSDSYDSKTFDQYPIGTGAWIVTQYDSNQQIIVRANENYYE GAPAIKKVTFVSMNSEAAFSNAKSGQLDIVMIGPNYTAEKVAHMTTERFETMDIRMIN LPVLKEQTMKNPDGKEIKVGNNVTSDISVRKALAIGIDRQTIINHAFNGIGKPAVSFT ANLQWANTDTYQDNRKEEAAALLQDAGWVDTDGDGIREKNGIKCEFDVYAPGSDNERF LLANAVAEDALQLGVKINVKTASWDEVAHLQSNSGIVWGWGQYSPTVLNSLFNSQLFL KGAYDNVSGYSNPQVDADIQKAFTSTSHDSAIAAWKAVQATANQDYPYLYIVNIEHCY LVNDSLNLSLDTQIAHPHGHGSPIICNMKDWNYK" sig_peptide complement(366391..366462) /locus_tag="Dhaf_0331" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.513 at residue 24" gene 368378..368758 /locus_tag="Dhaf_0332" /db_xref="GeneID:7257297" CDS 368378..368758 /locus_tag="Dhaf_0332" /inference="protein motif:PFAM:PF08821" /note="PFAM: Protein of unknown function CGGC region; KEGG: pca:Pcar_1583 predicted metal-binding protein" /codon_start=1 /transl_table=11 /product="Protein of unknown function CGGC region" /protein_id="YP_002456835.1" /db_xref="GI:219666400" /db_xref="InterPro:IPR014925" /db_xref="GeneID:7257297" /translation="MKIALFCCSKVTQKLGCSSAQCLYDVKNRVGAFGRYARDIQVEL VGVVNCPGCPSQIAPYRIIAQIENLADFQVEAIHFTNCISTFCAFHENYRLLIERNYP ELEVILGTTPHFTHAQVELVSTNN" gene 368949..369242 /locus_tag="Dhaf_0333" /db_xref="GeneID:7257298" CDS 368949..369242 /locus_tag="Dhaf_0333" /inference="protein motif:PFAM:PF02583" /note="PFAM: protein of unknown function DUF156; KEGG: cpy:Cphy_0690 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF156" /protein_id="YP_002456836.1" /db_xref="GI:219666401" /db_xref="InterPro:IPR003735" /db_xref="GeneID:7257298" /translation="MIIMREKGHSHTHHHTKAVLNRLSRAIGHLESVKRMVEEEKDCS EVLIQLSAVIAALNNTGKVILKDHIEHCIVDAWELGNEEAMENLNKAIDRFIK" gene 369443..370216 /locus_tag="Dhaf_0334" /db_xref="GeneID:7257299" CDS 369443..370216 /locus_tag="Dhaf_0334" /inference="protein motif:PFAM:PF08241" /note="PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002456837.1" /db_xref="GI:219666402" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7257299" /translation="MGISEAKAIGKRWSFCADGYNAIIQNEFSGELSKKWSDLLIGNA PCPAGKVLDVGTGPGFFALLMGSMGWDVHGIDCSEKMIETAVANAQKAGIDAEFSVMD SHSLDFPDNTFDYIVGRNVTWILYEPEKAFKEWLRVLKPGGRLLYLDGNWHYTLNEDW NAARKADEAEYREKYGTPPNSYRGDEKTEEEFKKLLYFNNILRPDWDTEQLPVFGYEK IKVTPRLNEEVYSEEKQLLYRSVPLFMVTADKASIPSKL" gene 370282..371241 /locus_tag="Dhaf_0335" /db_xref="GeneID:7257300" CDS 370282..371241 /locus_tag="Dhaf_0335" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_1117 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456838.1" /db_xref="GI:219666403" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257300" /translation="MWKHGIKKLLQTLFDVAILLFGVTFLSFSLMHLAPGDPAVTILR AGGAMPTEQDIIAKRAEMGLDRPFLEQYGSWLSGFVQGDLGVSMVDGKNVTPRIMNAL KNSLLLAAVSLAAGIAVALPVGVLAAVKKDRAFDKLTCTLAFIRLAMPSFLVGLGLLY VFAYKLKLISVMSSTAGAAGIILPVVTLATGICARMVRQIRATFSAELREPYVNGLRS KGVGELRILFRHVLKNTMLPIMTLIALSFGELIGGTAVVETIFSWPGLGRLALNAINE RDYTIIQGFVVTTSLIFCLLYGLTELSYSFFDPRVKKAKGRTT" gene 371241..372083 /locus_tag="Dhaf_0336" /db_xref="GeneID:7257301" CDS 371241..372083 /locus_tag="Dhaf_0336" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1522 peptide ABC transporter permease" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456839.1" /db_xref="GI:219666404" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257301" /translation="MHDGMKCQRTKIRLAVYIVLTLGLLLVALFGESIAPYDPYKTNV MAIDQPPSYDYWFGTDNLGRCLFSRVLTGARSSLSATLLIVAITGVLGTLIGVAAGYY GGIVDNILKRLLLIFQSFPGQVLAIAIVGVLGAGFGNAVIALGVIGWISYARIARSMV LKIRNAGYVNAARLCGCGSAYIMIHHVIPNISSLLFVTAMNALAGTMLEISALSFLGL SATPPIPEWGFMISEGRKVLMTAPWQTLFPGIAILITVIILNRLGDSVQDYMAVRQQE LSVM" gene 372107..373672 /locus_tag="Dhaf_0337" /db_xref="GeneID:7257302" CDS 372107..373672 /locus_tag="Dhaf_0337" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: amt:Amet_1119 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002456840.1" /db_xref="GI:219666405" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7257302" /translation="MKRRLKGFILLVMAAVILAGCSNTPAAVSPGSESPGTSRTEAGA KHLNVAYHSEIKSLDPGKTSWDTTRIGVGERLFKINDHLELEPWLVQTYQRLDELTWE FILRDDVNFSNGKKMTGESVKACLERTIAMNPRAVTMLNIASIAVDGQKLTVKTNGIN AALPNNMADVVCTILDSDTLSDETGIPVGTGPFVIQSMAEGQMELTANQDYWNGTPKL GSITIKYITDGNAQAMALDNGEVDLAFQLPTENIMQFMGNDRFDVTKSSGSRSQVMYF DFENQFLSDLNVRKAITMAIDRETFADVINKGNSEAATAIFPVSFSYGKIKGVDYDKE GAKKLLADSGYTDSDGDGILDKNGVPMSFKLYSYGSHGSLLPTFCEAIQASLKEIGIG IDIRINDYEPHTNFLKNGGFDLALNSYIMAPVADPQYFADIMLKSGADYNYGKYANPE VDALIAQLDEEFADGKRQELAQEIQKKIVEDCGFLTIGHLKYQIAANKKVTGYSTQAT EYYLLNENTDINA" sig_peptide 372107..372190 /locus_tag="Dhaf_0337" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.689 at residue 28" gene 373708..374649 /locus_tag="Dhaf_0338" /db_xref="GeneID:7257303" CDS 373708..374649 /locus_tag="Dhaf_0338" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: amt:Amet_1120 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002456841.1" /db_xref="GI:219666406" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="GeneID:7257303" /translation="MLEINRLSVAYGNHLALKDVTLAMKSHETYCLVGESGSGKTTLL KAITGLLGEGGRYIEGEVVFEGKELISLPQPELRKLRGAAIATVHQQAGSAMDPIMKV GKQFHEALSVRAKISRRESDRLAQECMKTLALKEPERILKSYPGMLSGGTIQRVALAM AMAMNPTLILADEPTSALDVTVQVEVVGTLKKLQENCSAAMLLVTHNIGVVARMADKI GVMLDGRLIESGSKAQVLSSPAHPYTHMLINSVLNKKGRLPMGPTIYHEEKTQGCSFY NRCPLGCGLCRETLPQTREIGSDHRVMCRLAGEKYAQ" gene 374639..375592 /locus_tag="Dhaf_0339" /db_xref="GeneID:7257304" CDS 374639..375592 /locus_tag="Dhaf_0339" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: tle:Tlet_0198 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002456842.1" /db_xref="GI:219666407" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257304" /translation="MHSNILTIENLTKRYEELTAVDNVSFSIQEGESIGLVGESGCGK STLARLLSGLEAPSSGKALLNGKPIRIEKGRGRKHRVNMVFQDPSDTFAKHMTVFACL YEALSHTRKTSKAEGKSIIRETLRMVEIPEEYMHRRVRQLSGGECQRVAIARALLTEP HLLIFDEATSALDVTVQAQILRLLVRLKQEKKSTYLFISHDLALVSCLCSRVLVMYRG KLVECGTTECIMNYPLHPYTELLISCAEAFMLDTSGTNKELPAIPSAELNAEESGCCF LASCGRRRQVCAEKRPQLTECGPGHQAACFFPYINNERINR" gene 375589..377331 /locus_tag="Dhaf_0340" /db_xref="GeneID:7257305" CDS 375589..377331 /locus_tag="Dhaf_0340" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gvi:glr1300 HlyB/MsbA family ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456843.1" /db_xref="GI:219666408" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7257305" /translation="MRAYGRLLRYVAAIKGEVALKVLIGLAISATYIGQALAMAKAVS IVFARSDLQAIVAPVLIALAAVLLRGFLSRMMESYSKVVAAKVKNKIRLLVFDKILHL GPGYLSDKRSGKVQSLVLDGIESLEPFLVNYIPQIITISISGLAIGIYLTSLDVVTGL IIIVSMLLCVIVPYLTVPLVSRSIVTYWRSYATLNAQYIDAVQGMSTLMAFKASRAKG RELAENAQGFYVQAIRNTTFSLIDSGLMMLLTSVASAITVAIAAYRAESGIFPVMAIS TFLFLAAECARPMSELNGHWHNSFLGLSVAEELFEIVDEELKITEKEHADTVSLDGPL PAVQFQDVTFAYNEEAKPALAGINLEIKGGQTIAVVGKSGSGKSTMVNLLFRFYEPTQ GSILMNGINIKDYGISYLQSKIAVVFQDTYLFYGTVFENIRMSHTDAADDKVIAAAKA AGAHEFIMELPQGYATVVGERGVNLSGGERQRLAIARAILKDAPLLILDEATSSVDAR NEALIQNTLDSLTKGRTTIIIAHRLSTVQNADKIVVLDHGELAEAGTHEELLLKGGIY ADLVRAQRGDENNA" gene 377324..379102 /locus_tag="Dhaf_0341" /db_xref="GeneID:7257306" CDS 377324..379102 /locus_tag="Dhaf_0341" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gvi:glr1301 HlyB/MsbA family ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456844.1" /db_xref="GI:219666409" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7257306" /translation="MPNGESKHETTRIKNTLRLIASMKPYSLEMIATIVTTFLKHIGT IGSAGIVAYMAALAMEGRLLPEFRVLFSWLCVCIVLRAVMYYGEMWFGHDVAYRVLRD FRIKLYDKMETISPAFVLKKRSGQIGATLMSDVEILEWFLAHTFGSFLVAVAITIVLL VLLAKIHILLSLLMMIFSILTIWTPFLLQKKADEQGRQVREKAAEANAVTIEGIQGLR ELLTLNYLERYKGRNKESMQSLYDAQLTYGKRAGTESALMQIFVGVFTVVVMAVTAVF VSQNVLAFEVYPMVVMLSALLFSPIIEVCGVARNLGNVFAAANRIQTVFDTAPVVKDD GKDMDCSSLQHRVVFEHVSFRYDDDLDKVLDNVSFAIEPGQTVALVGPSGAGKSTCIN LLLRYWDAEGGSIRIGGVDIRHMSLDNLRDLTAAVLQDVFLFNVSIRENIRLGRPEAT DGEIEEAAKAAYAHDFIMELPNGYDTIAGERGFCLSGGQRQRIAIARAVLKNPPILVL DEAVSSLDSENEKFIQQALHDKLGDRTTVVVAHRLSTIMAADKLVVLDKGRVVQVGHH SELIAQEGFYKDLVANQVDKSGLLKS" gene 379131..379889 /locus_tag="Dhaf_0342" /db_xref="GeneID:7257307" CDS 379131..379889 /locus_tag="Dhaf_0342" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: amt:Amet_2010 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002456845.1" /db_xref="GI:219666410" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7257307" /translation="MSKLAIINDYWSTQAEAFTEISVDELTSEKNALWKSILKPFVQT DRKLEILDVGCGAGFFEIFLSCLGHHVTAVDFNGKMLAEARKNIEKLGRPELTKLMQM DAQNLAFQDSVFDIVISRNMTWVLENPQRAYGEWLRVLKPHGKLINFDANWFLHLRDD TARRNFEEGQAAVVEHGFELKESDHGGELDNIFRELPLSGCWRPQWDFMTLANMGCEE IAVKFSLPKGLYDEYYEQLYKAIPTFMLCAVKTG" gene 380790..381911 /locus_tag="Dhaf_0343" /db_xref="GeneID:7257308" CDS 380790..381911 /locus_tag="Dhaf_0343" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: tpd:Teth39_0647 periplasmic binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002456846.1" /db_xref="GI:219666411" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7257308" /translation="MKKWLLFLMIPLLILTGCASQVSQNPGQEDGGKENSAEKSTQVI ADMMGREVEVPTKINSIICTGAGALRLIAYAQATDLVIGIEDTDKSGVIGRPYNYVYH DQFKDLPSIGKGGGRGYTAYEEQIIALQPDVIFCSYTSDALDQLAAKTGIPVVSTAIQ GNLFEENTVESLKLIGEILGKEERCAEVIAYLGQYEADLNNRTKDIPEADKPTVYAGA ISNQGGRGFAGTYGGLGPLKAINVSGVMDEVGKKEGFEVDWEQIQVWDPDVIFLDPGN ISLVNEEYAKKPDYFNSLRAVTEENVYSIISFNNYTTNIETAIADAYYAGKVLFPEKF ADIDMEAKVDEIYKKFLGKGIYADMKEAGLSFGKITLGQ" sig_peptide 380790..380861 /locus_tag="Dhaf_0343" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.405 at residue 24" gene 381886..382977 /locus_tag="Dhaf_0344" /db_xref="GeneID:7257309" CDS 381886..382977 /locus_tag="Dhaf_0344" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: tpd:Teth39_0648 transport system permease protein" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002456847.1" /db_xref="GI:219666412" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7257309" /translation="MERLHLVNKGSKLHYREAYGKYMARKRFVILVLIALLLGVALFS ITAGSAGLTLGEVFRTFMGTGTAQAQAIVWNVRLPRILTAIVVGGALALAGCVMQSVL RNPLASSSTLGISHGAAFGAAIAIVYFSAGSQHNAAGSGAISITNPYLVTACAFMGGM ISVFVILVLSRIKTVTPAAMVLAGVALSSLFRGGVALVQYFADDVALASAVYWTFGDL GRTSWHEIGLILIILGPTFVYFMFNSWSYNGIQSGSQTARSLGIHVDQLIIVSMVLAA LLAASAVSFVGIIDFVGLVAPHMVRKFVGSDYRFLLPASMLAGACILLLSDLCSRTII APIVLPIGAITSFLGAPLFIYLIYKGAKK" sig_peptide 381886..382035 /locus_tag="Dhaf_0344" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.819 at residue 50" gene 382980..383759 /locus_tag="Dhaf_0345" /db_xref="GeneID:7257310" CDS 382980..383759 /locus_tag="Dhaf_0345" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE1867 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456848.1" /db_xref="GI:219666413" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257310" /translation="MLKVQELSFQYGSRLVLEDMHFEAPYGHCVAILGNNGAGKSTLI KCLNRILSPRSGQVLLDERDLCSMSRTNVAKEMAYVAQHSETARFTVYDAVMLGRKPY IRFSPTEADYEIVHGMIEKLELSQMSLAYIDELSGGELQKVMLARALTQQPKVLLLDE PTSNLDLKNQHDMLGLVGKIAKEENICVLMVIHDLNLALRYCDRFLFIKDGGIYAYGD EEIMNAKVIGEVYGIPVAIEYAHGAKIVVPFPEQGVKANKA" gene 383817..384341 /locus_tag="Dhaf_0346" /db_xref="GeneID:7257311" CDS 383817..384341 /locus_tag="Dhaf_0346" /inference="protein motif:PFAM:PF02663" /note="PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: amt:Amet_1509 formylmethanofuran dehydrogenase, subunit E region" /codon_start=1 /transl_table=11 /product="formylmethanofuran dehydrogenase subunit E region" /protein_id="YP_002456849.1" /db_xref="GI:219666414" /db_xref="InterPro:IPR000962" /db_xref="InterPro:IPR003814" /db_xref="GeneID:7257311" /translation="MDKQLWEKAVAFHGHECPGLAIGFRACEAVQEKMGLKFSQDEEV VCVTENDACGADAVQVITGCSFGKGNLIYRGTGKMAFSFFSRNTGESMRIVLKPSSSE MDRQERQNYILTAPMDDVFEFKKPGFTLPKQARLFKTVICEVCGEGAPEHKMRLQEGK KVCLDCFEDYSRGY" gene 384614..384922 /locus_tag="Dhaf_0347" /db_xref="GeneID:7257312" CDS 384614..384922 /locus_tag="Dhaf_0347" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: mmx:MmarC6_0051 DNA polymerase beta subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002456850.1" /db_xref="GI:219666415" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7257312" /translation="MVNVNLDKRLVESIQNIGQKYAVERIILFGSRARGDNKGLSDID LVIFPLPEFDKRGSLLSEFDDLRTLLKLDILFHDKHMDSRLLENIKKEGVTLYERTLH" gene 384903..385301 /locus_tag="Dhaf_0348" /db_xref="GeneID:7257313" CDS 384903..385301 /locus_tag="Dhaf_0348" /inference="protein motif:TFAM:TIGR01987" /note="TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: csc:Csac_1585 HI0074 family nucleotidyltransferase substrate binding protein" /codon_start=1 /transl_table=11 /product="nucleotidyltransferase substrate binding protein, HI0074 family" /protein_id="YP_002456851.1" /db_xref="GI:219666416" /db_xref="InterPro:IPR010235" /db_xref="GeneID:7257313" /translation="MSEPYTKLDNFEKAYARLKEGSNRYDGNDDLMRDGLIQRFEFTF ELAWKTLQAVFEDEGLIGLNSPKRILREAFATEVIGNEELWLSMLDDRNATVHIYNEM TAVRICQDIKGKYVPAFGELVERIRERLSE" gene complement(385431..385628) /locus_tag="Dhaf_0349" /db_xref="GeneID:7257314" CDS complement(385431..385628) /locus_tag="Dhaf_0349" /inference="similar to AA sequence:KEGG:Amet_0744" /note="KEGG: amt:Amet_0744 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456852.1" /db_xref="GI:219666417" /db_xref="GeneID:7257314" /translation="MDIAALSVVSNQVQLKQQASLSVMKMVMNASQEQTNSLLAMTAG MSGEMESSVNPHLGSKLDVLV" gene complement(385730..386242) /locus_tag="Dhaf_0350" /db_xref="GeneID:7257315" CDS complement(385730..386242) /locus_tag="Dhaf_0350" /inference="protein motif:TFAM:TIGR02491" /note="TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: emi:Emin_1055 anaerobic ribonucleoside-triphosphate reductase activating protein" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase activating protein" /protein_id="YP_002456853.1" /db_xref="GI:219666418" /db_xref="InterPro:IPR001989" /db_xref="InterPro:IPR012837" /db_xref="GeneID:7257315" /translation="MMDSCIRIAGIIGESIVDGPGIRLVVFAQGCPHHCPGCHNPETH AYEGGKSVAIAEILQRLAMNPLLDGITLSGGEPFAQAAGFALLAQSARQRGFHVMTYS GYTYEELTASSEQNPAWALLLEQTDLLVDGPFQLAERNLLLPFRGSENQRVIDVQESL RQGKVVLASV" gene complement(386242..388611) /locus_tag="Dhaf_0351" /db_xref="GeneID:7257316" CDS complement(386242..388611) /locus_tag="Dhaf_0351" /EC_number="1.17.4.2" /inference="protein motif:TFAM:TIGR02487" /note="Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside triphosphate reductase" /protein_id="YP_002456854.1" /db_xref="GI:219666419" /db_xref="InterPro:IPR005144" /db_xref="InterPro:IPR012833" /db_xref="GeneID:7257316" /translation="MITKIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSLLLAE EVVNYLEVNLHKKVPSVEEIQDAVEKILIERGHARTAKEFILYRAERTRVREMDTRLM KVYEELTFKEAKDNDMKRENANIDGDTAMGTMLRYGSEGAKQFNEMFVLKPEHSKAHK EGDIHIHDMDFLTLTTTCCQIDIIKLFKEGFGTGHGFLREPNDIQSYSALACIAIQSN QNDQHGGQSIPNFDYGMAPGVAKTYIKLYRQNLLKACELLIHQDVDQEELEAHLKDVF SALANQGHTPTLSSDPDYFEQEAALLQTLPNLKLDMPTIRKAQEFAVKKALAETDKKT YQAMEALVHNLNTMHSRAGAQIPFSSLNYGTDTTPEGRMVVKNLLLATEAGLGNGETP IFPIHIFKVKEGVNYNPSDPNYDLFQLACRVSAKRLFPNFSFIDAPFNLQYYVPGRPE TEIAYMGCRTRVIGNIYDPSRETIFGRGNLSFTTINLPRLAIKSHQSRTEFFAMLDEK IDLVINQLLERFEIQARKKVKNFPFLMGQGIWLDSDQLGWDDEIREVLKHGTLSMGFI GLAECLMVLTGQHHGESEEARELGLEIVQQLRRRMDEAGREYGLNFSLLATPAEGLSG RFIKMDRELFGSIPGITDKEYYTNSFHIPVSFPISAFHKITIEAPYHELTNAGHITYV EVDGDPTQNLEAFEKIVRCMKESGIGFGAVNHPVDRDPVCGYTGIIGNECPRCGREES TAPFERIRRITGYLVGTLDRFNDAKKAEVRDRIKHLNCLDSSIGEKGTL" misc_binding complement(388759..388943) /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 126.33" /bound_moiety="adenosylcobalamin" gene complement(389157..392384) /gene="carB" /locus_tag="Dhaf_0352" /db_xref="GeneID:7257317" CDS complement(389157..392384) /gene="carB" /locus_tag="Dhaf_0352" /inference="protein motif:TFAM:TIGR01369" /note="four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate synthase large subunit" /protein_id="YP_002456855.1" /db_xref="GI:219666420" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005480" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005483" /db_xref="InterPro:IPR006275" /db_xref="InterPro:IPR011607" /db_xref="InterPro:IPR011761" /db_xref="GeneID:7257317" /translation="MPKREDIKKIMIIGSGPIVIGQAAEFDYSGTQACKALKNLGYEV VLVNSNPATIMTDAGTADATYIEPLNVQRITEIIEKERPDALLPNLGGQSGLNLSSEL AKAGILDHYGVKVIGVQLDAIERGEDRIAFKETMERLGIDMPKSSPAYTVEEAEKIAQ ELGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGISASMIGQVLVEESVLGWEELEL EVVRDSKNQMITVCFIENIDAIGVHTGDSFCSAPMLTISQELQERLQKYAYSIVEAIE VIGGTNVQFAHDPKTDRVVIIEINPRTSRSSALASKATGFPIALISSLLAAGLTLDEI PYWREGTLDKYTPWGDYVVIKFARWAFEKFKGVEDKLGTQMRAVGEVMSIGKNYKEAF QKAIRSLEIGRYGLGFAKDFNTKTLPELLELLKTPTSERHFMMYEALRQGADPAELAA ITYVKTWFIEQMKELVDLEEKILEYQGRELPAELLIQAKKDGFADRYLAQLLGISETQ VRRQRLGLGLTQAWDAVPVSGVNNASYYYSTYNAPDKVTTSQREKVLILGGGPNRIGQ GIEFDYCCVHAAFALKNLGYETIMINCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEK ERPIGAIVQFGGQTPLNIAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMP QAGMASTLEEALAAAEMIGYPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPER PILIDKFLENAIEAEADAVSDGTHAFVPAVMEHIELAGIHSGDSACVIPPLTIADRHL RTIIDYTQRIAQELHVVGLMNIQYAIAEDKVYVLEANPRASRTVPLVSKICNTPMARL ATELILADYTGQKNDIATNFKPAQISHYGVKEAVFPFDKFPEVDPVLGPEMRSTGEVL GMANSFGLAYFKAQEATHSSLPFSGTVLMSIAEQDRSSGVIEIAQEFLKLGFKIKATQ GTRKFLQDHSIDAEFIHKIEEGRPNITDGIMNGEIQLVINTPIGKRSLKDDSYIRKTA IKYKIPYITTTPAALASAKGIAASQEAAANKTVVKSLQEYHGEIM" gene 392660..393658 /locus_tag="Dhaf_0353" /db_xref="GeneID:7257318" CDS 392660..393658 /locus_tag="Dhaf_0353" /inference="similar to AA sequence:KEGG:Csac_2454" /note="KEGG: csc:Csac_2454 helix-turn-helix domain-containing protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_002456856.1" /db_xref="GI:219666421" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7257318" /translation="MKKYCDICQCEQETQVDNKRETFSVRGEEIETVSDIRICSICRN ELFDEELDTKNLERVYQAYRNKHNLLSPFEIKQIRESIGSGRTVASLLGWSQATFVRY EGGAIPSASHHEQLLRLKNDPTYLNYLYDSNKNKLTDREKRKILAQIDKTDPAAEQDP VDFLNKRFAPFYNKGITNIEFDFEKLAALVQIFAVTNRELVKTKLQKLLYYADNLHFK RYGYPITGLVYIHHHFGPVPVNHDLIHWVLESVGVIETKPYDGLYEGEILMPTERGNQ DLFSNEELEVIFAIAEYFKDFSATKISDFSHKEKGYIETAQREIIPYRYANDLKLS" gene complement(393706..394425) /locus_tag="Dhaf_0354" /db_xref="GeneID:7257319" CDS complement(393706..394425) /locus_tag="Dhaf_0354" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: bce:BC1620 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF81" /protein_id="YP_002456857.1" /db_xref="GI:219666422" /db_xref="InterPro:IPR002781" /db_xref="GeneID:7257319" /translation="MNTYALILIVLIASTMQAATGFGFAIMSIPFLLLLLDPRDAIQL NILLAFIISLMMIYKIRHTVKAATLKRLIMGSLLGTLPGILIFIFLDVRPLKLLISVL LLISTCLLAAKICFKESNTKEFLMGVCSGFLTTSIGMPGPPLMIYYAGTDLDKATIRS TTVAYFVFINLLSILMQTFLYGNSAIVWKSTLISLPFLVLGIVLGQFVFVRLNQQRMQ QLIYLLLFFTSIYLFITTIIV" sig_peptide complement(393706..393771) /locus_tag="Dhaf_0354" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.507 at residue 22" gene complement(394658..395314) /locus_tag="Dhaf_0355" /db_xref="GeneID:7257320" CDS complement(394658..395314) /locus_tag="Dhaf_0355" /inference="protein motif:PFAM:PF06130" /note="PFAM: Propanediol utilization protein; KEGG: drm:Dred_1306 propanediol utilization protein" /codon_start=1 /transl_table=11 /product="Propanediol utilization protein" /protein_id="YP_002456858.1" /db_xref="GI:219666423" /db_xref="InterPro:IPR008300" /db_xref="GeneID:7257320" /translation="MEHNQLIAMITEAVMEQIRPLPKINQIPVAISNRHVHLSQEDAQ TLFGPNYSFKIKKDLSQPGQYACEERVTLVGPKGVIENVRILGPVRPQTQVELSVSDG IKLGITPPVRDSGDLANSAGITLVGPSGSLTLPEGVIAAARHIHMHSTDAARFGVKDR DRVSVTAPGPRGLVFRETLIRVSHNFTLEMHIDIDEANAAALRNQDYVELLLVNHLLP" gene complement(395344..396831) /locus_tag="Dhaf_0356" /db_xref="GeneID:7257321" CDS complement(395344..396831) /locus_tag="Dhaf_0356" /inference="similar to AA sequence:KEGG:Dred_1305" /note="KEGG: drm:Dred_1305 acetaldehyde dehydrogenase (acetylating)" /codon_start=1 /transl_table=11 /product="acetaldehyde dehydrogenase (acetylating)" /protein_id="YP_002456859.1" /db_xref="GI:219666424" /db_xref="GeneID:7257321" /translation="MVLDTDLASIQESRNLVQKAKEAQLHLAHFNEQQIDKILASIVA AVEENAEGLARMACQETEYGIVEHKIAKNLFAARDVYESTKHIKTIGTISEDPDRKVI RYAAPMGVLVGITPRTNPTSTIIHNALCAIKGANAIVFSPHPFAVQCGCATASLINEA AVKAGAPDGVCSCLSMTSLQASHELMHHPDVAAIIATGGPGLVKSAYSAGKPAFGVGS GNVPVFIERSADIKQAVNDIMVSKTFDNGMICASEQAILADQPIKDEVIKELQNQGAY FLSPEEVQKVGRVVIHANGSMNNALVGQSPAVIAQRAGISIPADTALLIAPMEGYGKD YPLSHEKLTTVLGFYVVQDWKEACHLSIELLKLGGIGHSCAIHSQNEQVIREFLAKPV FRIIVNTPSALGGIGQTTGIMPSLTLGCGTWGGSSISENLGPQHLINIKHLTYGLKKV AFHKVPATQGNVSPLLPPTKATSWDIKSDDIDDVVKQVLQQLKIG" gene complement(396851..397141) /locus_tag="Dhaf_0357" /db_xref="GeneID:7257322" CDS complement(396851..397141) /locus_tag="Dhaf_0357" /inference="protein motif:PFAM:PF00936" /note="PFAM: microcompartments protein; KEGG: cbo:CBO2106 ethanolamine utilization protein" /codon_start=1 /transl_table=11 /product="microcompartments protein" /protein_id="YP_002456860.1" /db_xref="GI:219666425" /db_xref="InterPro:IPR000249" /db_xref="GeneID:7257322" /translation="MQQDALGMVETKGLVGAIEAADAMVKAANVHLIGKVLVGGGLVT VMVRGDVGAVKAATDAGAAAAQRVGELKSVHVIPRPHTEVEMILPHDDSGKA" gene complement(397170..397448) /locus_tag="Dhaf_0358" /db_xref="GeneID:7257323" CDS complement(397170..397448) /locus_tag="Dhaf_0358" /inference="protein motif:PFAM:PF00936" /note="PFAM: microcompartments protein; KEGG: cbf:CLI_2149 microcompartments family protein" /codon_start=1 /transl_table=11 /product="microcompartments protein" /protein_id="YP_002456861.1" /db_xref="GI:219666426" /db_xref="InterPro:IPR000249" /db_xref="GeneID:7257323" /translation="MQQEALGMIETKGLIGAIEAADAMVKAANVHLIGNVLVGGGLVA VMVRGDVGAVKAATDAGAAAAQRVGELISVHVIPRPHGEVEMILPKAK" gene complement(397506..398123) /locus_tag="Dhaf_0359" /db_xref="GeneID:7257324" CDS complement(397506..398123) /locus_tag="Dhaf_0359" /inference="similar to AA sequence:KEGG:Dred_1304" /note="KEGG: drm:Dred_1304 ethanolamine utilisation EutQ family protein" /codon_start=1 /transl_table=11 /product="ethanolamine utilisation EutQ family protein" /protein_id="YP_002456862.1" /db_xref="GI:219666427" /db_xref="GeneID:7257324" /translation="MKALITAADIKKASETPEKILTISEADLITPAARDAAKELGVQI TAHPVSLPPTVAPSPAFSPASPLDPALVSRIIEEVMVCLNRSGSPAQPQKEADPGGLR IVKGNSLILEDFATGNPRDQIKIKELFNKKECPLYSAGIMALDKTSYSLTPARDELNY IIEGTLECCIDNRCYTAQAGDTLYIPAQAKIILTAADKVKLFYVC" gene complement(398172..398717) /locus_tag="Dhaf_0360" /db_xref="GeneID:7257325" CDS complement(398172..398717) /locus_tag="Dhaf_0360" /inference="protein motif:PFAM:PF00936" /note="PFAM: microcompartments protein; KEGG: drm:Dred_1303 microcompartments protein" /codon_start=1 /transl_table=11 /product="microcompartments protein" /protein_id="YP_002456863.1" /db_xref="GI:219666428" /db_xref="InterPro:IPR000249" /db_xref="GeneID:7257325" /translation="MESIGLVEVNSIARGIEAADAMLKAAQVDLLEAKPVCPGKYIVL ICGDVAAVQSSVTAGKTMAAHSVLDDFILPNVHPQVLTAISAATPLTLIKALGIIETF SIASLIVAADTAAKTGQVDLVEIRIGMGIGGKSFVTLTGDVASVESSVAAGVMLASER GMLVDKVVIPSPHDHLKRCLC" gene complement(398699..400054) /locus_tag="Dhaf_0361" /db_xref="GeneID:7257326" CDS complement(398699..400054) /locus_tag="Dhaf_0361" /inference="protein motif:PFAM:PF01512" /note="PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: drm:Dred_1302 respiratory-chain NADH dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="Respiratory-chain NADH dehydrogenase domain 51 kDa subunit" /protein_id="YP_002456864.1" /db_xref="GI:219666429" /db_xref="InterPro:IPR011538" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257326" /translation="MREELIEKIKKAGVVGAGGAGFPTHVKVNSKARTVLVNGAECEP LLRVDQQLMAGQASKVVMGLELVMSVTGAKEGIISLKHKYHDAISALEKEISGKPIRI HILDDFYPAGDEHVTVYESTGRLVPQGSIPLKVDCVVHNVETLLNTVDAVADQPVTDT YLTITGEVNQPLTLRLPIGTAISEALAMAGYHDSGGMQVIEGGPMMGKIVADLHQPIT KTTKGLIVLPREHPLLRLKTLPADKVLRQSRVSCVQCRFCTDLCPRYLLGHQLEPHKI MRMVNYGQGQEETMKMAFACSECGVCEQYACIMGLSPRAVNALLKKELTRLGIKPSPS PADQAVDPLQPHRKIPVKRLISRLALQDYDRNAPLQERDYPIDRVAIKLCQHVGAPSV PTVKAGQKVKKGDPIASPPAKGLGSYLHASIDGVVQEITDSILISARKGSETQPWNPS V" gene complement(400047..400337) /locus_tag="Dhaf_0362" /db_xref="GeneID:7257327" CDS complement(400047..400337) /locus_tag="Dhaf_0362" /inference="protein motif:PFAM:PF03319" /note="PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: drm:Dred_1301 ethanolamine utilization protein EutN/carboxysome structural protein CcmL" /codon_start=1 /transl_table=11 /product="Ethanolamine utilization protein EutN/carboxysome structural protein Ccml" /protein_id="YP_002456865.1" /db_xref="GI:219666430" /db_xref="InterPro:IPR004992" /db_xref="GeneID:7257327" /translation="MRIGRVLNSIWATRKADSLIGTKLMIVQLLDRPHGELGPIIVAA DIIGAGIGEKVLVTEGSSARNMDNFNDSPIDSTIVGIIDEEKDKLAEVSKHA" gene complement(400388..401104) /locus_tag="Dhaf_0363" /db_xref="GeneID:7257328" CDS complement(400388..401104) /locus_tag="Dhaf_0363" /inference="protein motif:TFAM:TIGR02529" /note="TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbk:CLL_A1458 ethanolamine utilization protein EutJ" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutJ family protein" /protein_id="YP_002456866.1" /db_xref="GI:219666431" /db_xref="InterPro:IPR013366" /db_xref="GeneID:7257328" /translation="MLAVVDEEGTPVAGAMGFAQVVRDGLVVDYIGAVDILRELKATL EESLGAELLKAGVAYPPGTSPGDQKALHYIAEAAGFNVIAALDEPTAANNVLNIEDGA VIDIGGGTTGTAVIGQGQVVCVADEPTGGTHVSLVIAGAYRLPFAEAEKLKMDSCKHQ ELLPIIKPVIEKIAGIIRQHIQEHPVDQVYLVGGTSCFTGFETIVAAELQRPVIKPAN PFLVTPLGIALAAAKTCSNP" gene complement(401283..402221) /locus_tag="Dhaf_0364" /db_xref="GeneID:7257329" CDS complement(401283..402221) /locus_tag="Dhaf_0364" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: dps:DP3049 hypothetical protein" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_002456867.1" /db_xref="GI:219666432" /db_xref="InterPro:IPR006992" /db_xref="GeneID:7257329" /translation="MNIIDFRFRPNTEAILKGISSNPAFKGMCQSIDFNKMLPQTLEE VVEELDRHHVVKAVISGRDCETTYGAKSNNPSVIEFCHKFPDKFIGFAGLDPHKGMAA LAEITHAVHEEGIKGAAIDPYLARIYVNDAKYYPIYAKCCELGIPLIIATGPGTLVPN AVIDHVAPRYIDFVARDFPELKIIASHGGYPWVNEMITVAQRNANVYLELSEYEFFPQ SSAYIEAANSILSDKIMYASAHPFVDFKLALKNYEQLPLKPEVREKVMYKNAAKVLGL SDGTFSASKAMDAQEVQMIIENVIAQLSQRGLLANR" gene 402525..403919 /locus_tag="Dhaf_0365" /db_xref="GeneID:7257330" CDS 402525..403919 /locus_tag="Dhaf_0365" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: dde:Dde_1270 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002456868.1" /db_xref="GI:219666433" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7257330" /translation="MTQDHWNKFATSQVYQQVIELLPEGVYISDAEGTTIAVNSMYEQ LTGLKGQEVMGENVKVLVEKGVYNLALNPEIVVTGEHKMSVQITKTGRKVLLNGYPIF DDSGKVSFVLTFVRDISLLSQLKEQIADQQEIIDKYREANEQCKKALTSNVEIFESKK MIALMEKLKKIAKTDTTVLLLGETGVGKDVLARKIHQYSPRRKEPFLKIDCSTIPENL IESELFGYEQGAFSGANTKGKVGLFEMADKGTLFLDEIGEIPLQLQVKLLRVLQDQEI IHIGSTKVKKVNVRFIAATNRDLEEEVRKGTFRSDLYYRLRVADLEIPPLRERQEDIR VMMQAFLDKYNAKFRKEISFTKELAEVLLAYKWPGNVRQMDNLIQSLVVTHETESVDV TDLPHYMLLDLSKPEEAGNPSQGKSLDELVADYERNLLKKALDRYKSSSKVAEFFQVD RSTIFRKAKKYKLL" gene 404228..406705 /locus_tag="Dhaf_0366" /db_xref="GeneID:7257331" CDS 404228..406705 /locus_tag="Dhaf_0366" /EC_number="2.3.1.54" /inference="protein motif:PRIAM:2.3.1.54" /note="PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: drm:Dred_2750 formate C-acetyltransferase" /codon_start=1 /transl_table=11 /product="Formate C-acetyltransferase" /protein_id="YP_002456869.1" /db_xref="GI:219666434" /db_xref="InterPro:IPR001150" /db_xref="InterPro:IPR004184" /db_xref="GeneID:7257331" /translation="MSACCLSPHEERIIDPQKGKVNYEGRERVFKILESFQDLRPKID VERAKYFTESFKATEGQPLQLRWAKALMHIAQNITVYIDDQQLIVGRAGAQGRYGIIF PELDGDFLGLAIEQLPQRVESPFNIDPDDAQIIINDVAPYWKGKTFHEELAKALPEDT LKVTYDPADPLASRFIVNETASFRSSIQWVHDYEKVLKRGFKGIKEEAQAKLDQLDPL SPADNMEKRPFLEAVIITCDAIVVWANRHADLAAQMAKLEKDPQRKQELSDIAERCAW VPAHPARNFREAVQSQWFVQMFSRIEQKTGTIISNGRMDQYFYPYYQKDVAEGILNTQ QAIELLECMWVGMAQFIDLYLSPTGGAFNEGYAHWEAVTVGGQTPDGVDATNELTYLF LESKQKFPLNYPDLAARIHSRSPERYLYEVAETVKEGTGFPKLINDEEVVPLLLSKGA KFAEALDYAVSGCAECRMPNRDTYTSGNPYINFAAAIEMTLYNGRMLKYGDEQLGLET GDPTQFETWDEFWKAYLAQQTNFLKHAFIQQHIIIRLRAQHFASPLGSLMHDLCMENY TDLHQPVIKGGIDLGYFELIGYGTVVDSLAAIKKLVYEEKKLTMAELLEAVRNNFEGH EVIREMVMHTPKYGNNDPYSDVIAKEVDRTAVEFTKKYSRELGVHLDLRLVPFTSHVP FGKVVSATPNGRKAWMPLADGSSASHGADVNGPTAVLLSNFFSKNYGYRNRAARLLNI KLSPSCVAGEEGSEKLVSFIRTWCDLKLWHIQFNIVNRETLLAAKQDPDKYRGLIVRV AGYSAYFVDLSSDLQDDIIARTEHEMI" gene 406768..407700 /locus_tag="Dhaf_0367" /db_xref="GeneID:7257332" CDS 406768..407700 /locus_tag="Dhaf_0367" /EC_number="1.97.1.4" /inference="protein motif:TFAM:TIGR02494" /note="KEGG: drm:Dred_2752 glycyl-radical activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein" /codon_start=1 /transl_table=11 /product="glycyl-radical enzyme activating protein family" /protein_id="YP_002456870.1" /db_xref="GI:219666435" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR001989" /db_xref="InterPro:IPR002012" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR012839" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257332" /translation="MGEPKVPERKTGIVFNIQHYSVHDGPGIRTIVFTKGCPLRCPWC SNPESQRLQPQLGFNPNKCLGIKACFRCAEVCAYGAVKLNVEESDRILIDRKLCTDCL QCVDVCPSQALQAFGKPTTVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGDFVAET LKEARRRRLKTTIETCGYVDWSTMEKVCQHLTSLIMDIKCMDPEKHQKYTGASNELIL DNFNKLCEHFPKLPKLIRTPVVPGFNDREEDIREIAEFVKDKPNVTYELLKYHRLGQQ KYHFMGREYPWPDTQLEDVKFEKLKEVAKSIVNQ" gene 407722..408744 /locus_tag="Dhaf_0368" /db_xref="GeneID:7257333" CDS 407722..408744 /locus_tag="Dhaf_0368" /inference="protein motif:TFAM:TIGR00787" /note="TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter, DctP subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctP subunit" /protein_id="YP_002456871.1" /db_xref="GI:219666436" /db_xref="InterPro:IPR004682" /db_xref="GeneID:7257333" /translation="MKKGLLKVSVLILTCLLVFSLSGCSKTEKASADGKIVIRLGHPM APGNNVTVGYEKFKEIVEQKSEGKIEIQIFGNTTLGSDRVTMESTQKGTLEMASCSSP NMASFAREFMVFDLPYITSLEHQPQLYAALNEGELQQYLDNVCGKIGLKPIMYSEFGY RNFVTTKKPITKAADLKGLKVRTTDSPVEVAVAEALGMSATPVAWGETYTALQQGTVD AEGNTWGLLSDAKHGEILEYGIDSGHNYSMHLLMINKKYFEALPEDLQTILVESGKEA LEWQRAVSNDMETEAKQKLIDSGVTLYDLTPAEKEELKTITRPVWDKFPEIPQELIDL VTATQK" sig_peptide 407722..407799 /locus_tag="Dhaf_0368" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.546 at residue 26" gene 408903..410777 /locus_tag="Dhaf_0369" /db_xref="GeneID:7257334" CDS 408903..410777 /locus_tag="Dhaf_0369" /inference="protein motif:TFAM:TIGR00786" /note="TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: drm:Dred_2756 TRAP dicarboxylate transporter, DctM subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctM subunit" /protein_id="YP_002456872.1" /db_xref="GI:219666437" /db_xref="InterPro:IPR004669" /db_xref="InterPro:IPR004680" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR007387" /db_xref="InterPro:IPR010656" /db_xref="GeneID:7257334" /translation="MLDIAKNPENSWKKWLRWIDGNFEKPFLVIGMLAIIMLITYQTL YRYIVSNITGGTAIVGLEELARFIFIWITYLAIPLAIKGRNNIRVDILYDRISDRWQK ISWIMVDSCILVLTGVIFFMGIDHLQMMLNYPQTSPALNIPFFFPYLILPIGFGLMSI RCIQDLVKQALEIGLKDTLIGVLVTAAIFSPLFLKPDVPAMAWLFGYFVLFIFIGVPI AMALGLSALGTILCANTMPIEYISQISFTSIDSFPIMAIPFFVAAGVFMGEGGLSKRL LGLADELLGSFTGGLALATVVTCMFFAAISGSGPATVAAIGSLTIPAMVERGYSRAFA AALVAAAGSIGVMIPPSNPFVVYGVSAQVSIGKLFMGGIVPGLIIGLVLMGISYYYSK KNGWKGEARKRTFRTVGKAFWEAKWALMVPVIILGGIYSGYMTPTESAAVAAFYGLIV GVFIHKGINRKNIVYCFTESCSTSAVIIALMAMATIFGNILTIEQIPTKIATWMLAIT DSKYVILLIITLLLLFVGTFMEALAAIVILTPILLPIVLQVGIDPIHFGIIMVVNLAI GFITPPVGVNLFVASGLAKLKIEEISKAVVPFLLGMIAVLLLISYVPSISMFLTQFVK" gene 410972..412243 /locus_tag="Dhaf_0370" /db_xref="GeneID:7257335" CDS 410972..412243 /locus_tag="Dhaf_0370" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="PFAM: UMUC domain protein DNA-repair protein; KEGG: dau:Daud_0758 DNA-directed DNA polymerase" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_002456873.1" /db_xref="GI:219666438" /db_xref="InterPro:IPR001126" /db_xref="InterPro:IPR005829" /db_xref="GeneID:7257335" /translation="MEKAMMPEHKAKDCDIVLFDANSYYASCHQAVNPELQGKPLLVA GDPRNRTGIILTASYEARFYGVKTAMPLFQALKLCPEAVVLSPDFRLYLDLSRKMWEI VERYTDEDHIEVVSVDECFADFRGSHLLFGSTEEIARRVQKEILEELGLGVSVGVSYC KIFAKLASDYQRDPKTRVKLPRSFTVIAPGELESKVWPLGVGELSGIGRQTEKQLADL GIRTIGDLAQASPQALRKGFGVYGAKLYAWANGRDERPVTPEDQAKDHSIGRSITLPQ DITDPEQGTEVLLFLADSVGRKVRREETKAQTLTVQVKDAEFKTRTYSTTLFEPTDST DVIYRESLKLLAKWPQGKPIRLLGLTASRLQKGIEQLSLFQEESEEQTELDRTVDELR DKYGSGILMRGTQYLSLSRKLAGRSTKDKRE" gene complement(412311..413348) /locus_tag="Dhaf_0371" /db_xref="GeneID:7257336" CDS complement(412311..413348) /locus_tag="Dhaf_0371" /inference="similar to AA sequence:KEGG:CKL_1131" /note="KEGG: ckl:CKL_1131 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456874.1" /db_xref="GI:219666439" /db_xref="GeneID:7257336" /translation="MKIQSSAIVMAGESKHTESYKKEVTLQSWQNKDAAGKPVLNLEN ADILDLSDSIKDRKSPAANVQQAQEISLEMSEGDKRKLELLQLMLEAITGKKLRFFVP QKLVLNDSNRLPFSPTQAPTQGWGIVFESREQYIEQQSMSFSAQGQVTTADGKTIDLQ LQLNISRSFAYQNNISFRAGDAVTIDPLAINLGVSSAQLTQQKYVFDLDYDGNTELIS FLAPGSGFIALDKNGDGIINDGSELFGTKSGDGFADLALYDSDRNGWIDENDPIYDKL RIWTKNEKGEDVLFALGEQGIGALYLGSAATNFSLKDDRNQSLGEIRRTGIYLNENGT VGTLQHVDLTI" gene 413534..414070 /locus_tag="Dhaf_0372" /db_xref="GeneID:7257337" CDS 413534..414070 /locus_tag="Dhaf_0372" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: nth:Nther_2126 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002456875.1" /db_xref="GI:219666440" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7257337" /translation="MSFLELAQKRRSLRSYLPDPVEQEKLEYVLECARLAPSWKNLQC WRFIVVEDADLRQELTTAYAETNPGRKALLQAPLIVVLCGVPAESEVWEGKDYMMLDA GLAMEHLILAAAEQGLGTCWQGLFAEDKVREILKVPENVRVLAMTPLGYPAEERKPRP RKEMSQIVFKGTWGSGNA" gene 414119..414847 /locus_tag="Dhaf_0373" /db_xref="GeneID:7257338" CDS 414119..414847 /locus_tag="Dhaf_0373" /inference="protein motif:PFAM:PF01863" /note="PFAM: protein of unknown function DUF45; KEGG: drm:Dred_2744 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF45" /protein_id="YP_002456876.1" /db_xref="GI:219666441" /db_xref="InterPro:IPR002725" /db_xref="GeneID:7257338" /translation="MPSSLKLGKTIIPYEERKSSRIKRISIRITPEKVRVSAPARTAK GEIQAFIEKNQEWILENWTKLQETMVKPPRVYETGEKVSYLGKELNLEIIDTPHKMIS AFYRKDQETLEIKMPQELQGEQRQEAVREILDKWYKQKARAVFLQKLNLWSRQMGVTY NQFRLKEQKTRWGSCSSLGNINLNWRAVMAPEPVLDYLVIHELSHLIYLNHSAEFWEH VARYCPEHAAHRRWLREKGHSLVI" gene 414949..415788 /locus_tag="Dhaf_0374" /db_xref="GeneID:7257339" CDS 414949..415788 /locus_tag="Dhaf_0374" /EC_number="3.1.1.23" /inference="protein motif:PRIAM:3.1.1.23" /note="PFAM: alpha/beta hydrolase fold; KEGG: ckl:CKL_0532 predicted lipase" /codon_start=1 /transl_table=11 /product="Acylglycerol lipase" /protein_id="YP_002456877.1" /db_xref="GI:219666442" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7257339" /translation="MEQGCQLIQTREGTRIYYRQRLPAHPKAVVMICHGYAEHSSFYV QFMEFLAEHDYGAYALDHRGHGHSEAERGHLDRFEVFLEDLDVFVDHVRELHPTQPLF MFGHSMGGLISFNYGILHPGKLQGQIFSGAALARPVGTEYIPTFLFKLLNVVLKRLRI RPKLSGKTTRNMAVRKISDGDSLVLRYATLGFFYQFACRGVAFAQEKAGRYQLPCLIL HGTGDRLVPYQASQRIFAEIFSRDKTLKLYEGLYHELIHEPEREEVLADIVDWLERRV KFC" repeat_region complement(415949..417512) /note="ISDha8" gene complement(416020..417378) /locus_tag="Dhaf_0375" /db_xref="GeneID:7257340" CDS complement(416020..417378) /locus_tag="Dhaf_0375" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002456878.1" /db_xref="GI:219666443" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257340" /translation="MFNIRQERLFSLEEILETSPRESYALILGPLDINPLLEAVSKKA IFGAPTQLNYTAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEET PVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIEDQLSCTFTELAQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHP YLNPSYILADAGYDYIPIYQQARCIGARALIDYNKRNEQLPEDNDKYFRPICQKGYSY RYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRI AA" gene 417571..418347 /locus_tag="Dhaf_0376" /db_xref="GeneID:7257341" CDS 417571..418347 /locus_tag="Dhaf_0376" /inference="protein motif:PFAM:PF02698" /note="PFAM: protein of unknown function DUF218; KEGG: cth:Cthe_1772 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF218" /protein_id="YP_002456879.1" /db_xref="GI:219666444" /db_xref="InterPro:IPR003848" /db_xref="GeneID:7257341" /translation="MVKRSWGSWLSILAGIIGILDTIVVTGLKGGVNLGTILPAGVGS LFLLWGLWGDKFRNTLFSQRFPGLRKLIRWGIVLLLGSFFIIEGLILWNTEDRRPEQG KVLIILGAGLNGEQLSWTLRERVDKGVGILAENPQMKVVVSGGQGPGEWIPEAEAMAQ YLIGQGIAPERILKEDRSTSTMENFRFSRVLLDQLEGFDPAEPVLVITSDFHMFRSKI LAERNGLNPVGVPCSTPWYIRPNAYLREYFAVVKSILIDR" gene 418381..418908 /locus_tag="Dhaf_0377" /db_xref="GeneID:7257342" CDS 418381..418908 /locus_tag="Dhaf_0377" /inference="similar to AA sequence:KEGG:Krad_2403" /note="KEGG: kra:Krad_2403 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456880.1" /db_xref="GI:219666445" /db_xref="GeneID:7257342" /translation="MLRGSHGDEFSLRIVGYEFPDKDNDLGFDSNWLIVEVYCKHGEK TWVKRDPSLLTWEAGILIKWARDILYKQPESEVLEFIEPNLLFQALRGENGKIETLRV TLGHETCPDWVHTLRKPAYFSMDFAINLEDIEAFCQSLEADLLIYPRRLQGIKELASS PRDRLRIVKKDNDRT" gene complement(418914..421034) /locus_tag="Dhaf_0378" /db_xref="GeneID:7257343" CDS complement(418914..421034) /locus_tag="Dhaf_0378" /inference="protein motif:TFAM:TIGR02074" /note="TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: gka:GK1608 penicillin-binding protein, peptidoglycan glycosyltransferase" /codon_start=1 /transl_table=11 /product="penicillin-binding protein, 1A family" /protein_id="YP_002456881.1" /db_xref="GI:219666446" /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR011816" /db_xref="GeneID:7257343" /translation="MNNSPDPQGKWQAYLSKALAKCRTFKFPAFYKKPKFWRNLAILF LFVLLSGLGAGYYWISTLDVSKLESPLAKPTYIYDQAGNKISQLSSSRIEPVTLEQVP QLAQQAIIATEDKRFYEHQGVDFRSILRALIQDLKTRNFSEGGSTISQQLAKNLFLTS DKTLSRKLKEAGYAIKIEATLSKEEILEAYLNHIYFGEGRWGLQEAARYYFGKNAEEL NLEESALLAGILKGPTIYSPLQDKELALQRRNIVLAMMADQGYITAKEAAQATAAPIA LRTKPLDNLSGKYAPYVDYVIEEAINRYGFTEDQILTLGLQIHTQMDAKVQQAAETVY KDDQFFPQGQSDQKVQSGIAILDQHTGAIRGLVGYRGESAFRQFNHASQLKRQPGSII KPLMVYGPALEKGYRPDALLYDGPLDLDGYAPKDWDGQTRGWVTMEEAIQQSWNIPAV WLFDQIGIDTGKAFVQKAGIPLTEKDAHLSLALGGFAEGVSPLEIAQAYTAFANQGLM HTAHAITKITTADGHVLAQMQPESVQVTEPDHAYTMTLLLQNVVQQGTAPKAALGSRP VAGKTGSVELPPTQEFAGISKGQKDVWFVGYTPELTAAIWMGYDQTDRDHYLTTSGGS GPAVVFHEVLSSALKDTPIKPFEVPAGYVKDWNIWPEGWDDQDEYDQNKDDDKDKKDK KGKKNKKDPKDKNEFWDLFQDLWS" gene 421405..422241 /gene="panB" /locus_tag="Dhaf_0379" /db_xref="GeneID:7257344" CDS 421405..422241 /gene="panB" /locus_tag="Dhaf_0379" /EC_number="2.1.2.11" /inference="protein motif:TFAM:TIGR00222" /note="catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" /protein_id="YP_002456882.1" /db_xref="GI:219666447" /db_xref="InterPro:IPR003700" /db_xref="GeneID:7257344" /translation="MKTTKDFWVMKNEGKKIVMITAYDYPSAKQAEQAGADIILVGDS LGNVVLGYDSTVYVTMEDMIHHGKAAKRGAPNTFIVADMPFMSCHLSIRDTLLNGARL IQETGAQAVKVEGADEMIPHIKALVRAGIPVVSHLGLTPQTAAVLGGFKVQGKDGEAA RKMLEDVKECQEAGAFALVLECIPKQLAQEISTTLTIPTIGIGAGVHTDGQVLVYHDI LTYGVNRAPKFVKAYANADQLMLKGLQDYADEVRSMNFPDDEHSFTMKEEELKTLYGG RG" gene complement(422290..422889) /locus_tag="Dhaf_0380" /db_xref="GeneID:7257345" CDS complement(422290..422889) /locus_tag="Dhaf_0380" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: ape:APE_2080.1 ADP-ribose pyrophosphatase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_002456883.1" /db_xref="GI:219666448" /db_xref="InterPro:IPR000086" /db_xref="GeneID:7257345" /translation="MPLPIVDYKFCPQCGKPLLSVDFSGQHRPHCPDCSFVFWGNFSL GVGGVVWHEGKVLLVQRAHNPGKGNWTIPGGYVEQDEQIAVAITREIREETGIHAKPL SVIALRDRPGEKHDAYVVFLLEYLGGTLQGEPEEVSDLGFFTLEECENLPIAQLSLSV IKASRTLLIPTSPGFLPQTGVKMIGGDQAILYQISKEQE" gene complement(422931..424154) /locus_tag="Dhaf_0381" /db_xref="GeneID:7257346" CDS complement(422931..424154) /locus_tag="Dhaf_0381" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: bay:RBAM_027280 YttB" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456884.1" /db_xref="GI:219666449" /db_xref="InterPro:IPR001958" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257346" /translation="MNTQYLNKFNIPRPILVLIIGGFIHSVGSSFMWPLNSIFMHNIL GRSLTEAGALISLQALATLVGQFISGVLADRFGSRRVMIYGLIGAILPLILISCFPIW EVYAPGLLFYGFAIAFIFVPINALVFTLWPEGGRRGFNLLYVFNNAGVAVGTALGGFI AALSFKLVFLLNGLFFFIYLLMVLIFLPAKDIQSKPLSKSRVKVPIFKDRGFPVLIAL CAAIFLMWGAYIQINTVLPVTMTNLGYSLPQYSILWTLNGVIIVAFQPVIHWIIRHWA PTLSRQFYVSCLFYAIGFLILLGNFPYPSYFIMMIIITLGEMLVLPGVPAAAALIAPE GKTATYQGVVGGAASGGRALGPILGGLAFDHYGGNMAWALALIFVSIALLPFYLYQRR ERTFTQGTGTKEQAI" gene 424407..424991 /locus_tag="Dhaf_0382" /db_xref="GeneID:7257347" CDS 424407..424991 /locus_tag="Dhaf_0382" /inference="protein motif:PFAM:PF02915" /note="PFAM: Rubrerythrin; KEGG: ckl:CKL_2032 Rbr1" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_002456885.1" /db_xref="GI:219666450" /db_xref="InterPro:IPR003251" /db_xref="InterPro:IPR004039" /db_xref="InterPro:IPR009040" /db_xref="GeneID:7257347" /translation="MDFKDSKTFQNLVNGFAGESQARNRYTFYAGVAKNEGHQAIQNI FISTADNEKEHAKVFYKFLQKYAGDQTEVFRVNADYPLNYRDTLANLKSAAAGEGEEV IDYNTFADIADEEGYADIAVAFRKIATVEAHHQERYARLAAELENGTLYKKDEKISWK CENCGYVHEGSGAPDLCPACQHPQGYFKPLPEVY" gene complement(425176..426495) /locus_tag="Dhaf_0383" /db_xref="GeneID:7257348" CDS complement(425176..426495) /locus_tag="Dhaf_0383" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: amt:Amet_3683 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456886.1" /db_xref="GI:219666451" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257348" /translation="MQPYVKSFRYGWSSWSILVIAFITVFFHRLSVGSVADELTREIP MNSVTLGNLTAMNYYAYALMQIPVGILVDRIGVRKINFCGLLVTAAGSILFGLAHTLE AAYLSRFLVGIGSSVIIVSIFKIQATWFPLSRFSVLSGLTSFFGNFGSLLALYPLTFL SLTFGWRNVFYWMAGISLLLALLVLWGVRDARTEIYSPPRETAAAGSTGPTGSVSPLS RKHSQTPEHTSTAVKPLPFLAYLKESLSCVLKNPRTWPNVLILFAFTGSSTTLLGLWG IPLMTQLYSLDKATAAGYVTFATFGFILGAPLISLWVRLLKGIRPALLAGTGLNLLLW IYIVIIAGGRPAAELWPAFFFIFGLLIMTHILAFSNVTAVNPLNYSGMATAITNMAEF IGSSLASLTIGLILDFSGNPSAAWWVILSMAALGFMAALLIKEQPAS" gene 426656..427084 /locus_tag="Dhaf_0384" /db_xref="GeneID:7257349" CDS 426656..427084 /locus_tag="Dhaf_0384" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA domain protein; KEGG: drm:Dred_2171 UspA domain-containing protein" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_002456887.1" /db_xref="GI:219666452" /db_xref="InterPro:IPR006015" /db_xref="InterPro:IPR006016" /db_xref="GeneID:7257349" /translation="MYKKILVPTDGSEFSVRAFKTAVELAGLFQSEIVLIHVTYTPQA LWGNTVPYGYVFSQEDVAKNGQMALDATMAEVSAEGVPTKTVLEIGHPVIKIIDQIKK DGIDLVVIGSHGYGPITGSVLGSVSQRVLQKSPVPVLLVK" gene 427270..427683 /locus_tag="Dhaf_0385" /db_xref="GeneID:7257350" CDS 427270..427683 /locus_tag="Dhaf_0385" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456888.1" /db_xref="GI:219666453" /db_xref="GeneID:7257350" /translation="MKEKEIRLTSEEIDYLLKGTIHWEDIASRTAGPLRKTVDLGTRE AESGDFLKKPSFKDIEQTKVPDRGPFNSEGQGRNFNHNEKGRESFNFKEDTDEDFAED FLAEDQPFWSGTKVYIILSLTGCITLGTWAYFVFA" gene 427910..428380 /locus_tag="Dhaf_0386" /db_xref="GeneID:7257351" CDS 427910..428380 /locus_tag="Dhaf_0386" /inference="protein motif:PFAM:PF05848" /note="PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: sth:STH3136 transcriptional repressor of class III stress genes" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CtsR" /protein_id="YP_002456889.1" /db_xref="GI:219666454" /db_xref="InterPro:IPR008463" /db_xref="GeneID:7257351" /translation="MGNLADRIEVYLKRILEQSAEGYVILQRGVLAEEFSCAPSQINY VLDTRFSVERGYLVESRRGGGGYLRIVRLGFHDDGDFQTIMKQLIGSQLGESRAFNLL QRLVEDEIITRREEEIIRTVFHRETLGPESPTINGLRAHMMKRILLTLSREDLH" gene 428397..428894 /locus_tag="Dhaf_0387" /db_xref="GeneID:7257352" CDS 428397..428894 /locus_tag="Dhaf_0387" /inference="protein motif:PFAM:PF02151" /note="PFAM: UvrB/UvrC protein; KEGG: mta:Moth_0160 UvrB/UvrC protein" /codon_start=1 /transl_table=11 /product="UvrB/UvrC protein" /protein_id="YP_002456890.1" /db_xref="GI:219666455" /db_xref="InterPro:IPR001943" /db_xref="GeneID:7257352" /translation="MLCQHCQQREANVQFTKIVNGEMVKLYLCDHCAKNAPEVSFVFS PGIIPDFLQSLFNFTTNAQALKEEACPQCGRRLSEITQAGKLGCSGCYDKFQSELEPI LRKIHGGGCHVGKIPARKGADLREKAEIEKLKEKLQQLIRKEEFEAAAVVRDQIRELE QKLGG" gene 428899..429951 /locus_tag="Dhaf_0388" /db_xref="GeneID:7257353" CDS 428899..429951 /locus_tag="Dhaf_0388" /inference="protein motif:PFAM:PF00217" /note="PFAM: ATP:guanido phosphotransferase; KEGG: mta:Moth_0161 ATP:guanido phosphotransferase" /codon_start=1 /transl_table=11 /product="ATP:guanido phosphotransferase" /protein_id="YP_002456891.1" /db_xref="GI:219666456" /db_xref="InterPro:IPR000749" /db_xref="GeneID:7257353" /translation="MERKEHLLKNSEWMRENPDTPVVLSSRIRLARNLEGVPFPLGLS QEAAQDIEQKVSAELEALTIDQDKLTYYSMKDLTPIEQYVLIEKHLISPALVNSRGAR GVAINSDHRVSVMVNEEDHLRIQVLLPGDQLKEAYLLSNTMDDQLEERLDFAYREAQG YLTACPTNVGTGMRASVMVHMPALVMTNRVQQLLGALNHLGLAVRGLYGEGSQAFGHI YQVSNQITLGKSEEDTITHLEAVTRQIIEQEVHAREGLVREAPLVLQDKVWRARGTLE KARLLNSEDALQCLSLDRLGVDMGILPPRQQSFSTLLVETLPASLQYGLERELSPEQR DEERASYMRKAMAEVK" gene 429989..432469 /locus_tag="Dhaf_0389" /db_xref="GeneID:7257354" CDS 429989..432469 /locus_tag="Dhaf_0389" /inference="protein motif:PFAM:PF07724" /note="PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: hmo:HM1_1344 ClpC ATPase" /codon_start=1 /transl_table=11 /product="ATPase AAA-2 domain protein" /protein_id="YP_002456892.1" /db_xref="GI:219666457" /db_xref="InterPro:IPR001270" /db_xref="InterPro:IPR001943" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004176" /db_xref="InterPro:IPR010448" /db_xref="InterPro:IPR011704" /db_xref="InterPro:IPR013093" /db_xref="GeneID:7257354" /translation="MNEKYTEKALKALQFASDEAKRMGSNVIGTEHLLLGLVAEGEGI AAKSLHGIGVTPEKIREQIGNLTGIGQPFTGEVSLTPRVKRVMELAHEEARRHGVSYI GTEHLLLGLLMEGEGVAARVLRNLGVSPERIWKQVVQLLGGQPDDIPMPGGAPGPGTA KNNGAANTPALNEFGRDLTQQAREGRLDPVVGREDEIERVVQVLSRRTKNNPVLIGEP GVGKTAIAEGLAQRIINNKVPETLAGKRVVTLDLSAVVAGSKYRGEFEERLKKVMEEI RVDGRIIVFIDELHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKYIEK DPALERRFQPITVGEPTVEQAVQILLGLRDRYEAHHRTQITDEAVEAAVKMSDRYISD RFLPDKAIDLMDEAASRVRLAAFTAPPDLKSLEEKIEALKSEKEAAVLGQEFEKAAKF RDEEHQLREELAQLRNTWESKRDISQSQVTADDIAQIVASWTGIPVKKLAQEESERLL GLEETLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARAL AEALFGEEDALIRIDMSEYMEKHAVSRLVGAPPGYIGHDEGGQLTEAIRRKPYSVILL DEIEKAHPEVFNILLQVLEDGRLTDTKGRTVDFRNAVIIMTSNVGASFMKKEALGFAS RRDEETEYKNMSSRVMEELKKTFRPEFLNRVDEIVVFHSLQTEGLLKITEILMKQVNG RLQEQGYDLQVEKSALELIAKEGNDPTFGARPLRRAIQRLIEDSLSEKILLGEFKSGD KIKVEAVEDKMKFAKVRARKSKKAEAAE" gene 432722..434071 /locus_tag="Dhaf_0390" /db_xref="GeneID:7257355" CDS 432722..434071 /locus_tag="Dhaf_0390" /EC_number="2.1.1.63" /inference="protein motif:TFAM:TIGR00416" /note="Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents" /codon_start=1 /transl_table=11 /product="DNA repair protein RadA" /protein_id="YP_002456893.1" /db_xref="GI:219666458" /db_xref="InterPro:IPR001553" /db_xref="InterPro:IPR001984" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004504" /db_xref="GeneID:7257355" /translation="MAKVKTRFFCQSCGQESPRWLGKCPGCGEWNTLVEEVVERAAAK RTPLGVKATPLTEIQIREEERVSSGSQELNRVLGGGIVPGSFVLLGGEPGIGKSTLLL QTAGLLAKGMDVLYISGEESEKQIKLRAERLGIKESRLHILTETRLEVVRDVALAMGP GLLIVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAG PRVLEHIVDTVLYFEGDRHHVYRLLRAVKNRFGSTNEIGVFEMHEDGLVEVPNPSKVF LGENSATAPGSSVAVIVEGSRPLLVEIQALVTPTTYGPPRRTATGIDYNRILMLLAVL DKKVGLHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSLGERPLKRYALVGEVGLTG EVRGISQIEKRVKEAVKLGFEGCIIPRINVSAVKVPGNFTVIAVKTVEEAVQVMFEQ" gene complement(434207..434599) /locus_tag="Dhaf_0391" /db_xref="GeneID:7257356" CDS complement(434207..434599) /locus_tag="Dhaf_0391" /inference="similar to AA sequence:KEGG:CHY_2345" /note="KEGG: chy:CHY_2345 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456894.1" /db_xref="GI:219666459" /db_xref="GeneID:7257356" /translation="MENLTDRYQILVESLLIRHQSVLDILTKGQEASARVNRAVVKTV TDCGCLSIDARKKPIPEEASFSDLKSLLDSQLDGELCESCKDIIETELGKQLFYIAAL ANTLGISLDDVIQKEETRLSTLTIFNLT" gene 434801..435277 /locus_tag="Dhaf_0392" /db_xref="GeneID:7257357" CDS 434801..435277 /locus_tag="Dhaf_0392" /inference="protein motif:PFAM:PF02559" /note="PFAM: transcription factor CarD; KEGG: drm:Dred_0185 CarD family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CarD family" /protein_id="YP_002456895.1" /db_xref="GI:219666460" /db_xref="InterPro:IPR003711" /db_xref="GeneID:7257357" /translation="MFDIGDRVVYPMHGAGIIEAIEEREVLGESHQYYVMNIPVGNMK VYIPLKNVNQLGIRGVISSEEVPQVLKILENESTLPALAWNRRYRANMDRIKSGDIYS VAEVVRSLSQRDREKGLSTGEKKMYDNAYQILVSELILAEGVQADEMSERIKGLLA" gene 435359..436525 /locus_tag="Dhaf_0393" /db_xref="GeneID:7257358" CDS 435359..436525 /locus_tag="Dhaf_0393" /inference="protein motif:PFAM:PF01850" /note="PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; KEGG: mta:Moth_2488 PilT protein-like" /codon_start=1 /transl_table=11 /product="PilT protein domain protein" /protein_id="YP_002456896.1" /db_xref="GI:219666461" /db_xref="InterPro:IPR002716" /db_xref="InterPro:IPR002792" /db_xref="InterPro:IPR006596" /db_xref="GeneID:7257358" /translation="MIRNIVRVIITVLAGAIGFYLNVVLMRLDVLQSLGWQISPIWAF VAMVAIFAILGFLIAPASMRGFLKMISWFDARMTKVPTHDLIGGAVGVIIGLIIASLL SSALRGIPIIGSVISIILSVSLGYLGLIIGVKRKEEVLGFFTFLPKFKGDKGEKGKGK DGNRQSLGAALPNYKILDTSVIIDGRIADIVQTGFLEGTLLIPGFVLEELQHIADSSD LLKRNRGRRGLDILNQISKEELANNVEIMEIDFEDISEVDSKLVRLGQNLGAPILTND YNLNKVAELQGVKVLNINELANAVKPIVLPGEEMEVQVMKEGKEPGQGVAYLDDGTMI VVDTGRRYMGQTITVLVTSVLQTAAGRMIFAKPKALVEKKSIGLSGTNEVNALG" gene 436518..437246 /locus_tag="Dhaf_0394" /db_xref="GeneID:7257359" CDS 436518..437246 /locus_tag="Dhaf_0394" /inference="protein motif:TFAM:TIGR00453" /note="TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: bha:BH0107 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" /protein_id="YP_002456897.1" /db_xref="GI:219666462" /db_xref="InterPro:IPR001228" /db_xref="GeneID:7257359" /translation="MVKLGVIIPAAGQGKRMGASVNKQFLPLQGRPLLAHTLSLFERS GAVAEIVIVSAKEDRERIAELVRTEGFQKVSAIVLGGEERQESVFAGVKALSSLIQRV AVHDGARPLLTCLELNRFFTEAEKFGAAIMAVPVKDTIKRVDAQGKVLETPPRETLRA VQTPQVFARSLLEEAHHKAREAGYLTTDDAALIEWLGHPVQTLMGSLENIKITTPEDL DLAEAILAKRMNQVNHGDRSLDSL" gene 437336..437812 /locus_tag="Dhaf_0395" /db_xref="GeneID:7257360" CDS 437336..437812 /locus_tag="Dhaf_0395" /EC_number="4.6.1.12" /inference="protein motif:TFAM:TIGR00151" /note="KEGG: pca:Pcar_0102 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase" /codon_start=1 /transl_table=11 /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /protein_id="YP_002456898.1" /db_xref="GI:219666463" /db_xref="InterPro:IPR003526" /db_xref="GeneID:7257360" /translation="MLRVGIGYDVHALVAGRPLILAGIDIPHEKGLLGHSDADVLTHT LMDALLGALALGDLGKHFPDTDERYRGISSMKLLEQVMKLLEERGYAIGNIDCIIAAQ RPKLAPYIPQMRENLARALKTDLENVSVKATTTERLGFEGREEGISSQAIVCLVKV" gene 437843..439309 /gene="gltX" /locus_tag="Dhaf_0396" /db_xref="GeneID:7257361" CDS 437843..439309 /gene="gltX" /locus_tag="Dhaf_0396" /inference="protein motif:TFAM:TIGR00464" /note="Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="YP_002456899.1" /db_xref="GI:219666464" /db_xref="InterPro:IPR000924" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR004527" /db_xref="GeneID:7257361" /translation="MLKVRFAPSPTGPLHIGGARSALFNYLLARKEDGVFIVRSEDTD LERSSRESEHNIMEALRWLNIQWDEGIEVGGDNGPYRQTERLALYQEYTDRLLASGDA YYCYCSEEELEQERQDLMAKGETPRYLGKCRHLSAAERQTYEAAGRKPVVRFRVPEGR QILINDRVRGEVVFDSDGIGDYVIVKSDGIPTYNFAVVIDDTTMNITHVIRGEEHLSN TPRQVLIYQALGLPTPEFAHISLILNTEGKKMSKRDGDTAVIDYQAKGYLPEAVVNFI ALMGWSPPGEEEFFTLEEMTQAFSLERVSKSPAVFDLNKLNYMNAHYIKQADPERLTD LAVPYLREMGAIPQGTLSEEERAWVTHYVQAIINHLSYMAQVKDFVHYVQGGEAPTPE GEALEILQGEQVPAVLDLFVEKLKSLEAIRVDTVKPLFKQITKETKLGGKQVFMPIRI ALTGQMHGPELYDIVPLLGLENVLSRLAGTKALLAGSR" gene 439788..440459 /locus_tag="Dhaf_0397" /db_xref="GeneID:7257362" CDS 439788..440459 /locus_tag="Dhaf_0397" /inference="protein motif:TFAM:TIGR01172" /note="TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; KEGG: mta:Moth_2485 serine O-acetyltransferase" /codon_start=1 /transl_table=11 /product="serine O-acetyltransferase" /protein_id="YP_002456900.1" /db_xref="GI:219666465" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005881" /db_xref="GeneID:7257362" /translation="MVFGQIKQDIKVIFERDPAAKTIVEVILCYPGLHALIAHRLAHC LYKKNMVLIPRLISQTSRFFTGIEIHPGAKIGQGLFIDHGMGVVIGETAEVGDNVTIY QGVTLGGTGKEKGKRHPTVGNNVFIGSGAKILGSIKIGDNVKIGAGSVVTKPVPSNTT VVGVPGKVVSRHGMPLKELHVVTKSVCNKEIRAEEMPDPVQETLQILMERINYLEKKL GEKES" gene 440465..441898 /gene="cysS" /locus_tag="Dhaf_0398" /db_xref="GeneID:7257363" CDS 440465..441898 /gene="cysS" /locus_tag="Dhaf_0398" /EC_number="6.1.1.16" /inference="protein motif:TFAM:TIGR00435" /note="catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="YP_002456901.1" /db_xref="GI:219666466" /db_xref="InterPro:IPR002308" /db_xref="InterPro:IPR015273" /db_xref="InterPro:IPR015413" /db_xref="InterPro:IPR015803" /db_xref="GeneID:7257363" /translation="MALRLFNTMSHQKEEFKPREEGKVGMYTCGPTVYNYFHVGNGRM LVVFDMIRRYLLYKGYDVTFVQNFTDIDDKIIKRGQEEGRDPLELAQDYIGEYFKDAA ALNLMPASIHPKATDHIPEMIEIIKGLEEQGLAYAVDGDVYFAVDKLPAYGKLSGRTL EDMQAGARVEVGERKQNPMDFALWKNAKPGEPFWESPWGKGRPGWHIECSAMSLKYLG SGFDIHGGGGDLVFPHHENEIAQAEGYLHGETFARYWMHNAFLTINQQKMSKSLGNFF TVREILEHFPGEVIRFYLLGTHYRSPLDFDDENLQMAQKGLERLQTSIRLADEALGRQ GQNSADAASGQKLRAAAEEARREFAEAMDDDFNSALAYASLFELGKAINAHVQAYPYS SEGLLKARATLWELADVLGFDLAKPANQAEAGNQKLDQVMELLLEVRAIARKKKDWEM SDLIRDRLKDLGIVLEDTPQGARWTLK" gene 441950..442402 /locus_tag="Dhaf_0399" /db_xref="GeneID:7257364" CDS 441950..442402 /locus_tag="Dhaf_0399" /inference="protein motif:PFAM:PF00636" /note="PFAM: ribonuclease III; KEGG: sth:STH3118 hypothetical protein" /codon_start=1 /transl_table=11 /product="ribonuclease III" /protein_id="YP_002456902.1" /db_xref="GI:219666467" /db_xref="InterPro:IPR000999" /db_xref="GeneID:7257364" /translation="MNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAG TQAKLLHHILPHLDEQELSVVHRGRNAKGGHPKSTDVVTYRYATGFEALVGYWQLTGR TERMLWAFEQVDQFVGEEDEGKGKGETAKEEESITDALSPAEQSEIDC" gene 442434..443138 /gene="thyX" /locus_tag="Dhaf_0400" /db_xref="GeneID:7257365" CDS 442434..443138 /gene="thyX" /locus_tag="Dhaf_0400" /EC_number="2.1.1.148" /inference="protein motif:TFAM:TIGR02170" /note="flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor" /codon_start=1 /transl_table=11 /product="FAD-dependent thymidylate synthase" /protein_id="YP_002456903.1" /db_xref="GI:219666468" /db_xref="InterPro:IPR003669" /db_xref="GeneID:7257365" /translation="MNVELIQYTPDPEKVIAAAARLCYSPDPVPELMEKLDEEKVANL VQKLRAMGHLSTFEHISFQFSIDGVSRALSHQLVRHRIASYSQRSQRYVKEEGFDFVT PPTIRRNPQTQERFENIMATLQEEYQALLAMVPAEDARYILPNACTTSLMATFNARSL LNFFEHRTCMRAQWEIRILAEKMLELVREVAPNVFGQAGPTCVTQGVCHEGAMSCGRI KALKKEAERMTLIYDR" gene 443128..443868 /locus_tag="Dhaf_0401" /db_xref="GeneID:7257366" CDS 443128..443868 /locus_tag="Dhaf_0401" /inference="protein motif:TFAM:TIGR00186" /note="TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: drm:Dred_0196 RNA methyltransferase" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, TrmH family, group 3" /protein_id="YP_002456904.1" /db_xref="GI:219666469" /db_xref="InterPro:IPR001537" /db_xref="InterPro:IPR004441" /db_xref="InterPro:IPR013123" /db_xref="GeneID:7257366" /translation="MTDEIVYGRNAVWELLQSGKPVNKLLLQGEGTAGRFQDIVSHAR AQKIPFQFVDKAALDRLTEKAKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLD EVEDPHNLGALIRTADAAGVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQ TLKDLQKAGCWVSGAEAEGTEVYRSDLTGARVIVIGSEGKGLSRLVKETCDEIVSLPM KGRINSLNASVAGSILMYEVLRQRGSRN" gene 444130..444783 /locus_tag="Dhaf_0402" /db_xref="GeneID:7257367" CDS 444130..444783 /locus_tag="Dhaf_0402" /inference="protein motif:TFAM:TIGR02859" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-70" /protein_id="YP_002456905.1" /db_xref="GI:219666470" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR000943" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014218" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257367" /translation="MTLNAQLEALEECDTNEVIVDEEVVELAKNGDAEAQEYLINKYK NFVRAKARSYFLIGADREDIIQEGMIGLYKAIRDFRGDKLSSFRAFAELCITRQIITA IKTATRQKHIPLNSYVSLNKPIYDEDSDRTLLDVISGTRITDPEELIISQEEFDDIEE KMGEILSSLEWKVLMAYLEGKSYQEIAVDLHRHVKSIDNALQRVKRKLERYLERRDG" gene 444973..445056 /locus_tag="Dhaf_R0022" /note="tRNA-Tyr1" /db_xref="GeneID:7257368" tRNA 444973..445056 /locus_tag="Dhaf_R0022" /product="tRNA-Tyr" /db_xref="GeneID:7257368" gene 445065..445139 /locus_tag="Dhaf_R0023" /note="tRNA-Met1" /db_xref="GeneID:7257369" tRNA 445065..445139 /locus_tag="Dhaf_R0023" /product="tRNA-Met" /db_xref="GeneID:7257369" gene 445302..445451 /gene="rpmG" /locus_tag="Dhaf_0403" /db_xref="GeneID:7257370" CDS 445302..445451 /gene="rpmG" /locus_tag="Dhaf_0403" /inference="protein motif:PFAM:PF00471" /note="in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L33" /protein_id="YP_002456906.1" /db_xref="GI:219666471" /db_xref="InterPro:IPR001705" /db_xref="GeneID:7257370" /translation="MRVGITLACTECKNRNYASIKNKKNNPDRLEVKKYCKFCKSHTA HKETK" gene 445561..445779 /gene="secE" /locus_tag="Dhaf_0404" /db_xref="GeneID:7257371" CDS 445561..445779 /gene="secE" /locus_tag="Dhaf_0404" /inference="protein motif:TFAM:TIGR00964" /note="forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecE" /protein_id="YP_002456907.1" /db_xref="GI:219666472" /db_xref="InterPro:IPR001901" /db_xref="InterPro:IPR005807" /db_xref="GeneID:7257371" /translation="MGAVKKQTNAPAKEKSTEYFKGVWSELKKVHWPDRKQLLTYTGV VLVAVAIVAVMLWVVDSGLSILMTKILG" gene 445854..446381 /locus_tag="Dhaf_0405" /db_xref="GeneID:7257372" CDS 445854..446381 /locus_tag="Dhaf_0405" /inference="protein motif:TFAM:TIGR00922" /note="TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: pth:PTH_0305 transcription antiterminator" /codon_start=1 /transl_table=11 /product="NusG antitermination factor" /protein_id="YP_002456908.1" /db_xref="GI:219666473" /db_xref="InterPro:IPR001062" /db_xref="InterPro:IPR005824" /db_xref="InterPro:IPR006645" /db_xref="InterPro:IPR015869" /db_xref="GeneID:7257372" /translation="MTKNWYVIHTYSGYENKVKTNLEKRVESMNMEDKIFRVLVPMED EIEIKNGKKKIAKRKVFPGYVLVEMDMTDDSWYVVRNTPGVTGFVGTGAKPIPLLDHE VQAILKQMGVEEVRTRVDYTVGQNVRVISGPFKDFIASVREILEDKGKLRVSVSMFGR ETPVELDFAQVEKVD" gene 446429..446857 /gene="rplK" /locus_tag="Dhaf_0406" /db_xref="GeneID:7257373" CDS 446429..446857 /gene="rplK" /locus_tag="Dhaf_0406" /inference="protein motif:PFAM:PF00298" /note="binds directly to 23S ribosomal RNA" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L11" /protein_id="YP_002456909.1" /db_xref="GI:219666474" /db_xref="InterPro:IPR000911" /db_xref="InterPro:IPR006519" /db_xref="GeneID:7257373" /translation="MAKKVVGLVKLAINAGKANPAPPVGPALGQHGVNIMAFCKEYNE RTKDQAGLIIPVEITVYEDRSFTFITKTPPASILLKKAANINSGSSEPNRKKVAQVSK TKVREIAETKMKDLNAASVEAAMSMVEGTARSMGITIVEG" gene 446907..447599 /gene="rplA" /locus_tag="Dhaf_0407" /db_xref="GeneID:7257374" CDS 446907..447599 /gene="rplA" /locus_tag="Dhaf_0407" /inference="protein motif:PFAM:PF00687" /note="in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L1" /protein_id="YP_002456910.1" /db_xref="GI:219666475" /db_xref="InterPro:IPR002143" /db_xref="InterPro:IPR005878" /db_xref="GeneID:7257374" /translation="MAKVGKNYQEAVKAFDRAALHEPMEALAVVKKIAKAKFDETVEV AFKLGIDTRHADQQIRGALVLPHGTGKTRSVLVFAKGDKAKEAEAAGADFVGAEDMIA KIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGK IEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTM GPGVRINPVKAN" gene 447828..448352 /gene="rplJ" /locus_tag="Dhaf_0408" /db_xref="GeneID:7257375" CDS 447828..448352 /gene="rplJ" /locus_tag="Dhaf_0408" /inference="protein motif:PFAM:PF00466" /note="binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10" /protein_id="YP_002456911.1" /db_xref="GI:219666476" /db_xref="InterPro:IPR001790" /db_xref="InterPro:IPR002363" /db_xref="GeneID:7257375" /translation="MPNIEEKAQVVAEIKERFQNSTGVVLADYRGLTVAQVTQLRAQL RQAGVEYHVLKNTMVRRAAHEVGIEGLDGYLEGPTAVAFSADPVAGAKVLADFAKTSK TFAIKAGVVEGKVVDEAGVKALAELPSREVLLAQVLRGMQAPLVGMANVLQGPIRKMG YALEEVRKLKEAQA" gene 448511..448885 /gene="rplL" /locus_tag="Dhaf_0409" /db_xref="GeneID:7257376" CDS 448511..448885 /gene="rplL" /locus_tag="Dhaf_0409" /inference="protein motif:TFAM:TIGR00855" /note="present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L7/L12" /protein_id="YP_002456912.1" /db_xref="GI:219666477" /db_xref="InterPro:IPR000206" /db_xref="InterPro:IPR013823" /db_xref="GeneID:7257376" /translation="MSKTAEILEAVKGLTVLELAELVKAFEEEFGVSAAAPVAVAAAP GAAAAPVAEEQTEFDVVLMNAGAGKINVIKVVREITGLGLKEAKELVDGAPKPVKEKV SKDDAEAIKAKLVEAGATVEVK" gene complement(448961..450091) /locus_tag="Dhaf_0410" /db_xref="GeneID:7257377" CDS complement(448961..450091) /locus_tag="Dhaf_0410" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional activator domain; KEGG: amt:Amet_3804 response regulator receiver/SARP domain-containing protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and SARP domain protein" /protein_id="YP_002456913.1" /db_xref="GI:219666478" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR005158" /db_xref="GeneID:7257377" /translation="MLRAIIVDNEEPATQILQMLLEKTGQIRVVGTFLRAADALSSLR LTKPDVAFLDIEIPDTSGLELANHILAMDSDVEIIFVTAYDHYALHAFRVNALDYLLK PLLPEDVERAVRRLIKRKGLAKDSAPESPLGANIHYFGKFSVYGPASKKPVKWRTSKA EELFAYLVQNLEKEVPKWRICEALWPEYHSEKVDIQLHTTVYKLKKVLTAANIPFDLS FSNGCYWLSLPQAAIDKVEFDAHIASSVPVNQSTIARCEHALSLYTGDYLEENGYLWS LALKAEYGQKFYKLASSVVNFYMTQGDWVRAEKILRSILERCPLDETVHEMLLTCYFT QKDRTAFITHYHTVRKLFQAELGLEPGKSIQTLYHSLLKRMD" gene complement(450151..453207) /locus_tag="Dhaf_0411" /db_xref="GeneID:7257378" CDS complement(450151..453207) /locus_tag="Dhaf_0411" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase internal region; KEGG: cbe:Cbei_2171 signal transduction histidine kinase, LytS" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_002456914.1" /db_xref="GI:219666479" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR010559" /db_xref="GeneID:7257378" /translation="MNNTNMQKSFFVIMLLIMAASLAVPLFRLSLSDIPKAVKGTLDL RDYNGVRDKTVKLSGEWEFYFGQLLTPEDFKNQEPSGKTIQNVPASWGSYQIEGEHLP PQGSATYRLRILLPAEGGNFGIKITCISASARIFADDQLILECGSPGNSPETTVHKYY ADTGYFQTDDGEVEILVQAADFSYVNSGILYEIHFGDQKSIAALRMYDSFLDISLISG MSFLALYFFGLGLQRKKSAEILFFALYCLVSSLQASVRSEALLNYALPALSYNTSLKI LIISYTLCLYALIKFLYHAQEGGSSRRANLIIDGITLFFILLDWFTDFYLWGYIYTVA LVGQIYVLFLLIALLAKNTKGGSEGRYYLFSAVVSSLIHLLTILANFILLWESNLFLP VFQPIFVLSLALYMSEKYENSFKTIEKLSDRLVVLDKLKDDFLAKTSHELKTPLNGII NISQSLLDGAGGSLSRAQAEDIRLITSIGKRLSTLVYDILDYSKLKVMDIQLHIVCLD VHQVAESTVDIFRYLIKGRPITLENKIPPNQHLIWADENRLKQIFSNLLDNSLKYTEL GSISLSCRQDGGFLWIQVSDTGIGIPADKLKDIFAPYEQLGEQSANQRGIGLGLTITQ QLIELHGGQIVARSEPGQGTSFTFSIPLAKDNKPQRSLPGDYVGYDGSESLATEALPQ TVHVGGEFSILVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCIL DVMMPGISGYEVCRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVR ELKCRVSTLVQLKNSMDLLLKKETAFLQAQIRPHFLFNALNTIYSFCYTNPGKAGELL AELGVFLRSSFDFSSTASLVTVEKELRLVKAYVAIEEARFGSQLEVEYAVEPSVLNFS ILPLMIQPIVENSIRHGLLKRSQGGKVSLSLTHSEDCIQVEVIDNGVGIPASVLKDLI HAKSETRGVGLTNISRRLLRFYGTTLTIFSVEDHGTTVSFRIPAKT" sig_peptide complement(450151..450222) /locus_tag="Dhaf_0411" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.916 at residue 24" gene 453412..455415 /locus_tag="Dhaf_0412" /db_xref="GeneID:7257379" CDS 453412..455415 /locus_tag="Dhaf_0412" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ckl:CKL_0412 predicted methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002456915.1" /db_xref="GI:219666480" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7257379" /translation="MKIHSLSGKISVLMAGCVAVFTIAVYFIISLTVESVINQNIEDE VRAKALVLSEELQNRQQRALNATELLTGSPGLLEAIRTGNRQGALAIGQQALKTLELD FLVVTDQEGKVFVRTHEPEKYGDSIIDQVNIQKALQGEASVGIEEGTSINYSIRAGAP LQDEEGRIYGAVSLGYALSENDYVDAQKKIFNCDVTVFLGDERIATTIMSKNGTRLVG TKMEDQRIIDTVLKQGKAYYGSTTINGSKYFVGYTPLADVTGKVSGMLFLGQSYNMAA MLSQKLIMNQAVFMAVLGVFMGFCVVFMFRIMILRKIKAITAMLKDIAEGEGDLTKRV AVSAQDEIGEMSDYFNLFIENIHEVVKGIIAETNKVNTAILASHRNIGVLTGELENAA ATVQELSAGMEETASSTEEITATSTEIASAVEVVAIKAQEGALSAHEISSKAVSLKDN AFELQAEADQTRSAIKQTMDAALAKTTEVAKIKSLSEVILQIAVQTNLLALNAAIESA RAGEAGKGFSVVSEEIRKLAENSQNTVKEIQDTLGVIFEVVENLADTSRQMLVYIDTK VVENYKESVLVGENYDHDAQTIDGWAGELSATSQELLASIKTVADGIAEIARATESGS ERTAHVAAQVAMLKDKANEIKTETDSVKDSADNLQALVRKFKI" sig_peptide 453412..453519 /locus_tag="Dhaf_0412" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.741) with cleavage site probability 0.377 at residue 36" gene 455487..456680 /locus_tag="Dhaf_0413" /db_xref="GeneID:7257380" CDS 455487..456680 /locus_tag="Dhaf_0413" /inference="protein motif:PFAM:PF00563" /note="PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: amt:Amet_2969 diguanylate phosphodiesterase" /codon_start=1 /transl_table=11 /product="diguanylate phosphodiesterase" /protein_id="YP_002456916.1" /db_xref="GI:219666481" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013976" /db_xref="GeneID:7257380" /translation="MDAFLARQPIFDRGLKIYGYELLYRQSRDNFFSGIDDDQATAEL IYNTFLVMGLQDLTDGSNAFINFSKKLIDSDIPFLLPKENIVVEILERDQVTPATVEA CKKMKAMGYKLALDDFVADQNNLPLIEMADIIKIEFPAVSKNEQSSLMKRCGKNVKFL AEKIETREEFRQAAAMGYDLFQGYFFSKPAIIQSKEVVTLNVNLFSVLEELNSAEPSY GVMANIIKSDLGLSYKLLKLANSVYMGSKNKIQSIPHALSFIGIKEMHQWIALMLLKD MQNVENAELIKQSLIRGKFMELLASELYPQSESSGFFFTGIFSAIDVLLNSPMEQVLK GLPLSIQVKQALLGAENEQRQLLNFVTAWEKGHWEKAADRYTMSRKFMELYFEALKWT QKLNY" gene 457178..460525 /gene="rpoB" /locus_tag="Dhaf_0414" /db_xref="GeneID:7257381" CDS 457178..460525 /gene="rpoB" /locus_tag="Dhaf_0414" /inference="protein motif:TFAM:TIGR02013" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta" /protein_id="YP_002456917.1" /db_xref="GI:219666482" /db_xref="InterPro:IPR007120" /db_xref="InterPro:IPR007121" /db_xref="InterPro:IPR007641" /db_xref="InterPro:IPR007642" /db_xref="InterPro:IPR007644" /db_xref="InterPro:IPR007645" /db_xref="InterPro:IPR010243" /db_xref="GeneID:7257381" /translation="MFYPVKVGTRERWSYSRIREVLDMPNLIEIQQNSYQWFLDEGLR EMFRDISPIQDFTGNLVLEFIDYSLGEPKYEVEECKERDVTYAAPLRVKVRLINKETG EVKEQEVFMGDFPLMTTKGTFIINGAERVIVSQLVRSPGVYYSESIDPSGKKVFGATV IPNRGAWLEFETDVNDNIFVRVDRTRKLPATVLIRALGYATNGQIAELFDDNEHIRIT LERDNTESAEEALVEIYKRLRPGEPPTVDSARSLLEALFFDPKRYDLAKVGRYKLNKK LKLSVPTDVHHLTKEDIVASLRQMLTLMSGEGHKDDIDHLGNRRLRSVGELLQNQFRI GLSRMERVVRERMTIQDVDVITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAEL THKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYGRIN PYGFIEAPYRKVNNGQVTDQIDYLTADEEEKFVVAQANAPLTDDGHFIEEKIDGRHGP DFVLVAPERIDYMDVSPKQMVSIATALIPFLEHDDANRALMGANMQRQAVPLLRTDAP YVGTGMEYKAAKDSGVCVLASKDGTVERATAEDIIIRHDDGTLEKHKLLKYLRSNQGT CINQRPIVMKNERVEAGQIIADGPSTDHGELALGRNVLIAFMTWEGYNYEDAILISEK LVKEDYYTSIHIEEYEADARDTKLGPEEITRDIPNVGEDVLKDLDERGIIRIGAEVST GDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFTRE NGDELAPGVNELVRVYIAQKRKISVGDKMAGRHGNKGVISRIMKQEDMPFLPDGTPVE IVLNPLGVPSRMNIGQVMETHLGWAAKALGLRLATPVFDGAQEEDVFATLRKAGLPET GKTVLYDGRTGDPFDNKITVGYMYFLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQF GGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESF KVLIKELQSLGLDVRVLSENDEEIEIREIDEDVTETAKELGIDLHEDLPAPVIHEAGE GEDDEYFEEDEEAVDDEPMTFDDDDME" gene 460550..464017 /locus_tag="Dhaf_0415" /db_xref="GeneID:7257382" CDS 460550..464017 /locus_tag="Dhaf_0415" /inference="protein motif:TFAM:TIGR02386" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta'" /protein_id="YP_002456918.1" /db_xref="GI:219666483" /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012754" /db_xref="GeneID:7257382" /translation="MLDVNNFDRMRIGLASPTMIREWSHGEVRKPETINYRTLKPERE GLFCEKIFGPTRDWECHCGKYKRVRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVS HIWYFKGIPSRMGLLLDMSPRSLEKVLYFVSYIVTDAGDTSLMKKQLLTETEYREYRD KYGSRFKASMGAEAIKMLLEEMDLDKLNDELRVELKEVSGQRKIRAIRRLEVVEAFKE SGNRPEWMIMDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA PDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK RVDYSGRSVIVVGPNLRLHQCGLPKEMALELFKPFVMKKLVKEGHAHNIKSAKRMVER VRSEVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPVLVEGRALQIHPLVCTAYNADF DGDQMAVHVPLSAEAQAEARLLMLSAHNILNPKDGRPVASPTQDMVLGSYYLTMERPG ALGEGKIFKNRDEAVLAYDTKQANLQAMIKVRQPNGELLETTIGRLIFNSVIPPEVGY INEVAGKKALNNIVAKCYRLGGYKATAQLLDGIKSLGFKYSTRAGMTVGLADITVPEE KRQILADADGMVNKTEQQFRRGLITDEERYEKVIEIWTKATDTVTKALMHSLDKFNPV YMMATSGARGNIQQLRQLAGMRGLMADPSGRTIELPIKANFREGLTVLEYFISSHGAR KGLADTALRTADSGYLTRRLVDVSQDVIVRDEDCGTTQGIMVDDVKDGPEVIEKLEER LVGRFLLEDLKHPETGEILATADNEITEEQAHDIAAVYDNVTIRSVLTCKTRYGVCRK CYGRNLATGHHVEMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEEL FEARKPKGQAIISENDGVVAIREVKGRREVDVISDTEERMTYTIPYGSRLKVREGHRI EAGDELTEGSINPHDMLKVKGIRGVQVYLLGEVQRVYRLQGVDINDKHIEVMVRQMLR KVKVEEAGDTTLLPGGLIDVFDFEEENTKVIAAGGEPAVARPVLLGITKASLATDSFL SAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMSRYRNVKVINLDEEQ VENLDSVNP" gene 464111..464362 /locus_tag="Dhaf_0416" /db_xref="GeneID:7257383" CDS 464111..464362 /locus_tag="Dhaf_0416" /inference="similar to AA sequence:KEGG:STH3081" /note="KEGG: sth:STH3081 ribosomal protein L7AE family protein" /codon_start=1 /transl_table=11 /product="ribosomal protein L7AE family protein" /protein_id="YP_002456919.1" /db_xref="GI:219666484" /db_xref="GeneID:7257383" /translation="MLDEALKKSKNRTVGVKQTLRALEKESLICVYVAKDAESHVLRP ILEQCRNKRIQVQEVQTMLELGKACGIEVGAAVAALLSE" gene 464462..464884 /gene="rpsL" /locus_tag="Dhaf_0417" /db_xref="GeneID:7257384" CDS 464462..464884 /gene="rpsL" /locus_tag="Dhaf_0417" /inference="protein motif:TFAM:TIGR00981" /note="interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12" /protein_id="YP_002456920.1" /db_xref="GI:219666485" /db_xref="InterPro:IPR005679" /db_xref="InterPro:IPR006032" /db_xref="GeneID:7257384" /translation="MPTINQLIRNGRSKIAKKSTAPAMQWGYNSLQRKQFASGGSPQK RGVCTRVYTTTPKKPNSALRKVARVRLTNTIEVSSYIPGIGHNLQEHSVVLVRGGRVK DLPGVRYHIVRGALDTQGVQKRMQARSKYGAKRPKKGK" gene 464936..465406 /locus_tag="Dhaf_0418" /db_xref="GeneID:7257385" CDS 464936..465406 /locus_tag="Dhaf_0418" /inference="protein motif:PFAM:PF00177" /note="binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7" /protein_id="YP_002456921.1" /db_xref="GI:219666486" /db_xref="InterPro:IPR000235" /db_xref="InterPro:IPR005717" /db_xref="GeneID:7257385" /translation="MPRKGYIAKREILPDPIYKNRVLTKFINQIMLDGKKGTAESICY NAFELIQEKTGKDPIEVFETALKNVMPVLEVKARRVGGANYQVPIEVRTDRRQTLGLR WLVGYARKRSEKTMEERIAGELMDAANNTGGSIKKKEDTHKMAEANKAFAHYRW" gene 465475..467553 /locus_tag="Dhaf_0419" /db_xref="GeneID:7257386" CDS 465475..467553 /locus_tag="Dhaf_0419" /inference="protein motif:TFAM:TIGR00484" /note="EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene" /codon_start=1 /transl_table=11 /product="elongation factor G" /protein_id="YP_002456922.1" /db_xref="GI:219666487" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004540" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="GeneID:7257386" /translation="MARQFPLEKTRNIGIMAHIDAGKTTTTERILFYTGRVHKIGEVH DGAATMDWMVQEQERGITITSAATTAQWKGHRINIIDTPGHVDFTVEVERSLRVLDGA VAVFCSVGGVEPQSETVWRQADKYGVPRIAYINKMDRMGADFFRGVSMIADRLGANPV PIQIPIGAEDQFKGIIDLVTMKAMIYTDDLGTTSDVADIPGDLVDQANEYREKLLEAV ADTDEELMMKYLEGEELTEEEIRNGIRKGTIGLKFIPVVCGSSFKNKGVQPLLDAVVE YMPAPTDVPNIKGVHPETGEADERHSSDKDPFSALAFKIMADPYVGKLAFFRVYSGVL GSGSYVYNSTKGKRERIGRILQMHANHREEIPEVYAGDIAAAVGLKDTTTGDTLCDDK APIILESMQFPDPVINVAIEPKTKQDQEKMGTALARLAEEDPTFKMHTDQDSGQTIIE GMGELHLEIIVDRLQREFKVECNVGRPQVAYKETIRRAVKSEGKFVRQSGGRGQYGHC WIEIEPLEQGSGFEFVNKIVGGVIPREYIAPIGQGIEEAMQNGIQAGYPVMDIRATVY DGSYHDVDSSEMAFKIAGSMAFKAGAAKADPAIIEPVMKVEVTVPEEYMGEVIGDMNS RRGRIEGMEATGTAQIVRGFVPLSEMFGYATDLRSKTQGRGVYVMMFDHYEEVPKNIA EGIVAKRAGA" gene 467678..468880 /locus_tag="Dhaf_0420" /db_xref="GeneID:7257387" CDS 467678..468880 /locus_tag="Dhaf_0420" /inference="protein motif:TFAM:TIGR00485" /note="EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu" /codon_start=1 /transl_table=11 /product="elongation factor Tu" /protein_id="YP_002456923.1" /db_xref="GI:219666488" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004541" /db_xref="InterPro:IPR005225" /db_xref="GeneID:7257387" /translation="MAKQKFERTKPHVNVGTIGHVDHGKTTSTAAITLVLSKAGGAVA QAFDQIDKAPEERERGITISTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVSAADGPMPQTREHILLARQVGVPYIVVWLNKADMVDDPELMELVEMEIRELLSE YEFPGDDIPIIPGSGLKALQCGCGSRDCEWCGKIWNLMDAVDSYIPTPERATDKPFLM PVEDVFTITGRGTVATGRVERGVIKVGDEIEIVGLTEAPRKTVCTGVEMFRKLLDQAQ AGDNIGALLRGVDRKDIERGQVLAKTGSIKPHTKFTGEVFVLSKEEGGRHTPFFNNYR PQFYFRTTDVTGVVTLPEGTEMVMPGDRVTITCEIISPIAMEEGLRFAIREGGRTVGA GVVVSIIE" gene 469108..469416 /gene="rpsJ" /locus_tag="Dhaf_0421" /db_xref="GeneID:7257388" CDS 469108..469416 /gene="rpsJ" /locus_tag="Dhaf_0421" /inference="protein motif:PFAM:PF00338" /note="NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10" /protein_id="YP_002456924.1" /db_xref="GI:219666489" /db_xref="InterPro:IPR001848" /db_xref="InterPro:IPR005731" /db_xref="GeneID:7257388" /translation="MSSQKIRIRLKAFDHKTLDQSAEKIVETAKRTGARVSGPIPLPT EKSIYTILRSPHVNKDSREQFEMRTHKRLIDILEPTSKTVDALMRLDLPAGVDIEIKL" gene 469671..470300 /gene="rplC" /locus_tag="Dhaf_0422" /db_xref="GeneID:7257389" CDS 469671..470300 /gene="rplC" /locus_tag="Dhaf_0422" /inference="protein motif:PFAM:PF00297" /note="binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="YP_002456925.1" /db_xref="GI:219666490" /db_xref="InterPro:IPR000597" /db_xref="GeneID:7257389" /translation="MSKGILGKKVGMTQVFTEEGHLIPVTVVEAGPCYVIQKKTKATD GYNAIQVGFGALRERLANKPQKGHVAKASVKPMRYIREFRVDDVDAYEIGQEITAEVF AAGDAVDVVGISKGKGFAGMIKRHGAGRGPMKHGSKYHRRTGSLGAKGPARVFKGRNL PGRMGGERVTVQNLKVVRVDADKNMILVKGAVPGAKKSLLILKPSVKAK" gene 470325..470948 /gene="rplD" /locus_tag="Dhaf_0423" /db_xref="GeneID:7257390" CDS 470325..470948 /gene="rplD" /locus_tag="Dhaf_0423" /inference="protein motif:PFAM:PF00573" /note="L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4" /protein_id="YP_002456926.1" /db_xref="GI:219666491" /db_xref="InterPro:IPR002136" /db_xref="GeneID:7257390" /translation="MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQ RRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLP KKVRRLALRSALSSKVNEQKLIVLEDLSLNEAKTREMVKVLQALNVGKKALIVTDEFM ETIDRSARNIAGIKTTAVEGMNIYDLLNSDVIVMTKAAVTKTEEVLA" gene 470948..471235 /gene="rplW" /locus_tag="Dhaf_0424" /db_xref="GeneID:7257391" CDS 470948..471235 /gene="rplW" /locus_tag="Dhaf_0424" /inference="protein motif:PFAM:PF00276" /note="binds third domain of 23S rRNA and protein L29; part of exit tunnel" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L23" /protein_id="YP_002456927.1" /db_xref="GI:219666492" /db_xref="InterPro:IPR001014" /db_xref="InterPro:IPR013025" /db_xref="GeneID:7257391" /translation="MRDARDVLKRPVISEKSVGLIEENKYSFWVDTAANKIEIKNAVE KMFKVKVVDVRTINVDGKKKRVGKHVGRTADRKKAIVTLKAGDRIEGFAGL" gene 471260..472090 /gene="rplB" /locus_tag="Dhaf_0425" /db_xref="GeneID:7257392" CDS 471260..472090 /gene="rplB" /locus_tag="Dhaf_0425" /inference="protein motif:PFAM:PF00181" /note="one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2" /protein_id="YP_002456928.1" /db_xref="GI:219666493" /db_xref="InterPro:IPR002171" /db_xref="InterPro:IPR005880" /db_xref="GeneID:7257392" /translation="MPVKGFKPYSPGRRQMTVSTFEEITKTTPERSLLAPLKSKAGRN NQGKLTVRHQGGGHKRKYRLIDFKRNKDSVPAKVASIEYDPNRSANIALLHYLDGHKA YILAPNGLQVGQMVVSGPDADIKVGNALPIKNIPVGTLLHNIEMKPGKGAQLVRSAGG SAQLMAKEGKYATLRLPSGEMRMVHIDCRATIGQVGNLEHENINIGKAGRSRWLGIRP TVRGAVMNPNDHPHGGGEGRNPIGRNPVTPWGKPALGAKTRKKKNPSNRFIVKRRGKK" gene 472110..472391 /gene="rpsS" /locus_tag="Dhaf_0426" /db_xref="GeneID:7257393" CDS 472110..472391 /gene="rpsS" /locus_tag="Dhaf_0426" /inference="protein motif:TFAM:TIGR01050" /note="protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19" /protein_id="YP_002456929.1" /db_xref="GI:219666494" /db_xref="InterPro:IPR002222" /db_xref="InterPro:IPR005732" /db_xref="GeneID:7257393" /translation="MSRSLKKGPYVEGRLLERVEKMNAANEKRVLKTWSRSSTIFPQM VGHTIAVHEGRKHIPIYITEDMVGHKLGEFAPTRTYKGHAGSEKSSGLR" gene 472410..472754 /gene="rplV" /locus_tag="Dhaf_0427" /db_xref="GeneID:7257394" CDS 472410..472754 /gene="rplV" /locus_tag="Dhaf_0427" /inference="protein motif:TFAM:TIGR01044" /note="binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22" /protein_id="YP_002456930.1" /db_xref="GI:219666495" /db_xref="InterPro:IPR001063" /db_xref="InterPro:IPR005727" /db_xref="GeneID:7257394" /translation="MQQAKAIARYVRISPRKVRQVVDLIRGKNVSDALAILQFTPKGA TEPVTKVLNSAVANAEHNYDMDTDALIVKEIYVDEGPTLKRIKPRAMGRADQIRKRTS HITVVVVEKKEG" gene 472758..473417 /gene="rpsC" /locus_tag="Dhaf_0428" /db_xref="GeneID:7257395" CDS 472758..473417 /gene="rpsC" /locus_tag="Dhaf_0428" /inference="protein motif:TFAM:TIGR01009" /note="forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3" /protein_id="YP_002456931.1" /db_xref="GI:219666496" /db_xref="InterPro:IPR001351" /db_xref="InterPro:IPR004044" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR005704" /db_xref="InterPro:IPR008282" /db_xref="GeneID:7257395" /translation="MGQKVNPKGLRVGIIRDWEGRWFADKNYLELLHEDLKVRKFVKT KLQQAGVPKVEIERAANRVKVSIYAAKPGIVIGRGGTEVENLRKQLEAMTGKQVAVNI VEVKKPELDAQLVAESVAQQLEKRVSFRRAMKQTVQRTMRQGGQGIKISCSGRLGGAE IARTEWYSEGKVPLHTLRADIDYGFAEANTTYGKIGVKVWIYKGEVLPAKKVAQVEGG K" gene 473418..473855 /gene="rplP" /locus_tag="Dhaf_0429" /db_xref="GeneID:7257396" CDS 473418..473855 /gene="rplP" /locus_tag="Dhaf_0429" /inference="protein motif:PFAM:PF00252" /note="located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="YP_002456932.1" /db_xref="GI:219666497" /db_xref="InterPro:IPR000114" /db_xref="GeneID:7257396" /translation="MLVPTRVKHRKQHRGRMHGKATRGNVITFGEYGLVAMEPAWITN RQIEAARIAMTRYIKRGGKVWIKIFPDKPITAKPAETRMGSGKGSPEYWVAVVKPGRV MFELAGVPEEIAKEALRLAMHKLPVKCKIVRREELEGGDANEN" gene 473845..474048 /locus_tag="Dhaf_0430" /db_xref="GeneID:7257397" CDS 473845..474048 /locus_tag="Dhaf_0430" /inference="protein motif:PFAM:PF00831" /note="one of the stabilizing components for the large ribosomal subunit" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="YP_002456933.1" /db_xref="GI:219666498" /db_xref="InterPro:IPR001854" /db_xref="GeneID:7257397" /translation="MKTKNFRDMTDEELLKEIDGFKTELFNLRFQLATGQLDNPARIR EVRKGIARGKTILRERELKINRA" gene 474072..474332 /gene="rpsQ" /locus_tag="Dhaf_0431" /db_xref="GeneID:7257398" CDS 474072..474332 /gene="rpsQ" /locus_tag="Dhaf_0431" /inference="protein motif:PFAM:PF00366" /note="primary binding protein; helps mediate assembly; involved in translation fidelity" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="YP_002456934.1" /db_xref="GI:219666499" /db_xref="InterPro:IPR000266" /db_xref="GeneID:7257398" /translation="MERTQRKVRVGKVVSDKMEKTIVVAVEMKVRHPLYHRTITQTKK FKAHDENNEAKIGDSVVIMETRPISKDKRWRLVEITERAVVL" gene 474368..474736 /gene="rplN" /locus_tag="Dhaf_0432" /db_xref="GeneID:7257399" CDS 474368..474736 /gene="rplN" /locus_tag="Dhaf_0432" /inference="protein motif:TFAM:TIGR01067" /note="binds to the 23S rRNA between the centers for peptidyl transferase and GTPase" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L14" /protein_id="YP_002456935.1" /db_xref="GI:219666500" /db_xref="InterPro:IPR000218" /db_xref="InterPro:IPR005745" /db_xref="GeneID:7257399" /translation="MIQVQTRLRVGDNSGAKELMCIKVLGGSMRRYASIGDIIVASVK EATPGGVVKKGDVVKAVVVRTKKEIKRKDGTYIRFSENAAVVIKDDRSPRGTRIFGPV ARELRDRDFMKIISLAPEVI" gene 474764..475102 /gene="rplX" /locus_tag="Dhaf_0433" /db_xref="GeneID:7257400" CDS 474764..475102 /gene="rplX" /locus_tag="Dhaf_0433" /inference="protein motif:TFAM:TIGR01079" /note="assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L24" /protein_id="YP_002456936.1" /db_xref="GI:219666501" /db_xref="InterPro:IPR003256" /db_xref="InterPro:IPR005824" /db_xref="InterPro:IPR005825" /db_xref="GeneID:7257400" /translation="MAAVKQKIHVKKGDMVMVITGKDAGKKGKVLEVFPKKGRVVIEK VNIVKRHTKPSQSMPQGGIFEKEAPVASSNVMLFCTECNKVTRVSMKVTEAGKVRVCK KCGVNLPDKK" gene 475124..475663 /gene="rplE" /locus_tag="Dhaf_0434" /db_xref="GeneID:7257401" CDS 475124..475663 /gene="rplE" /locus_tag="Dhaf_0434" /inference="protein motif:PFAM:PF00281" /note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5" /protein_id="YP_002456937.1" /db_xref="GI:219666502" /db_xref="InterPro:IPR002132" /db_xref="GeneID:7257401" /translation="MARLKDKFSSEIAPALQQKFNYKNVMQIPKLEKVVINVGVGEAI QNSKAIDAAVGDLSKITGQKPVVTRAKKSIAAFKLRTGMPIGTKVTLRGDRMYEFVDR LMNVALPRVRDFHGVSDKAFDGRGNYTLGIKEQLIFPEIEYDKIDKVRGMDIIFVTTA KTDEEARELLGMLGMPFRK" gene 475684..475869 /gene="rpsN" /locus_tag="Dhaf_0435" /db_xref="GeneID:7257402" CDS 475684..475869 /gene="rpsN" /locus_tag="Dhaf_0435" /inference="protein motif:PFAM:PF00253" /note="located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="YP_002456938.1" /db_xref="GI:219666503" /db_xref="InterPro:IPR001209" /db_xref="GeneID:7257402" /translation="MAKKSMIVRNARQPKYAVRHHNRCKLCGRPHAYIRKFGICRICF RELAYKGELPGVKKASW" gene 475895..476293 /gene="rpsH" /locus_tag="Dhaf_0436" /db_xref="GeneID:7257403" CDS 475895..476293 /gene="rpsH" /locus_tag="Dhaf_0436" /inference="protein motif:PFAM:PF00410" /note="binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S8" /protein_id="YP_002456939.1" /db_xref="GI:219666504" /db_xref="InterPro:IPR000630" /db_xref="GeneID:7257403" /translation="MAMSDPIADFLTRIRNAGMVYHDKVEVPASNVKKAIAEILKEEG FIKDVEYISDNKQGVIRCYLKYGQNRERVITGLKRISRPGLRVYAKKDEVPKVLGGLG VAILSTSKGLMTDKRARQEGLGGEVLCYIW" gene 476318..476872 /gene="rplF" /locus_tag="Dhaf_0437" /db_xref="GeneID:7257404" CDS 476318..476872 /gene="rplF" /locus_tag="Dhaf_0437" /inference="protein motif:PFAM:PF00347" /note="ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L6" /protein_id="YP_002456940.1" /db_xref="GI:219666505" /db_xref="InterPro:IPR000702" /db_xref="InterPro:IPR002358" /db_xref="GeneID:7257404" /translation="MSRIGKRPISIPGGVDVNIEGNVVTVKGPKGTLTKEMHSLINIA VEEQQIVVTRPDDQPLSRSLHGLTRTLVANMVEGVTKGFSKSLDMVGVGYRAAKQGNK LVLSVGKSHPVELIPFEGIEVEVPAQNKIIVKGMDKELVGDFAAEIRKERPPEPYKGK GIKYENEVVRRKAGKTGAKKGGKK" gene 476925..477293 /gene="rplR" /locus_tag="Dhaf_0438" /db_xref="GeneID:7257405" CDS 476925..477293 /gene="rplR" /locus_tag="Dhaf_0438" /inference="protein motif:TFAM:TIGR00060" /note="binds 5S rRNA along with protein L5 and L25" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L18" /protein_id="YP_002456941.1" /db_xref="GI:219666506" /db_xref="InterPro:IPR004389" /db_xref="InterPro:IPR005484" /db_xref="GeneID:7257405" /translation="MITQIDRKAIRMKKHKRVRKSVFGTAERPRLAVFRSLNHIYAQV INDELGVTLATASSLDAEFKAAELAGGNVEGAKKVGELVAKRAQEKGVSKVVFDRGGN IYHGRIAAVAEAAREAGLEF" gene 477318..477818 /gene="rpsE" /locus_tag="Dhaf_0439" /db_xref="GeneID:7257406" CDS 477318..477818 /gene="rpsE" /locus_tag="Dhaf_0439" /inference="protein motif:TFAM:TIGR01021" /note="located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S5" /protein_id="YP_002456942.1" /db_xref="GI:219666507" /db_xref="InterPro:IPR005324" /db_xref="InterPro:IPR005712" /db_xref="InterPro:IPR013810" /db_xref="GeneID:7257406" /translation="MAKIDASKLELTEKVVHIARVAKVVKGGRRFSFSALVVVGDGHG NVGAGLGKAGEVPEAIRKGMEDAKKNMVSVPLIGTTIPHAILGNYGAGSVLLKPAAKG TGVIAGGAVRAVLEVAGVSDILTKSLGSANPHNMVNATMAALKSLKRAEDVARLRGKT VEEILG" gene 477830..478012 /gene="rpmD" /locus_tag="Dhaf_0440" /db_xref="GeneID:7257407" CDS 477830..478012 /gene="rpmD" /locus_tag="Dhaf_0440" /inference="protein motif:PFAM:PF00327" /note="L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L30" /protein_id="YP_002456943.1" /db_xref="GI:219666508" /db_xref="InterPro:IPR000517" /db_xref="InterPro:IPR005996" /db_xref="GeneID:7257407" /translation="MKIKVTLVKSPIGYSENQRKVLKSLGLGKMGSSVVHDDTPNIQG MIRKCAHLVAVENVAE" gene 478031..478474 /gene="rplO" /locus_tag="Dhaf_0441" /db_xref="GeneID:7257408" CDS 478031..478474 /gene="rplO" /locus_tag="Dhaf_0441" /inference="protein motif:PFAM:PF00256" /note="late assembly protein" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L15" /protein_id="YP_002456944.1" /db_xref="GI:219666509" /db_xref="InterPro:IPR001196" /db_xref="InterPro:IPR005749" /db_xref="GeneID:7257408" /translation="MKLHELKPAQGSTKAPKRLGRGIGSGTGKTSGKGHKGQKARAGG GVRPGFEGGQQPLSRRMPKRGFTNIFKKEYVVLNVRDLEERFENGAVVGYESLFEVGL IKTIKDGVKILGTGELTKALTVQVDKVSQTAAEKIVAAGGKVEVE" gene 478476..479765 /gene="secY" /locus_tag="Dhaf_0442" /db_xref="GeneID:7257409" CDS 478476..479765 /gene="secY" /locus_tag="Dhaf_0442" /inference="protein motif:TFAM:TIGR00967" /note="forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecY" /protein_id="YP_002456945.1" /db_xref="GI:219666510" /db_xref="InterPro:IPR002208" /db_xref="GeneID:7257409" /translation="MIVDSLKNAWKLPEIRTKIGFTLLMFLIFRIGAHIPIPFINHDI LSNILGSGTLYDFLDTFSGGSFRRFSVFALSITPYITASIILQLLTIVIPSLERLAKE GEFGRKKITQYTRYGTVILGFIQGFGMTFGLRGALIIPKPGMEWAIYLLVALILTAGT AFLMWLGERITENGIGNGISLIIFAGIVAGVPDAIKRIAGLLSVGEINVFSVFGLIVI GLGIIAGVVFIQEGQRRIQVQYAKRVVGRRVYGGQSSHIPMKVNQAGVIPIIFAISLL AFPSTIATWMDPTSAYVRFVNTWFVMNGSLTSIPYLIVYAVLIIFFTYFYTAVSFNPV DVADNLKKYGGFIPGLRPGRATSDYLSKILSRLTLAGGTFLAMIAVLPSLVIGLTGIP NITLGGTSLLIVVSVALETMKQLESMLMQRHYQGFMK" gene 479777..480430 /gene="adk" /locus_tag="Dhaf_0443" /db_xref="GeneID:7257410" CDS 479777..480430 /gene="adk" /locus_tag="Dhaf_0443" /EC_number="2.7.4.3" /inference="protein motif:PRIAM:2.7.4.3" /note="essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="YP_002456946.1" /db_xref="GI:219666511" /db_xref="InterPro:IPR000850" /db_xref="InterPro:IPR006259" /db_xref="InterPro:IPR007862" /db_xref="GeneID:7257410" /translation="MRAILMGPPGAGKGTQAADLITRYQIPHISTGDMFRAAIKAGTA LGMKAKEYMDAGSLVPDEVTIGIVAERLAEPDCSKGFLLDGFPRTVAQADALDKILTQ LKMNLDGVINIEVPEAKLLERLTGRRICRQCGGTYHMVFNPPAAEAVCDKCGGELYQR SDDTLETAKNRLQVYNDQTQPLIDYYREKGLLKEINGDQDIAQVLQDIVDAMEHGHD" gene 480423..481169 /locus_tag="Dhaf_0444" /db_xref="GeneID:7257411" CDS 480423..481169 /locus_tag="Dhaf_0444" /inference="protein motif:TFAM:TIGR00500" /note="TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: drm:Dred_0236 methionine aminopeptidase, type I" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase, type I" /protein_id="YP_002456947.1" /db_xref="GI:219666512" /db_xref="InterPro:IPR000994" /db_xref="InterPro:IPR001714" /db_xref="InterPro:IPR002467" /db_xref="GeneID:7257411" /translation="MIELKNPSQIAVMRKAGKIVADTLQLMRENVRPGITTGELDGIA EEYIRKCGAVPAFKGYNGFPSSLCTSVNEQVVHGFPGLRTLKSGDIISIDCGAVFDGY VGDAAITLPVGEISEELQLLLRVTEESLMMGIPQAIKGNRLQDISHAVQTHVEAHGLS VVRDYVGHGIGRAMHEDPQIPNYGKPGRGPRLEIGMVLAIEPMVNLGTYEVKVLSDHW TVVTKDGKASAHFEHTVAITENGPEILTRS" gene 481204..481422 /gene="infA" /locus_tag="Dhaf_0445" /db_xref="GeneID:7257412" CDS 481204..481422 /gene="infA" /locus_tag="Dhaf_0445" /inference="protein motif:TFAM:TIGR00008" /note="stimulates the activities of the other two initiation factors, IF-2 and IF-3" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="YP_002456948.1" /db_xref="GI:219666513" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004368" /db_xref="InterPro:IPR006196" /db_xref="GeneID:7257412" /translation="MSKEDVIEVEGKVLEPLPNAMFLVELSNGHKVLAHVSGKIRMNF IRILPGDRVTVELSPYDLSRGRIVYRFK" gene 481446..481559 /gene="rpmJ" /locus_tag="Dhaf_0446" /db_xref="GeneID:7257413" CDS 481446..481559 /gene="rpmJ" /locus_tag="Dhaf_0446" /inference="protein motif:PFAM:PF00444" /note="smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L36" /protein_id="YP_002456949.1" /db_xref="GI:219666514" /db_xref="InterPro:IPR000473" /db_xref="GeneID:7257413" /translation="MKVRPSVKKICEKCKVIKRHGKVMVICENPKHKQRQG" gene 481736..482107 /gene="rpsM" /locus_tag="Dhaf_0447" /db_xref="GeneID:7257414" CDS 481736..482107 /gene="rpsM" /locus_tag="Dhaf_0447" /inference="protein motif:PFAM:PF00416" /note="located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="YP_002456950.1" /db_xref="GI:219666515" /db_xref="InterPro:IPR001892" /db_xref="GeneID:7257414" /translation="MARIAGVDLPREKRVEVGLTYIYGIGLPTAQKILARTGVNPETR IRDLSEEEVNRLREVIDKEIKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQR TKTNARTRKGPIKTVGAKRKK" gene 482126..482515 /locus_tag="Dhaf_0448" /db_xref="GeneID:7257415" CDS 482126..482515 /locus_tag="Dhaf_0448" /inference="protein motif:PFAM:PF00411" /note="located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11" /protein_id="YP_002456951.1" /db_xref="GI:219666516" /db_xref="InterPro:IPR001971" /db_xref="GeneID:7257415" /translation="MARKVVRTKRRERKNIATGVAHIKSTFNNSMVTITDPKGNVISW SSAGALGFKGSRKSTPYAAQMAAETAAKAAMEHGLKEVECFVKGPGAGREAAIRALQA AGLEVNMIKDVTPIPHNGCRPPKRRRV" gene 482528..483154 /gene="rpsD" /locus_tag="Dhaf_0449" /db_xref="GeneID:7257416" CDS 482528..483154 /gene="rpsD" /locus_tag="Dhaf_0449" /inference="protein motif:PFAM:PF00163" /note="primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S4" /protein_id="YP_002456952.1" /db_xref="GI:219666517" /db_xref="InterPro:IPR001912" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR005709" /db_xref="GeneID:7257416" /translation="MARYTGPVCRLCRREGMKLFLKGDRCYTGKCAIDRRAYAPGQHG QSRGKKPTEYGIQLREKQKVRRIYGVQEKQFRSYYDKANRQKGIVGENLLRLLERRLD NVVFQLGFATSRPEARQLVRHGHFTINGRRVDIPSFLVRVGDVVGVKEASKSSPRLKE ILSSLDRTPPKWMSLDANAATGTIIALPDREDIQLPIQEHLIVEKYSR" gene 483218..484165 /locus_tag="Dhaf_0450" /db_xref="GeneID:7257417" CDS 483218..484165 /locus_tag="Dhaf_0450" /inference="protein motif:TFAM:TIGR02027" /note="catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit alpha" /protein_id="YP_002456953.1" /db_xref="GI:219666518" /db_xref="InterPro:IPR011260" /db_xref="InterPro:IPR011261" /db_xref="InterPro:IPR011262" /db_xref="InterPro:IPR011263" /db_xref="InterPro:IPR011773" /db_xref="GeneID:7257417" /translation="MLEIEKPKIECVERTDDNSYAKFVVEPLERGYGITLGNSLRRIL LSSLPGTAVTSVKIEGVLHEFSTVPGVLEDVTDIILNLKSLALKGHTDEPKVLRLEAE GEGVIKAGDIITDADIEILNPDLKIATLDKDGRLFMEMTAERGRGYVSADKNKKPDQA IGIIPIDSIFAPIYKVNYTVEDTRVGMVTDYDKLTLEVWSNGSITPEEATSLAAKILS EHLRLFIGLTDKLNNVEIMVEKEEEAKDKILEMTIEDLDLSVRSYNCLKRAGINSVEE LTQKTEEDMIKVRNLGRKSLEEVESKLKELGLGFRKADD" gene 484192..484530 /gene="rplQ" /locus_tag="Dhaf_0451" /db_xref="GeneID:7257418" CDS 484192..484530 /gene="rplQ" /locus_tag="Dhaf_0451" /inference="protein motif:PFAM:PF01196" /note="is a component of the macrolide binding site in the peptidyl transferase center" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L17" /protein_id="YP_002456954.1" /db_xref="GI:219666519" /db_xref="InterPro:IPR000456" /db_xref="GeneID:7257418" /translation="MAYRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIA EKMITLGKQGDLAARRNALTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGD AAEMVLIELV" gene 484718..485761 /locus_tag="Dhaf_0452" /db_xref="GeneID:7257419" CDS 484718..485761 /locus_tag="Dhaf_0452" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ecf:ECH74115_1228 4Fe-4S binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002456955.1" /db_xref="GI:219666520" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257419" /translation="MSIKKEKKSRLKLLNQDQAPLERRVVQLLFGLITLLIGIQFIRF VNSYADPNAALLVHRPAGVEAFLPISALVALKSWLYTGIFDIIHPAGLVILLLAMALS LLFKRSFCSWICPIGTLSEGLAILGRKLWGRNFVLPRWLDYPLRSLKYILLSFFLVFI LILMDGPSAYGFLQTPYNMIADVKMLDFFKNLTVTGMTVIAVLALLSVVIQNFWCRYL CPYGALMSLLSIFSPWKIRRNGDTCISCQKCTAVCPNQLKVAEAKAIWSPECSGCLNC IKSCPVKGTLEFSLPSSGGKELAFDPKRTAIALILVWFMVVGLAKFTGHWETSIPPEM YRVLIPQAEQLNH" gene 486086..487666 /locus_tag="Dhaf_0453" /db_xref="GeneID:7257420" CDS 486086..487666 /locus_tag="Dhaf_0453" /EC_number="3.1.3.26" /inference="protein motif:PRIAM:3.1.3.26" /note="PFAM: extracellular solute-binding protein family 5; KEGG: cbt:CLH_1825 heme-binding protein A" /codon_start=1 /transl_table=11 /product="4-phytase" /protein_id="YP_002456956.1" /db_xref="GI:219666521" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7257420" /translation="MKKGKRFIALALMVLLVGISITGCGGGSTSTGSPDSGEKVDKAK ETLIYAQGAEPRGLDPALVDDGESAKVMINIYEGLLQYNKDSTKVEPSLAKKWDVSED GLTYTFYLQEGVKFHDGTDFNAEAAKFNIDRQIPPQATPDMAYGSFVYGSVKSVEVVD NYTVKINLTDPSTPFLNNLAMVMSAPMVSPKALQDNNNNVNQTPVGTGPYKFVSWAKD ENIVLVRNDEYWGEKALTKNVIFKFIKDNSARVVALNNGEADMIDGIDATVVDQITGA GNKVFQAPGMNINYMAYNTSKAPFNDAKARKAVSQAINVPELVDSLYQGYSETATSIL PTFMEGYDKSITQAAYDPAASAEALKAAGITNVHIITYTNPRPYNAATGQALAEAIQG YLSKVGVTATIDSFDWTTYKEKIKAGDYDICFYGWIGDNGDPDNFMYLLAHEDPTMNV ARYANPEFNNLIKEGIKAPAGPERNKIYTELEKIAAADAAWLPISHAQTLAAYRPNVQ NFLYHVTGVTPFAGVSKQ" sig_peptide 486086..486184 /locus_tag="Dhaf_0453" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.290 at residue 33" gene 487827..488834 /locus_tag="Dhaf_0454" /db_xref="GeneID:7257421" CDS 487827..488834 /locus_tag="Dhaf_0454" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbt:CLH_1826 dipeptide transport system permease protein DppB" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456957.1" /db_xref="GI:219666522" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257421" /translation="MLKYIIKRILMLIPVLIGVSIIVFLIMRVFSPDPAPIVLGQHAT QETVDVWRQANGLNDPIPLQYLHFITGALQGNFGTSYYTKAPVIEEIMSRFPATIELA LFAIIIASVFGIIIGIISAVKKNSLFDNAGMFLALVGVSMPIFWLGILLIILFSGTLH WLPSSGRIDPLLRPMSVTGFYLIDSLIAGDLEAFADAFQHLILPGTALAMYSMAIITR MTRSSMLETLQQDYIRTARAKGVSEGKVIRKHAFRNGLIPIVTVIGLQLGSLLGGAVL TETVFSWPGIGSYTVACILKSDFPVVQGVVLLIATVFVLMNLLVDVIYAFLDPRIKYS K" gene 488847..489776 /locus_tag="Dhaf_0455" /db_xref="GeneID:7257422" CDS 488847..489776 /locus_tag="Dhaf_0455" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbt:CLH_1827 glutathione transport system permease protein GsiD" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002456958.1" /db_xref="GI:219666523" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257422" /translation="MKNTNVSSSDNTLQAAEYVEKPESQLKEMWDTLKQNKAAVVGLC IIIMLVLISLVVWVSNLLGIQVLPYDPNYSDMSKSFTHPNAEHWFGTDQLGRDMFSRV MDGTKISLFVGIAAVSISLTVGVVLGAIAGYRGGRTDTIIMRFMDMILAIPSILLAIA FMAALGKGLDKAVIAIGLVSIPEYARIVRGSILSIKESDYVQAAKVIGNRDSRIIFKH ILPNIVSLIVVRATLGISTAVLDTAALGFLGLGVQPPFAEWGDMLGRARGFIFTAPYT LIFPGIAITITVLAFNLLGDGLRDALDPKSRIK" gene 489790..490788 /locus_tag="Dhaf_0456" /db_xref="GeneID:7257423" CDS 489790..490788 /locus_tag="Dhaf_0456" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: cbt:CLH_1828 oligopeptide transport ATP-binding protein AppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002456959.1" /db_xref="GI:219666524" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257423" /translation="MLLEVKNLKTEFKLKRGTVRAVDDISFSVDKGEILAIVGESGSG KSVTSLSIMGLLQNPGKIAGGDILFDSQNLTRMNKKELQDIRGNKISMIFQEPMTSLN PVQRIKDQIMESLMIHKKINKKEALARTIELLDMVGIPSAAQRADDYPHQMSGGMRQR VMIAMALSCEPQLLIADEPTTALDVTIQAQILDLLYHMREKFNMAVLLITHDLGVVSE AADRVIVMYCGKIVEEADVKTLFKNPLHPYTVGLLNSIPQIDDDSDERLYMIKGMVPN PLNMPPGCSFSDRCDRSMERCTRETPELLEIDGHKVRCFLYEEAQEEAEEGGLAAQ" gene 490785..491750 /locus_tag="Dhaf_0457" /db_xref="GeneID:7257424" CDS 490785..491750 /locus_tag="Dhaf_0457" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: drm:Dred_2450 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002456960.1" /db_xref="GI:219666525" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257424" /translation="MSVLMEIQNLSKHFSVESNFFGKSSSLLKAVDDVSFTIHKGEAF GLVGESGCGKTTLGKIIVNLYSPTKGSMIFEGKDLTKLKENQRRAYCKDMQMIFQDPY ASLNPRMTVGDIIAEPIVINKLLPANKVEERVTYLLNCVGLAQHQRNRYPHEFSGGQR QRVGIARALAVEPKLIVCDEPVSALDVSIQAQVLNLLADLKDEFGLTYLFIAHGLNVV KHISDRVGVMYLGKLVEIAPKKELYANPLHPYTQALLSAIPIIDPEKKKRRIILEGDV PSPINPPAGCRFCSRCFKEMPVCKETAPELKEISPGHWVACHLFD" gene complement(491822..492370) /locus_tag="Dhaf_0458" /db_xref="GeneID:7257425" CDS complement(491822..492370) /locus_tag="Dhaf_0458" /inference="similar to AA sequence:KEGG:Nther_2058" /note="KEGG: nth:Nther_2058 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456961.1" /db_xref="GI:219666526" /db_xref="GeneID:7257425" /translation="MLLESIILAILIGFLVGGKLNSLFEINLKGLELLFLGALLQLFA FWSVKLHLEWANYWVIPFSHSLSYLLLMGFTLKNRAYRSFSLVALGIALNGVVIVLNG GLMPVDPAYLPEASRQLLQAGTGTHGILTDSTRLKILADILFINIPVLGKQLFSLGDI LIDLGMGTFIVMQMRRSYDIPQ" gene complement(492389..493675) /locus_tag="Dhaf_0459" /db_xref="GeneID:7257426" CDS complement(492389..493675) /locus_tag="Dhaf_0459" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: nth:Nther_2059 metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002456962.1" /db_xref="GI:219666527" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7257426" /translation="MLKANFKFRSYFNFIVFCATLILIWSMLSTHWEIGMLSSFLIFA VLTVASECLPVALPKGGYVTVSCAVFVAAAILFPMGVILPIATCGALILFGKAAEDQP LWKRFFNASQFIISLAMAKTVLIQAGLTDFAVDIRHLPFYLLAAFTYMLSNVTLVSIA LGKISGKSPWAIWKGNIRWSVPNFLALAPLGVLMAMIYVRYGPLGLIMLSVPLLLARH SFQLYIDMRKNYLNTVTALVQALEAKDSYTSGHSSRVAQWSIKLAEEMNLPEDRVEFI KYAGILHDVGKIGVSETILNKKGKLDDAEWKFICNHPVIGQNIIQSIDFLFDVGSAVR FHHERFDGAGYPDGIKGKDIPQESRIIAVADTYDAMTSSRSYRQALSSSEAIAELRRV AGSQLDPEVVEAFCRVIQKENQMEKLSPITDMPIAN" sig_peptide complement(492389..492481) /locus_tag="Dhaf_0459" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.881) with cleavage site probability 0.596 at residue 31" gene complement(493946..494605) /locus_tag="Dhaf_0460" /db_xref="GeneID:7257427" CDS complement(493946..494605) /locus_tag="Dhaf_0460" /inference="similar to AA sequence:KEGG:Teth514_0472" /note="KEGG: tex:Teth514_0472 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456963.1" /db_xref="GI:219666528" /db_xref="GeneID:7257427" /translation="MSGEMIWASYEEAIKKIRSVIGTRIKGNESNEISEIHILANSER NPKQIVRDVESVLAAQFGIEIDHKIVSVVQLEQQEDEESPSPNFPPKRAQIRPKLISI SLHTNKMMAEVKVELSMGDETYEGIASGTSTTYNRLRLFVDATINALSGSLMEKLFFA TEDVMITRLGKYQVAQVIICLITPLGEQNLVGCALVKNDEREAIVKATLDAVNRKLWF Y" gene complement(494725..495426) /locus_tag="Dhaf_0461" /db_xref="GeneID:7257428" CDS complement(494725..495426) /locus_tag="Dhaf_0461" /inference="protein motif:PFAM:PF00849" /note="PFAM: pseudouridine synthase; KEGG: aoe:Clos_0690 pseudouridine synthase" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_002456964.1" /db_xref="GI:219666529" /db_xref="InterPro:IPR006145" /db_xref="GeneID:7257428" /translation="MFTIPIVYEDNHLLVVDKPPNILSQKDSTGDMDILTLLKQDIKI RYNKPGNVYLGLVHRLDRPVGGVMVFAKTSKSAARLSEQIRNREFTKTYLALIQGQPA KQKNTLIHYLVKDEKSNKVSAVKKGAKGAKEAILDYEVVHSQSDLSLVKVNLRTGRPH QIRVQFAHLGHPLYGDYKYGKIVKTSKTSLTKPHLGLWSYEISCLHPISKGQIHFKSY PHQHKPWNQFDLGLP" gene complement(495569..497179) /locus_tag="Dhaf_0462" /db_xref="GeneID:7257429" CDS complement(495569..497179) /locus_tag="Dhaf_0462" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: amt:Amet_0759 flavocytochrome c" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002456965.1" /db_xref="GI:219666530" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257429" /translation="MQKESSNNKEEELTMNRRDFLKKASLGAAVVAGSGFLVGCNTTD ATAPASAPEKWDMETDVAIVGSGNGGLSAGCAVVEEGKKAVICEIAGFIGGGSIYSGG GIHCWGVNTWEEYRKHFEDLHDPVLGKTYVETFRQTYIPWLQKNGFPITPAGGTRGYT KDWTMGSGEPGYLKQKSYFDALHKFFESKGGQVLLSTRVMRLVIDEAGEVCGVHALKN DGTQLFIKAGAVILAAGGFQANKGLTARYMGPYGDSIRTMGVPYNTGSGMLMAQGVGA LTGGSFSTFSGTLIGISPNPQTEENPEAWEKARGSDPQSLPGIGDGRPPAIGWVSFLF PEDTTGLLVNLEGKRFIDESSPIDAKYPRVPQSIIKQKRGMALMIGDQAIYDANKSSE AIMKMNEAQGCLTVKGDTLEELAVKLQETYGFYKGAFLKTISEYNKAIDNGTADQLDV PRVAGHHKIAQGPFYAFPTGTCAYHTFGGLVINEKAQVLDVQRQPIKNLYAAPPTAAM FKEPYGGGVAAAGTFGYIAAKVITKGSV" sig_peptide complement(495569..495688) /locus_tag="Dhaf_0462" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.628) with cleavage site probability 0.550 at residue 40" gene 497237..497335 /locus_tag="Dhaf_0463" /db_xref="GeneID:7257430" CDS 497237..497335 /locus_tag="Dhaf_0463" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456966.1" /db_xref="GI:219666531" /db_xref="GeneID:7257430" /translation="MNFIMQKVCQRLQELNCARVIKDFRLKTVNTP" gene 497594..499561 /locus_tag="Dhaf_0464" /db_xref="GeneID:7257431" CDS 497594..499561 /locus_tag="Dhaf_0464" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dps:DP2241 transcription activator Stc" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002456967.1" /db_xref="GI:219666532" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7257431" /translation="MRLHDCLKLVRAEGIDPAYFPKIKDEWQRFLAGEKVNKQMVPSE VIESWERSRSYGIDPYGTDPHPVNLSGKEYKNLQEILNRYGFFFERIVELVEQDDLTL YLNTADGLNYHLFRSGGMSGHASLGHCNEKTVGTTASCLAKLYNQPILLVHPYRYSQN YTQNHGVSAPIHNEKNEVIGALGLGFEDPRFCIQAYSMISFIAQAFDSLYLPLTNGYE KHIQKIIDCMPHGVAFVDERDTVQLYNNKILELLKIRRKNNIESELNKHLARLGVGAG FKDKQEAAVTCAEIQVDNEKPYKLILLKDRLEGRKPGISPSPEGEGKGLFTFDQIIGE STLLKEAKKVAANVARTSVPVMIHGESGTGKEMFAQAMHCASPRRNGPFVAINCGALP GELVESELFGYEEGSFTGALKGGRIGKVEAASGGTLFLDEIESMPLKDQIKLLRVLST GKVQKIGSTKEIQVDVRIVAATKIDLLKHADDGLFREDLFYRISTFIIELPALRQRKE DIGALAEYFIKKLASKYDRGKIKMDPVFVDALQRYYWRGNVRELEHAMERAIIMLEDG ETLMLEHLSPGIQQAYRKRTVEKLVAETVQTTSHRQGLLELAERRVIEYVLELVDGNQ SLAAQQLGINRRTLYTKLNGKSNSGREVLDA" gene complement(499693..501267) /locus_tag="Dhaf_0465" /db_xref="GeneID:7257432" CDS complement(499693..501267) /locus_tag="Dhaf_0465" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: nca:Noca_0200 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002456968.1" /db_xref="GI:219666533" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7257432" /translation="MTLNRRDFLKKASLGAAVMAGSGFLVGCNTTNVTPPAATPDKWD METDVVVVGAGNGGLSAGAAAAEEGKKVIICEISGFIGGGSIYSGGGLHTWGTKTWEE YKAHTEDLHDPVLAKTYVETFRQTYIPWLQKIGIPITPAGGDRGYLKDYTMGSGEQGY LRQKAYFDALQKFIEGKGGQILTNTRVRQLVIDENGAVNGVYAQKKGENPVFIKAGAV VLAAGGFQANKGLTAQYIGSYGDTVRNMGTPYNTGSGMLMAQGVGALTGGSFSTFSGT LIGISPNRQTEENPEEYEKARSGDPQTLPGIGNGRPPAPGWVSFLFPEDTTGILVNLQ GKRFMDETSPIDAKYPRVPQTIIKQKRGMALMIADQAIFDKNKSSDAILKMNESQGVK VIKGNTLDELATKLQDAYGVYKGTLIKTINDYNTAVGNGTAAQLDVPRVGGHFKVAAG PFYAFPTGVAIYHTFGGLIINEKAQVLDLQRQPIANLYAAPPTAAMFREPYAGGIASA GTFGYIAGKVIAKGSV" sig_peptide complement(499693..499776) /locus_tag="Dhaf_0465" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.967 at residue 28" gene complement(501582..502829) /locus_tag="Dhaf_0466" /db_xref="GeneID:7257433" CDS complement(501582..502829) /locus_tag="Dhaf_0466" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_2032 putative transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002456969.1" /db_xref="GI:219666534" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257433" /translation="MNKTTRGWTVTFAGTGINLALGVLYTWSVFAAALTEQLAWSKTA ASLPYTVACAVFALMMVPGGRLQDRFGPRWVATAGGIFAGGGLILSSLTDSLFVLTLT FGLIAGIGIGLGYSAATPAAVKWFPPQKKGLISGIVVAGFGLASLYIAPLTNSLIGNL GVKSAFRIEGLIFLFAIVALSQVLAVPQSNPTPTAPSTPASPQAATSLNAPPSPPPAA KGDFSWQEMLKDPRFYLLWVMFAAGATAGLMIIGQLSTITKLQTGISWGFAMVALLAI FNAGGRVLAGWLSDRIGRSWTMRIFFSLQGLNMLAFTFYSSPALIALGAIMTGLSYGS LLSLFPSATYDFFGTKNGGVNYGLIFTAWGVGGVFGPLMAGAVVDLTNSYFYAYLIAA ALCLIAAFLTIFLKSSPLEAEKA" sig_peptide complement(501582..501677) /locus_tag="Dhaf_0466" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.875 at residue 32" gene complement(503098..505029) /locus_tag="Dhaf_0467" /db_xref="GeneID:7257434" CDS complement(503098..505029) /locus_tag="Dhaf_0467" /inference="protein motif:TFAM:TIGR02188" /note="TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0659 acetyl-CoA synthetase" /codon_start=1 /transl_table=11 /product="acetate/CoA ligase" /protein_id="YP_002456970.1" /db_xref="GI:219666535" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR011904" /db_xref="GeneID:7257434" /translation="MEEKNLEALLEEDRQFIPSEEFHKNALIQSADIYEQGQSLGFWE EQAKQLSWLSPWEKTLEWNPPFAQWFVGGKLNASANCLDRHLQDWHRNKAAIIFEGEN GDSQVLTYQDLHREVSKFANVLKANGVNKGDRVTIYLPMIPEAVISMLACARIGAPHS VVFGGFSSEALRDRVIDAQAKAVITSDGSFRRGNTIPLKDNTDIALDGVDCVEHVFVI QRTKQTVQMKEERDLWYHEEMAKASPVCPAEPMDAEDMLFILYTSGTTGKPKGVVHTT GGYMVGVSTTHRWVFDLKEEDVYWCTADVGWITGHSYIVYGPLANGATVLMYEGSPDY PNRDRFWEIVEKYKVTILYTAPTAIRTFMKWGPQYPQSRDLSSLRLLGSVGEPINPEA WMWYYKYIGGERCPIVDTWWQTETGMIMMTPLPGITSLKPGSCTVPFPGVRIEVVDSA GHPVPKGGGGYLAIKEPWPAMLRNIYGDPARFERTYFGNWPGVYFPGDGAKWDKDGYF WILGRVDDVINVSGHRIGTMEVESALVDHPSVAEAAVIGKNHEVKGQALACFVTLKEG IEITPDLEDELKKHVAKKIGALARPDDIFFTAELPKTRSGKIMRRLLRDIAEGRAIGD TTTLADASVVNTLKANYQE" gene 505353..506168 /locus_tag="Dhaf_0468" /db_xref="GeneID:7257435" CDS 505353..506168 /locus_tag="Dhaf_0468" /EC_number="5.4.99.12" /inference="protein motif:TFAM:TIGR00071" /note="KEGG: dau:Daud_0255 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase A" /protein_id="YP_002456971.1" /db_xref="GI:219666536" /db_xref="InterPro:IPR001406" /db_xref="GeneID:7257435" /translation="MDDKRNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLETVWAKLV EEQVTLNTAGRTDTGVHAAGQVVNFRTGARIPVDKIPKAFNSLLPRDIRILAAQEAAE DFHARFSAKWKRYDYRIDNHPVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKA FSAAGGTSKTFERTLYLCQVAENQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQP GEIPDILASLDRKRGGVTATPQGLTLSYVHYGEELPRDIFPELFQEGVSHDSR" gene 506430..507590 /locus_tag="Dhaf_0469" /db_xref="GeneID:7257436" CDS 506430..507590 /locus_tag="Dhaf_0469" /inference="protein motif:TFAM:TIGR00543" /note="TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: llm:llmg_1828 menaquinone-specific isochorismate synthase" /codon_start=1 /transl_table=11 /product="isochorismate synthase" /protein_id="YP_002456972.1" /db_xref="GI:219666537" /db_xref="InterPro:IPR004561" /db_xref="InterPro:IPR015890" /db_xref="GeneID:7257436" /translation="MNYQVKEVALKDSFAFWQSFEDEERVLFYHPFQQQLIMGARRLK TFGPGESYRGYPFVFSTRTFFPTLKDPKWSGLGNETIAFQYYLVEEKAGQKLYYAHET ADISAVPPKEFASHRHDYEILADDYQEWQELFQCAKQKVLAGKVQKVVISREIKIQCN TMVSVESVLKNLMEKNPHSFVFAYCKEGKTFLGATPEIVARKEKGQIMSYALAGTRAR TADEEDEQGKTALLNDPKNRHEHQIVLDYIAKVMNTYSDEVLIGETTTLQLRNLYHLK TPLAAKAKENSSLTAWVARLHPTPALGGYPVAEALAIIARWEKHERGLYAAPLGIMNE EGDGIFVAGIRSALIEGRTVYAYTGCGIVASSECAEEYAETAHKAKTILESL" gene 507606..509258 /locus_tag="Dhaf_0470" /db_xref="GeneID:7257437" CDS 507606..509258 /locus_tag="Dhaf_0470" /inference="protein motif:TFAM:TIGR00173" /note="TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: llm:llmg_1829 2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase" /codon_start=1 /transl_table=11 /product="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase" /protein_id="YP_002456973.1" /db_xref="GI:219666538" /db_xref="InterPro:IPR004433" /db_xref="InterPro:IPR012001" /db_xref="GeneID:7257437" /translation="MTNYIAALVDELYQLGVREAVISPGSRSTPLSVLFCEYGFQVYV GIDERSAGFFALGIAKEKERPVVLVCSSGSAVAHYFPAIVEAKHSHVPLIVLTADRPP ELRQVGAPQTIDQIKFYHDYAKYFEELALPEEREGMYRYVRGVMRKAYVSSLDQGYGV AHINIPLREPLSPDLDGVDFTAGRLDYPFAWKTGEKGLTMDSSVFQDKKGIIICGGDP YADYHREVLELAERLKAPLLADPLANFRNDDHPLIMDCYDAFLKSDAVKVELKPEFII HFGQTPVSKRLQNFTAMHQDVLYFQVNDYFQYRDPSLSISRYLVASPKAFARSVKVHN TDDGYSGRWQHYQARMRRRLNLAQDEEELFEGKLVQKLQDSLPEGSRLFVANSMAIRD VDYFLEARRQRIKVLGNRGANGIDGTVSTALGVATSGHPTVLLTGDLAFFHDLNGLLI GKNHGLNLIIVLLNNNGGAIFKYLPQSENKYFELLFMTPHGMDFSGLKTLYDLTYYEP VDYESFAQNFQEALTLSGVKVLNVKIDARLSKELHDRLTNLD" gene 509286..510089 /locus_tag="Dhaf_0471" /db_xref="GeneID:7257438" CDS 509286..510089 /locus_tag="Dhaf_0471" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: lla:L0170 YtxM-like protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002456974.1" /db_xref="GI:219666539" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7257438" /translation="MTIEGCRYYAEVKGSGPTLVCFHGFAENSGTWEALQLQDCQMVL VDLLGHGRSAKPRSLEPYELPVLLGHLHELMAELGCTGYSLLGYSLGGRIALAYGAAY PREVQGLILESSAYGIGDEEQRALRREQDVRLAQEILDRGIEWFAEHWSSLPLFASQT RLPPEIRAKIRARRLGNAPHALANTLLGSGQGVFPCLREQIPTLSMPILYIHGEQDEK YKEIGQELMDLNPGIKREMIPGAGHNAHLENPVTFAEIVGNFLQELAKP" gene 510170..511009 /locus_tag="Dhaf_0472" /db_xref="GeneID:7257439" CDS 510170..511009 /locus_tag="Dhaf_0472" /inference="protein motif:TFAM:TIGR01929" /note="catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA" /codon_start=1 /transl_table=11 /product="naphthoate synthase" /protein_id="YP_002456975.1" /db_xref="GI:219666540" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR010198" /db_xref="GeneID:7257439" /translation="MKFAWETAAAQYEDIIYETCEGMAKITINRPEVRNAFRPKTVKE LMDAFMVAREDSRVGVIILTGANHGQGQDQEAFCSGGDQRVRGHGGYVGEDQIPRLNV LDLQRLIRVIPKPVIAMVNGYAIGGGHVLHLVCDLSIASENARFGQTGPRVGSFDAGY GAGYLARIVGHKKAREIWYLCRQYTAREALAMGLVNKVVPFERLEEETVTWAREILRH SPTALRFLKAAFNADTDGLAGLQQLAGDATLLYYTTDEAKEGRDAYQEKRSPDFQRFP KFP" gene 511056..512417 /locus_tag="Dhaf_0473" /db_xref="GeneID:7257440" CDS 511056..512417 /locus_tag="Dhaf_0473" /inference="protein motif:TFAM:TIGR01923" /note="TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: llm:llmg_1832 O-succinylbenzoic acid--CoA ligase" /codon_start=1 /transl_table=11 /product="O-succinylbenzoate-CoA ligase" /protein_id="YP_002456976.1" /db_xref="GI:219666541" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR010192" /db_xref="GeneID:7257440" /translation="MVVNWLKKQALEKPHKLFLNELSFQEVDRRVSDLAGRIYPFVKA EDRVALYAHNSVEMALFFMALQALQMEVFMMNTRLTGEERAKKLKTLNIRVTFSDDDT FIPFGRVLAGDYDEQARCREEEAPEKIAVIMDTSATSGDYKSVPLRRKQLDAHVQASR QVLGVREEDNWLLVLPMYHIGGLAILMRSLYNGTRVTLMGKFDEEQILKGIEEGSLTM LSLVPTLLMRIVNRIRQHRLRVVLVSGEFIPKSLVEICLAKRIPIYKSYGMTETTSQC TTFCVAENPAKLDAVGLPLPGVTLRIVNPDAEGIGEVAIQSPMVMDGYLGKEAVEGFL NTQDMGYVDEEGYLYILDRRKDMIISGGENIYPREIENVLYAHPEISECAMVGMKDEK WGQVPVLFVVSSLGDEELRDYLAGKLARYKLPRKIVHLRSLPKNATGKILKKNLAELA HAD" gene 512407..513543 /locus_tag="Dhaf_0474" /db_xref="GeneID:7257441" CDS 512407..513543 /locus_tag="Dhaf_0474" /inference="protein motif:PFAM:PF01188" /note="PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: llc:LACR_0769 O-succinylbenzoate synthase" /codon_start=1 /transl_table=11 /product="Mandelate racemase/muconate lactonizing protein" /protein_id="YP_002456977.1" /db_xref="GI:219666542" /db_xref="InterPro:IPR013342" /db_xref="GeneID:7257441" /translation="MRIEKSEVFHLNMPMKFSFKSAQTILNQRETLVIKVTDELGHSG FGEAVAFKEPFYTGETLPRAKEVLLQHLLPRLLGREIPHPFAIHSWPDLGYPMAVAGV ENALLDGFARRQQQPIMDAVFHEETQARIYGGMVLGDLEPATLLRQIEDYLQEGYVRF KIKIKPGDGFAKLQRVREKYPDLMLLADGNRSFQAEQLPELREMDQLGLLCLEEPLAS GNLVSYQRLQEQMRTPLCLDESIQTKADLIQAAELRACQAVNLKVGRVGGLAYVKEMI EICRKRKIHYWIGSMMESGISKILHVHLASLKDNYIPGDLSSSRRYFARDVIRPEITV QRGLIQVPRGPGLGVEIDEEALKYYTVDQRALERGTGPGINGPS" gene complement(513540..513977) /locus_tag="Dhaf_0475" /db_xref="GeneID:7257442" CDS complement(513540..513977) /locus_tag="Dhaf_0475" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbl:CLK_0149 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456978.1" /db_xref="GI:219666543" /db_xref="GeneID:7257442" /translation="MLNSTQRSAAQAAHETAFDLSLIKDERIGDVLFLIASMIALIST YQAEETIIIEEFSQTPQPDRSARTVAASSWTFLIGSILIAYVAIVRYREIAASAPDAS PLMLKGRWFTALGDIVSVIGFGLSALGDQLKAHASSEGPTIAR" gene 514347..514910 /locus_tag="Dhaf_0476" /db_xref="GeneID:7257443" CDS 514347..514910 /locus_tag="Dhaf_0476" /EC_number="1.11.1.15" /inference="protein motif:TFAM:TIGR03137" /note="KEGG: cpf:CPF_0784 alkyl hydroperoxide reductase, C subunit; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein" /codon_start=1 /transl_table=11 /product="peroxiredoxin" /protein_id="YP_002456979.1" /db_xref="GI:219666544" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR013740" /db_xref="InterPro:IPR017559" /db_xref="GeneID:7257443" /translation="MSLIGKEVNEFKVQAFVEGAFKEVTKGDLLGKWSVFVFYPADFT FVCPTELGDLADQYDEFKKIGVEIYSVSTDTHFVHKAWHDASDTIRKIRYPMLADPTA KLAKDFEVYIEEEGLALRGSFVVNPEGKIVAYEVNSNNIGREASELLRKVQAAQFVAE HGDQVCPAKWRPGAETLKPSLDLVGKL" gene 514916..516583 /locus_tag="Dhaf_0477" /db_xref="GeneID:7257444" CDS 514916..516583 /locus_tag="Dhaf_0477" /inference="protein motif:TFAM:TIGR03143" /note="TIGRFAM: alkyl hydroperoxide reductase F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpe:CPE0783 thioredoxin reductase" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase F subunit" /protein_id="YP_002456980.1" /db_xref="GI:219666545" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR017561" /db_xref="GeneID:7257444" /translation="MKELYDLIIIGSGSAGMAAGIYAGRSKLKTLVIDRDRAGGQIKI TSEVENYPGILNISGEELSQAMRRQAEKFGVKFRQAAVESVDLAGDIKKIRTAEGDYE ALAVIIATGSVPRKLGFIGEEEFRGRGIGYCATCDGEFFTGMDVFVIGGGLAAAEEGI FLTRYARKVTMIVRGDGFSCPQTISERVLAHPKIEVKFNTELREAGGDAVLRYAEFVN NRSGERWRYDVREQKQTFGVFVFVGYIPQSAEYAQEVRIDERGYIPTDESMGTNVEGV YAAGDIRPKELRQLVTAVADGAIAATSAEKYLVGKKERLGLGELGELGESGERDELSD EEKTPVTRQGTSLLDDSLKEQLVPILERLENRIGLLAFLEGSSGFSEELRSFLSEFAG LTDKVEVEFLNRGEDAVREKEAKITLFPAVAVLGPDGVYTGVQFHGIPGGHEINSFIL ALYNAAGPGQAVGEETLAKIRRVSRKVNFKIGVSLSCTLCPDVVTLAQLMALKNPLIE AEMIDVAHYPDFKNKYGIMSVPAIVVNDEKVVFGKKNLEELLELAGG" gene 516972..518984 /locus_tag="Dhaf_0478" /db_xref="GeneID:7257445" CDS 516972..518984 /locus_tag="Dhaf_0478" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_1382 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002456981.1" /db_xref="GI:219666546" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7257445" /translation="MMQMTRHVCPLKCYDTCSILAYTDNGRLLKITGDPQNSYTLGTL CAKGYSFVKHVYHPERILHPLRQSSRGSGDWQRITWEEALGEIARQIVQIYNRHNHLL PLGLLDGKANTGVLARSLSGMLSAMAPITEIRGPQSSGPGMDAQFLDFGRVRLKDPED MKKADLIILWGVNPAATAIHQMKILQQARQRGAKVILIDVFPSATAGRVDETIVVKPG GDGALALAVLRELMFKTSINYRFLVHEAEGWENLKDWLLEADPEEMRTIAGVTPQMVA DLANELRHSSNPAFWLGKGLQKYSNSGQNIRAIHALAAAGGVTENYGEGIFAARSGFS PFADLWDSDKWGNRKLSLPTLPVNHGDDGADIRMLWITQSNPLVQGTHLQKLRELMGG LDLIVGTDFFLTSTSRCCDIVLPAATFLEAEDLVAGEWHRWIGLNEQAIAPLGETRSE LEIAQSLAVAISEEAPGLCPFPVERPLSQWLERAVPPELCETLGIDSYRELKQGPRKI VQPDMLSDSHYPKYRFSVPQAMEWGCPELPLMVLPETAPQGYPYRLLNWRRADFFNSQ FAHLDWLLERQATDELSLSWELARQKGIGAGDKVVVYNSWGEVVLKAKIRHDLPLHLI LCSARQDINGKSINSLAGSQETDLGQAVNGVNEPAFHDVFVNIARD" gene 519181..521535 /locus_tag="Dhaf_0479" /db_xref="GeneID:7257446" CDS 519181..521535 /locus_tag="Dhaf_0479" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: fgenesh4_pg.C_scaffold_20219000001; . ; K00183 molybdopterin oxidoreductase, molybdopterin binding subunit" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002456982.1" /db_xref="GI:219666547" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7257446" /translation="MEISRRNFIKASGGLAAFGMIGTGSLNRWIRPAAAEGAEEEKIA YTFHPPNCGGRCSMKCTVRKGKLVKIEPNEWPDGHHKKVCLRGLSEVERVYSPDRLKT PLKRVGERGEGKFVAISWDEALTTIADKLTEIKGKYGGKSILWSNSSGVQYPMSTLAA LIGAQEHGALDFGIDMSQAGGQSIVMGPFNITNTNEITDWVNSNLVLLVGNNLLETSL TDAAFFFDAKEKGTKMVCIDPVFSTTAAKCDQWIPLRPGTDSALYLGMIHLVLNNQWY DQEYVRSYTSAPFLIREDNQRILRDEGNNYLVWDKNSDSPRPVDAPGILPELEGEFTV NGVKVKTVLTAFTEHIRQYTPAWAAKVTEIPEEVITDLTREYALGGPASIQWGLGGPD KWYHSDTTGRLATILAGLTGNIGRVGGGVGQGTQHVTCWSWVTAMGSWDLPPEFAPAP AEVPFSDIPTASTSIKAFFFQGNMLHQMIPDYNTSLKWADSLEFIAVVDNQHCDSVNY ADIVLPACSSFESEYDIAYLINERNHILLQQKVIEPLFESKSDFQIEKELAQKLGLDQ YLPETPEDYVRALLNSPDPALQGITVEALKANQCIMRLNVPDQPYVAYLDRVFGTEST KLEFYNELFLEDHCAFPVWEEPNEASPANPLYQKYPLMLGSPHARFRAHSTFSNARWL LQINNEPLVRINPIDAQARGIQNKEFVEVFNDRGSFQCRCQIVNDMRPGMVQLSEGWW SRYFQKGDLQEVTNPNKNPRGKKLLYGPIVAFLDTLVEVKKVEG" gene 521540..522151 /locus_tag="Dhaf_0480" /db_xref="GeneID:7257447" CDS 521540..522151 /locus_tag="Dhaf_0480" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hma:rrnAC1214 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002456983.1" /db_xref="GI:219666548" /db_xref="InterPro:IPR000813" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257447" /translation="MAKLGITIDQSRCVGCNTCAVACKMQNNVPMGMLWNRVLTESGE GLDSAEGEYPHLTKNWLTVACQHCENAPCVKVCPVGATYKAEDGRVLINYDRCIGCRY CMAACPYNARVFNWQRPVRQPDFSCGDAPVRPSGVVEKCSMCKERTDQGLEPLCVVVC PAKARKFGNLDDLNSPVSQAIRGKNSYRLLEELGTKPQVYYLR" gene 522165..523406 /locus_tag="Dhaf_0481" /db_xref="GeneID:7257448" CDS 522165..523406 /locus_tag="Dhaf_0481" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: hma:rrnAC1213 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002456984.1" /db_xref="GI:219666549" /db_xref="InterPro:IPR002016" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7257448" /translation="MDNKQKNLIWFGILGLLTLAGLGAWLYQMANGLILTGMRNIVSW GLYITAFMFFVGLSAGGLIVSSSATVFNIAPFKKVSLPAVLLSVVCVIMAALFIVVDL GKPQRMFNLLLHSQFKSPLMWDVIVITAYLLISVLYLYFMTRPNPDQRKIRIMSRIAL PVAIGVHSVTAWIFGLQIARVAWHSALMAPLFVASALDSGLALLLIVLLALNRSGKYK VEDQLFSSLAGLLAVFVAVDAFFIGCEVLTFIYPGEEKVMNAVSLLFTGSLAPFFWGE ILLGLFLPFLILVFARNRAKKSSILLASVLIVVGVFFKRVWLLFSSFVFPLVPGQLGV TLGEFKEGVDSIVIPNIWATAGSYSPTMIEGLIFLGIISSGILLFRLLFQGLISAQSP KALLSENITSRSNTSQVLGGK" sig_peptide 522165..522257 /locus_tag="Dhaf_0481" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.604 at residue 31" gene 523409..524125 /locus_tag="Dhaf_0482" /db_xref="GeneID:7257449" CDS 523409..524125 /locus_tag="Dhaf_0482" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1390 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002456985.1" /db_xref="GI:219666550" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7257449" /translation="MKLSWEEVCSLRTNLYGFLGNCLLESVPEEGSVSMQREFWDEFP LESANPQMKDGLSRIISCTEYLAKLPPSQASQEVQLEFMDLFLGPGQPKAPPWESVYR TPERLLFGWPTQEVRKIYGKAGFEISRKNQLPEDHLGLELMFLAMASDTLARLITGKG SKNKIFEMIKLQRDFISNHPLTWIADFHEDAYTKGTIGFYSGLIQLIWGILLWDLDLL EEVGRNVQPGPLCTGEGERI" gene 524122..524646 /locus_tag="Dhaf_0483" /db_xref="GeneID:7257450" CDS 524122..524646 /locus_tag="Dhaf_0483" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1381 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002456986.1" /db_xref="GI:219666551" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257450" /translation="MSWRFLVNPDLCLGCRSCEIACRNEFADQEGARWRWLKEVEDHS GLHYFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFHVPK YSLSSGRVDKCNLCFHRLDKGLPAACVAACPVNALCHLFPNEPDPMDARGSVTGFTNI LITKPSIRFIHSSI" gene 524733..525947 /locus_tag="Dhaf_0484" /db_xref="GeneID:7257451" CDS 524733..525947 /locus_tag="Dhaf_0484" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002456987.1" /db_xref="GI:219666552" /db_xref="GeneID:7257451" /translation="MASHLQWVKQIARVQVENGGMMGLSRLLMQKIEKTVMVTGDQGH VLSCHIWNKQPVVIQERLSLPQSVAASTEMTRGISTFGGHKCAYYCWPIVNQKKEGYL WILTEKENLSAEEMEITEYLRSALLVEIVKKQEQLKLKQYLRDGSILNLLFNNSDQLE TMGQVWGRNLLITHIVMILEGQTKVPGHGLSEVRTKAENFIEAKYPGTVTGMIGKHLV VLFPYEKKTKEKDGHTNDNWKNIPRKAYSELQEILDDVKLWASVGSIYPDQPLLYRSY QEAKVALEMGKVLGKKEKLTFFNELGAIRLFYNQRKQDLRDFFEETLGPVLKYDRTND GNLLLTLWHYYASGGDISAATKGMFIHANTLRYRLRKVEELTASSLDDQEVRFNIYAA LKVGLMLGIFEV" gene 526242..526490 /locus_tag="Dhaf_0485" /db_xref="GeneID:7257452" CDS 526242..526490 /locus_tag="Dhaf_0485" /inference="protein motif:PFAM:PF07484" /note="PFAM: Tail Collar domain protein; KEGG: gur:Gura_0754 phage tail collar domain-containing protein" /codon_start=1 /transl_table=11 /product="Tail Collar domain protein" /protein_id="YP_002456988.1" /db_xref="GI:219666553" /db_xref="InterPro:IPR011083" /db_xref="GeneID:7257452" /translation="MDFALTGSIVLFPYNFAPKTCLLCDGKTYSMDQYIVLFSLIGDF YGGNAEEGIFAVPNLMNASPFPGMSYYIVYDGIYPSRS" gene 526566..526829 /locus_tag="Dhaf_0486" /db_xref="GeneID:7257453" CDS 526566..526829 /locus_tag="Dhaf_0486" /inference="protein motif:PFAM:PF07484" /note="PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4722 phage tail collar domain protein" /codon_start=1 /transl_table=11 /product="Tail Collar domain protein" /protein_id="YP_002456989.1" /db_xref="GI:219666554" /db_xref="InterPro:IPR011083" /db_xref="GeneID:7257453" /translation="MMVINEDLEVLLGAIYLFPYPFVPKRWLICDGRSLPTAQYEPLF SLLGNTYGGDGKTTFALPNLIGAEPHPNMKYCIAYSGIFPQRP" gene 526849..528216 /locus_tag="Dhaf_0487" /db_xref="GeneID:7257454" CDS 526849..528216 /locus_tag="Dhaf_0487" /inference="protein motif:PFAM:PF00754" /note="PFAM: coagulation factor 5/8 type domain protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein" /codon_start=1 /transl_table=11 /product="coagulation factor 5/8 type domain protein" /protein_id="YP_002456990.1" /db_xref="GI:219666555" /db_xref="InterPro:IPR000421" /db_xref="GeneID:7257454" /translation="MAINLALKKPTISSSYLQPYEPARAVNGDYMTPMSRWLCTHLPG WLTVDLGEVYSFDRWVVRQMPIAGWPSPDYCMSDFTLQGSNDAESWADLDNVAANTSA IVDRMLTAAASYRYVRIYVAKGLNANDKFASLMEFEIYQAPPSLAGLIVKDSDDHIVE LNPAFNSNTDSYKATVLLSVASVTLIPTVLDSSAVIKVNSMEVVSGTSSAPITINVGT NQIEVSVTVDGVTKIYTIEITKAAAANPYLKAISITGNNKVAISLDQTFDPKNSFNYT ALADYDDTSATVVLTADDPNAKLSVNGGASSSGPITFPVTMSSPGDYSTAIVVEAADG TTTQSYSLKVTRPSSAYISSIDPIPAVTFIKDPGPGTGFVRDYYNYKVVTIVAFRIKV FLEDYPNINKVSFQINSGSSTDLPHDAFSSPIPVPAAGSNFVTITVTSQTGGATKKYI IEVSK" repeat_region complement(528277..530247) /note="ISDha10" gene complement(528614..529915) /locus_tag="Dhaf_0488" /db_xref="GeneID:7257455" CDS complement(528614..529915) /locus_tag="Dhaf_0488" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cbe:Cbei_2804 transposase IS116/IS110/IS902 family protein" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002456991.1" /db_xref="GI:219666556" /db_xref="InterPro:IPR002525" /db_xref="InterPro:IPR003346" /db_xref="InterPro:IPR006172" /db_xref="GeneID:7257455" /translation="MSQFLHDFVVGIDVSSEFSVVAMLAPSGELIRKPFRIDHNPAGF HKLLDILKKEEERLQRKPIYFVESTGIFHLPLFFFLRSNNLKGFVLNPLSVHSTKNFD LRKVKNDSKDAEAIARLAKYQDVKVSLVPEPQILALRMMTREYYALSDTLTEMKNRLS TDLYLLFPGFLDVFSGAFGKTALAILKDFPSPRAILAADTDSLTSLISKTSRKGTAWA TKKVNQLKDCAQLASSMPHEFSWLDAKIKVHIDGIESMQASLDGVVTQIQAMIDSELF PADAKRHIELLDGIPGIGFLTAATLIAEIGDFRLFNSAKALTAFFGLDPSVNQSGKFQ GDRNKISKRGTRIGRRILFTIAMASIRTTRKGDEINPVLREFYAAKCVNKKKKVALVA VMHKLLHYIFAVLRDQKPFEIRQPEDHQSWRNTKLRQAPAA" gene 530260..534618 /locus_tag="Dhaf_0489" /db_xref="GeneID:7257456" CDS 530260..534618 /locus_tag="Dhaf_0489" /inference="protein motif:TFAM:TIGR02543" /note="TIGRFAM: cell wall/surface repeat protein; PFAM: putative cell wall binding repeat 2-containing protein; Listeria/Bacterioides repeat protein; KEGG: ctc:CTC02093 N-acetylmuramoyl-L-alanine amidase/putative S-layer protein" /codon_start=1 /transl_table=11 /product="cell wall/surface repeat protein" /protein_id="YP_002456992.1" /db_xref="GI:219666557" /db_xref="InterPro:IPR007253" /db_xref="InterPro:IPR013378" /db_xref="GeneID:7257456" /translation="MYTNLIKKTMTILLTLCLVLGMIPGHGVYVLAATNVPTGNYTIS SNGDYQLDAGYSGKITIAETATAVRIIGNGAHTDTSIGVEGGRSSALELTIEDLNITA PVSGGNSGEHGIDFSNTGNYGHKLWLKGNCSIMGDQAGIAVNDGVQLTIDKAADVAND ADAVLTVLGKNGSAAIGGYYKNNHTDYGSCGEITINGGTINATGAAAYPNFVYGAAGI GGSLISVQGFTKGGTITINGGIITATGGEAAAGIGGGMGFNYNGASQGIITINGGTVV ASGNKTGAGIGGGNTGGGYIININGGTITANGSADMAEGAGAGIGSSSFGFGSPTIVN ISGGTITATGGTNSNFGGSGIGSGYLSEQGTINITGGSITAIGGSNGGAGIGGTSGNN GEKVTISGNPLVKAFAGTGAEDIGKGKGMGGSSGTLKNGTDDWVYLKFNVTKEGSNVA GATININSSQYTTDAGGYAYCFAPKSNTAYTIDAAGCQQASGTASNAKISNLVNVTMT AAVTYTVTFESNGGSAVAAIPNVVENSTVALPAPPPTKAGYSFAGWYIDNDIFADEFT ADTPVTGNLTVYAKWTPLPPASYTVSFESNGGSAVAEIPNVVENSTVALPEPPTKAGY SFAGWYTDNDTFADEFTAGTFVTSNLTVYAKWTPLPPATYTVSFESNGGSAVAAIPNV VENSTVALPTPPPTKTGYSFAGWYIDNDTFANEFTAGTFVTSNLTVYAKWTPLPPATY TVSFESNGGSAVAAIPNVVENSTVALPTPPPTKAGYSFAGWYTDNDTFADEFTAGTFV TSNLTVYAKWTPLPPATYTVTFESNGGSAVAAIPNVVENSTVALPVQPTKAGYSFAGW YTDNGTFADEFTAITPVTGNLTVYAKWATLPTDDSSDRDDSTSPSTPTPPSTPPATVT GNVKDGATGGTVSNVTATVAKDSHNQITLTLPAAQIAVTKQPDGTITPLLDLAKVVIT KDTGTQLSISANGTFQIVNLAQGTDHTFKIGYDLGNGQKITIGTMDITVDPSGSVKLD VTLIDPYGIITDGRTGKTLAGAKVILYYADTARNKAAGKTPGTLIELPRLEEFKPNQN INPQNSDPSGAYGFMVFPESDYYLVANKEGYEEYKSPTISVEQDLVKWDFKMNQPLLG IKRLAGPTRVDTALEIAKATFTAKVKHVILATAANYPDALAGSVLAYKLNAPILLIDS SGEEQEKVLEYISMNLDSAGTVHILGGKGIVGSEIEEKIKARGFAKITRIGGKDRYET ALKIAEYLEVPQGTPVVLVYGEDYPDALSISSSAAAMQSPILLVGRNEIRPEISQALQ KIKPIKVYILGREGKISSAVEKQVAEAAGLGADKIVRIGGTDRYETALKIAQYFNLSG QNVSIATGKNFPDALAGSIYAANHNSPLLLCDEELSEEAAAYLRTRAITGGTLFGGEG AVSKAVEEMLKQIIGK" sig_peptide 530260..530358 /locus_tag="Dhaf_0489" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 33" gene complement(534737..536068) /locus_tag="Dhaf_0490" /db_xref="GeneID:7257457" CDS complement(534737..536068) /locus_tag="Dhaf_0490" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: blo:BL1133 protein with weak similarity to components of ABC transporter" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002456993.1" /db_xref="GI:219666558" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7257457" /translation="MTWKDILKMCLRNLRRRKSRTLLTVLGVLIGCCSIVIMVSIGIG TKVSQEEMLAEMGDLTIITVMVPNMGNDQNKLDDAGIRTIAQIPNVIAVSPKISPDEL FNDIYFKIYAGIGDRYINDWLPVAAYDSSSLEKLGFKLVDGAYPATTKGVLVGEMFAY NFRDSYRPEGSNRVDRYANIDFNNFDPDQLKNNMPDPYFNPLTSSLTLVLEKEGIAKY SIPLEATGRVKEDYNKGYETSEGVLLDLAFLEQILKDSGAAKNTTEKKSYQNALVKVD HISKVAEVEKEIKRLGFDTRSMESIREPMEKEARQKQLMLGGLGAISLFVAAIGITNT MIMSISERTKEIGIMKALGCYVKDIRIIFLTESGIIGFLGGVVGNVVSLIISLIMNFV SEGAGGSKLSIIPLWLIGFAVVFSIFIGVGSGYYPANKAVKISALEAIKSD" sig_peptide complement(534737..534856) /locus_tag="Dhaf_0490" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.949) with cleavage site probability 0.320 at residue 40" gene complement(536072..538645) /locus_tag="Dhaf_0491" /db_xref="GeneID:7257458" CDS complement(536072..538645) /locus_tag="Dhaf_0491" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bad:BAD_0511 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002456994.1" /db_xref="GI:219666559" /db_xref="GeneID:7257458" /translation="MKSTLQKLRYIMAMLLAIILIVSPLRTAAALGADTTGIKSNLAI TGYKVTDTSGNILSSVPSGYPINLEITVKNPGIKSSDISGSADIDVSKLVDSFSGSGN PEVTITSQNDDDPLAMTIKFSDVKYSGSGKTFKFMVGYKSLSVDYDITDLSITECVDQ ENKPVDNDKVTPTPTLLITGSLNRDTLKPDQLMDLTINIENLSDSSLQDAVVTLNPSE SIYLVAGKTTFFLDTIGGKQTRSFTVKIKTGSELPPASQSVGVDLKYNYDNGSAIVQG TASEKVNLISEIDESSEPILFISGVQTDEVLKSNGERDVTIKVTNMSDTMASKINVVL TPSDSIYFPNGKNSFFLPNMKGNSEERLTVRIKAAGALASTLQSIGVEVKYSYTNGSS IVQETATGKIIIVTADKSPAPVLFISGSQTKDILKGDEEKDVTLQITNMGETTASDIT VSLNPSDSLYFPDGQSSFFLKEIKGHTEESITVKVKAASEPSSSLQTIGVDASYSYDS GGGIVPGTASGKVVVVTESHKETDASVPYLIVSNYSYGGAPVAANTAFKLSMDFYNTS SNLSIENIVVTLETGENFSVASSSNTFYYESLGAGQTLTQDLDLQALLVANSGQTSIS GAKTVEVSFKYEYNTGSKRATNTMSEKLSIPIYLPDRFELAQPQLPDFVAVGQESVIT LSYVNKGKNPISNVEAAIEDITGEMETPAKVQQLGNIEAGKSSTIGFAFMPLQPGELS FTIRITYEDANLEPVIKEFPVLVSAFDAPPPMDMGMPEMAPEQDSKIPLPWLIGAAIV LLAGIGIAVMRIRKARAQKKISAIDFSWEEDAPAQDLPLTEDKTGGTAPSTDAPSKTE V" sig_peptide complement(536072..536170) /locus_tag="Dhaf_0491" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.370 at residue 33" gene complement(538655..539371) /locus_tag="Dhaf_0492" /db_xref="GeneID:7257459" CDS complement(538655..539371) /locus_tag="Dhaf_0492" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: blj:BLD_0892 SalX-type ABC antimicrobial peptide transport system ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002456995.1" /db_xref="GI:219666560" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257459" /translation="MDLEKPLIEIRNLRKEYIMGEEVVVALKRINFSINRGELCCIFG ASGSGKSTLLNQLAGMEKPSKGGVKIGGVPISHLNEDQLAEFRQKYIGFVFQSYNLLP MLTATENVALPLMFRGVPEGKRNAMAQSMLQKVGLGHRLHHYPGQMSGGQQQRVGIAR AFVTKPAVVFADEPTGNLDTKTTKEVMTMIKNFAGTFKQTIILVTHDPEMTVYADRIV TLVDGEIVSNEIKNKPINGN" gene 539758..542826 /locus_tag="Dhaf_0493" /db_xref="GeneID:7257460" CDS 539758..542826 /locus_tag="Dhaf_0493" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; glycoside hydrolase family 2 sugar binding; histidine kinase internal region; KEGG: cbe:Cbei_2171 signal transduction histidine kinase, LytS" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_002456996.1" /db_xref="GI:219666561" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR006104" /db_xref="InterPro:IPR010559" /db_xref="GeneID:7257460" /translation="MLDRLRRYFKIKQLIAVIILLSTMLLMLSTIYYTDAPEQESPAA VQGTLDLSSWDFTKDRSVFLNGEWDFYPGKLLQPEELPKETHYFMKVPGGWDKTKGAF LQKSRGNGTYRLSVKLPELQEQLGLKIHNIWMAHRLFINGQLVKESGLPSDSLEGYQA LNTPYVVVVEPAEELEIVIQVSNQVHFTGGIAHPIQLGLKNYIEKKNMLAFGGDMAVF LLFLMFGIYHLHMYNMRDKEKTYLFSGLFLLSISIVSITFGEKVLMQVFEEIPFAVAY KLQDFFLFASFAALTLFIQSLEPGTIKGRNLILSLMPVLIYLGVVILIPYHWYSPVKL YITFYANLLLFFYIIRLIYMLFYKKQGKLPLNESVYIFLCCIFAGVIIIDYNLYYSGY TNGNMIARLGIFAFLLSLNLFLSRRFTNKMNEVQALSEELIRSREIKDEFLARTSHEL KTPLHGIINISGHLLKGETSSLSLEQRENLLLLQDTSSRLSLLVNDLVDIIKLRHEDL QLNLITVDLYVVIQLVFQLLSFDLQGKEVKMLNKVKPMTFVEADENRLRQILYNITSN AMKHTEKGEIVAQAREEGLDIVLTISDTGKGIPQEHWELVFKDFNHDSLPQQDYKQGM GLGLYISRQLARKMKGEVWIADSVVNKGTSMAVRLAKGQCLNTEMTAGSVLERKVWSS KPTSSGLSEKMKKILIVDDEPTNIRVLSLMLEGEYQVSAAYSGEKALESLKNEKFHLL LTDLMMPGMSGIELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFT AEEVQWRVRSLLKLTDTMEKAFESEMAYLQAQIKPHFIYNALSNIIALCHEDGEKASE MLSLLSRYLRHIFQRDQNQQTLQLQQELDLIKTYVEIEQLRFGKHLHYETYVDPEILN KGIKIPTLLIQPLVENAIRHGLFNKEGEGTVSLRITEGEGFIHIIVEDNGVGMSEDEV GRILNGKGGKGVGLKNVLMRVASLPKAAFLIDSELEKGTRCSIFLPKELV" sig_peptide 539758..539862 /locus_tag="Dhaf_0493" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.814) with cleavage site probability 0.773 at residue 35" gene 542910..544847 /locus_tag="Dhaf_0494" /db_xref="GeneID:7257461" CDS 542910..544847 /locus_tag="Dhaf_0494" /inference="protein motif:PFAM:PF06580" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: ckl:CKL_2806 predicted sensor protein" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_002456997.1" /db_xref="GI:219666562" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR010559" /db_xref="GeneID:7257461" /translation="MIKRILAILIITIIGVSSILPSVISDSRGPDPLSLHAEAGTMDL SAWDIQKDPTLKLDGEWEFYWSQLLGPEDFQPDGGRIPQLTGYMRVPSIWSGKELNGT VLPAFGCATYRLVLKNIPYHGVLGLKKENVRLSSRVYVDGQELFSDGVPSLTEAEYES GNNPQLGFYYCDGSELEIIVQAANYDYINGGIPVSFKIGEQTAMLAQQEKGNLLGFSV LVTLWSIALLYLIFFINARYFKRKAASLLSFAIFCFLFAVGNALTDQRPLVMMLPDIS FEAIFKMKDFFLSASLIAVTVIFYQARKGIISLRMTGMVSAVYGCYLIAVLTLPIYLY YKLHPFIMLLNTIVLIILLARTTVLFLRCKKSDVLDYLLLFIAILALNLYSADSILFA LSLKTVSSLCQIYIVTFAFVTIFRLSMHYYEVLANLRISMKRTQDAEIAFLRSQIKPH FLYNALNSIAALCKEAPDQAEDVVIQLSEYLRGSFDFKTLDSLTTVKKETELLEAYLN IEKVRFGKRLNVEYDIDESINFPIPPLILQPLVENAVRHGLMSGVSGGTVKISIKKEM ANVVFSIEDDGIGMEPSQVKRLLEQAPDENGVGLWNINQRLRLIYGNELEVWSERGVG TRVSFQLPWNSRETSLSHGNL" sig_peptide 542910..542987 /locus_tag="Dhaf_0494" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.750) with cleavage site probability 0.596 at residue 26" gene 544874..545971 /locus_tag="Dhaf_0495" /db_xref="GeneID:7257462" CDS 544874..545971 /locus_tag="Dhaf_0495" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; transcriptional activator domain; KEGG: lsp:Bsph_0711 putative response regulatory protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and SARP domain protein" /protein_id="YP_002456998.1" /db_xref="GI:219666563" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR005158" /db_xref="InterPro:IPR013026" /db_xref="GeneID:7257462" /translation="MEVIVVDDEELSLNRLGNMLAGMPGVEVCGLFYTAAEALRYINE NKPDAVFLDICIPETDGLALANKIKDIDDSAKVVFVTGYDEYAVRAFELEAVDYLMKP ISRDRLEKTVQRLQRACIGTGRQSKPQMKVSCFGGFRAAVGDSDSGIVNWRSPKTEEL FAFLIFKKNVSRDEIVNTLWDGLEPDRALTNINSTMYYIRKALSPHGLEKCIAATRKE IRIDSELISCDLYEFERLLRGRPSSKDRVETLDRLAELYKGELFQGKAYEWSFSKSRS LESGFISALLETAEYYREKQGYEQAEKMYKRALEIDPFNEEICGHIIQICLKMGRKSE ALRLYLQMEKFLMEELGEKPQDKLKKFFEEQ" gene 546106..550758 /locus_tag="Dhaf_0496" /db_xref="GeneID:7257463" CDS 546106..550758 /locus_tag="Dhaf_0496" /inference="protein motif:PFAM:PF07679" /note="PFAM: Fibronectin type III domain protein; putative cell wall binding repeat 2-containing protein; Immunoglobulin I-set domain protein; Immunoglobulin V-set domain protein; Immunoglobulin domain protein; SMART: Immunoglobulin C2 type; Immunoglobulin subtype; KEGG: lsp:Bsph_2088 cell surface glycoprotein 2 precursor (S-layer protein 2)" /codon_start=1 /transl_table=11 /product="Immunoglobulin I-set domain protein" /protein_id="YP_002456999.1" /db_xref="GI:219666564" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR003962" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR007253" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013106" /db_xref="InterPro:IPR013151" /db_xref="GeneID:7257463" /translation="MNYRKVKKLLGMLLVVAMLLPMIPVSPVYADTPTDWQVLGNGAF PPQSTSLTSLPVDGGTTYAAVTVGTSKTAVYRLDESGNGQIGSDLEYAWNGSLYADND TLYFAYLKGDSELKLVKYNLNDMGGAWETLGTPTILTMTNEISLYAHNGILYVVYAQG GQAKLARYDEAGGGFSEIGSFANGYARSLSLKGDGDGNLYVSYIEVGYVNVKKLSSGG STLEQVGGAVSDFGTDASLFVYGGTPYVAFTNILNSQDQKCVVKKFEGDSWLTVGSGD GVSNDIAAGNSLYIDDEGTPYVAYEGGNGHNATVYRLENTSWVPVGYQGYASTGSASH LSLAVYDGIAYLAYGDAHNGNAPVVRWHELPPSSVWETVGSGPRSSPYANFTSLFMND GIPYLAFSDQWDNANRIVAEKFVGNQWEVVLNRYFAKSVQDGAVYVDENTDTPYMAYV TYDAHVEVLKLVNSGGVIDWNMVGSTTSLDELARGLSLYVHNGVSYVAYADMANDDSP VVKMFASGSTVPVPVGDVGETLASYVSMKGDAAGNLYLVFESSPSDRIKVMKKPYASD TWSMVGDFVSPGRTNGPSLYLYDDGSGNVTPYVAYADAQSDYRPIVRKFVGDEWVTVG DDYVSEDFTWETSLYVDGDGTPYVAYVIGEGEYSRVFKLDDNSWVPVGGDGYASDGDS SGISLAVWNGVPYLSYADHENEGRAVVRRYAPFGIAPTISAQPSHQTVTAGQTATFTV TATGTAPLSHQWKKDGTDIPGATASTLTITDAQASDAGSYTCYVSNAAGNITSNAATL TVNQLGALVLTAAPGNQQVTLTWNDIPEAAGYSVFKDNALLETVTGSAISVTGLTNGT TYHFEVKALDSNAVVIAASGQVSATPVTTPGIPTAITAVAGNGEATISFTAPSDHGGS PITGYIVTSSPGNIAATGTGTTITVTGLSNGTTYTFTVKAVNAAGNGTDSAASNAVTP QRPRSSDDESSGGNTTPVSSTPSGVTQITVDVKQGNTDSTVAQITVERRTGSDGKKTD TVTYQESKAAETVKKLKEENKDTARIVIPDEKDEVAETKVNIPVQALEVLAQGGINLQ IDTEEAKIDISKNTITGISQEVEGDLYFRLVPVKDEAQKKSTIDQALLKAALVSGNTD SSLSIVGNPVTIETNMSSTEADITLPLTGMTLPSNPAEKAALLQQLAVYIEHSDGDKE LVQGELVEYKEGVYGIRFHINKFSIFTVVRTDAFLASSAAKSLRLFGPNRVETAIAIA QASYPGKVAQAVLATADNYPDALAGSVLAHKLNAPLLLVGKTAKEQEALLAYLKDHVE TQGTLTLLGGNGAIPAAVEQTLQANGYNQIIRLGGANRYETALKIAEELKVEQGRPVI LAYGGNYPDALSVSSAAAVLQSPILLVEKNGISEGVKDKLTQIKPSKVYIIGLEGVIS QHVEEEVAQLTSLKQENIVRIGGADRYQTSLAVAKYFNLSGKNIGIATGNNFPDALAG SVYAANHNAPMLLLNDTIPGEVMDYLKSRELTGVTLFGGEAVLNAEIEQKLRELIK" sig_peptide 546106..546198 /locus_tag="Dhaf_0496" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 31" gene 550925..552016 /locus_tag="Dhaf_0497" /db_xref="GeneID:7257464" CDS 550925..552016 /locus_tag="Dhaf_0497" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; KEGG: bld:BLi00600 hypothetical protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and SARP domain protein" /protein_id="YP_002457000.1" /db_xref="GI:219666565" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7257464" /translation="MYTAIIVEDELNILKHMNKLVVSMDEFLIKGTFATPHEALAAFP DLMPDVAFIDIEMPRMNGLELARRLLKVKDDLSIIFTTAYGQYALDAFEVEAIDYLMK PIMKEELQRVLKRLNRVFGIQKRQGSLLKREPSFAVRCFGAFEVRDQQQQMVRWPTRK AEEVFAYFLANQGRYISKWELLKIFWPEIEEERAIPNLYNTIYRVKQALKTLPLSPKI QKINEGYILEAQRNLSDLGEFLEVMKQSKENSEIPLEASISLFFSYATPLFGDKDYFW SLHIEKYVAQEYGKLCHRLLLYYYEQNQLQKGEEIIQHYMAQYIEDEDMLRKWLKLVA HWQGYEEKSDEYRHRFNEKLASAELPLLE" gene 552410..553618 /locus_tag="Dhaf_0498" /db_xref="GeneID:7257465" CDS 552410..553618 /locus_tag="Dhaf_0498" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_0407 probable MFS transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457001.1" /db_xref="GI:219666566" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257465" /translation="MAKENKAQVVMIAAITALCILGDSMLYVVLPTHWQEAGLTSLWE VGALLSINRFIRVPLNPIVSRLYRKLSHRKGIILAILLSAMATASYGISGFWFLLLMR AIWGIAWTFLRLGAYFFILDISADENRGHYMGIYNGIFRLGSLVGMLAGGIIADIFGM KAVSFVFAGITLSALFLVYYSVYPSSGSTTPLATAAPPATYPLKITNVWKDSQIIWML LTGFLVTMLYQGAFTSTLSHLIDLRQTQQMAAHVMIASASLAGIIQAIRWGWEPWLAP WFGRKSDHWGRRPVLIIALLAASVLFALINTGVPFGIWIAIIFGVQLTATVLTTVVDA VAGDVASQTTVKTSIMTAYSIVTDLGSAVGAVSVYLIASAINIEVYYWGAALILLLLA FKWAAALRKA" gene 553724..554710 /locus_tag="Dhaf_0499" /db_xref="GeneID:7257466" CDS 553724..554710 /locus_tag="Dhaf_0499" /inference="similar to AA sequence:KEGG:Cphy_1858" /note="KEGG: cpy:Cphy_1858 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457002.1" /db_xref="GI:219666567" /db_xref="GeneID:7257466" /translation="MKHKVLGIVLGVEGAACVLFGILQTSFSSGFTAAMAFPFEQLGL LLRMLSFSGGAGNAAALLIYGAAALLPLLILFLLSRKRELQREDGLLALLSVVLFPVL YFMTNPGMIGSLFGGALGGSGGAGPAVGKAVLGGTVYSLVCGYFVLRLLRLCFESSTV RLQHYMMVLLSLLTVVFVYLIFGASFRELLHSLADLKAGNNGNEHLLGVSYVFLALQF AVNALPYIFDVLVAFAALRLLEDMGADRYSAESVEGADRLARLCGTALAATVLSSIAF NLLQLLFAQKLLVISSSVQIPVFSLAFVLAVLLVARFMEENKGLKDDNDMFI" sig_peptide 553724..553834 /locus_tag="Dhaf_0499" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.609) with cleavage site probability 0.504 at residue 37" gene 554721..554948 /locus_tag="Dhaf_0500" /db_xref="GeneID:7257467" CDS 554721..554948 /locus_tag="Dhaf_0500" /inference="similar to AA sequence:KEGG:Cphy_1859" /note="KEGG: cpy:Cphy_1859 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457003.1" /db_xref="GI:219666568" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257467" /translation="MGIQVHLEDVLKARGMTSKELCALVGITEANLSILRSGKAKGVR FGTINKICWHLKCDVGDILKFDGKLEEEDED" gene 554938..555930 /locus_tag="Dhaf_0501" /db_xref="GeneID:7257468" CDS 554938..555930 /locus_tag="Dhaf_0501" /inference="similar to AA sequence:KEGG:Cphy_1860" /note="KEGG: cpy:Cphy_1860 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457004.1" /db_xref="GI:219666569" /db_xref="GeneID:7257468" /translation="MKIKGRFMGLCLLVFIGCFLTGCQLAKEEGSAGRYEDRLVGVLV TTEYLDLFDFAGYVEDHIGSFSGGEVQIDGAGEKYQGRLYAELTKEILTDVESGHKVE REEYDFPGVEGIAYYSLRVPDTEEREGYFTTGSDEGISDGHTSLHSSDGGNSVALEGT VYVSPGLGRTYYFNPMYQSADGRVYVTSGSGISSGGEQSEGEALTQTMKADYTVTENG RTVKDSISVQLSIHMMYPPEEIVILQMGEDGAVISRGEYGPGEVPERITPEKDTAYLI VETKKRDNSGRILKDRAIYDRDKEYLEAFFCREDGICIKKQVPIERELPSLSAL" sig_peptide 554938..555018 /locus_tag="Dhaf_0501" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.976 at residue 27" gene 556134..557714 /locus_tag="Dhaf_0502" /db_xref="GeneID:7257469" CDS 556134..557714 /locus_tag="Dhaf_0502" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aoe:Clos_2199 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002457005.1" /db_xref="GI:219666570" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7257469" /translation="MNWTTFVTLILWEMGMWVINRRYTLTTIVIGSILCFVMILFYLL SLDKIRDIYIGETQKTVYGLKKSFLANTVDNMISVIDHRRDARAEAMERFVNRTAVAI NLKKGLADAEFNDFLISFFRDNPDYSFMSVILWDVGKDRAIYDGQNLAGSTWESTLNA VIPGLSAYTVLDHGAKKILLGVSKTYVDELVKTEIADIIRNSEFEGNTYIWVNEILNY EGGPHYAIRRVHPNLPETEGTYLSTEMRDIKGNQPYLTELEGIKKDGELYFEYYFKEL NSEKVSLKLTYAKLYKDYDWVIAMGVYQDDIQAYIDQTTEKSQVLASRLTLLLVLLFV AILILSFSLMVLIEKRHYRKSRKIMESEMNQDPLTMAGNRRSGTHDLSAAFKEYQASG YSPGIMIYDLDSFKSINDQYGHSVGDLVLIEVVKAISGMIRSSDKIIRWGGDEFVVIF YGLQEKNALVFGERILSKVSDLKILVAEGKEIGITLSIGFSFFKETDEDFAKVLKRAD QALYLSKSKGRNQVNIIL" gene 557831..558370 /locus_tag="Dhaf_0503" /db_xref="GeneID:7257470" CDS 557831..558370 /locus_tag="Dhaf_0503" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: sth:STH2076 putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002457006.1" /db_xref="GI:219666571" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7257470" /translation="MTRLLVLGMLEVQPMSGYDIQQALQLTDAERWGGVLIGSIYHAL KKMEQEGYVAVTSIERTGHRQKAVYSITEAGKIYLQELIKDALKMSSVLYPSTLYSGL SFYEKLAKDECRKALQQQRSALEEEYNAVKQGLAAKDAAMNHKIPPMVMLVMDNMLSL IKQQQDFVDKALELLDTEN" gene 558457..559176 /locus_tag="Dhaf_0504" /db_xref="GeneID:7257471" CDS 558457..559176 /locus_tag="Dhaf_0504" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1668 ABC transporter related protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457007.1" /db_xref="GI:219666572" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257471" /translation="MNLIEAKGLRKRFRNREVVKGIDMEIQQGEILALIGTNGAGKST TLAMLLGILPTDAGKITRWREDYRAHVGVQLQATPFFEGYTAEENLRLFAALYQVKLD KKQIDAKLAECNLQEARKTLASRLSGGQQKRLAIAVTTIHNPDLIILDEPVSGLDPRA RQEIRRMIQQLAKNKVTVLFSSHDMEEVSRIANRIILMHDGRIVAQGRPDRLLEQYHA ENLDDLYLELTDTVPGKETQQ" gene 559173..559889 /locus_tag="Dhaf_0505" /db_xref="GeneID:7257472" CDS 559173..559889 /locus_tag="Dhaf_0505" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: cth:Cthe_1667 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002457008.1" /db_xref="GI:219666573" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:7257472" /translation="MKTLFSLTFKSASRDPFLLLWSILLPIGGMVGLGMLIKSPEYPQ GIVTGMMAVSILFYAFTTTSFAILAQRRRGVYHLLRVTPLPLWQYVCGLSGAWTLISF LCALLVLLSGVLVFKLNVSLPSFLAMVPIILIATLSYVFFSFFIAGLSRSENNVSILT NLITMPLLLGSSAFYSLNNAPAFIQTINRWNPFQWFIDGLRSALDSAWADYLTSMGLI SLVAIAALVLALKTFRYTDV" gene complement(560018..560260) /locus_tag="Dhaf_0506" /db_xref="GeneID:7257473" CDS complement(560018..560260) /locus_tag="Dhaf_0506" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: efa:EF2304 Cro/CI family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457009.1" /db_xref="GI:219666574" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257473" /translation="MNISQAVIRRIEELCRERHLSINALSNISGITQSTVNDIMSGKT YNAGIGTIKKLCDGLGLSVRDFFDSELFSNLEQEIK" gene 560420..560596 /locus_tag="Dhaf_0507" /db_xref="GeneID:7257474" CDS 560420..560596 /locus_tag="Dhaf_0507" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457010.1" /db_xref="GI:219666575" /db_xref="GeneID:7257474" /translation="MKDALLNEKLENERKKLSKLADEAWQRGVPLIQDKNFMVQNQKV DALVLKYMKEYVNR" gene complement(560781..561248) /locus_tag="Dhaf_0508" /db_xref="GeneID:7257475" CDS complement(560781..561248) /locus_tag="Dhaf_0508" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: ckl:CKL_0411 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002457011.1" /db_xref="GI:219666576" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7257475" /translation="MGKGSQDFILNKIETLMTKLTLGNHEEEEWHTLLSESDLAYRDQ VTLSECHIIDYIGKNRLTNAIGIATNMNITKGGVSKITARLVKKGFIEVHRLEGNRKE IFFTLTNEGKKIYELHDKLHVRVCQRITDLFDSYTESELQAIGRFFSELTDIV" gene 561479..562057 /locus_tag="Dhaf_0509" /db_xref="GeneID:7257476" CDS 561479..562057 /locus_tag="Dhaf_0509" /inference="protein motif:PFAM:PF04199" /note="PFAM: cyclase family protein; KEGG: cbh:CLC_1068 putative cyclase" /codon_start=1 /transl_table=11 /product="cyclase family protein" /protein_id="YP_002457012.1" /db_xref="GI:219666577" /db_xref="InterPro:IPR007325" /db_xref="GeneID:7257476" /translation="MRIDLTYKLTRGMLDKFLEGVQNDGKYQKFGHIGTHFDVMDKSF PLEYCELSGKVFDVSNVENRDIESGDFEMDEVEEKDFVIFHTGMMDKEGYGTEPYFRQ HPQLSYELIRELIKKNVGLIGVDFAGVRRGAEHAPADQLCADNGIFIIENLNNTKQLL EAAGAHSFTMHTYPLNLGGATGLPARVIAELA" gene 562191..563081 /locus_tag="Dhaf_0510" /db_xref="GeneID:7257477" CDS 562191..563081 /locus_tag="Dhaf_0510" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: NEWSINFRUG00000135086" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457013.1" /db_xref="GI:219666578" /db_xref="GeneID:7257477" /translation="MDDLLTERTPLLIATEINTIKQQTGKILLASAIEVGRRLREAKE LLPYGEWTEWLEESVSYTERTAQNLMRIFDAYGSQQIPPAGAVSRKAGALNSGSPTSE DQVQKQGPPPNLNYTQALLLLGVPEEERFQLMEELDLESMTTRELEKAIQERKQAAAE RDQALQENAELQKTVEERDSRVTHLTKERDGLKKKAEELAGAKTKEEAKVEKLSMDLE SKKQSTSAKAIDRMSRNLDAAYHKAKANRIAFLYESMERNFRELRHELKEFAAKEPET YEVYRDKVMDFLTKGMKEKL" gene complement(563206..563385) /locus_tag="Dhaf_0511" /db_xref="GeneID:7257478" CDS complement(563206..563385) /locus_tag="Dhaf_0511" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457014.1" /db_xref="GI:219666579" /db_xref="GeneID:7257478" /translation="MEYEVKLTFLTTAQIQEAISYISKTLLEPEIARRWADSLQKKYL HWPLCLRHEFGSEWR" gene complement(563484..563870) /locus_tag="Dhaf_0512" /db_xref="GeneID:7257479" CDS complement(563484..563870) /locus_tag="Dhaf_0512" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; KEGG: cbl:CLK_0450 LytTr DNA-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and SARP domain protein" /protein_id="YP_002457015.1" /db_xref="GI:219666580" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7257479" /translation="MFSIGVCDDRPLCRQLLEEFILLYEKEKGILFDIHQFGSGEELL EELHKLDMILDLLFLDNSMKKLTGLETAKLIQQSDSMSACSIVFVTADDDHDQFMQIQ PLQVVGKPVTRECIDAILDKVLAEKA" gene 563984..564196 /locus_tag="Dhaf_0513" /db_xref="GeneID:7257480" CDS 563984..564196 /locus_tag="Dhaf_0513" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: ssv:SSU98_0910 Cro/CI family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457016.1" /db_xref="GI:219666581" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257480" /translation="MRLRIRDIREDHDLTQQQVAKYLRCDQSLYSKYERGERDVPLNV MIKLAKFYKTSIDYLVGLTENKRPYH" gene complement(564413..565576) /locus_tag="Dhaf_0514" /db_xref="GeneID:7257481" CDS complement(564413..565576) /locus_tag="Dhaf_0514" /inference="protein motif:PFAM:PF00465" /note="PFAM: iron-containing alcohol dehydrogenase; KEGG: drm:Dred_2277 iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_002457017.1" /db_xref="GI:219666582" /db_xref="InterPro:IPR001670" /db_xref="GeneID:7257481" /translation="MSVVHQVYGYYMPTVNLMGAGAAQEAGKQAKILGGKTALLVTDA FLNQSGLAKQIAEIIEAEGVKVVIYPGAEPNPTDKNVHDGVAVFEKENCNMIVSLGGG SAHDCAKGVGLVAGNGGNIRDFEGVDKSAKPMVPMIAVNTTAGTASEMTRFCIITDTD RHIKMAIVDWHATPNVSINDPLLMIGKPAPLTAATGMDALTHAVEAYVSTAATPITDS AALMAIKLISKYLRRAVANGQDFEARDQMAYAQFLAGMAFNNASLGYVHAMAHQLGGF YNLPHGVCNAILLPRVSRFNLIGNLERFVDIAEALGEEIKNLSARDAAEKALTAMTTL SQDISIPSGLTELGVKEEDLQTMAVNAMKDACSLTNPRLAKLEDIIQIYKNSL" gene 565912..567783 /locus_tag="Dhaf_0515" /db_xref="GeneID:7257482" CDS 565912..567783 /locus_tag="Dhaf_0515" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0788 sigma-54 dependent transcriptional regulator" /codon_start=1 /transl_table=11 /product="GAF modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002457018.1" /db_xref="GI:219666583" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7257482" /translation="MNVHWRKFLKGELIENGIAPMIYRSWQRSVSYNVNHTEISQNMI LTTSQLRELKDSQEDIIRAAESVLPHLGKLLQSANYTVLLGEKKGFILEALGDGPFLT KAQKIHLSPGANWREDIKGTNAIGTALTEDCPITVSGCEHFVQENHFMSCWAAPIHDV QGEIVGFIDISGETGNHQEQIIGIAILGAKLIEQNLRTLDIERQLKFYREGAKLAIDL LKEGFISIDRFGVVTNISPSGASLIGRKRNDIIGKPVAEVFSAPKGWIVNNQALDLHL KNQSGHEIASSWRRVADESGEFLGAFGTVQLTEPQTASPVWVGSSPSSRQIMDRVYKA AAAPSSVLIQGESGTGKEIVARMIHDFSSFREGPFVALNCAALPSSLLESELFGYADG AFTGSRRGGQPGKFELAHQGTIFLDEIGDMPLTAQVALLRVLQEKEVTRIGGTKPHKI NVRIIAATHKDLKSLVEAKTFRLDLYYRLKVITIELSPLRERLEDIRDLVPYFIQKSC TLNQLTCCGIEDNVYPYLYAYSWPGNVRELENCIESMIAMANSHVLTVDDLPLELRQI PDSKRVESPSLLDQQTKQTILAALAQTQGKIAPAARLLGIGRNTLYRKIKEFDISVF" gene 568042..570036 /locus_tag="Dhaf_0516" /db_xref="GeneID:7257483" CDS 568042..570036 /locus_tag="Dhaf_0516" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3625 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457019.1" /db_xref="GI:219666584" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7257483" /translation="MLKSLATKFVFLISILLIIVCGSLGFISNHFSSQAVLKEVNQSL EIVSRETALALKNDLERQLGLLELLANLEAIKDPEVPAEEKVRVLKSEIQRAGYIDLG IADLEGNLINGQGVAGVNIADQDYFKEAIAGKAVASDPKTSKVDDSVITAYAVPVKHG SQIIGALIATRDGYELSRFTQSIELGGSRAVFVINGQGTAIANADLEKVKTMDNIFKN AEKDPGLADFAALQKKMVAGESGVGSYIYGGIKKYTGYAPVEGTTWSLAVTAPQKEVM AGVDNLRKILIICSFAFFLIGIVAAYGFTRNIVGPLNQLVDKIQEVAKGNLAVEDVEV KSRDEVGLVGDALNTMLGSLRDLVNTAGALAEQVAASSQELTTGAEQQAKAASEVAST ITNLALGAENQEKSVDEITASVEEISVTIEQLAVNSNRVAQQTKEAATASSQGQKSAL RAVEQMKNIGEVSVKVQSAVGRLAVSSQEISEINDVISGIAEQTNLLALNAAIEAARA GEQGRGFAVVAEEVRKLAEQSQAAAKQIAQRITLNQSHITDAVTAIELSSEDIQAGIE VVNTAGGAFEDIDTLMSMVSSQVAEISTAIQQLAQGSQSIVEAVRSLESITKENMDTS QTVSAATEEQTASIEEIAASSQNLAAMAESLQVSLSKFTV" sig_peptide 568042..568149 /locus_tag="Dhaf_0516" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.447 at residue 36" gene complement(570211..570501) /locus_tag="Dhaf_0517" /db_xref="GeneID:7257484" CDS complement(570211..570501) /locus_tag="Dhaf_0517" /inference="similar to AA sequence:KEGG:LGAS_0953" /note="KEGG: lga:LGAS_0953 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457020.1" /db_xref="GI:219666585" /db_xref="GeneID:7257484" /translation="MSVKAYLEITMVIKEADRPAAGKIYADYRQPFLRQIKGALTKDL LIRGEDVQVLHGFDSVENAQAYLTSDMFKNDVFLGLKPLWSADPDVKIYTVA" gene complement(570622..571005) /locus_tag="Dhaf_0518" /db_xref="GeneID:7257485" CDS complement(570622..571005) /locus_tag="Dhaf_0518" /inference="protein motif:PFAM:PF01638" /note="PFAM: helix-turn-helix HxlR type; KEGG: lga:LGAS_0952 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, HxlR family" /protein_id="YP_002457021.1" /db_xref="GI:219666586" /db_xref="InterPro:IPR002577" /db_xref="GeneID:7257485" /translation="MKYEPKIEKEIMCPIEYGLDVFGGKWKARILCVLSTNTVIRYNA IRKELGNITDAVLAAMLKELIADELIERTQYNEIPPKVEYALTDRGRSVLPILQNICQ WSRQQTKDELEKKLPPCKTCDQLKK" gene 571154..571633 /locus_tag="Dhaf_0519" /db_xref="GeneID:7257486" CDS 571154..571633 /locus_tag="Dhaf_0519" /inference="similar to AA sequence:KEGG:Cbei_3468" /note="KEGG: cbe:Cbei_3468 flavodoxin" /codon_start=1 /transl_table=11 /product="flavodoxin" /protein_id="YP_002457022.1" /db_xref="GI:219666587" /db_xref="InterPro:IPR001226" /db_xref="GeneID:7257486" /translation="MSKPLIVYYSYSGTTRSLAEDIAIITDGDIRELIPEKPYSFTYN GATKEARTEIERGYCPKLLSGNEPIDDYDYIFIGTPNWFKSFAPPILSFLRSVDLKGK TVIPFCTHGGGGFGQIEINIAQECPDAKLLPGLAVTGDFEEQQVQDWLLCLSCLKQL" gene complement(571889..573088) /locus_tag="Dhaf_0520" /db_xref="GeneID:7257487" CDS complement(571889..573088) /locus_tag="Dhaf_0520" /inference="protein motif:TFAM:TIGR01766" /note="TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: gka:GK1816 transposase" /codon_start=1 /transl_table=11 /product="transposase, IS605 OrfB family" /protein_id="YP_002457023.1" /db_xref="GI:219666588" /db_xref="InterPro:IPR001959" /db_xref="InterPro:IPR010095" /db_xref="GeneID:7257487" /translation="MFLIIRVYKLPFRTSQDNLNRLYACNRISAQIWNQCLDLAKEHG QRTNTWLSRKELHLATKGRYPIHSQSIQAVYEKYLDARENALQARALGYTQIRYPYKE KHHFNTRWKKDGFRIGEKGRIELSLGLWEGKRQKPITVRVAHCPPGQIKEIELVYDRG LKLAMAFEDGISPKANPAQGTAAIDLGEIHTLASVTDQGQGLLITGRKLRSIKRLRNK KLKELQRKMAHCQKGSRQWKKYRRAFHYVLSKSEAQLTDALHKTTREFVRWCLDNAVK DVVIGDVEGIQRHTSPKKKQTQRKRSRRINQNLSQWTFGKTRRYLQYKLAAEGISLKK VDEAYTTQTCPVCGKRRVPSSRTYHCGCGYVQHRDLHGAGNILTQHLYGHYQAIVLKD YKYLRIA" gene 573143..573883 /locus_tag="Dhaf_0521" /db_xref="GeneID:7257488" CDS 573143..573883 /locus_tag="Dhaf_0521" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aoe:Clos_2084 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002457024.1" /db_xref="GI:219666589" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7257488" /translation="MFDDSLRSAIHLNTLEVGVFSPYVHKILIVEDDATIAEAIRKHI QSWGLEARCVEDFRNVLAEFAALDPQLVLLDIALPFYNGYHWCGEIRKVSQVPIMFIS SAGDNMNIVMAMNMGGDDFIAKPFDLNVLTAKIQAILRRTYHFAGQVKILEHRGALLN TADASLTYQGQHIELTKNDYRILQALMENKGRVVSRDTLMQRLWETDSFVDENTLTVN MTRLRKKLEAAGLKDFIITKKGLGYLIE" gene 573980..574975 /locus_tag="Dhaf_0522" /db_xref="GeneID:7257489" CDS 573980..574975 /locus_tag="Dhaf_0522" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; KEGG: aoe:Clos_2083 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457025.1" /db_xref="GI:219666590" /db_xref="InterPro:IPR000585" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7257489" /translation="MDLFFSYLKSQCKIIGAFLGFCLIFAIVFALYELPVEAVGYGAV LCAFLGVILVVLDYRAFYERHKRLEALRREITVTAAGLPQPWGPLEEDYQAVIRVLYE DKLQLTGHMRQRYTDLVEYYTVWAHQIKTPIAAMGLLLQGEQGDTPHSRELREELQRI EHYVEMVLCYLRLEAPATDYLIREYDLDGIIKQAVRKYASQFIRRKIRLEYEPLNCWV LTDEKWLLFVIEQILSNALKYTRSGTIAITLEEPKTLCIRDTGMGIAPEDLPRIFEKG YTGFNGRTDKKASGIGLYLCRRICRNLGHEITAVSAAGRGTEIRLDLQSAELAIE" gene 575149..575913 /locus_tag="Dhaf_0523" /db_xref="GeneID:7257490" CDS 575149..575913 /locus_tag="Dhaf_0523" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_3332 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457026.1" /db_xref="GI:219666591" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257490" /translation="MTILEVNHLEKVYTTRFGSQKIQALASVSFSVEKGEYVAIMGES GSGKTTLLNILAALDKPTGGTVLLDGHNLSKIRESDIAAFRRDNLGFVFQDFNLLDTF SLEDNIFLPLVLAGKSYPEMKARLTPIARKLGIVELLAKYPYEVSGGQKQRAAVARAL ITNPRLILADEPTGALDSKATDELLRLFGEINREGQTLLMVTHSVKAASHAGRVLFIK DGEVFHQIYRGNSSNEALYQKISDTLTLLATGGDRP" gene 575910..577940 /locus_tag="Dhaf_0524" /db_xref="GeneID:7257491" CDS 575910..577940 /locus_tag="Dhaf_0524" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: cpy:Cphy_3331 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002457027.1" /db_xref="GI:219666592" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7257491" /translation="MTGGLYLRLALTAMAKNRKLYLPYILTCMGMVMMFYIISFLAVN PAVGAMPGGGSLQAILTLGRGVMGVFSLIFLFYTNSFLIRKRKREFGLYNILGMGKWN LARILTWESLVIGTVSVAGGLFCGVLFAKVAELSLAHVLKSTIQSGFSVDWPSLLEAA LLFAAIFLLILLNGLRQIHVSKPVELLRSDTVGEKPPKANWALALPGVLILAGAYYLA LSIQQPLAAMLWFFVAVVMVIIGTYLLFIAGSVVFCRLLQKNKRYYYKTSHFVSVSSM VYRMKRNGAGLASICILSTMVLVMLSSTVCLYIGAEDSLRSRYPRQVEVEIHSIDPAY TAALTGAVDKALEKRGLQPENSLSYRYLGVTGYLEGEQVSFKREQGQTLRNEDSANLR QLLIIPLEDYNRLTGAGETLGQNEILLYSSKGDYAYDRLEVAGAGTLKIKKTVSKFVD NGMDGMQVVPSFFIVVPELAYMDAVFEKQREIYGDRASSLYHYYGFDLNLAEEVQIAL REDIAESVSRMQLEDPQFPAASIHSVAQERADFYALYGGLLFLGVLLGIVFILGAVLI MYYKQISEGYEDQARFDIMQKVGMTRREIRKSINSQVLTVFFLPLAAAGVHITFAFPM ISKLMALFSLTNTSLLAAVTVGCYLVFTLFYVLVYVFTSRAYYSIVSGGVEH" gene 577954..578103 /locus_tag="Dhaf_0525" /db_xref="GeneID:7257492" CDS 577954..578103 /locus_tag="Dhaf_0525" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457028.1" /db_xref="GI:219666593" /db_xref="GeneID:7257492" /translation="MRSPCLETPLGRYQSLPGEEERIAQCSEPNERWRTLFILSKNYQ ERIAV" gene 578143..578532 /locus_tag="Dhaf_0526" /db_xref="GeneID:7257493" CDS 578143..578532 /locus_tag="Dhaf_0526" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4001 helix-turn-helix-domain containing protein, AraC type" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002457029.1" /db_xref="GI:219666594" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7257493" /translation="MDYRAKVYDSLDYIEENLDDRIDLEDLAQKAYLSKYYYHRLFHK VTGESVTRYITRRRMAKAAEELVETEQPIIDIALKYQYASQESFTRAFMRIYGLAPGK YRKIHGSRKPTKVINFSSFTKIVDMVA" gene 578552..579133 /gene="clpP" /locus_tag="Dhaf_0527" /db_xref="GeneID:7257494" CDS 578552..579133 /gene="clpP" /locus_tag="Dhaf_0527" /EC_number="3.4.21.92" /inference="protein motif:PRIAM:3.4.21.92" /note="hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease proteolytic subunit" /protein_id="YP_002457030.1" /db_xref="GI:219666595" /db_xref="InterPro:IPR001907" /db_xref="GeneID:7257494" /translation="MSQLVPMVIEQTSRGERSCDIFSRLLNDRVVMLNGMVTNESASL IIAQMLFLESADCDKDIHFYINSPGGSVTDGLAIMDTMNYIKCDVSTISIGQSGSAAS LLLAAGAKGKRFALANSEVLIHQPSISGGLQGQTTDIKIHSDWLTKTKEKLNETYSRL TGQPLEKIQKDMERDYYMTAGQAQDYGLIDKIL" gene 579433..580887 /locus_tag="Dhaf_0528" /db_xref="GeneID:7257495" CDS 579433..580887 /locus_tag="Dhaf_0528" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: cbe:Cbei_0978 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457031.1" /db_xref="GI:219666596" /db_xref="InterPro:IPR001411" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257495" /translation="MNIRKTPLILSLMLAMFLAAVEGTIVTMATPTIARDLQGFEFIS LVFSVYLLTSALSTPAYGKLADLYGRKNILSIGIIIFLAGSFLCGLAQSMVMLIVFRA IQGLGAGAIFTVSFTIIGDVFSLAERAKIQGALSTVWGIASLVGPFFGGFLIDVLSWH WIFFINIPFGLLSVILLQSSLKETFAKKKPSIDYAGTLTLSLAIVVFLSIFLFDRSTS PYPSLWVAGLLLLTFFLLYTFYKIEKKAAEPIIPFAIFTRTTILVNLISFLIYAVLMG VNVYLPIYLQNILGYRPTAAGLAMLPMSVSWLIVSFILGRLLVRYGGKNVILASNAVL LLSTLLLFTLGIDTPLPIILAYGFIMGIGFGGASAALTIIVQDSAEYSQRGAAVGTNS LLRTLGQTIGISVFGTIFNLYITKYFTRQGIEGINPGNLYQPDLSHAALAAKQITLSL NSSMHVLFAAFIIITLLSMILAMTMPGMKKEKQA" sig_peptide 579433..579495 /locus_tag="Dhaf_0528" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.523 at residue 21" gene complement(581022..582743) /locus_tag="Dhaf_0529" /db_xref="GeneID:7257496" CDS complement(581022..582743) /locus_tag="Dhaf_0529" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3045 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457032.1" /db_xref="GI:219666597" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7257496" /translation="MKWVENIKTVYKLGILVIIAFFSLGSVGFTGYYDLKIANDNLQT MYEDRLIPVKIAYDTRSDIRAMNGFLLESMLTADRGKNQTLLDSIQEKGQGVEDKLSQ LENLSLDPQSQELFLKIKASYKQYDQVKNQIVAFAKANLNDKAYNLYETSGGHLSDQL VEDMRALGEYYASLSLQASLDYEASFKHTLWFMGAIVAAALFLLAGSGYIIASSLTKP LGTMVEVCNDFAAGDFRDKQRRSGAGREDEIGLLYQALAAMQNNLRPLIKGISTSAEQ VAASSQELTASSEQSAQAAGLVAASISQIALGAEQQLAAANETAAVVGQMSLNMQEIA AKANQVTFQSSHANEQANQGITTVEKAVAQMTQIEGTVNSSADVVAKLGRRSQEIGEI VDTISGIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAEQSQEAARQIALLIG EIQTDTEQAVAAMNHGTREVKAGTEAVDAAGQSFREIAHLVTQVSGQLQEIATGLQAM DSDGRQIFSSVQSIDQISTTTASETQTVSAATEEQLASMEEIASSSQSLSELAQNLQN EIARFKY" sig_peptide complement(581022..581108) /locus_tag="Dhaf_0529" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.826) with cleavage site probability 0.805 at residue 29" gene complement(583370..584575) /locus_tag="Dhaf_0530" /db_xref="GeneID:7257497" CDS complement(583370..584575) /locus_tag="Dhaf_0530" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lme:LEUM_0827 permease of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457033.1" /db_xref="GI:219666598" /db_xref="InterPro:IPR001991" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257497" /translation="MNSQPNKKLGPIVAIMSMFIFIPDFFIISSILSKISESYPHISM AGITYLLTSVSLAQMAGALITGVVLGRRISFRGLSLIAIAIYVIFGGMPFFFSMSFGA LMFTRVAFGLGLGCWLPICQSYIAKLYDDEAKRADILGIGMALFNVGLILGIMAGGIL GAFNWRYTFAFYLLGSISFVLVAIFMKEPVNEAEGKKEKIRIPKEAFGIMGFFILAQL IFGVFSSYISYVVAEIHGTPILASTMMTAFSIACIVIALFFGPLYRLVKQYILLFASA LVVVSYALLYLGGTSASIPLLFLGAVCCGLATNMCSTGVAMMLSITVPQASVAAAMSA SIICMNVGTFLTSPFLQIISIAAGEGAPAYTAYLGALLLAVVLLIIAVPFSTKLRRAA KAKETMPAA" gene 584905..587004 /locus_tag="Dhaf_0531" /db_xref="GeneID:7257498" CDS 584905..587004 /locus_tag="Dhaf_0531" /inference="protein motif:PFAM:PF00158" /note="PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tte:TTE0687 putative regulator of acetoin metabolism" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002457034.1" /db_xref="GI:219666599" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7257498" /translation="MQSKSFNLKKFDDVLNQMIVPNLQQAPLWDVDNRPMTKDRWETT VRCKKSLLDGDLDAVMTSEYPRAEIKKVWIESYKLGLRPSDKTHDPEEDMLRNENLMP FAQIVFPTIHDLGDFNKIPIFMNIHDRQGTFFFQKTESGIESYFVQEFLFSNEPREIR KSGLTSHLLCKRSMCPAVLLGPEHYLESDLNINSASAPIFDVSGNLDAIITLAYRETG IPWEKDTAEKVSTILTQVLLLAHRIQTSIRPPAERDIPVGREEIPCPDLINDPPIIVV DPAGTIIGINPAGRRFFPTLPTDGQAGNIRRYLPANSKLLPLIQTQAQTIITEVICSP PATGLYSVQIRPFEAAGRSCSILLFSNAKESGQATAPGKCSPAADCFNSLIGESHAFR NAIDQAVCFANSNGNILLTGESGTGKELFAKAIHNCQDKKGPFVAINCAAIPRELISS ELFGYASGSFTGGDRKGRKGKIEMADGGTLFLDEIGDMPYELQAVLLRVLQDKQVTRI GDHVSHQIEFNLITATNRNLKDLMESGQFRPDLFYRISMFPINIPPLRDRKGDIKLLV SYFMNSCGQNNPESLSISNEALQILEEYDWPGNVRQLENVILYMMTIAKSRNCKVLLP EHIPNIVIQSSPPSLAPGEAPDTEKADAYGTIHHVEKVMLEKMLKEFNHDIPLVAEIL GVSKSTVYRKIKRYNLA" gene complement(587019..587879) /locus_tag="Dhaf_0532" /db_xref="GeneID:7257499" CDS complement(587019..587879) /locus_tag="Dhaf_0532" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_3486 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457035.1" /db_xref="GI:219666600" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7257499" /translation="MMNLAVQSDEELLAGYAAILSRLKELIKEDLMVLITDKTHILYF YPGYKLNASNMQLVGLELPADDDLGRCVRTGESNTELRPKEAFGVPFLAMTAPIHNSR GEIIGCVSIGRSMEKEANLEEASQSLAASLQEVNAGLQEIASGSQILSSKINSVVQSA NDSAVKIKEVNQVIRAIADVSAHSNLLGLNAAIEAARAGEQGKGFAVVAEEMRTLARQ SKDSAKMVTEILTQMKDSIESIIWEVDQIGGIAGNQAASTQEITAALEEISENSQTLV EHAKIKIENR" gene complement(588069..588203) /locus_tag="Dhaf_0533" /db_xref="GeneID:7257500" CDS complement(588069..588203) /locus_tag="Dhaf_0533" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457036.1" /db_xref="GI:219666601" /db_xref="GeneID:7257500" /translation="MAEEKYSITELFAMLQADDSWEKDPEQRAQWIERFKMSLNVWYC" gene complement(588221..589402) /locus_tag="Dhaf_0534" /db_xref="GeneID:7257501" CDS complement(588221..589402) /locus_tag="Dhaf_0534" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mta:Moth_1317 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457037.1" /db_xref="GI:219666602" /db_xref="InterPro:IPR002048" /db_xref="GeneID:7257501" /translation="MASLSLVQETQQNLWDATNFREPKKVPVGMEFTYWPFSYAGVTY KEVAHDPQLTAEKYLQFLDDIHLDYTWGMASLPNPYKAFQALGSNSFFLANDQTTVAH NQTADVYMEDDEYDEFSKDPYYFINEILLKRKLPKLDQGRKEAAYGALRQSMLEFRHF DLTNELILQGLAERAVYTLVNAPIVFNSPLKLLFDKVRGMKNTLIDLRRRPDKVRAAC AQLLAADKAAIPLKPEDLAKMPGLKVGLTGYHVECFLSGKQFDEFFMKPFLEVCEPYM QAGVKFFLKGEGKFLNTIERYRQTPKGSMIIMLEEDDPFEVHKLVGDWCTLATGISAS LLKYGTKQQCIDYVKKCYDTFAPGGGFIFMQDRPLLSANDANPENIIAVYEFANEYGK K" gene complement(589510..590736) /locus_tag="Dhaf_0535" /db_xref="GeneID:7257502" CDS complement(589510..590736) /locus_tag="Dhaf_0535" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lme:LEUM_0827 permease of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457038.1" /db_xref="GI:219666603" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257502" /translation="MNEMNRVTRYGIVFAIMFMNFFIPTHGIVATTFAAMAESYPDVS ASALTYVTAVVNVAQVVASIGAGVLIGRKLKYKTAGIISLLLFTVAGGFPFLMGEGLS FGALLASRCLFGLGLGAFSPIVNSTIAYLFDKENTRAFMMGAKDVFFSLGATIGNIIA GILCLISWQTTYVFYLFGIIPLVFFVIFYKEPEFVQETKKEKIKIPKTAFYYLFLLLV VMLLTQFCWNYIAFILTDMGYSSAVIGTIVTCFTVGAILGGIAYGFCYRFFKNYILFV AMIMVSLSFIIIYGASSSVSTSLLFVFGIGFFLSGFASVMFTAGIPMSLSLTVPASAI AAAMGLFFAFQNFGSFLASPVGQLFFSIVGQDAPINTIFIFGLVVALIFTVIVFITST RDAKLAKAQKQEMNSV" sig_peptide complement(589510..589623) /locus_tag="Dhaf_0535" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.681) with cleavage site probability 0.633 at residue 38" gene complement(590780..591595) /locus_tag="Dhaf_0536" /db_xref="GeneID:7257503" CDS complement(590780..591595) /locus_tag="Dhaf_0536" /inference="similar to AA sequence:KEGG:Bphy_3525" /note="KEGG: bph:Bphy_3525 pyrogallol hydroxytransferase" /codon_start=1 /transl_table=11 /product="pyrogallol hydroxytransferase" /protein_id="YP_002457039.1" /db_xref="GI:219666604" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7257503" /translation="MKVFIVDMERCNGCYGCQIACKDEHVGNAWPPYALPQPNTGQFW MRVKEKDHGQVPKVTVEYTPWPCMHCDKPACLEAVPEAGYKREDGLVILDPEKVKGKK EIVEACPYQAIFWNEELAIAQKCTGCAHLVDAGKLPHCVDLCATGGLRFGEEEEFAQE IARAETMLPASGCRPRVYYLNLPKLFLAGEVWDPQANEIIEGATVSLTFPGGETLTTE TDDFGDFWFRKLEAGMYFLSIEAEGYAPVEKTGIRLNESLNLGDFPLKKPGAL" gene complement(591608..594181) /locus_tag="Dhaf_0537" /db_xref="GeneID:7257504" CDS complement(591608..594181) /locus_tag="Dhaf_0537" /EC_number="1.97.1.2" /inference="protein motif:PRIAM:1.97.1.2" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bac:BamMC406_5286 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="Pyrogallol hydroxytransferase" /protein_id="YP_002457040.1" /db_xref="GI:219666605" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7257504" /translation="MSDIKTTIKTLGFCGPCTASDPAEIDVKDGKILRTRPFRYTDHA PKEGLNAWTIKARGKEFRAKEKSEISPFALAYKQRVYSPNRILYPLKRVDFDPNGERN IQNRGKSKYVRISWDEATDIIAREVLRIKEKYGMNSIFVQSDGHHAVKTIHGPRGTQG ALLDILGGYTLQARNPDSWEGWYWGAKHIWGQDPVGQGNQNNLFLDVARNSDMVLFWG CDVVTTPWGWGGHFPSRYCFFLRDIGVRQIYICPDVNYGCAVHGNKWIPVLPNTDSAL QLAIAHTWIKEDLYDQEYIATHAVGFGTFVNQVMGRDDGIEKTPEWAETVCGVPARTI KALARSWAKQNTSIAHCNGGSFIRSTYSHEPARLEVALLGMQALGKPGRNQLKMMEYQ LFSLDSQMPAPRAQFIPDLVSILFPYAADTRESLVTETLVPEALAGDYSRENPLTWYG CTCAGVPVEDQFRKIEYPAPGCERIHMVWTDSPKWTSSWNGGFKFMDALHSEHIECVV AQHIWMEDDCLLADIILPVNTKFEEYDINCDITSGNYNMLLIEEQSIPPLGESKSDYE CAMAVAEKLGVLQELTGGESIADKVKKGFMNSGVQDYISFEEFKEQKCYVVPAAEDWE EDVAGFYAFYSDPENFPLTTPSGKLEYYSQRLAESFPEDTERGPYPKWIEKGETHPDE RLSTPRSESYPFLLVSNHPHWRLHSQMDDCAWFREIKTCKVKGPDGYAYEPVWINPVD AQKLNIKSGDIVKLFNEGGWVLGGAYVTERIRPQVVLQDHGARIDPIVLGESDRGGSN NLIAPKKITSKNCAGEVTSGYLVGIEKVDVFELAQRYPEAFSRKYDPETGVIVDAWLA E" gene complement(594195..594533) /locus_tag="Dhaf_0538" /db_xref="GeneID:7257505" CDS complement(594195..594533) /locus_tag="Dhaf_0538" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002457041.1" /db_xref="GI:219666606" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7257505" /translation="MAQYGLLIDNEYCTGCHSCEVACKNEKMLPLGQWGIKLLELGPW QLMDDKHWEHRYIPVPTQYCDLCEDRVAGGGQPSCVLHCLASAMEFGPLEELTAKMAA KGRQASIFIP" gene complement(594564..595220) /locus_tag="Dhaf_0539" /db_xref="GeneID:7257506" CDS complement(594564..595220) /locus_tag="Dhaf_0539" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2086 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002457042.1" /db_xref="GI:219666607" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7257506" /translation="MIDLQKFTQSIGDLDENAVIEALNEFVAANPTEEEAQALVIACQ NGMAIVGDLYEKNEYYVGDLIFSGEILSSALDILKPVLGTGNRAKAGSIVLGTVEGDL HDIGKNIFKGMAEAAGFEVYDLGIDQSPSAFVKKVSEVKPAIVGMSGVLTLALDSMKH VVDALEKAGLRKDLKVIIGGNPVTEIACRHIGADAFTVNAAEGVKICQGWTAQQPGDH" gene complement(595257..596072) /locus_tag="Dhaf_0540" /db_xref="GeneID:7257507" CDS complement(595257..596072) /locus_tag="Dhaf_0540" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002457043.1" /db_xref="GI:219666608" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7257507" /translation="MIIIGEKINGTIPNVKQAIETKNEGFIHDLAMKQGQAGAAYIDV CAGTAPELEAETLAWLIDIVQQATDTPIAIDSPNPKAIEAVFNCVKHPGLINSVSLEG DKCDVIFPLIKGTPWQTVALTCDNAGIPKDVQSRVKIAGAIVEKAQAYAITPDKIHID PLVTALSADNQSLLNFAAAARKVKELYPDIKVTSGLSNISFGMPLRKIMNQNFLALAM FAGMNSAILDPLNRDIIATILAVEALLGQDRHCRNYANAYRQNKIGPVKAAAD" gene complement(596095..598362) /locus_tag="Dhaf_0541" /db_xref="GeneID:7257508" CDS complement(596095..598362) /locus_tag="Dhaf_0541" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457044.1" /db_xref="GI:219666609" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7257508" /translation="MATLHWNEKSAPAVTELADGTKVYRTNAWSPPGCHGVGCGLRIF VKDGELQKVEGDPDHPITKGRLCVRCLTMKEYFYHPDRIKYPMKRVGQRGENKWQRIT WDEAYDIIVENYQACAEKWGVNSVSVWSGTGREACRYQTPLCLDVFGSKTIVHPNSGW SCLVPRMAVMSWILGSAYVEYDYANGLPLRYDDPRWEPPKYMLVWGRDPLRCNADGLW GHSMIELMKRGTKLISVDPRANWLATRAEYHLQLRPGTDAALALALLHAVIKTGKYDK EFVEKWCYGFEELAERANQYNPEWAEGITGVAAADIYAVAECLVQKPSSACIGLAIDQ NPNCIQIGHALYSIFAITGNLDIPGGLFMGQPTFFAGDVNNDPNQKSEEAEAEFEGIG YKEFPAIPMIVNTTHPDCTLDTLETGRPYPIKFAFIQSTNFLASSIVVQPKRWYEAMR KLDFIVASDIFMNPTIAGLADLVLPISTSLEHDGIVMNSMASQPGQYGALVKIIEDFG ETKSDLEILLDLHHRLHPDSQDPRWKDTDSYLSHDMAPMPGVDITFPELKERVIAQYE LEYRKYEKGLLRPDGQPGVNTPTGMIELYSTMLEALDEDPLPYYMEPKFSAVSRPDIA GDYPMIMTTGARRFTSFHSEHRQIRTLREIHPWPTAEINPKTAAAKGITEGSWIYVEN PWSKAKLYAHLTPIVKENVVSIDHGWWYPERGPEKMFDVWECNINNLIPNKENGKLGF GTHFKSMPCTIYRAD" gene 598877..600433 /locus_tag="Dhaf_0542" /db_xref="GeneID:7257509" CDS 598877..600433 /locus_tag="Dhaf_0542" /inference="similar to AA sequence:KEGG:PTH_1120" /note="KEGG: pth:PTH_1120 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457045.1" /db_xref="GI:219666610" /db_xref="GeneID:7257509" /translation="MEKKRVLIGSPIRQSPHVLKEFLDSLRGLEQGELELNYIFVDDN ESEESSRLLVNFEEEGLVTLIKGDKGEKRPGDYVCDDITHHWRDHLIQKVAGYKNLMI EKALEWGYDYLFLVDSDLVLHPATLRHLVSTGKEIISEIFWTAWYPGSREMPNVWLYD HYDMSPRQRGEKLSQKDLDIRAQGFIDQLRIPGVYEVGGLGACTLLSRQALQAGISFS EIKNLTLWGEDRHFCVRANALGLSLWVDTHYPAYHIYRESSMAGVEEFKAVCRGEKPP GRGSCTVQEQHKPKLTLSMVMKNEATKDLARVLREHRHYIDAAVIIDDGSTDNSVELC LSILQGIPLQIIENSASKFANEVELRKQQWRATAATNPEWILNLDADEVFENRFRQEV RMLIEDPDTDVWYFRLYDFWDESHYREDEYWNAHSTYRPFLLRYRPGFVAEWNEVAQH CGRFPKSIKTLPYKLSSLRLKHLGWADPKHRMAKYQRYMELDPEARYGWKEQYESILD PNPRLVKWEE" gene 600735..600950 /locus_tag="Dhaf_0543" /db_xref="GeneID:7257510" CDS 600735..600950 /locus_tag="Dhaf_0543" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: ckl:CKL_1930 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457046.1" /db_xref="GI:219666611" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257510" /translation="MDNKVEQLRRERGLNQEEFAKAIRVSRQTVSSIENGKYNPSLEL AFAIADFFEKSIEEIFIYERRKENEKK" gene 600937..601380 /locus_tag="Dhaf_0544" /db_xref="GeneID:7257511" CDS 600937..601380 /locus_tag="Dhaf_0544" /inference="similar to AA sequence:KEGG:CKL_1929" /note="KEGG: ckl:CKL_1929 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457047.1" /db_xref="GI:219666612" /db_xref="GeneID:7257511" /translation="MKKSNLWAGMLFILGGVVCLAIALMLDTRLDSLLFGFAGGLIAP GAIMIIKYFYWTAPQNRSRYAERLDNERIELGDERKERLRDKSGRYAYLLGLPVLSAS VVLFAILGKLEVITNAKLIILYLAGYFVFQYVAGVVIFRHLNHKY" sig_peptide 600937..601002 /locus_tag="Dhaf_0544" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.441 at residue 22" gene 601500..603143 /locus_tag="Dhaf_0545" /db_xref="GeneID:7257512" CDS 601500..603143 /locus_tag="Dhaf_0545" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002457048.1" /db_xref="GI:219666613" /db_xref="GeneID:7257512" /translation="MSRRKVSGLNHMPEAVTLGRFLEQQKLEPLREDPLFQEEMLALA IQTLSFSSRESGLSEGGNNRLPGKSLSLPLAGSHVHLEDQGEYLRLRIAEGEEKTPRT QGSFLCAFSRTWEDFCTQAADWMEREKGRILGACEAFTRNLTEQITQGYGLSILAELK KTLGVDLFLLDKHFKVLSWEGGGRFPFHPVSFVTPKLSHFKSMDLLLETPLGIGKWND AQYKELPLSWYPLAGHQGVLGYIGLGIEQGELNPVGRLFLYKAAVLLYFELAKAQSVE DTERQHYRDFLFDLLYNNFDSLEVVQSRGKLWGMDLTKPHLVVVGEIPGYDPDSMDQL AFQELLDTVSTALRSQPRTIFLERNDQIVLLYPLEGMIPLSQWEATAKKLLSPLLILL EGLEEERSMMFGVGNLYPSARFIHRSFQEAKSALELGQLFNLQERVILFQDLGVMRLL LNLEQQELEDFRNEVLGPLLKFDQENNLHLEETLLAYLASDGDLNLAGDRLFLHPNTL RYRLKKAAEVLDRDLNSLETRMNLFIALKIGRLKSLWQE" gene 603309..603968 /locus_tag="Dhaf_0546" /db_xref="GeneID:7257513" CDS 603309..603968 /locus_tag="Dhaf_0546" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002457049.1" /db_xref="GI:219666614" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7257513" /translation="MAELVCSPEGDAQTLHLQARIATLMALSGVFSAGGENLQRTLTT LSEAYAQWLEEKEGVLAEEEEILNQLLQAQKGKEKKTLGYEFNRLFVGPQSPTVPPYE SVYRHGERLVMQKSTLDVRRWYRSEGLSLAGASKEPDDYIATELEFAAYLLAKALAGF QKNQPGEAELYLKNYNAFYQEHLRIWLPRFVTGLFTQAREPLFHVLGEMILKTVRAVP S" gene 604012..606210 /locus_tag="Dhaf_0547" /db_xref="GeneID:7257514" CDS 604012..606210 /locus_tag="Dhaf_0547" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457050.1" /db_xref="GI:219666615" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7257514" /translation="MKITRRQFIGGTAAVTAGAGLFGFNMLAESNFARAAGAEAGVKT FRNVCPRNCYDTCAQISYVEDGVLKKVEGDPKSTYTNGKLCLKGYNYTRRVYSPDRIK YPMKQTPRGSGNWERISWDEAMNTIAGKILDLKKRYGSTLPICMNKYSGNFGITHYGI EGTMSSIGYTTRAIGTPCWPAGIDSQTYDFGTIVNNDPEDFVNANYIILWGSNCAWTG VHSLPFITKAQERGAKVVAIDPVLTSTASKADLYIQINTSTDGALALGMARYILDHDL VDWDYVQANSIGFAEWADYVKKNITLDWAAEKTGIPKEIIIQLAHEYATAKPASIWVG YGMQRHTNGGQNVRIIDALGLMTGNIGKSGGGINYAHLETWGFNYHAMVMPAPEGSVG MAGPDGTHTDRSVNMNNFAADVQALTDPPVKMLWIAARNPVSQDPDTHDIIKMFNSME LVVTVDSFFNKTVEQSDIVLPATTHFEDWDVMASYWHHWVGVNQRAIDPMYESKSDVE IAMALSKAMNALEPGSCTYPTEGDPEEWTAREFNDGVYNMLGITDYKELLAGPRKAKF SPAAWADGKFRTPSGKFEVHSERAAQNGLPAIPIWVEEMKAPAQYPIRFMTPHPQHGI HSQFQNLDWMMAANPEPLLEIHPELAARHGIAEGDQVRVYNDLGEVTIKAHLTRTTSP DVIVSYEAWYKDSPFNVNYTVKAIPADMGKLATGMDGIAFHDNFVAIEKA" sig_peptide 604012..604119 /locus_tag="Dhaf_0547" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.816 at residue 36" gene 606225..606794 /locus_tag="Dhaf_0548" /db_xref="GeneID:7257515" CDS 606225..606794 /locus_tag="Dhaf_0548" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sth:STH2055 oxidoreductase anaerobic dimethyl sulfoxide reductase subunit B" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457051.1" /db_xref="GI:219666616" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257515" /translation="MSKQLGFLHNSEKCIGCRGCEMACKNEYQSDASVRWRQVYQLRE KDFSLPTRMFISVACNHCQNPECLRVCPVKAYTKREDGIVIHDQERCIGCKLCTMACP YDRPQFNTVVKKVEKCNLCYERLDQGQQPACVAACVPEALQLVEMTDELDLKTGVLTT LPGMPDPAVTHPSIRFIGPKQGKQIRRDV" gene 606794..607648 /locus_tag="Dhaf_0549" /db_xref="GeneID:7257516" CDS 606794..607648 /locus_tag="Dhaf_0549" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002457052.1" /db_xref="GI:219666617" /db_xref="GeneID:7257516" /translation="MGHWEWPLVLFTVLGQTSVGIIFCLWLLERKRGKQAVQAGPEYQ KFMQSSVLVSGVLLAVAMIASLFHLGHPLAAYRALTHLGTSWLSREILLFVFTFGAWA YLALLSRRPGGKLTGVLALTSALGFLGIISSALIYTLPRVPAWNNLGPVIFFLMTGMI LGTLVTAVLGRKALAGGEMKQMLGIALGSVMGSAILYLLYFSGLEVTPEGAATAQALL SSPVFWLRAAVGWILPILLILNTISKQDNPQSQLIVLALTCGVVGELLGRGLFYVSAV GMQITALM" gene 607916..609958 /locus_tag="Dhaf_0550" /db_xref="GeneID:7257517" CDS 607916..609958 /locus_tag="Dhaf_0550" /EC_number="1.7.99.4" /inference="protein motif:PRIAM:1.7.99.4" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit" /codon_start=1 /transl_table=11 /product="Nitrate reductase" /protein_id="YP_002457053.1" /db_xref="GI:219666618" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7257517" /translation="MDTLHHHICPRNCYDTCSIISTTRHGRLASIEGNPAHSYTRGKL CPKVMDEIHKVYSPQRIRYPLRQRKRFSGQWERITWDEALETISRKILDLKDKYGTTL PLAHNKYSGNFGILHNALEAFLTGLGPTTRAVGSPCWSAGVEAQVFDFGAFFCSDPLD MEKAKLIWIWGANPAWNAAHQMPIIFRAMDQGAKVICLDTHFSATAARVHQFVRVNPG TDGLLALGLAKIIVDHQLTDPELPDYSLGYNEFIDYLKAEIDLRKCSAVTGVSLETMK ELALEYGAVKPACIWAGFGLQRYTNGGQNLRAIDALGALTGNIGRPGGGVQYGHFETW RFAGPLAHSQCGHAQDRELDINQFPQLALAADPPVKMLWIASRNPFQQDGNHAGWQKL SETLELIVVSDLFHTRSSAAADLFLPVTTHYEHWDLHASYWHYYIGINEPAVEPVGEA RSDLQIAWDLSKRLNQSSPGSSAFPTEGSEKEWVLGAIGPEMLAILGIDSAEELLKGP RRVNYPGTAWQGRQFQTPSGKYEFYAEKAQEWGLPPLPVYRPPRQAPPETPLRLLTPH HLSGLNSQVYLYSEESDSLLKARLHPKTAEGYGLNRGDKAILWNRGGSFPVIIEQDLG IGEGVIVIYQENRPNLKSPHLNLLNLGELTDMGKYATGAYGLALNETFVGIRKTTS" gene 609970..610527 /locus_tag="Dhaf_0551" /db_xref="GeneID:7257518" CDS 609970..610527 /locus_tag="Dhaf_0551" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sth:STH2055 oxidoreductase anaerobic dimethyl sulfoxide reductase subunit B" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457054.1" /db_xref="GI:219666619" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257518" /translation="MAKQLGFFLDVNRCLGCGACIKACANHNRLPPSLTWRKLRQVED VDYDRGQISRFFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVAS CPFGAPQINPQTGKAGKCQLCHERLDKGNAPYCVQACVTGALQLREIQGNPTDRILRL TAPLPTLRLTKPSTFYYPPRGTKIL" gene complement(610717..612258) /locus_tag="Dhaf_0552" /db_xref="GeneID:7257519" CDS complement(610717..612258) /locus_tag="Dhaf_0552" /inference="protein motif:COG:COG3835" /note="KEGG: nth:Nther_1023 putative transcriptional regulator, PucR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002457055.1" /db_xref="GI:219666620" /db_xref="GeneID:7257519" /translation="MNINMHILLDELRELNPKSYLHDSIDLTIRSMAGFDKTSDGFLK DTLYLATTTALAAWEGKLQDVNLIVTGAFDLDFAQRNRCNIICFDDSLTPVEIAGHIF RIQKKYDDWNNALLSALIAKKPTKHLFAIALEEIHNPMMLLGPLNTLILAAGDIPASC TDTLWRELLNEGYLSYEHPLYSELLKIAEKKPSEQPFIVKFPMHDYTYLIANLFQSGK RCGALHLLEVNQPFSLGQITLVAHFRSILEQAIKTIPDLQILSSNANGFVYQLLNHIY VKESIIINSLQAKGWKVFDEFLCLNLMQNKMQRDDTLLNIIVQELSRVFPAAIILNYK DGVVMILRHADFPFDREDLRARLASFVRKFFLTIGVSSVFYDFKNLKRHYDECSLAIK YGLAQDPTLALHFFDDHVFRHLSRFIFVENGKNQFIHTKVELLHHYDLKNNTELVKTL LTYFQFGQSKSLAAEKMHLHRNTLTYRLNSINNLVGIDCSSRNLQEEEIFHIMLSCKF LEYIP" gene 612545..613111 /locus_tag="Dhaf_0553" /db_xref="GeneID:7257520" CDS 612545..613111 /locus_tag="Dhaf_0553" /EC_number="3.5.4.16" /inference="protein motif:PRIAM:3.5.4.16" /note="PFAM: GTP cyclohydrolase I; KEGG: pth:PTH_1399 GTP cyclohydrolase I" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="YP_002457056.1" /db_xref="GI:219666621" /db_xref="InterPro:IPR001474" /db_xref="GeneID:7257520" /translation="MQLIEQAKIREAVLMILEAIGEDPEREGLKDTPDRVARMYAEIF SGLAEDAGVYLECVFTEEHEEMIVVKDIPFYSTCEHHLVPFIGKAHVAYIPAGGKVTG LSKLARVVESIARRPQLQERLTREIADVIMKKLNPQGVAVVVEAEHLCMSMRGIKKPG SKTVTSAVRGLFRKSAKTRAEFLSLIKT" gene 613152..614057 /locus_tag="Dhaf_0554" /db_xref="GeneID:7257521" CDS 613152..614057 /locus_tag="Dhaf_0554" /inference="protein motif:PFAM:PF01226" /note="PFAM: formate/nitrite transporter; KEGG: tde:TDE0999 formate/nitrite transporter" /codon_start=1 /transl_table=11 /product="formate/nitrite transporter" /protein_id="YP_002457057.1" /db_xref="GI:219666622" /db_xref="InterPro:IPR000292" /db_xref="GeneID:7257521" /translation="MANLYLSPKEITEEYVAIGQKKASTPAYKLFILGILAGALIAFA SEGSNVAIHTLDSVGLGKLLAGIIFGTGLMMVVITGAELFTGNTLIVISCIEKKVRWF DMLRNWVIVYLGNFIGALTIVMFIIYSGQLDFSGGLLGGFTIKTAVYKTGLTFNQALL MGIMCNWLVCLAVWMAAAAKDIAGKVLAIFFPIMLFITSGFEHSIANMYYIPAGIIAK MNPVWVEQAEALGVTAAKLAHLNWESFIVNNLIPVTLGNIIGGSLFVGVFYWLGTLYK GRPAAAEKTDRLMPGKLDNAWAKSK" gene 614091..615767 /locus_tag="Dhaf_0555" /db_xref="GeneID:7257522" CDS 614091..615767 /locus_tag="Dhaf_0555" /EC_number="6.3.4.3" /inference="protein motif:PRIAM:6.3.4.3" /note="catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate" /codon_start=1 /transl_table=11 /product="formate--tetrahydrofolate ligase" /protein_id="YP_002457058.1" /db_xref="GI:219666623" /db_xref="InterPro:IPR000559" /db_xref="GeneID:7257522" /translation="MAFKSDIEIAQESTMLPVAEIAEKLNIAEEYVESYGKYKAKIDY NLLKERGDTPDGKLILVTAINPTPAGEGKTTTTVGLGDALTHLGKKVVIALREPSLGP VFGVKGGAAGGGYAQVVPMEDINLHFTGDLHAIGAANNLIAALLDNHIYQGNALDIDV RRITWKRCMDMNDRQLRYINDGLGGKANGMPREDGFDITVASEIMAILCLSSDLDDLK QRVERIIVGYNRKGEPVTAGQLKAQGAVAALLKDALKPNLVQTLEHTPSFIHGGPFAN IAHGCNSVMATKMALKLGDYVVTEAGFGADLGAEKFLDIKCRLSGLEPDAVVIVATVR ALKSHGGVAKADLNQENLAALKEGLPNLLKHVENITVNFGLPAVVAINRFPTDTLAEV QLVEEECKKLGVNVALSEVWEKGGAGGVELAEEVLKLMDSPKNFTFAYDIDLGLKEKI TAIATKIYGADGVDFIGSSTKDIEGIESIGYRNIPVCMAKTQYSLSDDQKKLGRPTGF RISIRSVKVSAGAGFAVALTGDIMTMPGLPKVPAAESIDVDNTGRISGLF" gene 616172..616810 /locus_tag="Dhaf_0556" /db_xref="GeneID:7257523" CDS 616172..616810 /locus_tag="Dhaf_0556" /inference="protein motif:PFAM:PF04961" /note="PFAM: Formiminotransferase-cyclodeaminase; KEGG: cbo:CBO1171 methenyltetrahydrofolate cyclohydrolase" /codon_start=1 /transl_table=11 /product="Formiminotransferase-cyclodeaminase" /protein_id="YP_002457059.1" /db_xref="GI:219666624" /db_xref="InterPro:IPR007044" /db_xref="GeneID:7257523" /translation="MLESSAKDFVAALSSKEPIPGGGGASAYVGSMGMALGVMVGNLT VGKKKYADVEAEVKILIEKSEKVIARFQSLVAEDAAAFYPLSQAYGMPKNTEEEIQRK EETLQKALVNATLVPLEIARCCAEGIDLQEEFAQKGTRIAISDVGVGVAFLKAALEGA KLNVLINTQIMKDQEFKHRIETELADLCTVYTAKADRIFAEVQNSITGGKSS" gene 616807..617652 /locus_tag="Dhaf_0557" /db_xref="GeneID:7257524" CDS 616807..617652 /locus_tag="Dhaf_0557" /EC_number="1.5.1.5" /inference="protein motif:PRIAM:1.5.1.5" /note="PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cdf:CD0720 FolD bifunctional protein" /codon_start=1 /transl_table=11 /product="Methylenetetrahydrofolate dehydrogenase (NADP(+))" /protein_id="YP_002457060.1" /db_xref="GI:219666625" /db_xref="InterPro:IPR000672" /db_xref="GeneID:7257524" /translation="MTQILNAKPVVQAMKENLRQEVAALQAEGKAPTLGIIRVGSRPD DVYYENNIIKNCETVGIATKTYPLDLNISMEEFTAVMTQVNDDPSVHGIMLFRPLPPQ LDEEVIKHLISADKDIDCMSPLNLEKVFEGDMSGLLPCTPAAVMAILRHYDIELKGAN AVVMGRSLVVGKPLSMMLLQDNATVTICHSRTRNLPEVAKNADIVIAAMGRARMIDDN YVAENSIVIDVGINDAGDGKICGDVDYDAVVDKVKGITPVPGGVGSVTTTILLNNLVR ACKSQ" gene 617831..618832 /locus_tag="Dhaf_0558" /db_xref="GeneID:7257525" CDS 617831..618832 /locus_tag="Dhaf_0558" /inference="protein motif:SMART:SM00382" /note="SMART: AAA ATPase; KEGG: cau:Caur_2811 ATPase" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_002457061.1" /db_xref="GI:219666626" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7257525" /translation="MEKIDKSQERTEEKGGEPMDSDELRQGLKEQGYIADDNTLMAMQ CSLLLNKPLLIEGPAGAGKTELAKAWSRYWQRPLIRLQCYEGIDEAKALYEWNYQKQL LYIQSQNTRLQGIQDKPFQGAYPQDSDQQNPEDNAWAANSKTIYSEEFLLSRPLLKAI RSPQPVVLLIDEVDKSDEEFESFLLEILSDWQVSIPETGTISAASIPSVLLTSNNTRN LSHALRRRCLYLYLDYPGEQRELDILRLNFPELQETLGRQAVILIRKIRLERLKKHPS ISEVLDWVNILNQMGARELSPPLALNTLGLLLKYKEDQEKIREKINQKDWFDGIFTA" gene 618813..620174 /locus_tag="Dhaf_0559" /db_xref="GeneID:7257526" CDS 618813..620174 /locus_tag="Dhaf_0559" /inference="protein motif:PFAM:PF05762" /note="PFAM: VWA containing CoxE family protein; KEGG: mxa:MXAN_3786 hypothetical protein" /codon_start=1 /transl_table=11 /product="VWA containing CoxE family protein" /protein_id="YP_002457062.1" /db_xref="GI:219666627" /db_xref="InterPro:IPR008912" /db_xref="GeneID:7257526" /translation="MEYLLLDMARLLRRAGIHVGTPELEDCLQGLNHLGTKISKYAFY QLVNTTMIKTPWGAEFVLWLTELYYGPDPELSNDHLQLLSRRQVTEVTGEGLGSSGQG APVELLAEAVLKKNIGLIYAVLQGLNIRLEPHWEDEERALEFFRERSGWGEVRRRVEE SRRRGELGEEEYAQAWETLSEWNRLLQDQIELQMIQTMSGQVLLDELKKHNPRTIDFL AGEERQIEPMFREIQKLGRRLAVRPGRRHQVAGKGTIALSRTVRRALQTGGIPLAPVR VRRKPAKPDLWLLCDMSNSVSPFSYFMLLFVYATQSRYAHIRTFLFVDALLEVTEHFQ GQDWSDALHSMKRLKGFNLTGYSHYGKVLQQFAAEHLTQLSRKTTVIILGDGKNNGYK PEGHEALAQIKESAAALYWLNPLSRNLWGTADCLMEKYEENCTGAWPCCNIQQLEQFL LSL" gene complement(620215..620409) /locus_tag="Dhaf_0560" /db_xref="GeneID:7257527" CDS complement(620215..620409) /locus_tag="Dhaf_0560" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457063.1" /db_xref="GI:219666628" /db_xref="GeneID:7257527" /translation="MKRYISKIVLTASLLSFLVAVIQALISRFGGSLGKDLYFIALIA TIGVLFLGLYRIIDLLEARR" sig_peptide complement(620215..620289) /locus_tag="Dhaf_0560" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.615 at residue 25" gene complement(620481..621977) /locus_tag="Dhaf_0561" /db_xref="GeneID:7257528" CDS complement(620481..621977) /locus_tag="Dhaf_0561" /inference="protein motif:PFAM:PF01595" /note="PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cth:Cthe_2870 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF21" /protein_id="YP_002457064.1" /db_xref="GI:219666629" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002550" /db_xref="InterPro:IPR005170" /db_xref="GeneID:7257528" /translation="MIWAILHCPYCCVFFYGYNKGCQSNKAFLPLSIPWQQHNHYQDK AEFWEGIILSDSPLLWLFLLQLIFIFFNAIFACAEIAVITMNDNKLAKLSAAGDKRAL RLTKLTEQPAGFLATIQVGITLVNLLSSAVATENFSDRLVAWFAGMGFNIPAAVISIL SVAIITVLLTYFTVLLGELIPKRLAMKKAEQIALGMSGLIYTVSRIFTPAVWLFTVST NGLLRLFGVDPNSEDEENAEEEIRMILDAGKQKGTIQPDEQNMIQNIFEFDDISAGEL MTHRTEVALLWLDETDEQWQQTINESRHSIYPICSDSPDNILGVLYAKDYFRLKNKAR DEVMKNAVQSAYFVPESVRADVLFRNMKKSRNHFAVVVDEYGGMSGIITMNDLLEHLV GDLDDDISMPAESPLIERIDSKTWRIQGSAPLDEVTKQLGVLLPDEDYDTFGGMVFGL LGSIPGDGSTPELEEYGLAIKIIKVKDRRLESALVCLSGAESPDTAGG" gene complement(622172..623464) /locus_tag="Dhaf_0562" /db_xref="GeneID:7257529" CDS complement(622172..623464) /locus_tag="Dhaf_0562" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457065.1" /db_xref="GI:219666630" /db_xref="GeneID:7257529" /translation="MKAYKEYMNNIDVSDALHQKLMSCTDAGMGTGKARTQYRAPLLR RYRAAFACLALILLGVFMLPRFMEHPLALMPGNPGISQSVDPSIKYPLVFNKAARLAA ADMAIPGHFWQELTADELRAVFPGLADMRRITATANFSSEQNVAALFNIDAHMLSPSG LETYLQLAPGQVQLDYAFDVETKTSDLLGTEVTAGYFETRPNSQGLKNIIYFAAFQLA DLAYYVELGGPEAEKEALQAEISELVGRLIEGGRADLTVFHPFIPELREEGLTLGEAR ADADFGAYLPTDLPEGFAFEDALRSINQNQDALFVNWTKSMGYINWRVSLLEDKDQER ITPIDHKENYGLCLYPLPRADSVPGELQDIVDNPIFLIDELTLDAVRARTYEIADAGD EPGQRMSFSVLYGDVLVEIVVKGAAPERIFEILQGIKQ" gene complement(623451..623942) /locus_tag="Dhaf_0563" /db_xref="GeneID:7257530" CDS complement(623451..623942) /locus_tag="Dhaf_0563" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbk:CLL_A2221 RNA polymerase sigma-70 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457066.1" /db_xref="GI:219666631" /db_xref="InterPro:IPR000838" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257530" /translation="MAYKSARPEDFEVFVTTHENRLYRTALAITGNIPDAEDIVQEVF LRAYEKAPQFESAEHAKAWLIRVTVNLGKSRLRSPWHKRREPFLDSYPASEPKQYELL EQIMALPSKYRTVIHLFYYEDYSIKDISELTGQKEATVRSLLTRARQKLKLSIKEDDY ESL" gene 624141..624383 /locus_tag="Dhaf_0564" /db_xref="GeneID:7257531" CDS 624141..624383 /locus_tag="Dhaf_0564" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457067.1" /db_xref="GI:219666632" /db_xref="GeneID:7257531" /translation="MYYTKEEINTILAGMQEGKTYAQIMDEMHPRSELLCLYDCAEEN MRSFSLIGAIYNAITKKGKPKLQNPYTECLECADCL" gene 624621..624971 /locus_tag="Dhaf_0565" /db_xref="GeneID:7257532" CDS 624621..624971 /locus_tag="Dhaf_0565" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ayw:AYWB_566 hymolysin-related protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457068.1" /db_xref="GI:219666633" /db_xref="GeneID:7257532" /translation="MAKRYIMLRPEEEAAAEAESTLKEMICFGENSKNYRFPDVEVND ENQVKLQKLVDEYNLLIEQEENKDLDLKTFFAGKQIKLEHVDEFEEPRDMFILLIYFK EVCKLTDFEPVAVI" gene complement(625106..625417) /locus_tag="Dhaf_0566" /pseudo /db_xref="GeneID:7257533" gene complement(625624..626466) /locus_tag="Dhaf_0567" /db_xref="GeneID:7257534" CDS complement(625624..626466) /locus_tag="Dhaf_0567" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cpr:CPR_0996 sensory box protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002457069.1" /db_xref="GI:219666634" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7257534" /translation="MNYNSIPTEIIDTILAELKIGLTLVNNTGKIIYFNQLAGELLGW DNKLPENTILSCHKKENQPKVIEKLNQPAAMEWHKVIKTQNRFIENAYSPINIPDKFM GAMILTKDVTAREESLEKLKKNAETDALTGLYNRNLFHTVIQSYITESKPYGLIMLDI SGLKYINDHFGHEEGDRILKEAAEAIRSSIRDTDFAFRFGGDEFLILTSYQEAVLKTI ANRIRSKNKIPTENTPAVLNLSLGYATSLEEKNMEAVLSSADQRMYRDKQLFYLGDGK YFKQ" gene 626708..629164 /locus_tag="Dhaf_0568" /db_xref="GeneID:7257535" CDS 626708..629164 /locus_tag="Dhaf_0568" /inference="protein motif:TFAM:TIGR02776" /note="TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: cpy:Cphy_1729 DNA ligase D" /codon_start=1 /transl_table=11 /product="DNA ligase D" /protein_id="YP_002457070.1" /db_xref="GI:219666635" /db_xref="InterPro:IPR002755" /db_xref="InterPro:IPR012309" /db_xref="InterPro:IPR012310" /db_xref="InterPro:IPR014143" /db_xref="InterPro:IPR014144" /db_xref="InterPro:IPR014145" /db_xref="InterPro:IPR014146" /db_xref="GeneID:7257535" /translation="MRSKLNQYNQKRNFTRTLEPEGITEMPQEGLRFVVQHHLARRDH YDLRLEWDGAMLSWAVPKGPSYNTRDKRLAVQVEDHPLEYRHFEGTIPKGEYGGGVVM LWDEGFWEPYVDVDGGLHEGMLKFVLKGRRLKGRWALVRMKGKAGDKKDNWLLLKEKD DYVQTADGISQFITSIRTGRTMTEIEEGEEEKFTRNPFSSTEVQLAKLVRHLPEGEGW LYELKYDGYRIVAYLEGHRVRLMTRNGHDYTERFQDVASSLADWAEGRAMILDGEMAI TDPEGKTDFQALQNYLKNPRTKNLTYILFDLLALDGADLRGHPLIHRKETLAALLENA PPNLHYSRHVRGKGEESFRAACEAGMEGIIGKKADALYSGTRNGDWIKLKCDQRQEFI IVGYTLSQKRISGISSLLLGIYEGRELVYAGRAGTGLKESDMEELEEKFKDIRRSSAP FKPAPKPRANERITWVEPELVVEVKFADWTEENLLRQASFKGLRADKNPREIRRERAD EEKDDGELQLQPPAPERKSLMKINTNSMIIEGIKISSPDKVIFTDPEITKVDMIRYYA KVAERMLPYVSRRILSIVRCPKGVAQTCFYKKHPGPGSQGVVTIPILTSDGTTEDYFY IENPSGLIAEAQMGTLEFHIWGSRVDELEKPDLMVFDLDPDEGMELGTVRQGVRDLKT ILAELSLNSYLKTSGGKGYHVVVPLKPAVSWGVFHDFAQGVAQVMEQKWPDRYTSNVR KAKRTNRIFIDWIRNGRGATSIAPYSLRARRGAKVSMPITWEELDTVAPDGVDMAEAL RRIQDSDPWEGFFRNQQRLQ" gene 629322..629585 /locus_tag="Dhaf_0569" /db_xref="GeneID:7257536" CDS 629322..629585 /locus_tag="Dhaf_0569" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: pph:Ppha_1042 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002457071.1" /db_xref="GI:219666636" /db_xref="InterPro:IPR003756" /db_xref="InterPro:IPR006442" /db_xref="GeneID:7257536" /translation="MNGKEDIRPISYIKANAAEVLDQVNESRRPVYVTQNGEARAVLL DTESYEKLKNAVGLLKLLTQGEEDIAKGKVLSQEEFFLSMDRN" gene 629619..629945 /locus_tag="Dhaf_0570" /db_xref="GeneID:7257537" CDS 629619..629945 /locus_tag="Dhaf_0570" /inference="protein motif:PFAM:PF05016" /note="PFAM: plasmid stabilization system; KEGG: gme:Gmet_0677 plasmid stabilization system protein" /codon_start=1 /transl_table=11 /product="plasmid stabilization system" /protein_id="YP_002457072.1" /db_xref="GI:219666637" /db_xref="InterPro:IPR007712" /db_xref="GeneID:7257537" /translation="MNKMYQVLWTQTAQQDLRTIIAYIADDNITVAQRIYTEIRQKCG NLRQLPHQERIVPELKYHGITLYRELIIRPWRIIYKLEENKVWVLAVIDGRRNMEDIL LNRFIL" gene 630249..632036 /locus_tag="Dhaf_0571" /db_xref="GeneID:7257538" CDS 630249..632036 /locus_tag="Dhaf_0571" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002457073.1" /db_xref="GI:219666638" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7257538" /translation="MDKQKTEKENRIEMSRRSFLKGSLTAGMLAAGGAMLTACSPATT GSAGAGAGDAGTAGSGDGNAGSRIAPGYANPDGIGIPLQPDRTEDADVVVIGSGMGGF VAAMLSKELSPESRVIMLEKNGFLGGNTNFAEGGGGFANLSPADARMKSLSECAARNY VVDPQLFYTMCLEQGDCSDWLFAKHKVPLAFYGSPQPLYEGGHGASAIKTLTPQAEAL GVDIRLDSRAFALVLGDEYTVTGLQYKDGDDKVVQVNAKAVVIASGGMNNNSDLLKLY ANQDVNKIIPLGIGQDGDGHLMVEQTAHGKSLLQTIDGFFAGMGTNSEPGDFNSDLNT AVGFQFSDIFVNQYGVRFYDESVSFIKGFGLTAISQIILAQAQAFSIFDESYLRKWEA GEWQNGKNGYDSATKLPRSDYPLQVREDLEKFSSMSWFYQADSIEELGKAIAADVETF VVEDFVKTVEAYNAAAAGAEDEFGKPAEFIWPLGTPPFYAVKAGVNAYNTNGGIRINR SAQVTDAKGKPISGLYASGIATAGWDSQTYGGGTNQPVAIWCSCAAARHLVENCLGGT VDPNWMGDVHVTDLYEEFANIDTSGNPLG" sig_peptide 630249..630398 /locus_tag="Dhaf_0571" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.426 at residue 50" gene complement(632246..633139) /locus_tag="Dhaf_0572" /db_xref="GeneID:7257539" CDS complement(632246..633139) /locus_tag="Dhaf_0572" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_3865 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457074.1" /db_xref="GI:219666639" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257539" /translation="MEIKQIYYFTEVSKYGSFAQAAKMLFVTPQALSKSINNLEKEYN CQLFIRKNNNLILSDIGRGLLPQAKALLEDYYAFDQRIKQLSEIENGYFRVAIVPDSL SILDINLFKKFRELYPQLNPDYLELPDRVVEEYLEAGLVETCFHINTLPNQEEYESVL LCSSELCAITRGGNNCLDRKDYVTLKDLADKKIVTKGESYKSFALLAKAAQAENITLN YEVKTADTSLALDMIASPGYVGTGPYAMYGVLEHTGDTAVPFSPSLPWNIYLSYKKYK PVSKPVQLFIKYVKEHYSISD" gene complement(633195..634106) /locus_tag="Dhaf_0573" /db_xref="GeneID:7257540" CDS complement(633195..634106) /locus_tag="Dhaf_0573" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: msm:MSMEG_3840 LysR-family protein transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457075.1" /db_xref="GI:219666640" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257540" /translation="MDISKLKAFLVCCEEMNYTKAAVRLFISRQALRQTIQSLETELG TTLFSNLRNRLSLTASGETVRNYAEELTRTYESMLMEVGAVQGKTLRLGISCSLLPFF SPELPGYLEEFGTAHPELPLELLSLTTDQTIEKVLSGELTAAILVMMDWDIPGIAADT ICRFPFGVTFAETHRFSRKKQIGIEDLAGEKCVVWGSPELIMRPLYEELQKAGVQISV EVIPSAKTAFYLMENENRLMFEYTYPNTKQLQVERNSPLAGSAFSWSLTLIHKSQESI LPLTLLKDFLIAKYDYITISRNIIPVS" gene 634233..636206 /locus_tag="Dhaf_0574" /db_xref="GeneID:7257541" CDS 634233..636206 /locus_tag="Dhaf_0574" /inference="protein motif:PFAM:PF04205" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002457076.1" /db_xref="GI:219666641" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7257541" /translation="MKKDFSRRDFLKAAAAGVVSTSTLGILSGCSSGSPASAPKGTYK PGTYTATAQGMGEVTVTMTFDENTITDVVLDLANETAGIGQAAKDTLIAQILDGQSVQ VDGVSGASITSKAVMKAAADCITQAGGNPVVVSPGSSGSAGTDWLGQAPEIADSEIVK TYDYEVVVIGAGTSGTFAACSAVEEGAKTVLIEKSGADFGGSGIRDTLGAIGSKQQIA NKDNPDKFDVIRLMYQHSQGYGDQRLFKVWADNSGEAIDWYTERMAKHDVKVLHEVDN HDTGEKFEFYDVGHSVQWEGREYKSQFTMFLLLDDYKAKGLEVHHDTEMIKLLKDGSK VTGILAKSGDKYVRYNASKGVIVCTGGYSNNTEMLQALQPETLKMTGVNRSFPGSSGQ GIKACLWAGGIMDETHAGMIFDRACVKPDASGPEDAGWFWMGSQPFLKVDLKGRRFTN ESGSYDHILHTAFNLLPEHTYAMIWDADYPEDIKRFESHGCSRLYPHANGTESVFPME YIQNVMNPDLQKQGYIVQADTIEELAGKLNIPADNLKATVDRYNELYDQQKDEDFDKE PFRLSQLRTAPFYGTRQCGGYFIATMDGVKINTDMNAIDKDGNAIEGLYVAGDCSGGY FHGSYVNLLAGAAAGRSVTFGRLAGRNAARRRV" sig_peptide 634233..634334 /locus_tag="Dhaf_0574" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.501 at residue 34" gene complement(636287..636418) /locus_tag="Dhaf_0575" /db_xref="GeneID:7257542" CDS complement(636287..636418) /locus_tag="Dhaf_0575" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457077.1" /db_xref="GI:219666642" /db_xref="GeneID:7257542" /translation="MEDVAVTNATVIIKGLETFATTTLDFVDCLMVGYQKEERPNRF" gene complement(636499..636615) /locus_tag="Dhaf_0576" /db_xref="GeneID:7257543" CDS complement(636499..636615) /locus_tag="Dhaf_0576" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457078.1" /db_xref="GI:219666643" /db_xref="GeneID:7257543" /translation="MKVFDTNAVLRYILQDDKKMADVVEDHLKQGDSFILRR" gene complement(636602..636892) /locus_tag="Dhaf_0577" /db_xref="GeneID:7257544" CDS complement(636602..636892) /locus_tag="Dhaf_0577" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: spd:SPD_0255 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_002457079.1" /db_xref="GI:219666644" /db_xref="InterPro:IPR007337" /db_xref="GeneID:7257544" /translation="MAKSSSMYIRIDPKIKAEVEEIYARYGMSITDAINVFLYQSRNV NGLPFDLRPSAQETRVPLSPSMKGALRKYADPALRAKEEGAWEKAAEKHEGI" gene 637166..638107 /locus_tag="Dhaf_0578" /db_xref="GeneID:7257545" CDS 637166..638107 /locus_tag="Dhaf_0578" /inference="similar to AA sequence:KEGG:Teth514_1184" /note="KEGG: tex:Teth514_1184 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457080.1" /db_xref="GI:219666645" /db_xref="GeneID:7257545" /translation="MKDNITIGIPRAFLFFKYQYLWQTFFAELNCQVILSPETNKKIL KEGIDSSIDESCLSAKIYMGHLAYLRGKADFILVPRIVGFGRKEEVCTKFNALYDIVK NTFKEVNLLSYNIDMAHQESEFKGFMKMGRELGKNPALVLKAYLKGKRLQKKMELQLA EEQESLIQGKDKLKILIIAHDYNTYDKVVGYPVVKHLESLGIVPVYADAADKKKTALK SRLISDTLYWTFNKELIGAIDHYQQNIDGIIFISTFPCGPDSLVNELCLRKIKGVPMA NIIVDELQGEAGLQTRIESFVDIIMERKKTGREAQIG" gene 638100..639194 /locus_tag="Dhaf_0579" /db_xref="GeneID:7257546" CDS 638100..639194 /locus_tag="Dhaf_0579" /inference="similar to AA sequence:KEGG:Teth39_0674" /note="KEGG: tpd:Teth39_0674 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457081.1" /db_xref="GI:219666646" /db_xref="GeneID:7257546" /translation="MASQEKIMSFPHIGNYHVAIEFLLKHVLENIQVLTPPPITKKTL ELGSKYSPDFVCVPFKYNLGNYLEALEQGANILVQSGGGCRFGYYGEIQEQILRDLGY DFEFISLIDNEKVNPLAFFNRFKRLNPQLSFTRFAYYFQLTFKMIEAMDSLDHMIRSN IGFAVREGSFELLHKEFLRELAAVEGFRSLDKLYRKYDALFRQLEVNKPDNPLRVGIV GELYTLMEPFSSCFIEKELAKKGIQVTRFITVSYLLRHHPQSSDLLKLAGNYLEYEIG ADGTDSVARAKMLAEAGYDGVIHVKPFGCTPEVNSMPMLQNISNDYKMPILYFSFDAQ TSETGVLTRLEAFHDMLMMRREANRWQNVI" gene 639176..640279 /locus_tag="Dhaf_0580" /db_xref="GeneID:7257547" CDS 639176..640279 /locus_tag="Dhaf_0580" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: tte:TTE1991 2-hydroxyglutaryl-CoA dehydratase activator" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002457082.1" /db_xref="GI:219666647" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7257547" /translation="MAKCYLGVDSGSISTKGVIIDQNNKILAEKYLWTEGNPVEAVKA VIADLKAQIDGINCTKDADGNDDISGNGGNDNSSNGDSGNRVTQGIEIKAVGTTGSAR RLIGALLNAQVVKNEITAHAVGTLSVYPDVRTIFEIGGQDSKIILVEDGIVVDYAMNT LCAAGTGSFLSSQAKRLGMEVEEFGELALRSQNPTKIAARCTVFAESDMVHKAQIGHK KEDIVAGLCHAVVANYLNNVGKGKHTKAPIVFQGGVSKNVGVIKAFEEATGETIHVDP HAHLMGALGAALLAKSSGQEQDFNFSMTEMHFDTRGVECQGCPNNCEVICVYRNEELI DAWGNKCDKGAVRGSEAVRKKEEPVVKGDEMVS" gene 640820..643390 /locus_tag="Dhaf_0581" /db_xref="GeneID:7257548" CDS 640820..643390 /locus_tag="Dhaf_0581" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bph:Bphy_3526 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457083.1" /db_xref="GI:219666648" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7257548" /translation="MEKGQIQTHIKGLGWCGFGIGSNSAEVDVKDGKILRIRPLHFDK EYKPEEMKPWKIKARGKVFEPTMKSLIPPFSMAYKKRVYSPNRIPYPLKRVDWDPEGE RNPQNRGKSKFVRISWDEAAELIAKELKRVQSTYGPCSVLAQADGHGETKAIHGPHGC QTGLLELLGGYTVQARNPDSWEGWYWGAKHVWGQDPVGQGTQTNLWKDVADNSEILLF WGCDPETTTWGWSGQQASRLCYWFTEIGIKSIYVCPDVNYGAAVHADKWIPVRPNTDA ALQLAIAYTWITENTYDKGFIETHTHGFNQFADYVLGKEDGLPKTPGWAAEICGVPSR TIKALAREWAARATTIVHCNGGSYVRAAYSSEPGRLEVCLLAMQGLGKPGRNQLKMIE WGLFNMFDQIPHPRPEILPNVEGAYHGWYFTIPKQFIPKTLVPEAILRDEPITWYGTT IAGFPREDQFIQYKYPADDGGSEIHMIWSDTPCWTTCWSGGNNMIKALRSPKIEFVVI QHPWLENDCLFADIILPINTKLEEQDISVDVFSGQFNHIFHEGQCIEPLYESKSDYEA VCEVAKKLGLYEEYTKGKSIEDWIKAGFETSGVAHKISYEEFREKDYYMIPTAEGWEE DQAGFSPFYNEPEVNPLQTPTGKIEFYATGLEEFFPDDKERQPIPKWIPFGESHQESL LHPRSEKYPFLIVSNHPRWRVHANLDDVTWFREIETCKVKGADGYMYEPVWINPVDAE ELGIHKGDIVKLFNERGYVLGGAYITERIMPGVVYQDHGARIDMIVPGESDRSGANNL ICPTMTTSKNCAGEVTSGYLVGVAKVDINELKAQYPEAFAKKYDPNAGLVVDSWIIGG" gene 643395..644210 /locus_tag="Dhaf_0582" /db_xref="GeneID:7257549" CDS 643395..644210 /locus_tag="Dhaf_0582" /inference="protein motif:PFAM:PF05738" /note="PFAM: Cna B domain protein; KEGG: bph:Bphy_3525 pyrogallol hydroxytransferase" /codon_start=1 /transl_table=11 /product="Cna B domain protein" /protein_id="YP_002457084.1" /db_xref="GI:219666649" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR008454" /db_xref="GeneID:7257549" /translation="MKVFVFDAAKCNGCYGCQVACKDEHVDNDWSPYAKPQPDTGHFW MKVNQKTHGQVPKVKVEYFAKPCMHCDDASCIKVAKNNAVYKRPDGLVIIDPEKAKGQ RAIAEVCPYEAVYWNDTLDIPQKCTGCAQLIVEGKEPRCVDACATGALMFGDESEFVN ILTKAEVMNPEYGMKPRVYYLNLPKLFVAGEIYDPNIDECLSGVEVTLTNIDTGKVLK ETTDNFGDYWFKKLEAGKYSLTAKKEGYQVYVLNGFWVEDSLKVEDIALQKQV" gene 644402..644683 /locus_tag="Dhaf_0583" /db_xref="GeneID:7257550" CDS 644402..644683 /locus_tag="Dhaf_0583" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457085.1" /db_xref="GI:219666650" /db_xref="GeneID:7257550" /translation="MMVVLVTLLVLGMMGGVLFISGIYQKIEKIGAFGAILPLCGLVA AIGGIYSGAKINTGSTRDAVKEALLFVLYILGIGTILAVLVGVIAFYTI" gene 644697..645068 /locus_tag="Dhaf_0584" /db_xref="GeneID:7257551" CDS 644697..645068 /locus_tag="Dhaf_0584" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tpd:Teth39_1126 SpoVA protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457086.1" /db_xref="GI:219666651" /db_xref="GeneID:7257551" /translation="MYIAAFLLGGILSALFQIFMIFTKLDPPRILILGLGLGALLTPY GMMTALSEWGGAGLLVMVMGAGNAITGATLELMNGNQEPIVLILGLLVILTLMGIAAG SLRLAVIKSRRKQDFADGMTS" gene 645306..647369 /locus_tag="Dhaf_0585" /db_xref="GeneID:7257552" CDS 645306..647369 /locus_tag="Dhaf_0585" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tex:Teth514_2035 fis family GAF modulated sigma54 specific transcriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002457087.1" /db_xref="GI:219666652" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7257552" /translation="MVYFIQNPSLLLSCDNFLKQENKLSTNLWDEVKDSKRKFIEENV DPRLDPIIPREVAESWIVAKNQHLDPYVKSFEVLLEANKFEKVIAKKADLVETASNYI HNFHEILNYSNFIMVLTDENGVVLLIEGSKKEIEAFNKLNIRLSSLLNEKIIGTSAHT LCIRHRKPIQFIGPYNYSMILQDNISSATPIFNDHGSVIGTLVVVQMLARKDMQNIQA HSLGWVMAMGYAIENLLELKKQNNSMTLMNGTLEATLSLIDDGVITVNENCYISHINK EGINILASNPQEKIIGRHLSEFVKDDQLIIINESIHKGRFVQEYETIFMNRGRDTQYL LNIRPIADGQGKYNSGAVIRLSRSDKVNRMVANRGGTPASFKFEDIKGKSTSLAKSIQ IAQNVARTGYNVLLIGESGTGKELFAQSIHNSYKADGPFVAVNCASLPRNLIESELFG YEGGTFTGADRNGRPGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGGSR GIPVDFRVIAATNKNLSLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFI EDISKKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNAMVYGVNMSTNGVIELSNLPDE MTSNDYFRTKVNTRKLTLAEIEKEVIFEALSQTGNDASEASRILGIGRTTIYRKLKEY GIDIK" gene 647625..649445 /locus_tag="Dhaf_0586" /db_xref="GeneID:7257553" CDS 647625..649445 /locus_tag="Dhaf_0586" /inference="protein motif:PFAM:PF01391" /note="PFAM: Collagen triple helix repeat; KEGG: bld:BLi00801 hypothetical protein" /codon_start=1 /transl_table=11 /product="Collagen triple helix repeat protein" /protein_id="YP_002457088.1" /db_xref="GI:219666653" /db_xref="InterPro:IPR008160" /db_xref="GeneID:7257553" /translation="MALLTTGLIENSPVSGIRATTVLSVRVVNDDSASASVQISGSYV SGTTTTAYVLEVFILEPGEVATRSYSANFDAFQFQFTTSLENVEISAWGKDNEGNLIA AHRVLPAELDPLDQNGGAGPTGATGATGPAGPTGATGATGPAGETGATGATGPAGETG ATGATGPAGETGATGATGPAGETGATGATGPAGETGVTGATGPAGETGATGATGPAGE TGATGATGPAGETGATGATGPAGETGVTGATGPAGETGATGATGPAGETGATGATGPA GETGATGATGPAGETGATGATGPAGETGATGATGPAGEPGGPTGPTGATGATGPAGES GGPTGPTGETGPTGATGETGPTGPTGATGETGATGTFEPNPFAVYVQAGAVGGDGTQA SPFETIQQGVTAVSPTGTVHILGGTYPITATISVNKAGVTLKGYPNTLIELQAAVIPF AVTGSGVTIDGLTITSDNPYAVPFIQLGGSNHKLINNYFYGPPQAGPSDTWVVNRGFV TQANNMQNLTVQNNIFYFLRQPAYLNPNTTGYIIDNVVYNTRGFVVDRAVVVLSGNSW GSPENAVDIALLVGTIAGPPYDPLADLAANNSDASISDQR" gene 649544..649849 /locus_tag="Dhaf_0587" /db_xref="GeneID:7257554" CDS 649544..649849 /locus_tag="Dhaf_0587" /inference="similar to AA sequence:KEGG:Daud_0375" /note="KEGG: dau:Daud_0375 PilT protein domain protein" /codon_start=1 /transl_table=11 /product="PilT protein domain protein" /protein_id="YP_002457089.1" /db_xref="GI:219666654" /db_xref="GeneID:7257554" /translation="MILHVLSIVLVEAYWVLRKIYNFDKKMILGVFEDFIEADGVELE EDGLVQRVLACFRRVNVDLVDVYLAERSRSPALSVLTWNAEDFRKLECEFYRPQDLR" gene 650217..651323 /locus_tag="Dhaf_0588" /db_xref="GeneID:7257555" CDS 650217..651323 /locus_tag="Dhaf_0588" /inference="protein motif:PFAM:PF00465" /note="PFAM: iron-containing alcohol dehydrogenase; KEGG: aoe:Clos_0621 iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_002457090.1" /db_xref="GI:219666655" /db_xref="InterPro:IPR001670" /db_xref="GeneID:7257555" /translation="MEFRYFMPTEIYFGEDVVLKHQEVFKTIGSKALIVTGRSSAKNN GSYDEVTKALSETGVEYILFDEVEQNPSLETIEKAGAIGKANKADFVIGIGGGSPMDA AKAIAVFIKNPEITKDNIFSGQKLASIPVVVVATTAGTGSEVTQYSIITSNKERTKKN LGQRIFPKVAFLDCKYTYDLPYDITVNTALDAFTHLVEGYLSSKSTPMSDIYGEKGFE LFKDCFDRLLNNELDKEFRRKMMLASTLAGMLISQSGTSLPHGMGYALTYHKGLPHGL ANSILTMEYLKSFQDQRKIKKMLSILQLDDLTELEGIFKKLLKVRIEIAEEEIREYAK NFMANKDKLKNHPEAVELEDIVGIYYRSLCEHRE" gene complement(651363..652406) /locus_tag="Dhaf_0589" /db_xref="GeneID:7257556" CDS complement(651363..652406) /locus_tag="Dhaf_0589" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_2061 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457091.1" /db_xref="GI:219666656" /db_xref="GeneID:7257556" /translation="MNIGYLQETLSSITEVKPLGKTAEVNGVLCHIIGLVRYGDILRL AALQYDDEFAERAEAAEIAELNGLHEKPETNRERLRGDRSLDMTNIFHAVQTIRIGEK QFEINEMETSRCDWQNWQIPVLLTEFLKQGWNPAGLEYQSMENLFLTFMRLSGDYDCL PDVGENPAVQLTFRREHIPHPVEQPLTLSVGTDYPDKLYFQDKNTGEKHWVQINRVYL ADMWAEMRQTFNDPRLTEQFSAAELAEHQGEFERRFVTICPQGMCFPVIEYECEEDLY LQFYSQEWLDNLPQSNSSCIGFIMKPDKKAGISGLPLKAAVIEEPMPADRRIIDTELF SCSLPRQYDDVIL" gene 652709..652915 /locus_tag="Dhaf_0590" /db_xref="GeneID:7257557" CDS 652709..652915 /locus_tag="Dhaf_0590" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457092.1" /db_xref="GI:219666657" /db_xref="GeneID:7257557" /translation="MGTKKKKQTIGVIKPLELMKRSPNKMNTSMAVVRQGAGVHQDKT KYNRKRMKQGGFDDGYPCVSHWAV" gene 652965..653654 /locus_tag="Dhaf_0591" /db_xref="GeneID:7257558" CDS 652965..653654 /locus_tag="Dhaf_0591" /inference="protein motif:SMART:SM00704" /note="SMART: zinc finger CDGSH-type domain protein; KEGG: rci:RCIX1685 hypothetical protein" /codon_start=1 /transl_table=11 /product="zinc finger CDGSH-type domain protein" /protein_id="YP_002457093.1" /db_xref="GI:219666658" /db_xref="InterPro:IPR006622" /db_xref="GeneID:7257558" /translation="MSKDQKAGKIKIIKNGPYWVTGNVPLSEKIITPKGKGYEFKEGR RFPPSEEYYLCRCGKSKKAPFCDGSHTRTNFAGTETASRAKYQDRAEVFTGPGLDLLD DNRCAFGRFCHTEKGIVWELIENSDQDEYREMAIKSANECFAGRLTAVDKTGKAIEPE YEPAIEVLQDPEKGVSGGLFVKGYIPLESADGEVYEVRNRVALCRCGRSGNKPFCDAT HVPIGFSDGEL" gene 653697..654026 /locus_tag="Dhaf_0592" /db_xref="GeneID:7257559" CDS 653697..654026 /locus_tag="Dhaf_0592" /inference="protein motif:PFAM:PF08821" /note="PFAM: Protein of unknown function CGGC region; KEGG: gme:Gmet_3511 hypothetical protein" /codon_start=1 /transl_table=11 /product="Protein of unknown function CGGC region" /protein_id="YP_002457094.1" /db_xref="GI:219666659" /db_xref="InterPro:IPR014925" /db_xref="GeneID:7257559" /translation="MKVGIIRCQQTEDMCPGTTDFQVAKEGKLAFAETGPVEVVGFLS CGGCPGKKAISRTKLMVDRGAEIIAFASCMKKGNPIGFPCPHFAQINEAVIKKVGSEV QVIDWTH" gene complement(654165..654431) /locus_tag="Dhaf_0593" /db_xref="GeneID:7257560" CDS complement(654165..654431) /locus_tag="Dhaf_0593" /inference="similar to AA sequence:KEGG:Npun_BF047" /note="KEGG: npu:Npun_BF047 transcriptional modulator of MazE/toxin, MazF" /codon_start=1 /transl_table=11 /product="transcriptional modulator of MazE/toxin, MazF" /protein_id="YP_002457095.1" /db_xref="GI:219666660" /db_xref="GeneID:7257560" /translation="MERFVKGDVVVVPFPFSDLTQAKRRPALVISSLKSDDLILCQIT SQNVRDDYAITFENQDMNDGKLDKISNVRPNRLFTADHHIVLYT" gene complement(654416..654610) /locus_tag="Dhaf_0594" /db_xref="GeneID:7257561" CDS complement(654416..654610) /locus_tag="Dhaf_0594" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457096.1" /db_xref="GI:219666661" /db_xref="GeneID:7257561" /translation="MENREVLLKELEQIPDLILVEILRYARFLKAKAAQEKFLSAHMS ENVLAKDWLLPEEDDAWNDL" gene complement(654789..655433) /locus_tag="Dhaf_0595" /db_xref="GeneID:7257562" CDS complement(654789..655433) /locus_tag="Dhaf_0595" /inference="similar to AA sequence:KEGG:Amet_3850" /note="KEGG: amt:Amet_3850 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457097.1" /db_xref="GI:219666662" /db_xref="GeneID:7257562" /translation="MLRVSHIIYKVDHLQQAVEDFRRRGFEVEYGTKRRPYNALIYFS EGPYLELLASTGMPKPLKRLLRFFGKDAMVDRLDYWDSHGGGPCGLALETLKKDLNEE RKVLERQGLGYFLMKSGRSDTKGRKLRFTGLFPDDMQIPFFMTYFNIDPKPRNFTHPN GVKRIGSIAFGTEERYIPLIRELCSDEMLHLFVGKGIKDMEFEYAPGSTPVSLD" gene complement(655461..656294) /locus_tag="Dhaf_0596" /db_xref="GeneID:7257563" CDS complement(655461..656294) /locus_tag="Dhaf_0596" /inference="protein motif:PFAM:PF02409" /note="PFAM: O-methyltransferase domain protein; KEGG: ckl:CKL_0078 predicted polyketide methyltransferase" /codon_start=1 /transl_table=11 /product="O-methyltransferase domain protein" /protein_id="YP_002457098.1" /db_xref="GI:219666663" /db_xref="InterPro:IPR003455" /db_xref="GeneID:7257563" /translation="MKNQPALDTHSIQSTMLLPLWGRAAASEKNPDILYDRQAIEIIK NCDYDFDSIAKVFGEFSGICYVVRARQIDDAIRAYMQTHPRAVIVNIGAGLDTTFSRV DNGLIRWYNLDLPDAIAYRQSFIPDSERSQSIAKSFFDTTWFEDVHFTPEEGIMFVAG GVFYYFREEELREVVAAMARRFPGGELYFDAESKQAVDKSNRMVQKTGNQRAPMYFYV NDAAALNRWAPEISVVSCLDYFAGIPRSRQWSWRSRLMARASAWMGLMKFIHLRFSHG R" gene complement(656705..656962) /locus_tag="Dhaf_0597" /db_xref="GeneID:7257564" CDS complement(656705..656962) /locus_tag="Dhaf_0597" /inference="similar to AA sequence:KEGG:Swol_0119" /note="KEGG: swo:Swol_0119 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457099.1" /db_xref="GI:219666664" /db_xref="GeneID:7257564" /translation="MPVLIKTRGFDLDFASLSLLEMKQTVKALRLLATNPRHPSLQTH KVKGTCFMEAYVNMDIRILSERTSDTIILKAVGHHDILKNM" gene complement(656931..657239) /locus_tag="Dhaf_0598" /db_xref="GeneID:7257565" CDS complement(656931..657239) /locus_tag="Dhaf_0598" /inference="similar to AA sequence:KEGG:Swol_0118" /note="KEGG: swo:Swol_0118 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457100.1" /db_xref="GI:219666665" /db_xref="GeneID:7257565" /translation="MEIIQQVQKRMLVSLAQIAKDIDLHEGDYLAIEERDGGIFLRPV TWIDKSQAYIWTKEWQEKIRRSEEDMADGNYQTFENMEDCINDLEEMIDARSNKNQGI" gene complement(657518..657739) /locus_tag="Dhaf_0599" /db_xref="GeneID:7257566" CDS complement(657518..657739) /locus_tag="Dhaf_0599" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: lwe:lwe0290 transcriptional repressor, putative" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457101.1" /db_xref="GI:219666666" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257566" /translation="MYERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQV LGKIADLFGTSIDYLVNRTDVKKPYPRRK" gene 657849..658046 /locus_tag="Dhaf_0600" /db_xref="GeneID:7257567" CDS 657849..658046 /locus_tag="Dhaf_0600" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457102.1" /db_xref="GI:219666667" /db_xref="GeneID:7257567" /translation="MEREVINLLDKRVERSLVSISAMIADAIEMAQKAKTLSVDSEEK LTLVQLELENLYLQLGKLENG" gene 658285..658458 /locus_tag="Dhaf_0601" /db_xref="GeneID:7257568" CDS 658285..658458 /locus_tag="Dhaf_0601" /inference="similar to AA sequence:KEGG:CLD_A0125" /note="KEGG: cbb:CLD_A0125 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457103.1" /db_xref="GI:219666668" /db_xref="GeneID:7257568" /translation="MTLAEKLLKEFEQLTEEKKQEVIDFVEFIKTKDQREIETLMEPV INENREALEELAK" gene complement(658680..659987) /locus_tag="Dhaf_0602" /db_xref="GeneID:7257569" CDS complement(658680..659987) /locus_tag="Dhaf_0602" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="KEGG: gme:Gmet_2268 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_002457104.1" /db_xref="GI:219666669" /db_xref="InterPro:IPR002155" /db_xref="GeneID:7257569" /translation="MSFVKSKEDIVCVSAVRTPFGKFGGSMKDIDVYELGAIAMSKAM AKISLDPALIDEVWWGNGDTSSTKDPFTPVVARQTMLKAGISPETPSITYDQACTSAL STVKYGARSIKLGEAQMVMTGGSTSFSTVPFLLRDIRWEGKKHSSFLVEDPIIPLGYK DYAPVAVDSGNVAVEYGVSRQEQDELALASHVKYGQAWERGFFKGEMEPLEITKKDKK GKVLSAQLLAKDEQYRPEISMENLARLKPIFDNPTCTAGNAPGMNDGAAAQIITTREH AEQLGLPILYTLVGISAIALQPRIMPVSPAFAIKKCLDEAKLTIDDLKVIEINEAFAC VPLVSLKLLANERFLTSDYKAMVKEASAQPILDHDPERYLKLKEKLNPNGSAIAVGHP NTASGARLMMTAAYQLQETGGGYAACAICGGLTQGAGAIIWVE" gene complement(660006..661310) /locus_tag="Dhaf_0603" /db_xref="GeneID:7257570" CDS complement(660006..661310) /locus_tag="Dhaf_0603" /inference="protein motif:PFAM:PF02550" /note="PFAM: acetyl-CoA hydrolase/transferase; KEGG: cbe:Cbei_2103 acetyl-CoA hydrolase/transferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA hydrolase/transferase" /protein_id="YP_002457105.1" /db_xref="GI:219666670" /db_xref="InterPro:IPR003702" /db_xref="GeneID:7257570" /translation="MDWKETYKKRLTTADEAVKVVQSGDFVIPGHAASESELLVSALV KRYRELENVTIIQGVSLGSSPYCQPEMAGHFFLKSIFLGANTRKSVWDNRGAFFTLMF HEFPRAFREGHLRSDVFMTMVSPPDEHGYCSLGMSVDHSKELVKCAKTVIAEVNPNVP RTYGDTLVHVSDLDYIVENDGPILELTRFAAMNDVTQAIGRHVAALIQDGDTLQMGAG TIPDAILYYLKDKRDLGIHTEMFSDGLIELIEAGIVNGSRKTLNPGKIVVTFAQGTKR VYDYIHNNPLFEFRPVDYVNNPCVIAQHDNMVAINSALEVDLSGQVCAEAIGHQQYSG IGGQLDFIRGAGAAKNGRPIIVLQSSAKNGTVSRISCKFKPGTPVTTTRNDVRWVVTE YGAVNLYCKSDSERAAALISIAHPNFREQLQEEYQAMYGRAL" gene 661661..663091 /locus_tag="Dhaf_0604" /db_xref="GeneID:7257571" CDS 661661..663091 /locus_tag="Dhaf_0604" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: pth:PTH_2438 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002457106.1" /db_xref="GI:219666671" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7257571" /translation="MIEPSTMPSNSYSLEEVMDNSYDSIFVTDAVGNILMANPTAERL LNLTITQMVGRNIRELVEQGHWDKSIALEAIEKRTTVTGMIKTRDGINLMCTSRPLFD SQGNITMVISNSRDRDTLVKLAQTLDKERELVQRYKEEVQYLREQGVKDRHLVAESTA MKNLLLEANWVGPTESSVLLYGESGTGKEILAKYIYSISRRAKEAFITVNCSAIPENL IEAELFGYEKGSFTGADAKGKPGLFELADRGTIFLDEIGEMPLVLQAKLLRVLENGEV RRLGGIHSRKVDFRLICATNRDLKKMVEHKTFREDLFYRINVVPLQLAPLRDRPEDIM AISDVLLKELNKKYGYDKVFSTETLKGFLNYSWPGNVRELRNLIERLAITTRGRVIDY QVEEMPYPPDNRAAGSHQEENGTLRIQVKAKAPLKKVMSQVEQEYIKNTLQDCQGCVS EAARILGIDRSAIYRKVQVVQLRDQD" gene complement(663237..663851) /locus_tag="Dhaf_0605" /db_xref="GeneID:7257572" CDS complement(663237..663851) /locus_tag="Dhaf_0605" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: sar:SAR2464 TetR family regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002457107.1" /db_xref="GI:219666672" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7257572" /translation="MAEDKRIRKTKRYIKQTLIEILTEKPFEQITVTELCKRSDISRI TFYAHYNDKFALVDEMFAEMLESATRDYRNSQKENNPANDTIQTFCNLLDCIFNLYNE NMSLLTYTTIDKNPYLYYMFYSYIVRNVELVIIHRDKVIKPKYSIKQVSGFICNSLWA FIIEAQTEGSTINMVRKDAKKVLTGILEANIVTEMRDNDPEKEG" gene 663992..664879 /locus_tag="Dhaf_0606" /db_xref="GeneID:7257573" CDS 663992..664879 /locus_tag="Dhaf_0606" /inference="protein motif:PFAM:PF02645" /note="PFAM: DegV family protein; KEGG: cpy:Cphy_1558 DegV family protein" /codon_start=1 /transl_table=11 /product="DegV family protein" /protein_id="YP_002457108.1" /db_xref="GI:219666673" /db_xref="InterPro:IPR003797" /db_xref="GeneID:7257573" /translation="MQDYILSCCSTADLSAEHFSEKNIHYVCFHFSLDGEQYLDDLGH SIPFDNFYSAMASGAATMTSQVNTDEFVAYFTPFLEKGRDILHVCLSSGLTGVINSAH TAKDILQERFPQRRIYIVDSLGASSGYGLIMDTLAEKKAAGMDLDSLYTWLEAHKLEM HHWFFSTTLEYYIKGGRISKTAGFFGTLLGVCPLLNMDNNGKLIPRKKVRGKKRVITE IVDRMAEHAQGGLSYGGKCYISNAGCYEDARAVADLVEGRFKNLNGSVEINHVGTTIG SHTGPGTVALFFWGDSRND" gene 664872..665525 /locus_tag="Dhaf_0607" /db_xref="GeneID:7257574" CDS 664872..665525 /locus_tag="Dhaf_0607" /inference="similar to AA sequence:KEGG:Cphy_1557" /note="KEGG: cpy:Cphy_1557 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457109.1" /db_xref="GI:219666674" /db_xref="GeneID:7257574" /translation="MTRREKAAQAVRVITVPPVMVLALLLFLFFQHKGVFTSAGELLL SVFFLSVIPLLAYPFSRLFPRCKAKGRDGQRNLAFILSLIGYAGAVLWGMIAGVSGEL LFIFLVYLASVLILTFFNRVIGVRASGHASSITGPLLLTVYFIGGKTIIPCVLLLGAI LWSSLTLKRHTLRELLLGAFSAMLAFFLCLIVICFRHSMGAVSKLVDSLLASPLLLV" gene 665937..666680 /locus_tag="Dhaf_0608" /db_xref="GeneID:7257575" CDS 665937..666680 /locus_tag="Dhaf_0608" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mta:Moth_1258 3-ketoacyl-(acyl-carrier-protein) reductase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_002457110.1" /db_xref="GI:219666675" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7257575" /translation="MAKFAGRVAVITGGAKGIGEAIVRKFYGEEAKVAVLDVDAAGAR QLALELDPSGEKVIGLGCNVVSREGVKAAFAEIMAKFGTVDILVNNAGITRDAIFHKM TEQQWDDVMAVNGKGLFNCTQEAWLIMREKKYGKICNLSSTNSSGEAGQANYSFTKAG TIAFTKSLAREGGRYNINVNCVRPGVIDTEMMRAVPEQALEDYINKTAFKRMGQPSEV ADVIAYLCSEESSFVTGEEILVAGGYIYR" gene 666735..667913 /locus_tag="Dhaf_0609" /db_xref="GeneID:7257576" CDS 666735..667913 /locus_tag="Dhaf_0609" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="KEGG: cbe:Cbei_0411 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_002457111.1" /db_xref="GI:219666676" /db_xref="InterPro:IPR002155" /db_xref="GeneID:7257576" /translation="MQDVVIVSAVRTPIASFGGALQGYGAVNLGALVIREAVQRAGIQ GKQVDEVIMGNVLQAGLGQNPARQAALKAGLPVETTAQTINVVCGSGLKAVIAAAQAI RAGDAEIVAAGGMESMSDAAFLLDQARWGQRMGHGTLVDSMIKDGLWCAFNEYHMGIT AENVAEKYGISRREQDEFAAWSQAKAVAAMEKGRFKEEIVPVAIPQRKGEPVIFDRDE YPRAGTTVETLAKLKPAFKKDGTVTAGNASGINDAAAACVLMSKEKAAALGIPYLAAI KGYGMAGVDPAIMGVGPVNAVKKALQKAGIALDELDLIEANEAFAAQALAVTKELGFP GEKVNVNGGAIALGHPIGASGTRILVTLVHEMKKRRDKLGLATLCIGGGQGIALVVEG" gene 667974..669494 /locus_tag="Dhaf_0610" /db_xref="GeneID:7257577" CDS 667974..669494 /locus_tag="Dhaf_0610" /inference="protein motif:PFAM:PF00135" /note="PFAM: Carboxylesterase type B; KEGG: gka:GK3049 thermostable carboxylesterase" /codon_start=1 /transl_table=11 /product="Carboxylesterase type B" /protein_id="YP_002457112.1" /db_xref="GI:219666677" /db_xref="InterPro:IPR000997" /db_xref="InterPro:IPR002018" /db_xref="InterPro:IPR002168" /db_xref="GeneID:7257577" /translation="MSATLVETRFGLVEGIREGGVSIWKGIPYAAPPLHSLRFRPPRE PGAWAGVREAKEFGPAALQGESPSMKFLGDSPLHKREDCLYLNIWSPGADRKRRPVLV WIHGGSFMYGSGSSHLYNGKSFAEQGDVVVVTLNYRLGVFGFLHLSDIGGEAYRGSGN CGLLDQVAALTWVRENIEAFGGDPHNVTIFGESAGAVSVGNLLAMPLARGLFHKAILQ SGTARCKVTLEAAVKMTEQLLAQLQIDRQNLSELADLPAEKIIEASGILPRRAFGPVG DGIVIAEHPEKVLYAGLAKDIPVLVGTNAHENKLFTYFDPAWKDMDESEIKVFLERTF GSSWAAGSHSAAQADALNQALSKALNQASNQAGYEDAMTHYVFTYPAIYFSEGQAKHG APVWMYRFDYASKALGGEAKAFHGLEIPFVWNTLLAQETEELTGKDPCRFQLAGLMHR AWIAFARHGDPNIPGLPDWPPYDEEIRATMLFNTHNEVVNDPDGRQRLSWEHVFKN" gene 669579..671162 /locus_tag="Dhaf_0611" /db_xref="GeneID:7257578" CDS 669579..671162 /locus_tag="Dhaf_0611" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: rpt:Rpal_1632 extracellular solute-binding protein family 5" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002457113.1" /db_xref="GI:219666678" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7257578" /translation="MSKLKRRSLTMVTLFVVLMMVISGCGSQSGSTKTPDTPPTANPA GESPGTPQHGGSLTVAYVADVTNFDPIKGTTGNDHALLWPLYDTLVKFSPDMKPEPGL AESWEFPDNTTILLHLREGVKFSDGSPFNAEAVKFNIDRVNSTDSQISDLKNIQSVEV VDDKTVKLQLSQPDSSIILALSDRGGMMVSPTAVKTHGADYSLHPVGAGPFIVTNHIP NGEIGYEANRDYWQKGLPYLDKLTVKVIPDANSQINALKTGQVDFLPNVQPQMVATLK ADANIVLSPTNTLALNMIYLRTDAPPFNDKAARLAVLYGINRQQLIDAINFGQGTVAV QPFPKDYWAHDDSINIPYDPEKSKQLLKDAGLSNVSFTLTTYPIEWWTRLANGIKGQL EEVGINVTIKTLEPNAAVQSFLGDKETNALTGNWSGRPDPQMTIASLYGKDSYYNPGK ATTSELESLIKEAAATTDQNQRAGLYKKIVNTSVVENAFSIPTFSQPMTAAMSKKIQG FEPNLLGKAIFSSLWVEQK" sig_peptide 669579..669671 /locus_tag="Dhaf_0611" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.498 at residue 31" gene 671228..672172 /locus_tag="Dhaf_0612" /db_xref="GeneID:7257579" CDS 671228..672172 /locus_tag="Dhaf_0612" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_1633 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457114.1" /db_xref="GI:219666679" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257579" /translation="MFLKFMLRRFLYVIPMLFITTLVVFSLILLIPGDPVLAILGENA TYEKVAELRQQLGLDQPVIMQYIHWLNNAVHGDLGRSLFTGQLVGHAIQQHLAITIQL VAVGMTFAIAGGMFFAITSIYFPKSWMDYAARFLGTLGTAVPNFLCAMILIIIFSLNL NWLPATGFISITDGAGSFLKHILLPGFSLSLAGIAVITRQLRSSLMETMDAEYIRTAY AKGAGRYRAIFKHGLQNAMLPVVTTIGLLMGTMLGATVVVENIFAIPGMGQLVINAIG QRDFTVVQGVVLVMIVMVVVINFLTDIVYALLDPRIEY" gene 672186..673028 /locus_tag="Dhaf_0613" /db_xref="GeneID:7257580" CDS 672186..673028 /locus_tag="Dhaf_0613" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet2850 ABC transporter inner membrane protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457115.1" /db_xref="GI:219666680" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257580" /translation="MSFKTIFKRLMAERLAFASFIFLVMLVIVALLAPHIQPYDPFKQ DLTKVMQLPSAEHWLGTDGLGCDVLSKMLMGSQTAIKSALFAIMIPLLVGVPLGVLSG YFGGVIDDVFMRIVDAIIAIPALILALGITSALGVNLWNAMMAIGIVFTPKFARLARG QTLQVRLEPYVEAAKISGAGFVWIMFRHILPNISPPIVVQASFNLSMAILTETTLSFL GMGAQPPDVSWGNLIQQGYSLIYINPWMIVYPGIAIMLTILAGNFLGDGLRVALDPKQ QRIF" sig_peptide 672186..672278 /locus_tag="Dhaf_0613" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.532 at residue 31" gene 673044..674081 /locus_tag="Dhaf_0614" /db_xref="GeneID:7257581" CDS 673044..674081 /locus_tag="Dhaf_0614" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: bay:RBAM_011360 AppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002457116.1" /db_xref="GI:219666681" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257581" /translation="MKTETPLLEVNHLKTYIPTSKGEIKPVDDVSFTIAKGEIVALVG ESGSGKSVSSLSIMRLNAGAIKYRPDSSILFAGRDLLKLKEKELRKIRGNDIAMIFQD PMSALNPVHPIGRQIAEAILLHKKVSPKEAQKTALELLNKVGIPDAQRRLKDYPHQLS GGMRQRAMIAIALACNPKLLIADEPTTALDVTIQSQILNLLRDLQKEFGISILLITHD LGVVAETADRVLVMYCGKIVEEGNVEDIFAHPQHPYTKGLMVSIPSLSGPSKETLDAI PGVVPNPLELPPGCNFVTRCGSAMVKCHEAAPELEQHPSGNRVSCWLHTSGKGDDEDD REATALVTAGH" gene 674041..675024 /locus_tag="Dhaf_0615" /db_xref="GeneID:7257582" CDS 674041..675024 /locus_tag="Dhaf_0615" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: sth:STH2823 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002457117.1" /db_xref="GI:219666682" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257582" /translation="MTEKQPLLSLQGIKKHFPVGSGLFGQKSNSVKAVDGVSLDIYPG QTVGLVGESGCGKSTIGRMVVGLSEPTAGEIYFEGRKLSEYKSKKAMGKNLQMIFQDS YSSLNPRMTVADIIAEPLVLHKVGTHKERGKRVDELLERVGLAAYHGSRYPIEFSGGQ RQRIGIARALALQPKLIVCDEPVSALDVSIQAQILNLLKEIQKDLGLSYLFIAHGIQV VKHISDQIAVMYLGKIAEFAGKEELFANPHHPYTKALLAAVPLPDPRLRDRERILLKG DLPSPANPPAGCRFHTRCPVAMEKCKVTDPALIPTSQDSRTACLLYDMSIV" gene complement(675153..676061) /locus_tag="Dhaf_0616" /db_xref="GeneID:7257583" CDS complement(675153..676061) /locus_tag="Dhaf_0616" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: chy:CHY_0059 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457118.1" /db_xref="GI:219666683" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257583" /translation="MRIEYLHYFIEVARCRSINKASKNLRLTQANLSKMMAALERHFA TPLFERSNRGITLTEHGKRVLEWSQKVMAEQTQLIQAFAEDKTHQNRQGKLTILCPAN IAGDSNANVINKFTGEYPNLKISYQEMGVPEIIKQVHKNRDYVGIIMLIDHLYNELIT EELCYYPMRDIKFVVYSHKDSRFARQGFKSISLKALSKEQLILYKPTSLSPSPFEDLF DQYGLDNIKFSVSNLFTFYDILQKGQYITLGAARQAKFFPKVLDGLVTTPIRDKINCR IGILIHRENKDNAMIQQFIRFYSESK" gene 676266..678320 /locus_tag="Dhaf_0617" /db_xref="GeneID:7257584" CDS 676266..678320 /locus_tag="Dhaf_0617" /inference="protein motif:PFAM:PF01663" /note="PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cbe:Cbei_3330 type I phosphodiesterase/nucleotide pyrophosphatase" /codon_start=1 /transl_table=11 /product="type I phosphodiesterase/nucleotide pyrophosphatase" /protein_id="YP_002457119.1" /db_xref="GI:219666684" /db_xref="InterPro:IPR002591" /db_xref="GeneID:7257584" /translation="MKRKALTDKVIVLGVDGFDPRLAKKFMDQGKMPALKEFTGRGSA REDLVLLGAMPTVTPPLWTTLATGANPGTHGITCFFASDPVNIDTMYYNLDSRQSKAE PLWNVFAEEAGKKTLVWHWPGSSWPPTSDSPNLHVVDGTQPSGINNGIPFLDLLKVVT GSEKIASSQYLPNTSHVAQGQGCIIDNAAELMEDGEEAETSVFRKVIAAGNHAKGFQF SITEQEECEIEALGNMVCDTVKAAIKPAAGWAQAPAEAKEFTFFVSGGLERRPALIVP NQQGVYDSVQFYKSKKETAPYLTLKKGEIRFDVRDTVKNDQGENVPCNRNYQLLELAE DGSKFNLIINNASQVGRDDYFHPKSLYQEVVEKIGNVPVNFRVNGSNEILVRETMLPS WENYCNWQAECLTYFMKNNKYDMIFSHLHNLDGVGHYFWHYACNQEEWKDNNELTYQQ YQEEAYCQTDRYLSKFLPFLDQGWTVIITSDHGLLTQEYHGVILGEIHGVNVPVMAEL GYTVMVKDEKGRDTKEIDWSKTRAIAIRGDHIYINLKGRNPHGIVEPADKYELETQII SDLYNYRDPHTGRRVISVAVRNKDAVHFGMGGPECGDIVYFTEEGFNKIHADSLSTQW GYAGTSVSPLFVAAGPGIKENCVTERVIRQADVAPTIAALTGVRMPAQCEGAPIYQII SE" gene 678399..680348 /locus_tag="Dhaf_0618" /db_xref="GeneID:7257585" CDS 678399..680348 /locus_tag="Dhaf_0618" /inference="protein motif:TFAM:TIGR02123" /note="TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: drm:Dred_3211 TRAP transporter, 4TM/12TM fusion protein" /codon_start=1 /transl_table=11 /product="TRAP transporter, 4TM/12TM fusion protein" /protein_id="YP_002457120.1" /db_xref="GI:219666685" /db_xref="InterPro:IPR010656" /db_xref="InterPro:IPR011853" /db_xref="GeneID:7257585" /translation="MTKDEKDLDSMDEKDLEALAEDGKRRPLTGGVALVVGALAVIWT LYTIYSTIFGVLNVLVYRGIHLTFALALGFVLFPPSKKLAGHKIAYAIDLLLALTSVA LGIYVLNSAGSFADRIGIPNRADFIFGAIAVVLILELTRRVVGKSMTIVAGVFLVYAL FGRHLPSFLAHPGVDVKMLTSTLLISLEGIFGVALGVSANLLLIFIVVAQFLVGTGTG QFIMDLSSSLIGWARGGPAKIAIISSGLFGSISGSAVANVLSTGAVTIPMMKKLGYKP HFAGAVEAAASTGGQIMPPVMGAAAFVMAEVLGVPYAKVCVSAALPAILYYVALLIMV DLEAARTQLRGIPKENLVPVKKTLKEGWFYIIPLVILIYLIMTGSSPQRAGVITIAAS IIINLLNWKNRLSLKQYLHMLKEGSLGCILIAMACATAGIIMGCVNLTGLGPNFSGIL VSLASGNQLALLLLTMVASIILGMALPTLICYMILAVLIAPALVSMGVEPMAAHLFVL YFGVISFVTPPVALAAYAGAAIANANAMKTGWTAAKIATCMFVLPFMFVYNPELILIH GLSWSVLPIIITSVIGTTAICMAIQGYAFTPIRHWPVRVILFLAGISLIYPGMYTDLL GIACFALIVGANYRFKQKDRVVLSE" gene 680382..681395 /locus_tag="Dhaf_0619" /db_xref="GeneID:7257586" CDS 680382..681395 /locus_tag="Dhaf_0619" /inference="protein motif:TFAM:TIGR02122" /note="TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein (bcsp31-2)" /codon_start=1 /transl_table=11 /product="TRAP transporter solute receptor, TAXI family" /protein_id="YP_002457121.1" /db_xref="GI:219666686" /db_xref="InterPro:IPR011852" /db_xref="GeneID:7257586" /translation="MKKMNKVVSVLVLTAMVLMLISGCGSSAGSSGGNDQDKQKPAAN TQLRIMSTSGGDKYFLTTGICKISDDSSLPIKVVHQTVAGDAEAVRRLKAETADIGMA NVFVASMFYNGTYTFEKDGAFKEMRALFAGPSAVAQFAVRADSPVKSFEDIKNKTRMA TFMGASQVYTKLILDAYGKQENVDYIFISSNYADMADQIKDKTVDVIQFWSGAPCPQA ENIEADVPIRLLPVNDQAIENIKKAIDPSAYPAVVKAGTYKGQAEDVTVPATPTYFIA RANTDEETIYNFTQLVLENLDELVKIHPLAKEIDINNLTQGLPFPLHPGAEKYLKEKG YLK" sig_peptide 680382..680483 /locus_tag="Dhaf_0619" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.369 at residue 34" gene complement(681498..682403) /locus_tag="Dhaf_0620" /db_xref="GeneID:7257587" CDS complement(681498..682403) /locus_tag="Dhaf_0620" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cau:Caur_1304 LysR substrate-binding" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457122.1" /db_xref="GI:219666687" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257587" /translation="MEMRQLRYFDSVVKYGTMREAAARLFISEPSISQQINELQKEIG VPLFEKQGRKIALTAEGKQLLPLVQAILEAVTELETGISEILNPNSGLIRLGVIPITR LDLVPKKLTEFVKIYPDICVELIESGTSEIIERLLNDTMDVALIAANSRIKSLMEMSG IKHKVVSNANSVAVVSCSHPLAKYDKISFSRLLNERIILRRQGIYREEIDNFLGDSVK NDGIYSTDTYETAIKLVDSNLGIAIVPETFIRTYGLNEGSNIKILFLDDFQVSLDICF IYKKRNYYPLFLTNFMRIFTDSNDG" gene 682716..683180 /locus_tag="Dhaf_0621" /db_xref="GeneID:7257588" CDS 682716..683180 /locus_tag="Dhaf_0621" /inference="similar to AA sequence:KEGG:GTNG_1842" /note="KEGG: gtn:GTNG_1842 putative tricarboxylate transport protein TctB" /codon_start=1 /transl_table=11 /product="putative tricarboxylate transport protein TctB" /protein_id="YP_002457123.1" /db_xref="GI:219666688" /db_xref="GeneID:7257588" /translation="MKNLLADRIAGGFFLVIGGMAIYEAIRLYPMHIGRSIVGDETFI GFLGVALLILGGLFLFVLKPQGDEQAEFPTGQLRKKMLFVMGLVFAYWGLLQVIGYPA STFIIGLGLFRTIGDYGWLRCTVFSALLSIVFYGIFVMWLKTPFPQPLITIF" gene 683194..684702 /locus_tag="Dhaf_0622" /db_xref="GeneID:7257589" CDS 683194..684702 /locus_tag="Dhaf_0622" /inference="protein motif:PFAM:PF01970" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: bja:bll0952 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF112 transmembrane" /protein_id="YP_002457124.1" /db_xref="GI:219666689" /db_xref="InterPro:IPR002823" /db_xref="GeneID:7257589" /translation="MEALQMLFSGFALALEPSNILMAALGAFVGTMVGVLPGLGPTSA IAILLPLTAVLPPTQAIIMLAGIYYGAMYGGSSTAILLNIPGEVASVPTCLDGYPMAQ QGRGGPALGIAAIGSFIAGIMGIIALTFFAPLFAEQALKFGPPEYFALMLLALTIVVS LGGASIGKALAMGFFGYLLSLIGLGTMTNMPRLTFGYTPLWGGLDVISVVIGLFAISE VLNGIEEKKIAISMGNIGSVFPGLKDLKQSIKSIFRGGALGFFMGLLPGCSPAVTTFL AYDLEKKCSKTPERFGKGAIEGVAAPESANNATSSAGFIPLFALGIPASPPLAVLLGG LMIYGLTPGPLLFEQNGDFVWAVIASMFIGNVMCLVLNLPLVGLWARLTQIPYGILAP IILLISIVGAYTVRNDMFDVLVALIFGVVGYFMNKFNWPVVPFIICFILGPMLERSLL QSFGMAFENPFIFFQRPISLTLLVATGIFLVVSLKLRRRTQSRIDNSGFEVK" gene 684724..685743 /locus_tag="Dhaf_0623" /db_xref="GeneID:7257590" CDS 684724..685743 /locus_tag="Dhaf_0623" /inference="protein motif:PFAM:PF03401" /note="PFAM: conserved hypothetical protein; KEGG: tle:Tlet_1456 uncharacterized protein UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457125.1" /db_xref="GI:219666690" /db_xref="InterPro:IPR005064" /db_xref="GeneID:7257590" /translation="MKKMNKKMTWLIGILILTLALAGCSSSAQGPSETAKEDPPYPTR QIELVVPAGPGGLTDLTARAVADYVSKKWNQPILVVNKPGAGNVTGLQYGLMQGKPDG YTVVADNIAASVLMVAGMKNPPIKLEDRIFVSKFVENPMCFSVAADSQFKDMKELVEW TKKSPEKLTHTSLSATSMNALTAAELCKAIGVDYKQTQPILVTSGSEGITMIAGGHAI LGDQSVQETYPLAAGGKLKVLAIAAKERSPLFPDVPTCQELGIDIDVTWYGGISAPKG TPDYIVKKWDETIAEMVKDQDFINKMNELHANISYLNTADYNASIKEQVERYTQLFDS IGVRQ" sig_peptide 684724..684810 /locus_tag="Dhaf_0623" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.856 at residue 29" gene 685971..687704 /locus_tag="Dhaf_0624" /db_xref="GeneID:7257591" CDS 685971..687704 /locus_tag="Dhaf_0624" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4161 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457126.1" /db_xref="GI:219666691" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7257591" /translation="MGWFINLKTSRKLLICFLLMALLILTVGITGLLNLGKVNANIKI ITQDGIQPILILEDLNKSFAKGAAELTGVVWKSQVAEDSAVVGDSRRVIAQAIEDGDL LLQQYQMLNLTDEEKELLGEFKREEAVYRDLREKALTAVALKSYALAGDFNQQAGLQQ AKVEGIIDQMIECSLAYNEELQRASEQDFAKAGMVIMILTACGFGLALLFSLLLGRMI SRPILAAVEQAELFAQGDFSTDQQRAFLGRKDEIGQLAQAYDEIDSNMSRLLEQVMAA AEDLKTVGGELSVSAEELNAQGQNINAGAEQIAAGMEETAASAQEMLASGTEISNGAG RLAGKAAEGSRIVQDIEQKAQLMRTNAEASRGATLSMYQHKQAEIIAAIQNGEVVQEI RIMAETIDGIAGQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSAQTVAGIHA VISKVTEAFGQLSRNSSDVLTFMEEKVIPDYESLVEAEEQHAQDARRIGTLVEDFAAT SEQMLAAIEQMSNAIQTVSASVQESTGSSQEIAHNMSQMAGVMEQVAKAAQSQAEHAM DLNAMVEKFKI" sig_peptide 685971..686093 /locus_tag="Dhaf_0624" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.609 at residue 41" gene 687997..690042 /locus_tag="Dhaf_0625" /db_xref="GeneID:7257592" CDS 687997..690042 /locus_tag="Dhaf_0625" /inference="protein motif:PFAM:PF01663" /note="PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cbe:Cbei_3330 type I phosphodiesterase/nucleotide pyrophosphatase" /codon_start=1 /transl_table=11 /product="type I phosphodiesterase/nucleotide pyrophosphatase" /protein_id="YP_002457127.1" /db_xref="GI:219666692" /db_xref="InterPro:IPR002591" /db_xref="GeneID:7257592" /translation="MKRKALTEKIAVIGVDGFEPRLAKKFLDQGKMPNLQKFIDRGSC RDDLVLLGAVPTVTPTLWTTLSTGAYPGTHGITCFFGHNHGQLDSLVYNLDSRRCKAE PLWNVYAEEANKKTLVWHWPGSSWPATSDSPNLHVVDGTQPQTINTGIAGIDISKIVV ASDKFTELQFLPNTSTITPGAGCIIENVEELMEDDGEVSYLRAAISSGAKVIKNIITC EEENEVNVLAKMIADSVKSPIKEAAGWAKAPAGAKEFTIILGKGLERRPVLLLQNEQG VYDTIQVYKSKKDAQPLVTLKAEQSAYDVVDTITNDDGEPVLGNRNYHALTISPDGSQ VTMLIGMAMDVSRDDLFHPKSLYKEVIDNIGYVPNRPVVNGANEILVDKVFIPTWDHY SQWQADCLTYFMKNNQYDIIFSHLHNVDNGGHLFWHFAKHQEMWKNNEEAYKVFIERM YIQTDNYIGRFLPYLDEGWTIIVTADHGLSCQENHGVELGEAGGITTPVMEELGYSKM LLDENGNRTHEFDWAHTKAVASRGNHIYLNLIGRDEHGIVDPKDQYDLETQIISDLYQ YRDHKTGKRVVALAMRNKDAVILGLSGPECGDIVYFKEETFNVIHADSLSTQNGYADT SLSPIFVAAGPGIKEGFKTERVIRQVDIAPTMAFLSGVRLPAQSEGSPVHQILTEEI" gene 690163..690492 /locus_tag="Dhaf_0626" /db_xref="GeneID:7257593" CDS 690163..690492 /locus_tag="Dhaf_0626" /inference="protein motif:PFAM:PF00085" /note="PFAM: glutaredoxin 2; Thioredoxin domain; KEGG: cbe:Cbei_3329 thioredoxin domain" /codon_start=1 /transl_table=11 /product="Thioredoxin domain protein" /protein_id="YP_002457128.1" /db_xref="GI:219666693" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR008554" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7257593" /translation="MSLQRLNAKSFEEIIYDQGSPCLVIFSRKTCHVCKGVVPILEEM QPDYEGKFGFYYVDVEEEQALYQRFSLKGVPQILFFKDGEFQGKLVGAVDDEKVSDKI MEVGEGE" gene 691103..691633 /locus_tag="Dhaf_0627" /db_xref="GeneID:7257594" CDS 691103..691633 /locus_tag="Dhaf_0627" /inference="similar to AA sequence:KEGG:PST_1420" /note="KEGG: psa:PST_1420 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457129.1" /db_xref="GI:219666694" /db_xref="GeneID:7257594" /translation="MASFLYREFIAENRRQIAEQELISHLEGFIELLNQGRDDFLFPR SGRKYLDDWANDEHCWLRKFYPPGQDEPYFDVTSLAQKAIEWLLSLRQQVFIGTESRL ITVFELLHQTVERSETDPNLRLAELERRKVEIEQEIIRVQKGQVERLDETQIKERFWQ AMTTAREILVDFRAVE" gene 692119..693558 /locus_tag="Dhaf_0628" /db_xref="GeneID:7257595" CDS 692119..693558 /locus_tag="Dhaf_0628" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457130.1" /db_xref="GI:219666695" /db_xref="GeneID:7257595" /translation="MRKAYDTFLLSEVSADLAAKAGSFEPYRYECAHCGEEVRLAAVG STSMVPHFRHRSGNSDIECEYYLGQFSAITDARSRKSKNERAEFYFDSNTKMFYLGLR FSEDEISAYEQLSTIFELRVASQAQPFYSLQINGRNFTSDMQRLIPLEKFSYSYFLSN TLNGVKRKYEVFNNVANNAATFFKMQVGDSDYRAKLVRSAVLYTNIPYFIAFQSQSHH WSPIDIRLPREIRVESTFKFETMGRKFLGKILTITAKTAQIDSLLFSWGYQLESSEKL TLLWPPAILSEDISIINADTAYLYSTFELQAHGNINVHSEDITKIVDGLTKIAVKPRI KVYKKNAELMLETCERETDTHINILVARTVEKNYRVPDDVSFLFNRSGVLLLSKGVTV QMTPDSEVRHYTNGYLDGIVAPSEQAMLVGESLLQDALIHYKRMETFNWADFKSLDLS QIAFQYIEDCEKSGLINSAAKHFIEEGRI" gene 693555..695141 /locus_tag="Dhaf_0629" /db_xref="GeneID:7257596" CDS 693555..695141 /locus_tag="Dhaf_0629" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: viral A-type inclusion protein, putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457131.1" /db_xref="GI:219666696" /db_xref="GeneID:7257596" /translation="MNYLLTMTEDEIRYVCSAIPLQDSVRYFKHYPKDFAKIMPGFRA TSLKKQEQVSGILFRSRNQYFISSFIEKHISQCLDEISAAINEKTEEGASKESALLQT LPHYFFMDNINLYFKLIGAEYAEEFLSMLSASVKIIKEAITEREHAKSRLDIKTSEVS RLEAELERVQTEQGKMSRKLSERLDEIKTLKRTNTDLEKSKGLISSHEQTIGDLKQKA QERDDYIQQLKIELSGAREEQHQLEKKIREELAKQQKTEKYRQDAAQKPKCPKDLDEF RDYLGYNFENIGVPTNSDYYPLLKDYLSEVLFQGKPIIISRSTGLSLIKCVSNTLVKT PAVSTLAFSDDITEKSIDNFLSQDKRIICLDNFIGNYNETVLITICDRHKDKIIFLTV AYDHTLCFVPDELMRYCHYLNLNRIEAFAGDIELTEAPSVVDEVETVVISIAPDARWS VALKEMFEEFGVRGALSVYKSSLVSDELSLCRLLAFDVLPYCTDVLKIAPFNVSERLV KYAGDSGRCFYKDLFRRWFA" gene 695138..696157 /locus_tag="Dhaf_0630" /db_xref="GeneID:7257597" CDS 695138..696157 /locus_tag="Dhaf_0630" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457132.1" /db_xref="GI:219666697" /db_xref="GeneID:7257597" /translation="MMNGLLTTMSNDMNIPRYLNESDKSFIYRLCYSALGQWCLSTAM NSTGGAVGTTKHNQTIVLNDLLSRYTELFPQISEKFIDTSSQQTNFSVSVRRTYEETG YLLTDSDNHNRIASYGRTIRVGDKFLFFGLPGKPCEVNGLGLFANSTDYLVALKDFLI RDSLTSEAYFDSRFDPIDFYQRDIDLSELEFFNPKSNNVPSMSWTKKPETDCTVARKT ETGPFYRIMKVTGEIQFADEPIELQTDSFTSYEYRRLYFALKTHYGNPLRATITKLDE LYSKIRIGGHLPNREYYLLLLLSWPEHSAFDKVNFIIRNELIAGVTDTLVDIGIEIKG GQPNA" gene 696150..701372 /locus_tag="Dhaf_0631" /db_xref="GeneID:7257598" CDS 696150..701372 /locus_tag="Dhaf_0631" /inference="protein motif:PFAM:PF00270" /note="PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: cpy:Cphy_0588 DEAD/DEAH box helicase domain-containing protein" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_002457133.1" /db_xref="GI:219666698" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7257598" /translation="MHNPNGVQAYYQAIRDRLKNYIKSDYLANSETLLRYVDDILGDL CSEYTNIAREPYIETAASYKKIQDGIRNSSQIEQGVKESLLKLVAKGLGIFSDPFEHQ VKALEYFLAGRDLFVSTGTGSGKTECFLWPIIAKSFEEAKNHPATFKNEAVRTLIIYP MNALVSDQLARFRKIIGSSDFKDIFTRDTHATRIPHFGMYTGRTPYSGDAKKTSSKEL AMTFRDNFLIDETADADTQRRQTNSIQGLKSINKYPARFGENGLRVFIENLEKNIHRP SPYDAEFITRFEMQNYPPDILITNYSMLEYMLMRQREANIWDKTKEWLEVSNKNKLLI VLDEAHMYRGSAGGEIALLLERLFYRLGIPVERVQFILTTASMPQNEQSAINDFYSGL TGKAASSCEFLFGSKEEIPDEQEIRTDIEALASIGSDQVQGDEITKRILDFASFVFNT TLPSDISQDSAQEWLYDNLPKYEAFVKLNRLCRDGAKSYSEIKEAVFGNVAASDKALD TLLVLVSLAAKGGNILFPVRLHMFLRGLQGLYACSNPKCTCAKYSESEGLPLGKVISI PKDKCECGGRIYELFNHIKCGALYIRAFVQKNEGQPYWYVFPQKGLDGDVNSLQELLL YVVPKQYQCGKNDKIGSLDPFTGKLYLTPQDDETLLDVVYYNKSEKGKKTDAKGMPFN FGVCPKCKKPMPLKKPVDLSTKGNIPFYNLTKAQFELQPPKSGLINQGKKVLLFSDSR QNAAKLALDLSKSSDADAFRQAIMLASLLLEIDGKEHSLADLYPAFLDVCNQNSLAFF SGTSKDKFDGDKRKFAKSKANAEKRGRTINYSSLLGDYGALPDNYYEQLLTFFTESPR SFKDIGIGFLAPLSTVLDLCMEYLEDDDISIDKTKLYQLLVLMFWDVMDDSAALGETI QDDVRKGLPGRSKNQTFGLSFDFSTSLDKGLLQRIQELLDLDSPTMVKIVDKVRDLFF ASSSTNRYYIKLSAVKIELADDNFVWYRCVKCGKLSPFKIGDYCGACFDSTDLVPIDE KELSRFDFWRIPVLNALKKIENIHTIDTEEHTAQLSHKEIRSDTWSRTEKYEMRFQDI NAGEHGEDAIDVLSCTTTMEVGIDIGSLTAVGLRNIPPMRENYQQRAGRAGRKNAGIS TIVTYASGGTHDSHYFQHPDEMISGAPRKPWIDRDNLKIKQRHVNMLTLNGFMSTEAM RTQFDGIVDIGIIEFCELYGENFIEYVEKFSKNSGLSTAKTIEHFREICGLVLAEGKR DEYINNDKETPAFDVFYREGFIPSYSFPKNVVRFFVEKESERGKSAPRDIQYAPERDI AVALSEYAPGRFVTIDKKIFKSGGIYANPRPRGFETNQAEFYFKNTDYYKDIFICSEC NWFGLQEDASLSQCPYCGSDIVKNKMLRPWGFSPVKGDEVKFEDEDEQYTYAEAPFYS YVPEDTRMDSFGQSKIRFANLPDRKVLTVNMGKSKNGFNVCKKCGGAEVTDAKGSARY LFSQPYHDNHPLCRHEGTVAHGIYLGYEFLTDMFMLDISYDSTRLVGNHSAEDKSILR AAVTTLHEALKKAVALVLDIDYNEISGGWRPRIKGDGNSHIEMFFYDNLTSGAGYSSL IGSILDKVLERARIILTECECSRSCKNCLDNYWNQRNHQMFDRYLGLQLLAYAQFGQL PDDYEVSEQDKYLRPLLKLITEDGGVPSAFEVIPALRKKPDNKQSKMYLNPYDLTDWL PNAFMTYRNLMSEG" gene 701374..702219 /locus_tag="Dhaf_0632" /db_xref="GeneID:7257599" CDS 701374..702219 /locus_tag="Dhaf_0632" /inference="protein motif:PFAM:PF02086" /note="PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cbt:CLH_2099 DNA-methyltransferase" /codon_start=1 /transl_table=11 /product="D12 class N6 adenine-specific DNA methyltransferase" /protein_id="YP_002457134.1" /db_xref="GI:219666699" /db_xref="InterPro:IPR002294" /db_xref="InterPro:IPR012327" /db_xref="GeneID:7257599" /translation="MAKSLSPLRYPGGKSKIYEKVKNLIVANGYEGRTYVEPFAGGFG IGIGLLCEGVVKAAILNDYDSHIYNFWYSLLNDTENLLRLISDTPITIEERERQKLNY RDADADSLRDGFATLFLNRVNFSGVIKGGPIGGLAQTGTYKVDCRFNKADISSKIETI AKLKGKIKLYNKDAGYLIRMSLMKMKAPMFLNIDPPYVIKGSQLYTNFFTEGDHLNLQ RVIVKYLDADYPWIITYDDCPLVRDLYKRFHLQEYGISHNAGGTVPGKEIVITNLPTD KFVWD" gene 702221..702907 /locus_tag="Dhaf_0633" /pseudo /db_xref="GeneID:7257600" gene 703050..707804 /locus_tag="Dhaf_0634" /db_xref="GeneID:7257601" CDS 703050..707804 /locus_tag="Dhaf_0634" /inference="similar to AA sequence:KEGG:Acid_1682" /note="KEGG: sus:Acid_1682 superfamily I DNA/RNA helicase" /codon_start=1 /transl_table=11 /product="superfamily I DNA/RNA helicase" /protein_id="YP_002457135.1" /db_xref="GI:219666700" /db_xref="GeneID:7257601" /translation="MNAQDETYFVALSKYRAKGADLLEQPYMSGVKTSVVEKYSDQAH FIYELLQNADDAGATSARFKLCDNELIFAHNGTRRFSISNPETEGPDTCNGKLGDINA ITSIANSNKTAASIGKFGVGFKAVFQYTQTPSIYDPEFRFKIERFIVPVKIYNDFTGR RPEETLFVFPFDHADRRHEEAYENISDKLRSLVYPVLFLTNLREISFECSKKFGLYTK SVDEEIAFDNTVARLITLTQNDGDENNPIENKLWLFTRMDEHDFTYSVGFLLNNEGKL RGSNYSAFCFFPTKEETGLNFIVHAPFLLTDSREGIKAGEEHNKDMINLLAALAADSI VGLKEIGRRNGIILIDDEIFDIVPYDESKFNDIKDKNKISFKPIYSAIKEKLSKEELL PSWDGFASAPNAYWASVPQIAELFSNDQLALLTGNKLAKWVFTSLGRQETVRSNKKLA EYMDSITEIWYEHEDIIRLITASFIEAQPIEWLHSFYQYITSGRIKLIKSKPIFLNQN NKAVAAFDSNGQAVLFLPSDEIEGYDTVNSALLENDATLEFIEQLGIKEPSLRDEIYN VILPLYQDRAAIDTSPHFHKFFKYYMECPQAEVDEYMKLIKDCEFIRYRSANDAKIYR GKANDLYLPEESLMKYFAAKPNTRFVELDKYKTLVGTSNEGHLESFLKKLGVETVPRV LRRELDPIEARQMPYNWHRSTGNEQWEEHYIDGCNEIIQEISDTNDADLSLLLWSQLL GIIKSECSSWRGFGDVINGIHYYFFRSFQKESFQSSDSFSLRTKPWLLNNAGGFVSAK ELTLKALSAKYSLTNDEARKLLLFLNIEEKEEGNDGLTDEQRAKIELADALSDIPPED LKRLAEQYRAQHQASSYHSEAAAGEEDEQGKNAVHPISTVSRVAKEITDRAVSAPKTR ESTNTDDSERTSTFDEDDYTKPSVDFSKKIEQAKQRSVDEINSIARLEELTQRALVSE KYSFGWFKAILELESLNSGENSANSREISIAFSRVEREPGTERTLILRHPSRYIPQSM EDLADIPLELHFANLHMIKVAVEVVNVKSYTLRAKLKTKAQIDGVDLSLVTEAKIVAK NPVFLWEELRKQFNRLDFDEDFNMQTNLCENIEFVFGPPGTGKTTYLAREIILPIMQK ANALKVLVLTPTNKSADVLVRRLMEVMGVDHSYNDWLVRFGATNDTIIEQSGIFRDKT FDIRTFSRNVTVTTIARFPYDYFLPDENTRLHLNALKWDYIIIDEASMIPLVNIIYPL YKKTPEKFIIAGDPFQIEPITTVDIWKNENIYTMVQLNSFTKPSTVPHQYLVKLLTTQ FRSIPEIGEVFSHFAYGGVLQHNRASGSERVLLADDILDIKPLNIIKFPVSKYESIYR PKRLQGRSNYQVYSALFAFEFIKYLSSLGALASGDELCRIGLIAPYRAQSDLVDKLMA SVTLPKNIDVQVGTIHGFQGDECDVIIALFNPPPSILASREMFLNKLNIINVSISRAR DYLFIIMPDDDTENVRDLTLIKRIEALCKEQLGWTEQHAHSIEESILGSESYLEDNSF STSHQLVNVYRRPEKRYEVRSEDNAVDVQIHE" gene 707951..708622 /locus_tag="Dhaf_0635" /db_xref="GeneID:7257602" CDS 707951..708622 /locus_tag="Dhaf_0635" /inference="similar to AA sequence:KEGG:NE2436" /note="KEGG: neu:NE2436 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457136.1" /db_xref="GI:219666701" /db_xref="GeneID:7257602" /translation="MENNQYQDDKPTLLKAIEIILAKPEDIVKEVRVMEDKYYGKYEG KKTKGEIQKIIADHIISNYSYFTAFAGGATALTGVIPGLGTVIATLGGASADVALTMK WQIEMTMAIAVVYGHDITIEEEKRLCFIIAGMGVINEAAKEGGKAIGSKAFIKMTQEY LKGATLQAVKEIFKKVGITFTRKAAEKAIPFGVGVIIGFSANKGLTCYVGSKALDFFK EYEVA" gene 708963..709190 /locus_tag="Dhaf_0636" /db_xref="GeneID:7257603" CDS 708963..709190 /locus_tag="Dhaf_0636" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cth:Cthe_1655 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457137.1" /db_xref="GI:219666702" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257603" /translation="MAISYNKLWKLLIDKGMNKQELKQLSGISTTSIAKLGKGENITT DVLLKICKALNCDIADIMEVVPDPLAGKVSE" gene 709261..712767 /locus_tag="Dhaf_0637" /db_xref="GeneID:7257604" CDS 709261..712767 /locus_tag="Dhaf_0637" /inference="protein motif:PFAM:PF00271" /note="PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ava:Ava_2189 type III restriction enzyme, res subunit" /codon_start=1 /transl_table=11 /product="helicase domain protein" /protein_id="YP_002457138.1" /db_xref="GI:219666703" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7257604" /translation="MARLEDITVGSSVIGIAGNQSVSVVAVKWYGNAVLEITFKDVKG QLASQLLYREDEERLNIAHNGLLWSFDADANLLRLTSEAYRINLAHIFDPYLAVHTSA IEPLPHQISAVYQEMLSRLPLRYILADDPGAGKTIMTGLFLKELLMRGDLKRCMIVSP GNLAEQWQDELYRKFSLRFEILSNDRIESAVTGNVFTEANLCIVRLDKLSRNEEIQEK LRVTDWDLIVVDEAHKMSATVWGGEIKYTKRFQLGRLLSSITRHFLLLTATPHNGKEE DFQLFMSLIDQDRFEGVARSGNQAVDVSDVMRRLVKEELLKFDGLPLFPERIAYTVNY DLSLLEAKLYGAVTEYVQEEFNRADQLNNERKTTVGFALTILQRRLASSPEAIYQSLK RRRERLESRLAEERLGKRASEYSVPTYDDYDDDDLPSAELEDTEEKVVDQATAAQTIQ ELEAEIATLKKLERMANDVRQSGEDRKWDELSRLLQDNDTMFGTDGLREKLIIFTEHR DTLRYLTDKIRSLLGNEEAVVTIHGGLLRDERRKVEELFKQDKEVRILIATDAAGEGI NLQRAHLMVNYDLPWNPNRLEQRFGRIHRIGQTEVCHLWNLVSKETREGMVFQRLFEK LEQEREALKGKVFDVLGKVSFDNKSLKDLILEAVRYGNDPAVRARLYEVVDHSLDHAE LERLLDEHALTEDTMDVRQVMAIREDMERMEAHKLQPHFIESFFIEAFTSVGGKIRPR EKGRYEITSVPFAVRNRDMQIGCGEPVLQRYERVCFDKPYTNIQGQVPAALIAPGHPL LEATIDLVRERNMDVLKRGAVFIDDTDFGTEARLLFYVEDSVQDGVILPSGGKRIISK HIHFVEIREDGMASNAGYAPYLDYRAAKDDEQAAIRSFLSTQQWLQSNVEDIAVGYAI SEIIPAHVSEVRERKIKLIDKTAKAVKERLTAEIQYWDFRSADLKMKEQAGKVNAKQN SQVAARRAEELEARMQKRLAELEAEKLISAMPPVVVGGALVIPRGLLNKLTGKPDTFT ADALARRTIELAAMKAVMYIETSLGFIPRDVSASKCGYDVESQIPQDKRGADGHTLRF IEVKGRASGADTVTVSKNEILTAFNKPDEYILAIVEVDGANTKTVYLKKPFHERPDFA ATSVNYSIAKLVNGAEITLQRG" gene 712770..715490 /locus_tag="Dhaf_0638" /db_xref="GeneID:7257605" CDS 712770..715490 /locus_tag="Dhaf_0638" /inference="protein motif:PFAM:PF06634" /note="PFAM: protein of unknown function DUF1156; KEGG: cpb:Cphamn1_2496 protein of unknown function DUF1156" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1156" /protein_id="YP_002457139.1" /db_xref="GI:219666704" /db_xref="InterPro:IPR009537" /db_xref="GeneID:7257605" /translation="MEYKKKLIEVALPLEAINKESAREKSIRHGHPSTLHLWWARRPL AAARAVIWASLVDDPSSHPEEFPTEDEQTKERQRLFVILEKLVKWENTNNQDVLDEAK AEIMKSTDGNPPALLDPFAGGGAIPLEAQRLGLEAHASDLNPVAVMINKAMIEIPPKF AGQPPVNPDAHVSKMKDTTAWLGTSGLAEDVRYYGEWMKKKAFERIGHLYPKIKDEHG DEHTVIAWIWARTVKCLNPACGCEMPLASSFELSKKKGKEAYVQPIIEGKTIRYEVKY GKGAPEPPKTARGAKFKCIRCGESTTPEYIKDEAKAGRMGATLMAIVAESNNGRLYLS PNEEHITIANVEKPDEYPSQELPYDPRNIWCPAYGLDTFDKLFTNRQLTALTTFSDLI SSVREEVIQQGSSQEYAEALCVYLAFAVDREADVSSSVSTWINTIGAIRNTFARQAIP MAWDFVEANLFSDSTGCFSNMLNWIVNCVRILPCGKTGTVRQFDAQSDNGLKNVMVST DPPYYDNISYANLSDFFYVWLRKALRDITPDLFRTMLVPKTEELIATQYRFDGSTDKA RNFFENGMLDAFRRINSYVSESVPVTVYYAFKQNDNDGNDATASTGWETMLSAIIKAG FSITGTWPMRTEREVRTIASGTNALASSIVLVCRKRPAGAPICTRRDFINTLKRELKP ALQKLQASNIAPVDLAQSAIGPGMGVYSRFSKVLEADGTPMSVRSALQIINQELDLYF TEQDGELDRDSRFCVDLYTQYAFNDVKFGEADVLARAKNTSVEKLAGRGVLYAQKGVV RLHTREEIPEKIESRDSIIWLLTQQLTHAMEKDGVVGASKIVADIFTSDPEHAKALAY RLFQIAERKGWAAEAYAYNSLVIAWPEVQSKAADMQAARYTVNQMILFDN" gene 715518..718931 /locus_tag="Dhaf_0639" /db_xref="GeneID:7257606" CDS 715518..718931 /locus_tag="Dhaf_0639" /inference="similar to AA sequence:KEGG:Ava_2192" /note="KEGG: ava:Ava_2192 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457140.1" /db_xref="GI:219666705" /db_xref="GeneID:7257606" /translation="MENNHVQVSQGFRILLGAFAPYIARELSNEFGKDWWNVAVLDTL YDDQKRDLPYSGDWAKLVDSLDIARCLLLFDLHWQRVLRKKLSIDHRTWAKELVGVRN KLAHLGGEDFSSDDTWRALDTMSRLADQIDPESAEEIRGLLRTSRYGSADGSTTVTEV LAAPAPGKQKNAGILNTTPISGLPSWRDIIEPHPDVAQGRYKNAEFAADLAQVARGEG AFEYRDPVEFFARTYVTEGMTGLLEQALRRVCGKDGEPVIQLKTAFGGGKTHSMLALY HMMRGRVSVDKIPNVKSVLQRAGVSSLPKANVAVLVGTALDPTKSKRPNNMPGITINT LWGEMGAQLAESSGNAKLYDYVKEADKKGVSPGSEALKNLFDAAAPCLILMDELVAYA KKIYGANGLPAGTFDNFISFIQEVTEAARASKNSLVVASIPESDIEIGGEAGKIALET IEHTFGRMESIWKPVAANEGFEVVRRRLFLDCKNPDGRDAVCAKFSQMYSENTSDFPL ESREVEYRERMISCYPIHPEVFDRLYEDWATLERFQRTRGVLRLMAAVIHELWMGNDA SLMIMPGSIPLDVPNVRDELTRHLSEGWNALVDREVDGKNSIPYLKDQSNQRYGRKLA SRRVARTVMLGSAPTSRNQNVRGIEASRIRLGVIQPGENIADFNDALNTLTSALAYLY TNPSGDRFWYDTRPTLRKTVEDRATQVAASDVEYEIETRLRSLRKEQPFGGIHIYQSS SLDVPDDQTTRLVILRPVDEYKAANPNNTAMTAVTDILNNRGNTPRIYRNMLAFIAPD QDLMSSLKQAVRLYIAWKSIKDDSEDLNLDAAQNRETDNNLRRSNETVDARIKEAYCW LLVPYIDKNADMKTIVWDTIRISGGNEGIITKAAKKMLQNEAIITQWAPALLLMELDN VLWKDADNIPIKKLWEYLCTYCYLPRLANDTVLDRAIQTGLNSPEYFAFASGFDGTRY IDLKFNQYVGMIERSGYLVKVSVAQKQLADEEAKRQAEAAARAAQLGGGASIPISVDG GTSTTTTYPVGGGVPAGSHEVYEDQTPAAPKNKRFFMSADLDTTRINRDVQKYVEEII QHLTSVDGARVRVSLEVEAETADSFTQQTVRTISENCRTLRVRDSGFEE" gene 718958..720763 /locus_tag="Dhaf_0640" /db_xref="GeneID:7257607" CDS 718958..720763 /locus_tag="Dhaf_0640" /inference="protein motif:COG:COG3593" /note="KEGG: pmo:Pmob_0421 hypothetical protein" /codon_start=1 /transl_table=11 /product="ATP-dependent endonuclease of the OLD family-like protein" /protein_id="YP_002457141.1" /db_xref="GI:219666706" /db_xref="GeneID:7257607" /translation="MRIFCVKVSNYRNIDGITVIFHPDCNYIIGENNLGKSNFLSLIG TVCAGKGFDEKDFADPDKAIEVELDIKLLQNEQGFFGDNFSPEDASLLKIRYRQTIKE AYPTIVSVDSNESIQARLLRKINFLKYETTAVPSRELRLDSQKGAGLLINGIIERFIA DGEPAFLNDEQIGGLMKFINEHLGKIRSFHDYSIKATIAPNPTEMLTSLFYLSDGYRK IDTTGSGVQYMAMASINILCQIMELYKSKSSPFGEQLYTDDDGRKLLPLVLSIDEPEV HLHPYLQRSLIGYYKKILCNEDVKFVELLKSCFGVDGLDGQLVIVTHSTDALVGDYRN LIRFHKNGDRTAVISGYALRPIEGANNEGRIKSENEKHLIMHFPEIKEAFYSKCAVLI EGETEYGCIHAFADKIGVALDDCGICVINAKGEKSIKPLRQLLTLFAIPSIAIYDGDV REGHTAAADEFFTNESCYEIEIVKSLYSQNKQDIVKQIAKELDSQYATVPLDFDFVSK HFKKMGIELYSQKTCENCGHTKKVKDASGYTPRSLADVDDNDEEDFCRMYSAWFMAKK GVLLGRIVGESLPVELIPACYSDAIKKAQEVASHV" gene 720756..722564 /locus_tag="Dhaf_0641" /db_xref="GeneID:7257608" CDS 720756..722564 /locus_tag="Dhaf_0641" /inference="protein motif:PFAM:PF00580" /note="PFAM: UvrD/REP helicase; KEGG: UvrD/REP helicase family protein" /codon_start=1 /transl_table=11 /product="UvrD/REP helicase" /protein_id="YP_002457142.1" /db_xref="GI:219666707" /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR014016" /db_xref="GeneID:7257608" /translation="MSDANLAEIKGKISSQHEGDEKQLEVIFSGSHRLIVEAPAGYGK TTTMISRIAYLFASGGIPNPKRILGLTFSVNAALKVKREVAEKLPALLGTQNSPIAIS EKVTVTNYHGFCKGVIKKYGFLIADALRKDVNLFRTVSDSEIERQATLKTALSADEYE ELKSVEIAVKEAHVPDSQTIQGYNEIVIKKLLPLGYITHNAVILFVLEMFDRFAEVKK FYQSYYPLIVVDEFQDTNCIAWNLLEAIISERTQLIFLGDPLQRIYGFIGALPDIMTT VADKYGMTKVALSKNYRFRNNSEMLKLDRNIRANAATCFEPNIQDDDVARVPAFWGST QQEEARQVVAKVQGLMGDGTDKITILFRGRGRNAEIVETELADKKVPYFYGMFTDEDA DYVDFHNKCQEMFIKRFGKSKNINKKALTAFSDRVKTAYASATGKTVDSLLRLLDALV EKVSIDYSDLLADDKYNLLLDIFENRQLKQAMEYVDSQVILSTVHGAKGLEWDYVVLC DVEQWVFTFLCRDCPSLRASGNSTACRLPQSIPDQMLNPLLDDLCVFYVGLTRARKQA FISASGERFNARGQRFTNGKVCCLALVQGVKLLQHT" gene 722646..723953 /locus_tag="Dhaf_0642" /db_xref="GeneID:7257609" CDS 722646..723953 /locus_tag="Dhaf_0642" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: rrs:RoseRS_2284 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457143.1" /db_xref="GI:219666708" /db_xref="GeneID:7257609" /translation="MNSILSNPKRDTSSKNGKAGFYDYYASFSPSFVRDTLSFLDLKK DSRILDPWNGSGTTTQVAQEMGYSTIGYDINPVMVIVAKSKKTDPDLAVSLHTLCLEI INKAKRYRKVSQTDHEPLETWFYPETAGVIRKLERAIQHLLISETYSLLLAGAALKPI SSLAAFFYVALFRSLRDLANPFFCTNPTWIKKPKQKEERVLAPADLIYHLFQHYVQEM ANLLGQSQRINSRCASKSILALADSQEIPLPNESIQAVISSPPYCTRIDYTVATSLEL ALLGCAKQTDVKRLREKTIGSPVIRKEDLIIQENWGAVCLDTLEKIRLHAAKASQSYY YKTYTQYFTSVYQSLQEISRVLRNDGSCVLVVQDSYYKDIHVNLAAIIEQMGQTLTWQ LALQEDFPTKQNMAGLNSRSAHYRKTTMATESVLIFNKKGGGV" gene 723953..725077 /locus_tag="Dhaf_0643" /db_xref="GeneID:7257610" CDS 723953..725077 /locus_tag="Dhaf_0643" /inference="protein motif:PFAM:PF03235" /note="PFAM: protein of unknown function DUF262; KEGG: pca:Pcar_0794 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF262" /protein_id="YP_002457144.1" /db_xref="GI:219666709" /db_xref="InterPro:IPR004919" /db_xref="GeneID:7257610" /translation="MDGGIDLIKAVDQKIEKVRTRSLDLSFNELLDMYENQELVIDPE YQRLFRWSEGSQSRFIESLLLEMPVPPIFVIERSEGVYELIDGLQRISSYLHFRGKHP LRTNDDGSFHHLVLSDCDIVEELNGISYENLPKPLEIKLKRNFIRVEILRKESDQRLR YYMFKRLNTGGEKLSAQEIRNCTIRLLNDDFNKFIMQMSNNPDFQQCISNISDDKKEQ KYDQELVLRYFAYKNYRAKYVHDVGDFITEYMEDVSDPQKTEVMFNYEDEKLNFEKTF KLLNRVLGEYVFSGTNDKGNLINRFLTYHYEAFSIGIQPYLEKIDVEDSDMIGRLRKA FTEIKNDKEFKRITTGGGKNYSSPLNNRIDFVSRKVAEQL" gene 725074..725760 /locus_tag="Dhaf_0644" /db_xref="GeneID:7257611" CDS 725074..725760 /locus_tag="Dhaf_0644" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pcr:Pcryo_2512 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457145.1" /db_xref="GI:219666710" /db_xref="GeneID:7257611" /translation="MNIVDIRAQMEEELTWRQNEIRFLRNQLSYISADQDKKRYRKSL VVMLYAHFEGFCKTVLLIYVDAINHLRIKRNEANPYIKTASLADVFKAYANLDKKCAL FKHALPQDEKLHLFSRQVDFVNMIDALWQETAEIPESVIDTESNLKPVVLRKILFRLG FPYDCFAGYEGKINFLLEKRNSIAHGSGKEGLEEKEYSEVETASFAVMEKILKLVIEA LENKTYLSVV" gene 725809..726873 /locus_tag="Dhaf_0645" /db_xref="GeneID:7257612" CDS 725809..726873 /locus_tag="Dhaf_0645" /inference="similar to AA sequence:KEGG:BALH_0834" /note="KEGG: btl:BALH_0834 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457146.1" /db_xref="GI:219666711" /db_xref="GeneID:7257612" /translation="MDLAQKSLLNIIQGLRGWSRDWKRIPKEMYLGHLQFSQVALNEG IIPPGNLYDLLAMLQKPCQEWGIPAFEASFDLDASILKKYGGLSYEAEEFLEEHVSVE ESEARVMLEILSHCREKVKEANNYQELYSKIREFISSPEHAVLPSGEVYDFAHSLQDK KLSDLFFSLYEPSPLPYEEYYYCPYCGWTLTTQRGKNRCTNRSCHLNGEFRNPVKMPN ASRDVLWRLTPGIQRYVLVPGIAELKLYKRLETKKYDVQLYPEIDRYDIRVKLENSIV DIDVKEYYSIRSLADHINANWQKYHENSYIVIPGHVLREKPYFIERVANYLSPEAYRH INIIPESKVLSVLERGVDGQ" gene 726870..729947 /locus_tag="Dhaf_0646" /db_xref="GeneID:7257613" CDS 726870..729947 /locus_tag="Dhaf_0646" /inference="similar to AA sequence:KEGG:BALH_0835" /note="KEGG: btl:BALH_0835 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457147.1" /db_xref="GI:219666712" /db_xref="InterPro:IPR001698" /db_xref="GeneID:7257613" /translation="MRQGYRDLTKGIKKALNDVLQNGGNRSNFRYITDLIIRVELMLT GFNLATAHNKAEEAWSLIPGYDFWKIAEPANFGIIGRMRILFGFYRAESLWIKDLEEY GKLDAAYRLYCLMDNGLYKEVPPRYVSDRKSEYYNILMNPIPHKRHSLPFITAGVFNY QVFIDEKRNVQGNIPVIQTEQVVFPKQRSKKSLTCDFNRDWLGLPEEMEHIQKGWLKR ANSFELASLKQSMCLNYRGVNHLAGGLGTGKSTFRVMETYRLVKKHQAKVGMLEGTVA EVVKRVKELNSLGINAVPLIGPSRRKKHLDTYLFSHAKEVDDLSGWINEEHRALSHLS GICFIQALSENFEDDKSFPCQKIVQDNKPAQCSFAASCGIYADFRKAIEADVWVTTSA AVLKTRLPGMLDPYERTVFEVMYDLLDVVFVDEADYVQEQFDRTFLEEYELFGAPNHL LEQLESELTAKINGRYSDVAGNPIILNFRRQLKEMIDIVWQIFELLNNSPRLRKHLAY RKVFHIYALAHDLTDKLAKGSESSDKIWAELRGYISDPFAEGKFTAVANQLLALNRTK FKEELLEPFVASFFEGVKSKLDRSLLSLQLELFLYLGRFEDHLKSILQYADIVFEELN ISSSLGKVFNMRKEFSPFMKEGMTGMMVGYRYFAKESSLGTFKFFEYSGVGRLLLKEW SDLYDQTDGIQGPGVVFLSGTSVAPGSRHYELNSPVDWLMKTRTTMGKIEQFYHPLAD PETGELIFVSGTNPEKRGEHLEKEVRLLKPLIKREIEHWYKERKILLVVNSYDDLERV AGVLSLDPEWKDNFKILSRGDQAEEEAEGLSFYFPLANIEQFVHESAEILVAPLLAMN RGHNILDDRQGALFGTVFFLIRPYPVPDNLGYMIQALHAQLPNILETIEQKSLVGGKA IKELRKNSILLLETMVRKPDFWSILSPKERKALAWFILVPVWQMIGRLLRGGRDARVF YIDAKFGMEGTTGTGTIPSLLSYWRTMLEAHQGDKVIQSLYGSFLDSLPRITK" gene 729966..732530 /locus_tag="Dhaf_0647" /db_xref="GeneID:7257614" CDS 729966..732530 /locus_tag="Dhaf_0647" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: btl:BALH_0836 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457148.1" /db_xref="GI:219666713" /db_xref="GeneID:7257614" /translation="MAHYLQLNAFELGENTIPQIPLYQMEFPHEWTVLLKGIMDGYHS PVKLTDLRAKLQMLFPQILGGYDNLLTEGQAYPWLIATEPIQEVWLERLTRNWLKNEL LKKQKYGAKAAEISPVNLNWERYNLPIQWDNCVRYQVIPGLFTHAFCQEIRYLNLPGG VDIPLKFVQVFYGKKHECMSLPFLNNQPQFSYIIHFDVTNRGGEADRLLLNVRIGMRR FHTAPVLANENPYELLNKKGTLLLGMSNPFVLTDTSLTVLSTLKFRRAKDSSALAQWV SAEEDLFFDVLKENLSIDQFLASPLSYWSESGKVKGYLVHSSQVYQNEPDVKTGLGLP ERTALLDLVSRTFNLKARLDFLEKVSCGGRLKHLPIKAPERTFINLELWMSPDMYKEC VELLAQIQFDNSNGGRLLWPTDKPDEFILNANPEVVVALQHRDDAFLTQELDPEGLRE QRVSEIKKRVTVAERDKLTLALIEIGEKKSYKKLDPKAAVRSGLAKTGRMTQFMYKLN HELNGRRRSKEDEEKSIMKTNLGIVTNAFLDLLADAGFVRANIPLIAEGEHIVVTGII KRKVRLNSRRTNTEYLPVLLWFDGREIKVKRLGETLWLPMHKALLDFSKTRPFDNMWK ESSQRFINWLEQEIESILLSTSEVPIYLFADAGLRQYWWKNLQNPIITSRDLPFTKRI IDEERLKFVRLNRTDDVPQYEIFDTNKNSSLNRYKGLFRDGEIYYSVGSKPDTIRAKL EITKYNTPREIILKQQAVEILPTGVKDQEEAAQLAQRAHLLREGNLTYARSTAQPFPL HLLKSLSKYWEAENARAIEDEDEQGNLEYDSYGNDFEEGIKSSIRRRCGQILRFKR" gene 732627..733649 /locus_tag="Dhaf_0648" /db_xref="GeneID:7257615" CDS 732627..733649 /locus_tag="Dhaf_0648" /inference="protein motif:SMART:SM00382" /note="SMART: AAA ATPase; KEGG: hmo:HM1_0414 hypothetical protein" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_002457149.1" /db_xref="GI:219666714" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7257615" /translation="MALKKICLENFTVFDKMEIEFCDGVNVLIGENGTGKTHIMKLLY AACQSAHASKKVISFPQKIVQVFKPDHANISRLLSRKAGNGSAKVHVISGNNTLKTSF NLKTKNWDAEVVGAQAWEKQLSNLTSTFIPAKEILSNSKNLVNAINVGNVDFDDTYKD IISVASVDINRGPNNVQKEKYLQILQDITDGKVSYENEEFYLLPGNQAKLEFQLVAEG MRKIALLWQLIKNGTLEQGTVLFWDEPEANINPKHIPALVEVLLNLQGDGVQIFIATH DYVLAKYLEIRMADANKIRFHSLYKKEGRVEVESNHNFKDLVNNSIAEAYNKLLDEVF EQTTKG" gene 733649..734167 /locus_tag="Dhaf_0649" /db_xref="GeneID:7257616" CDS 733649..734167 /locus_tag="Dhaf_0649" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: rsq:Rsph17025_3732 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457150.1" /db_xref="GI:219666715" /db_xref="GeneID:7257616" /translation="MKLPGEIYIEENGVFQLDCSAALWSTDQIHTLYHAAGTFLCDAD FVAETEKFLVLIEYKNASIPNAANPDRFKPSSPQKIDNIARKFYDSLHYLTLEAKNKP LRYVYIVEYPQAGVTERKMLRNAIANKLPFKMQQGRQRKLVDDFEVLSISEWNEHAEY AVFPLTPVYPFS" gene 734271..734603 /locus_tag="Dhaf_0650" /db_xref="GeneID:7257617" CDS 734271..734603 /locus_tag="Dhaf_0650" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_1574 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457151.1" /db_xref="GI:219666716" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257617" /translation="MSDFGNTLKNLRKQHKITQRDLAERVGVDFTYISKIETGAIANP PSEKTIIQIAKVLGTNADELILLAKKVPETIRETIVDDDLAAAFLRKVPRFSEEQRKI IKDLIDEV" gene 734607..735254 /locus_tag="Dhaf_0651" /db_xref="GeneID:7257618" CDS 734607..735254 /locus_tag="Dhaf_0651" /inference="similar to AA sequence:KEGG:cce_0909" /note="KEGG: cyt:cce_0909 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457152.1" /db_xref="GI:219666717" /db_xref="GeneID:7257618" /translation="MRRPYITNDEMDIIAESVLSQAGLSTEWQGAVVKVDIDTLIEFE YGLEIVWQNIDYLSEDGIVLAAIMPKRKQICMNETKMELFMSKMGTMNFSKAHELGHW ILHVLEQQDYEQLSFDDSEAYFCRGGSKRPPEEVQADMFAASLLMPRKIVTGAVNRLK ERGKVDFPDLYRLKDDFEVSISALTNRVQQLGLLYIANQKVYMSQAEAIGQMSLF" gene 735316..735978 /locus_tag="Dhaf_0652" /db_xref="GeneID:7257619" CDS 735316..735978 /locus_tag="Dhaf_0652" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: spv:SPH_0095 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457153.1" /db_xref="GI:219666718" /db_xref="GeneID:7257619" /translation="MNNSKFTSEVLRQDPSLLRNSYPTSGKWDMPIIKKSEVDITGVK LIRADHIRRKDNRAVADKTVHFFVEDNKLDRYYDNPENYRLRLAQYAHVLTPDYSLYI DMPLSIQIYNTFRSRYCGADWQDYGLSVIPTVSWSTSESYDFCFDGIELGSVVAVSTV GGLRNNKLSKEEFKKLFLEGYWEMKRRINPRQVLCYGTAFCEMGEEVISVPYFETIRR GK" gene 735978..736319 /locus_tag="Dhaf_0653" /db_xref="GeneID:7257620" CDS 735978..736319 /locus_tag="Dhaf_0653" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: eca:ECA1669A hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457154.1" /db_xref="GI:219666719" /db_xref="GeneID:7257620" /translation="MGGRGLHSGVVARQTTIYDQIERQEIADIIQESKRQREALADGG GGGITPPSLFKKCACCGEYTIPVKTKYETCLTCGWIDDPYQNGHPESLDGKNPLSLKQ AREEFRARRLG" gene 736471..737097 /locus_tag="Dhaf_0654" /db_xref="GeneID:7257621" CDS 736471..737097 /locus_tag="Dhaf_0654" /inference="protein motif:PFAM:PF06571" /note="PFAM: protein of unknown function DUF1130; KEGG: cpe:CPE1000 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1130" /protein_id="YP_002457155.1" /db_xref="GI:219666720" /db_xref="InterPro:IPR010556" /db_xref="GeneID:7257621" /translation="MPRLYTVGHSLHSIEQFNKLLNSQAINCVIDVRSTPYSKYSPQF NTNELRKFLSINHKSYIFMGEEFGARRSESSLYDIDGLLDFEKVIRSALFQAGVKRVK SGLNKGYKIAFMCTEKDPLDCHRSILVGRAFQDEAFEVLNIHEDGSVENQKSLEERLL DLYFPDRNQTSIFDILEGGKSKDELVVEAYRLRNKEIGYKIGNEAGII" gene 737672..737839 /locus_tag="Dhaf_0655" /db_xref="GeneID:7257622" CDS 737672..737839 /locus_tag="Dhaf_0655" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457156.1" /db_xref="GI:219666721" /db_xref="GeneID:7257622" /translation="MTDYKKMYFQLAAKVADAMDLLLKAQQEGETEFMDGEPFPESKA VVIQDEGCDYD" gene complement(738182..738397) /locus_tag="Dhaf_0656" /db_xref="GeneID:7257623" CDS complement(738182..738397) /locus_tag="Dhaf_0656" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: lwe:lwe0290 transcriptional repressor, putative" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457157.1" /db_xref="GI:219666722" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257623" /translation="MMYQRLRDLREDRDLTQQDLADLLKVSQATYSRYESGALDIPST SLIKLARFYKTSVDYLLGLTNDRKPSR" gene 738500..738706 /locus_tag="Dhaf_0657" /db_xref="GeneID:7257624" CDS 738500..738706 /locus_tag="Dhaf_0657" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457158.1" /db_xref="GI:219666723" /db_xref="GeneID:7257624" /translation="MANYSEMYHILFNKITDIIEELQDIQRQTEEMYLQCQKHETIAL QVYNINQSKHVGDTVKNTEKRPLR" gene 739115..739717 /locus_tag="Dhaf_0658" /db_xref="GeneID:7257625" CDS 739115..739717 /locus_tag="Dhaf_0658" /inference="similar to AA sequence:KEGG:BCE_3021" /note="KEGG: bca:BCE_3021 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457159.1" /db_xref="GI:219666724" /db_xref="GeneID:7257625" /translation="MNAMPFHPPTDYYCQELAPLDEEICSLLAKRKELSNQNPGFPDP DLIAQWSKAFGLKEYWLCLVFSHLLSEKQIHIPVEPVEFLKFIPVLRSVTVDKLSHTV TYLKQYSNASIVYIETEVITSEPFGGHLGHAMFELSIAPEYLCTPNGGGGSGKTMQHS FVVTPPLPDDVSEVEFHFKVKPLPEPEFQRVLLKEIAVTI" gene complement(739919..740158) /locus_tag="Dhaf_0659" /db_xref="GeneID:7257626" CDS complement(739919..740158) /locus_tag="Dhaf_0659" /inference="similar to AA sequence:KEGG:PTH_0422" /note="KEGG: pth:PTH_0422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457160.1" /db_xref="GI:219666725" /db_xref="GeneID:7257626" /translation="MAISTNKILRLSFSTAGGKTFTLSILNPREDLSQAEILSVMDRM IEEDILMTTSGALTGVKDIKVVSTVVNDLFDPVQP" gene complement(740195..740419) /locus_tag="Dhaf_0660" /db_xref="GeneID:7257627" CDS complement(740195..740419) /locus_tag="Dhaf_0660" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: dth:DICTH_0366 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002457161.1" /db_xref="GI:219666726" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7257627" /translation="MAIVSEPLNSALVVVYQDGYTPAGAPVSRQKSISYVRPDASEEA LYEIAQALFSLSLHPVLDVQLKKNFRLKEE" gene complement(740658..741776) /locus_tag="Dhaf_0661" /db_xref="GeneID:7257628" CDS complement(740658..741776) /locus_tag="Dhaf_0661" /inference="similar to AA sequence:KEGG:CA_P0013" /note="KEGG: cac:CA_P0013 FAD dependent dehydrogenase" /codon_start=1 /transl_table=11 /product="FAD dependent dehydrogenase" /protein_id="YP_002457162.1" /db_xref="GI:219666727" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257628" /translation="MKVAIIGAGMAGLSCAITLEKHGITPFIFEKRAGVGDRFVNAES MFHILNRPVKNCVPYLREKFGIRLDPLTKVSRIEIHSKHEKGVISGDIGYLNIRGRHE DSYDRQLRDQVSAPIEYHSEQEYETLCKGFDAVVLATGDAEYACRLGNFRADFTGSVR GATVTGSFQADTPHVWFDCDVLPKGYGWVIPYSDQEANVVMFSPDYPSNIKRDHEEMW NQFYGMVSQDLHQPFRMTDQFSFKHYIVGICNQPKLENTYFTGNCFGAVSPGFGFGQF TSILSGVYSAYDICGLGDYAELTKPLRANYENSLILRRFLENMTNEDFDFVAKNINMK LISRFVNNLCDSEGRMDLLKDVTPLMKLFNRLQEGKNR" gene complement(741779..743236) /locus_tag="Dhaf_0662" /db_xref="GeneID:7257629" CDS complement(741779..743236) /locus_tag="Dhaf_0662" /inference="protein motif:PFAM:PF03323" /note="PFAM: GerA spore germination protein; KEGG: mta:Moth_2042 GerA spore germination protein" /codon_start=1 /transl_table=11 /product="GerA spore germination protein" /protein_id="YP_002457163.1" /db_xref="GI:219666728" /db_xref="InterPro:IPR004995" /db_xref="GeneID:7257629" /translation="MTKSAIHPIDIDKISTRLSGISARVVPCTGGDAITVLFIRQLTD RALLSECILKPLIARAAAGKTPPAEELRDRVLYVDHCALDDNPDAIDAYLLDGYTVLL GPWGGRYLVSDIKKIESKSIDSPELQYTLRGARDCFIENLDTNLSLIRYRIKDPRLKI AMLETGKRTRTSVAVVYIEDIANPGIVKDILQRIARIRIDGIVESGELQKQILNSKWS LFPQTGIVERSDMACGALLEGKVIILVEGSGLGLIAPKVFHEFLISCDDIYDNKYLAL LTKGLRFIALFLSITLGALYIAIISFHHDTLPSEYILTLAAMRANVPFNAFTGIVQLE IIVEIIRESLLRIPKKIGGAIGILGAIIIGQAAMASGMYSPLLLIIVSTELLASFMIP DYTLMNPFRILKVLMILLSAVFGLIGFTLGLCLIVTVIVSSNSFGVAYAAPSAPFNRE DFLGKLFPDKSISPKRPNFLKTTDQTRIESDERKQ" gene complement(743240..744247) /locus_tag="Dhaf_0663" /db_xref="GeneID:7257630" CDS complement(743240..744247) /locus_tag="Dhaf_0663" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_2719 spore germination B3 GerAC family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457164.1" /db_xref="GI:219666729" /db_xref="GeneID:7257630" /translation="MIDYQDGEYHFYGEVADLGGQSRKGGTGGQGNLNFSIIKASGET YTQARDDLNRKSSRPVYLGALKVLIFTDRLAFQDVEEYLNRSRTQRNTRKSLKIITSA DEPEDLLKAELDNASSVGLAIDNIQDNLMKEGSSFFVDIGDLLEALAVKKVGFLIPAM GVVDSHITLTGYTVFENGKKVGFIPQDQRRGVVFFLNPHGSFHYEVILNSNRYELDVT LNNKKITTTYADEELMIQIQMGFKAVLNYASTAQPATIGDREALQRLLEEAVLQDIVQ ALDTSQKEYALDYLGIYRYFRAQHNSTFKTIDWKQAYSDAASEVTTEVTLVRSELPQE P" gene complement(744371..745462) /locus_tag="Dhaf_0664" /db_xref="GeneID:7257631" CDS complement(744371..745462) /locus_tag="Dhaf_0664" /inference="protein motif:TFAM:TIGR00912" /note="TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bcz:BCZK2852 spore germination protein; amino acid permease" /codon_start=1 /transl_table=11 /product="spore germination protein" /protein_id="YP_002457165.1" /db_xref="GI:219666730" /db_xref="InterPro:IPR004761" /db_xref="GeneID:7257631" /translation="MTNSVTNRQLFFIIIISTVGLSAVVMPKIMSEAAGTGAWLSLLI AAVFFVADVLLIIHLGCLYRGKALAEYSELLVGKAVSRIFCGIYLIYFFIFLAFFVRS AADIIQAEILYKTPIWATMLLIMSVSLYAASKGLTNLGRILEYLGLIVLITGFILQII AFTQGNPLNNLPLIDPAEISRYIRAVPSAIFVFLGFEVITVIPLSRRNGSQALLTAGI AVLVACTFFIVQLEGCYSILSIDDIVNYDYPVLTAIRRLDIAALQFAKRLDLFFIMGW LTSIFCTTSLIMFASAAYAKKLIPKLTGITPMFAIGGAAYATGLLIPNAEDVLLVFNR FTTYTGLLPAFVIPFVLWVAHLLRSRGST" gene 745823..746686 /locus_tag="Dhaf_0665" /db_xref="GeneID:7257632" CDS 745823..746686 /locus_tag="Dhaf_0665" /inference="similar to AA sequence:KEGG:Bsph_3778" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457166.1" /db_xref="GI:219666731" /db_xref="GeneID:7257632" /translation="MIDELTTGRTPVVIASEINTMKRQMEKILLVHAIEIGRRLKEVR AMIPYGEWGDWLKVSVNYSQRTAQRLMALFDAYGEYLSLPPAGESSQNRTLPNLTFVQ ALTLLELPEEERAEFLMEMDVEGMSTRQLKQAVEQRQEARREADQAVTERDQARQEST ALRDDLDKEKNKNARLAAERDSLKAEIHGLERVKGELEQEIENKKASYDKLKERSGYK AIKKMEASLDEAYGKAEANKIAFLYDSFFKTFKELAYGMTKFAGKNPELHAIYKEKIQ DFLHNALREKL" gene 746934..747572 /locus_tag="Dhaf_0666" /db_xref="GeneID:7257633" CDS 746934..747572 /locus_tag="Dhaf_0666" /inference="similar to AA sequence:KEGG:Dred_3022" /note="KEGG: drm:Dred_3022 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457167.1" /db_xref="GI:219666732" /db_xref="GeneID:7257633" /translation="MKVSEPEKIEWQGTILSVQPRTTVWRYRLDNRTHYHRGYNLFID GKAKGMKASFSVAISEIQQKKLMFRIGDEAKGTAWTKMYDVSDYADYYRAGGLKITRK AEHAETSPPPYLIEPPDLATYAQRGARMLSAASYRGKCFQCAWATMSAVEIEYNWGVS KKYRFESFCYGPKSCKLYKMGKPRAVPYKGDGSTYDEGWMDDLCTENRGWDD" gene complement(747580..748845) /locus_tag="Dhaf_0667" /db_xref="GeneID:7257634" CDS complement(747580..748845) /locus_tag="Dhaf_0667" /inference="protein motif:PFAM:PF02810" /note="PFAM: SEC-C motif domain protein; KEGG: oih:OB1032 hypothetical protein" /codon_start=1 /transl_table=11 /product="SEC-C motif domain protein" /protein_id="YP_002457168.1" /db_xref="GI:219666733" /db_xref="InterPro:IPR004027" /db_xref="GeneID:7257634" /translation="MKSDAAEYLDKKLWKEITLPQTYEELLLALSKDELQDISRHYGF RNISSLKKKDLVHYLVQQLPCRITQELKLMDEHRYLFLKQFVSEDNKVFQAVLADNYD HKLVNYWRKTGLVLSGSSQGQKVLFMPSELQDVFQTLEHDAALQSKLKQNTEWLGLTY GMLYYYGAMGHMTILSKLEELTGVRPDYQEFHTILLRGGEYYDAPRRDSYGYWAHQNV PDVDALLKEQRARIDVDYYRFSKSKLLKAGAPDYFDDTPAFQRLHDYFSTHYQMTEKE AKDLAAECQHIVNQINEPSAIFDLLKTTIEFPNVESVQHLADVIMFFWNNTRQWALKG HSPAELGTGANPGLSSQPKNLHIPFDTDLPFATPAVRPAPSGQTLGSSHSKSSNPTVI DLKTRQKIGRNDPCPCGSGKKFKHCCGGL" gene 749233..750675 /locus_tag="Dhaf_0668" /db_xref="GeneID:7257635" CDS 749233..750675 /locus_tag="Dhaf_0668" /inference="similar to AA sequence:KEGG:Moth_0488" /note="KEGG: mta:Moth_0488 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457169.1" /db_xref="GI:219666734" /db_xref="GeneID:7257635" /translation="MKLFEILPESFFQLFTGKNRQVYAEALLLLYEQYQVNRFGVDYE VMRDLLQELIETQESLGYSFEVEEGEEAPEADLFRTQVNSILRRLKVLGWLDVETRDN FKQYILLPHYSSRILQVFKELCEERTVEFQRFAFVTYQLLTSEEAKRRPAFAMIEAEK TTEQFTGELTLLANNMKFHAEQVAAKTSIQEVLDHHFDEYKTKIVDKSYHRLKTSDHV SRYRHQILERVRTLLIDQEIFQEAVEDGIRSEFFATREEAEHKLRQALLSVEEVYREL DEVFNRIDLRHNQYLRASFDRARYLSQHSQGVDQRLAEILDWLSERRSSSKDIGAKIL GPEGLRFLTLSQLSEPSVFTPRKKRLPHQAEDIEVIQLSPELKAQLREESLSKMRRNI TREKVRDYVLAHLGQRETMGIAELAPQNLEEFLYLTYVYLYGYDGGAGYTLEREYNRV LEIGGYRFHDRQIRRLTAKKEGSHRVRATQ" gene 750656..751264 /locus_tag="Dhaf_0669" /db_xref="GeneID:7257636" CDS 750656..751264 /locus_tag="Dhaf_0669" /inference="similar to AA sequence:KEGG:HM1_1013" /note="KEGG: hmo:HM1_1013 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457170.1" /db_xref="GI:219666735" /db_xref="GeneID:7257636" /translation="MFEQLSEQDREKLRDLINRLLNVNFLVKELEREHYQNARKLRPY LDEFFKFLNWDFQLDERHECIYVFSKEGAHRLRLSQEESIALLVLRLIYQEKRQGVLL TAFPLTTKYEIRAKYETFRLPFPGKTRFLETIKLFTQYKLLQSLDDEVNLDECRFRLF HTLLYALDADSIERIHERIRAYDLEIDEEELLYEMDETASAR" gene 751233..754712 /locus_tag="Dhaf_0670" /db_xref="GeneID:7257637" CDS 751233..754712 /locus_tag="Dhaf_0670" /inference="similar to AA sequence:KEGG:Moth_0490" /note="KEGG: mta:Moth_0490 chromosome segregation ATPases-like" /codon_start=1 /transl_table=11 /product="chromosome segregation ATPase-like protein" /protein_id="YP_002457171.1" /db_xref="GI:219666736" /db_xref="GeneID:7257637" /translation="MKWMKRLRLVNWHYFQDESLEFGRQTLISGRNSAGKSTIIDALQ VLFIADQRQIRFNPAAHEEAKRSLLNYLRGKIGSDEKSFVRERDFTSYILGEFYDDKA RKSFAIGAVMDVYSDNKIDDEFFIIPDLELAELEIQKGKRTYRNKEEFHRYALGIRPK TQFFRGRQEYQKAFLNRMGQLERRFYRTFLRALSFKPIQDIREFVYQYILDERELQLN IMKENFELHERYQRELKDLEERKTVLEKISRQHEQAIKYRDIAATQEYVIRGLKHLEL TEKREDLEQDIESSQNELKSVKERAALTEEQHREARERALEYYRQWSTHQLQKEKESL EAQIEDMQKTLADQKRRLEIWVAKVKGEIRLLEGLATAFAVDGEVWRQEDRRKLENVL GALRTALDLAGRPNLEWAQEDQDVLGEEIRQSGLFLAALQMGFLQTQTRLEDRIREQE AQQERLNQEIRGLEQKKRPYREEVLRLKALLEERLAGRSPVWIFCEEMEVLDEAEAWR NAIEGYLHTQRFDLLVKPQAFSEALRIYEQEKWIHRLQGVGLVDTEKEERYLGKRESG SLAALLQTDNPIIQARIDHLLGRVMQAADEQDLRRHHTAVTRTCMSYTNLVARQIQKE RYEIPYIGSQAIVRQLEIKRRELRTVQDNLRQLQAELIIMKEWVSSLADRKTLYEGLA QGLELPKMVEQQEYELLEVQIKLEELDLSEVERLKQEYEEWHRREGQLVEAMKELSGK ITGLDLEIGRKQTDLYLLTRREQEAQELWDGWKAEYAPELWEKAAERWQEAQRQTQPA STKLVNWEGSQKGNVTRKLQEFGRLRDLRQDYNIRYTYNGSLDGEDNASYQSLLDEVA GVDIPDYQVKLAEALKQSEEEFKSDFVAKLREAIEMARHEFSQLNLALKNFPFHQDKY HFEVRPSSHYKRFYDVIMDPDIVNRGSLFDSLADDKADTLHELFERLVRGEAGDQEEF TDYRRYLDFDIAVTTETGRYYFSQVLKEKSGGETQTPFYIAVLASFYYLYNSGKTLRL VVFDEAFNKMDEERIQTSLRLIKKMGLQLIAAVPDEKMQHMAPEVSTTLIVHRDGHHC FIDMISREEMLDSLNGDEENAQDSQDDGVEGKGADTETDAGQEAESGVSADPAWMQIR MQAQMQNQIQRQT" gene 754829..756082 /locus_tag="Dhaf_0671" /db_xref="GeneID:7257638" CDS 754829..756082 /locus_tag="Dhaf_0671" /inference="similar to AA sequence:KEGG:Moth_0491" /note="KEGG: mta:Moth_0491 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457172.1" /db_xref="GI:219666737" /db_xref="GeneID:7257638" /translation="MEDKEVREYKKKILTLLLRKYQNSLSFQTGTPGKQRPQLTMAKS ELAADYEDELDFRKREWIHAALKELSREGIIQVTWPKLKEHIQVHKVYLNFAGVERAY QLLGETPLEDKLRRLKESLSPLAAHPWVWVRSWQRETCARLEERKSAGLDADNPQGYD DLVKVLKALPELEDSTPKRVFSQSLFQDSKYFEKKLEGRLISLLRKIYPEELDQDEDY LDQVGIVNNPKLTLLAGPLIIHPDRDLSHFSGGLGLSAQSVKELIIQDIPAQTILLIE NLTTYHEVLQAPPILPAPVLAIYTGGFPHKSAQKLLEKVSGFLENRRQGQGLEIFHWG DIDYGGIRIFEYLRRNFFPNLKPYRMDGVTYLEYESAGLPFGEDQAKKLAALLSDPGY SDWHEVIGLLLSYRKRVEQEGIRVG" gene 756122..757780 /locus_tag="Dhaf_0672" /db_xref="GeneID:7257639" CDS 756122..757780 /locus_tag="Dhaf_0672" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sfu:Sfum_2053 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457173.1" /db_xref="GI:219666738" /db_xref="GeneID:7257639" /translation="MNYHEFMEAVDKKLALMSEAEKSGWIHNMARTRSEHERAAFLNS LMGKQEHFPVISEREWIEAWCRKIDNQEIYFECSYEEYGGDYWGSDDVYEYTDIFEIG KDLLRAFKIAEGLLFQKDYSRAAALYDRLCRLSFPTLEDETEEWSELSLEELVSEGLV SLNLKQIALNLLYARYQAAEGRERSAALYTYLAWDMCKNISIEELFTAGPEELKGLDV FMEEWLDFLKDIPGDRAGDLLIEACLCRGGIVRLCDVAKEVCTRHPILYKYACDYLLN GNKALECERVGLEALGMLPEQLIVRGKIAAITAKAAEQLEHPDILRQCWEAAFYSEPT LNHYLQLFELPDHRNIADRAANYAKTLPERPSTAEGYNNRQMLVNHLSREHKAVIRFF NREFAAIYEECKKNKTALGWSSDFKGLAVPLFVLLLSKNKEITKAGEKLINGIDYRLG FEEEEGADFRELFLRWKEKAILTDEEYERYIEWLKKEVDIRTEAVVGGGHRKSYYKAA ALVAFLGETLESNGMANGRRILIEHYTKMHPRKRAFKGEFEMLK" gene 758230..760317 /locus_tag="Dhaf_0673" /db_xref="GeneID:7257640" CDS 758230..760317 /locus_tag="Dhaf_0673" /inference="protein motif:TFAM:TIGR00614" /note="KEGG: ana:alr3451 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase, RecQ family" /protein_id="YP_002457174.1" /db_xref="GI:219666739" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR002464" /db_xref="InterPro:IPR004589" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7257640" /translation="MQAQALSLLRKMIGRDAEFHQGQWEAIESVLRGKKTLLVQRTGW GKSVVYFIGAKLLRERGLGPTIIVSPLLSLMRNQIENAVKIGISAETINSDNTDEWTE IEEKLKRKAVDILLLSPERLGNKDFTERVLPSIEGGIGMLVVDEAHCISDWGHDFRPD YRRIVRIIKQLPPNVPLIATTATANQRVVDDIKAQLGDELNSIRGPLTRESLQLQVIK LADQAERLAWLHENINKMEGSGIIYCLTVADCNKVAKWLRGKGINALEYHADLSKDAK EKRKLREERERKLLNNEVKALVATVALGMGFDKPDLGFVIHYQRPGSIVRYYQEIGRA GRALDKAYAILLNGAEDDEIEEYFIQSAFPTPKEMNAVVNAIEKASLGMTKNKILKEL NMSYGRVEKCLKTLEIEGIIYKEKSSYFRSPVSWLPDSTKSSAITKLRINELEDMRKF VDTEDCYMRYISAKLDDPYLKNCGKCRNCLDTQFFSEVVSRDNVLEAIQFLKGEYLDI EPRKQWPAGIKAEATKKIPEEEQNFTGKALCSYGDAGWGRVVAEDKYRNEYFSDELVD ASLALLKNTLLKEDLGWVTSVPSLRRPLLVKDFAMRLAEKIGLPYIDAIRKTEDTPYQ KKMENSYQQCSNALHGFSVIERVPESPVLLVDDIIDSGWTLTVCGILLRGERSGPVYP FALAKASGLEGGE" gene 760317..761558 /locus_tag="Dhaf_0674" /db_xref="GeneID:7257641" CDS 760317..761558 /locus_tag="Dhaf_0674" /inference="similar to AA sequence:KEGG:alr3452" /note="KEGG: ana:alr3452 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457175.1" /db_xref="GI:219666740" /db_xref="GeneID:7257641" /translation="MNNMLSQDSLAMVLLCTTVGLSKDNTEIRPLTIKQWNQFLRRMF NAEIKNPAALFEVGKEDLKKRLGLSDEESQRIQFLLSRAGQAVVELENLNNMGIFVTT RAEKSYPQRLKSVLKKDSPPVLFYSGDIELTQMEGIGIVGSRNIDPKGLEFTKELGSK SAKQGLTVISGGAKGVDEVAQNEALRQGGKVISILADSLAQKIKHKEAREAIMEQRLL LLTSFHPRAPFTVYNAMQRNKYIYALSHIAVVVSSDYSKGGTWAGATENLRNKWVPLF VRKDDIVPEGNEKLLKMGANPLSAKDLFSESFNANRLSSLADQYYEQGSLFSVSNLLE KETDYQVSNDSGESDHEERIDLFPVIWPYLESALQKARTKEELCTMLHIHGNQMKIWL ERALAEQKIKKTRKPAGYIVQ" gene complement(761792..762541) /locus_tag="Dhaf_0675" /db_xref="GeneID:7257642" CDS complement(761792..762541) /locus_tag="Dhaf_0675" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_0035 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457176.1" /db_xref="GI:219666741" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7257642" /translation="MIRKIIKIDEQSCDGCGLCLTACHEGALVLVNGKASLLRDDYCD GLGNCLPACPQDAISFEEREAVEFDEEAVKKHLESHHQHDDNEHHEHQGHTLACGCPG NHAELLSRPESTYKPETQQENKSQLKQWPVQIKLVPPNAPYFDNAHLLIAADCTAYAY GNFHNEFMRNRVTLIGCPKLDSVDYSEKLTAILQQNSLKSLTLVRMEVPCCGGLESAV KTALKNSGQIIPWQVVTITTNGRILENQIHN" gene 762775..763392 /locus_tag="Dhaf_0676" /db_xref="GeneID:7257643" CDS 762775..763392 /locus_tag="Dhaf_0676" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ote:Oter_0924 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457177.1" /db_xref="GI:219666742" /db_xref="GeneID:7257643" /translation="MGLLREIFGPSQHEVWEALCQEIGADFIDGGFFKGTKVVAEIKE WVITLDTYTVSTGKTSTTYTRMRAPYLNKDGFKFRIYRKGIFSNIGKLLGLQDIEVGY PEFDDQFIIKGNDSDKLVSLFSNSRIRKLIEIQPDISLEVKDDEGWFGSEFPEGVDEL YFQVPGIIKDMDRLKTLYFLFAEVLNQLCLIDSAYEDSPDVTAQL" gene 763441..764022 /locus_tag="Dhaf_0677" /db_xref="GeneID:7257644" CDS 763441..764022 /locus_tag="Dhaf_0677" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tde:TDE2415 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457178.1" /db_xref="GI:219666743" /db_xref="GeneID:7257644" /translation="MRLWTIQDKAAYDDLCEKGVLHCDAALAGWLKDDLFRKSYDWLV GEMKGRVGEPPQGVEYPVWAWYLLLGKNVKPDLRRVEFRNYVGEHYVIEAEIPDEKIL LSDEEYWHLVLNDSYFSDAPEDDDEAEELADKWFAGLPAQEQEQVKRESWKKVFDKAC CPWTFVQATFWELRKEQIVSVRKFYGKAKPIEL" gene complement(764101..764445) /locus_tag="Dhaf_0678" /db_xref="GeneID:7257645" CDS complement(764101..764445) /locus_tag="Dhaf_0678" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ1305 hypothetical protein" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002457179.1" /db_xref="GI:219666744" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7257645" /translation="MASLTKTEQTALDKTIQHIRDVCGDNLISVILYGSKARGDSLPE SDIDIMILVRNRNKVDRDKLYDFLLLDDVGYDINISLNIYEGEYFNQLSTMHVPFVEN VLKEGETLWAVV" gene 764678..765118 /locus_tag="Dhaf_0679" /pseudo /db_xref="GeneID:7257646" gene 765543..765824 /locus_tag="Dhaf_0680" /db_xref="GeneID:7257647" CDS 765543..765824 /locus_tag="Dhaf_0680" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: trq:TRQ2_1633 FmdB family regulatory protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457180.1" /db_xref="GI:219666745" /db_xref="GeneID:7257647" /translation="MKECNGCTGCNEVNMPREMEELDEVPSNRFPEYTMLCESCRHEF KLEASEEDIEKAVCPACQSAKVQNLYISFPEDGPGFRKKVSGFSFGGCN" gene complement(765997..766872) /locus_tag="Dhaf_0681" /db_xref="GeneID:7257648" CDS complement(765997..766872) /locus_tag="Dhaf_0681" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_3865 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457181.1" /db_xref="GI:219666746" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257648" /translation="MEYKQLQVFLKVCETKSITKAAERLFISQQAVSRIIANLENELN ARLFIRTPQGVELTDCGGELEQQAFEFLHHHDSIVTRLGNLNREGRKEYKIGFFMGML QMLPAHFLPDLMDAHPRLQFRLQSYPDNERSRSFQNYGCDLVMTTSPLTSGNFVQIFH YESPIGVILQRSHPLAQKRELTMADLKGQRLITLNSDNRSQSRLMNRLREWGLDAHSV VGDTEWGLTWDLLRRGYISFYAGKLSVLPDDMLGLPLTDLNLAWEFFVYKRQSKKLSA LEKEILAKIRENISD" gene 766999..768921 /locus_tag="Dhaf_0682" /db_xref="GeneID:7257649" CDS 766999..768921 /locus_tag="Dhaf_0682" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; KEGG: cpy:Cphy_3299 flavocytochrome c" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002457182.1" /db_xref="GI:219666747" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7257649" /translation="MVEKAKVSRRQFLRNTAIGAVGVAAAGFLGGCSSDAGSTNPGAA VYKPGTYTGTAKGMGQVTVTMTFSETAITDVKVDCANETAEIGGAAANGLQEALMAAQ SAEIDGVSGATMTSDAVKEAAASCINQALGIAVEAAQPADIDNPFPACEDLSAVNAAI NSGEVAFVSAPITDFVRTVNVDVLVCGQGPAGMASALACAEKGLKVTAVEKGKNPTWR SATMGAFNDRIHKKFGVTFDMKQWLDDAMINCSYRGSQEIYQQYINTCDEAVNWFLDK LALKDEDYFLTFNAGDFRDFNAAYDELSLSRSWNTSINIPIPAPEIIAVMQQRIADAG VEVLFNTPVVQLVREGGKVTGAVVKTEQGYVKYQTAKGVVLATGGYEFNPVKLNACCR PRDLALSGWMNGTKTNTGDGHEMAKAVGAMEDEYPHPLMLDPQQLMPFLRVNKSGKRF TAEYEAYNHLSNAIQSQPGAYDYYIVDANCSAIVDKIWTPSSGCYAPKEVWIAAATSD KALVANTLEELAGKMGVDADAFVATIKRWNAMCDAGEDTDFHFPGKMMHKIDTAPFYA TKEMAEALCTAGGLQITPRSEVMAADGQAIPGLYAIGNVSGSMFSGTYPHNQNCLSHS RCVTFGYNVAKTLAAR" sig_peptide 766999..767109 /locus_tag="Dhaf_0682" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.709 at residue 37" gene 769134..769991 /locus_tag="Dhaf_0683" /db_xref="GeneID:7257650" CDS 769134..769991 /locus_tag="Dhaf_0683" /inference="similar to AA sequence:KEGG:ebA5188" /note="KEGG: eba:ebA5188 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457183.1" /db_xref="GI:219666748" /db_xref="GeneID:7257650" /translation="MEEPWGGAKTSYLTGIKETLEANYGPIHFTRLYFGEEFCERALS TGKALEEAVAAAEERGWGFTYVTPYLTETGLTKVRLLLDILAQTKPEAEVVINDWGVL DWVTEHHPTFTPVLGRLMNKIIRDPRMPDSLRNSPDQTVMHKFRTCNLAGGEMKDLLD QYQVKRIELDYPPQGLDPNLPAWGYDISLSIPYGVIMTGRICLMQSWGLAAGEKFRTT GPCPRRCRLGWLELSDPSGRVKKDQDWQIMQKGNTVFYRQSKEFLAEILTEAEKTGVS RMIFQPEPI" gene 770024..771055 /locus_tag="Dhaf_0684" /db_xref="GeneID:7257651" CDS 770024..771055 /locus_tag="Dhaf_0684" /inference="protein motif:PFAM:PF01136" /note="PFAM: peptidase U32; KEGG: eba:ebA5191 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptidase U32" /protein_id="YP_002457184.1" /db_xref="GI:219666749" /db_xref="InterPro:IPR001539" /db_xref="GeneID:7257651" /translation="MNILAPVSSVKEAEQLIAHGADELYCGIGLGALKNRPGNTDREI WINRRESGNANIPDLESLSLLVDHAHAQGKKVYLTLNQPGYAQDLYGEILAFVREVKK SCQVDAFIVADPGLIRMLIGKEPDMVIHVSSLAGVLNSSAVLFFKKLGVKRIVFPRYL EAETLKKIMDRAGEDLEYEVFILNDGCMFEESHCHVSHQFGGAFCHNPAWRYKLIPPE EGGILETWKLRNLKIAGETFEGNVEEWKRWQWLGIKNGGGYIGAKYPLGMCGLCTLPE YRDMGITSLKIVGREAPLSKKIKSVQLLKKVLDYQREEHLPDEVRDYARRTKGARLLC GSGYMCYER" gene complement(771125..772438) /locus_tag="Dhaf_0685" /db_xref="GeneID:7257652" CDS complement(771125..772438) /locus_tag="Dhaf_0685" /inference="protein motif:PFAM:PF02368" /note="PFAM: Ig domain protein group 2 domain protein; KEGG: fjo:Fjoh_1208 Ig domain-containing protein" /codon_start=1 /transl_table=11 /product="Ig domain protein group 2 domain protein" /protein_id="YP_002457185.1" /db_xref="GI:219666750" /db_xref="InterPro:IPR003343" /db_xref="GeneID:7257652" /translation="MKRKFKALFATVCIVGLFLSSSLPVLAAPPSWAQSHEKSIQSSS KDCKTHKVSAIILKKRMFLKVGDSATLAVKIAPSKANQKVTWTSSNTEVATVDANGKV TGVKAGKAYVTVTTEDGRKSAKCKVTVADPRGTGKISVTGVTLNQSAMNLSAGGATGT LKATISPSNATNKKVTWTSSNSNVATVNSKGVVTPLTPGVTTITVTTAEGSKTAHCTV NVTAQPIISNVKISSNNADTTKAMHGDTIVLTFTASVPVTQLNNFKINGSNPDRFTHT GNVYTATHLVDSGDPITGVPATFQINVRDAAGIYSQTIEATSDGSTVTIIPKYARISK VAISSDNTDPTKATIGDVITLKFTTDEAVAKLSNFKINGSNPDSFVEVNNNDGTYTYI AKHLVDSGDQVTGDPATFQINIKNAAGIYSPTIEKTSDGSRVTIR" sig_peptide complement(771125..771208) /locus_tag="Dhaf_0685" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 at residue 28" gene 772703..773980 /locus_tag="Dhaf_0686" /db_xref="GeneID:7257653" CDS 772703..773980 /locus_tag="Dhaf_0686" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cpy:Cphy_1639 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457186.1" /db_xref="GI:219666751" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7257653" /translation="MKLSLSKKIFGFLLAALCVFLVLAGANIALLRAAVDHREELSQL TAVLNIALPLAGLLLGGIAVNLLFRHSRVLNLSNDFYQQIGTGNLTEQMANQYRAKIG EAFEVQFKMLQGRRMLVKKLSDTSADLEMTGGELTAAVKDAFAVSGDIARILEQLAAG AKEQALTLENTTRIIEKLSVHADEVAKNTGNVGHSSAKAAEAAEAGLLQAENMMQKIE EISDLSVQTVEVVAMLGEHSTRIGQIVDVIKGIADQTNLLALNAAIEAARAGEQGRGF AVVAEEVRKLAEQSSSSTAQIAQLIEGMQEETARVVAVMQKSKDEVAAGVETVRLAGD SFQVIVREINTLAEQLNQFSAASREMAAGTGQTTGLIQSIGAIAEETAASTEEVSGLA KKQAAQMELVNHSAENLDRVRKGLAGLVAQNKL" sig_peptide 772703..772777 /locus_tag="Dhaf_0686" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.714 at residue 25" gene 774189..774875 /locus_tag="Dhaf_0687" /db_xref="GeneID:7257654" CDS 774189..774875 /locus_tag="Dhaf_0687" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: drm:Dred_3227 CRP/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002457187.1" /db_xref="GI:219666752" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257654" /translation="MGEILKNYIFPDTFYPVPKFKDYIYLGSQRSYCKGETVLLPDEV LGRIIFVLSGKLNVSKITEDGREKFVYSAGQFCFMDRLFTFENDHMQIVAIEDSKVCL FSKEQLLAAFKQDEELIIDVLRHYDSKVYYFMNLNSEINLYSPSVRLLRLFYELSHSK GEYDKGVWKVEIELTNKKISEITGLHYVTVSKILGSLKKAGILKKRKSKIIIYDLEKL KALLEEGIAY" gene 775021..775332 /locus_tag="Dhaf_0688" /db_xref="GeneID:7257655" CDS 775021..775332 /locus_tag="Dhaf_0688" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bld:BLi00549 YdcA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457188.1" /db_xref="GI:219666753" /db_xref="GeneID:7257655" /translation="MGTILIFLAGILFLAGILFIKPYAQKNVMWKTVLIWALYGVGSA VLWMGVSFIYLNAAVGHTKATSTAIFLFGGLTVVIAVILARVLGFIGNNKSKTMESIS S" gene 775329..776720 /locus_tag="Dhaf_0689" /db_xref="GeneID:7257656" CDS 775329..776720 /locus_tag="Dhaf_0689" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: jan:Jann_3974 reductive dehalogenase" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002457189.1" /db_xref="GI:219666754" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257656" /translation="MKGLIRLADSSKNQNTSEQKLQLSRRGFLKTGAAAAALGVLGAV KAPSKVAAAAVNNYEYIPPGKGQWSKLRPKPNYGGASVRLAEHNDQWLGTSKIVGTVN KSKESDMGFTLAMEGKLGPKAQAGFYTIGLRHPLSDAMGMAIAPISDTMWVEGHTRPE KLPIPDPEQMSMHIKDVAYYLRADEVGIGNMPEYAYYSHKMQPSMIGVIAGMVPKGTP FEDVPYEEKLPYVIVVAVEQHLETYLASTGYDGISDSQSFRSYHATANIALIIAQYIR GLGYHARAHHFGNYGAVMAPCMIAAGMGELTRTGDTVAHPRMGYRNKVAAITTDLPLV PDKPIDFGMADFCRVCNKCADNCPAEAITHDKDMVEYNGYLRWNSDYKKCAEFRAGND EGVSCGRCIKVCPWSSKEDSWFHEAGIWVGSKGEAASKLLKGIDDMFGYGTEIVDKHK WWLEWPELYKFDY" sig_peptide 775329..775487 /locus_tag="Dhaf_0689" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.716) with cleavage site probability 0.413 at residue 53" gene 777026..777343 /locus_tag="Dhaf_0690" /db_xref="GeneID:7257657" CDS 777026..777343 /locus_tag="Dhaf_0690" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457190.1" /db_xref="GI:219666755" /db_xref="GeneID:7257657" /translation="MSGFIGYGLGIVTVLAVQLYKKKETMKNRKFSAWNWGMAAFVSL YAGFLVYWVYMGVWEGQPKPGVVGLFIFGAIGVAMVAIAQLVFNKLAGRKMIHKATKE GQA" gene 777345..777776 /locus_tag="Dhaf_0691" /db_xref="GeneID:7257658" CDS 777345..777776 /locus_tag="Dhaf_0691" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457191.1" /db_xref="GI:219666756" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7257658" /translation="MDVKVSRRSFLKGTALTGALTGLFTFTPGAREKLMGDGAADALE YRRVDKPTYETVGEVGRFDNRNNAHSRGYWDESQSYYMFGPQGMTALHDTVKNIAAGT PEPGFDHRLNFRSAKICSNSVYYWIRLKIFCSLTEKHLSNW" sig_peptide 777345..777437 /locus_tag="Dhaf_0691" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.827) with cleavage site probability 0.734 at residue 31" repeat_region 777675..779183 /note="ISDha5" gene 777830..779182 /locus_tag="Dhaf_0692" /db_xref="GeneID:7257659" CDS 777830..779182 /locus_tag="Dhaf_0692" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: pth:PTH_2669 hypothetical protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002457192.1" /db_xref="GI:219666757" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257659" /translation="MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVV FQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVGRF EKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSF APLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSPKPDTVVQMLERALKAGFS ADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPK AEILGSVRVHTPSGLALKVVFVQNRNNRREWLAILTTDLSLETTEVVRIYGMRWSIET FFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFA DEVMDLDLKTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES" gene 779207..780265 /locus_tag="Dhaf_0693" /db_xref="GeneID:7257660" CDS 779207..780265 /locus_tag="Dhaf_0693" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; KEGG: hmo:HM1_1546 tetrachloroethene reductive dehalogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002457193.1" /db_xref="GI:219666758" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257660" /translation="MSSALLFKVGSFATSHIWEPELPPGLTEPYQTTPEEAAQTVKMA AKHFGASVVGTCKLNRNWLFSHRYHNENWKTDAKDLFTKVFGLEKGLLGPVMTPEERK TLQLPHVDDELPQEMNNVVVCGIEMDYEAYRRTLSCVEVAETYRAYSFDKFLIMHLAL FINYMGYRAWPFGSYGPGLGIPMAVDAGLGEMGRNGLLINPELGPRLRICGVITDMPM QPDKPIDMGVAKFCETCAICADNCPSESIPKDNNRTAEAVYNTTNYGVKKWPIDASKC KAYWDDHNISACGNCVHYCPYNKPNTAMHRMAAHMAPVLGSALVKMDETLGYSEPKDV ASWWAQNPNKFHPRSTRK" gene 780363..781538 /locus_tag="Dhaf_0694" /db_xref="GeneID:7257661" CDS 780363..781538 /locus_tag="Dhaf_0694" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: det:DET0237 transcriptional regulator, putative" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002457194.1" /db_xref="GI:219666759" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7257661" /translation="MLKRVMVVVAVVMLMGVLVYANLTAEKNELIYLKQILPQTDFAK TSDSPPIFKAVQSDGNNYFFVVFGEANGYGGPIKMATVINQLGEIQQVVVVENRETPS FLNKVLKANYLDQFKGREANAPLELGADIDSVTGATVSTRAIADAVRQGSYEAAVRQL GLNVPQRTESWQFGLAEALAVLLYLAVLMLGLVWKKPQTRLLTSLVSVVVLGFWLKIQ ISLSSVSGLFLGYWPAVRPNIVWYVIVIGGLGMVVFSGRNLYCYWLCPFGGVQELTSM LKSEPQRRRVANPILKLLPKVLLWFGLLLIFFFRNPAVGSYEPFGTLFGLSGTILNWL LLLVIIVASIFIYRFWCDCLCPVGAFLEICLNIRRRLGKAFRHLAKPASPDQTPVKQ" sig_peptide 780363..780428 /locus_tag="Dhaf_0694" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.979 at residue 22" gene 781574..781768 /locus_tag="Dhaf_0695" /db_xref="GeneID:7257662" CDS 781574..781768 /locus_tag="Dhaf_0695" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457195.1" /db_xref="GI:219666760" /db_xref="GeneID:7257662" /translation="MSTPKFSIMSCFFSIAALFLIALIIGQNIESNITMDLSSQKIIM ESPAPPEPETPIDMHNFTVE" sig_peptide 781574..781642 /locus_tag="Dhaf_0695" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.897) with cleavage site probability 0.505 at residue 23" gene 781894..783546 /locus_tag="Dhaf_0696" /db_xref="GeneID:7257663" CDS 781894..783546 /locus_tag="Dhaf_0696" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: glo:Glov_2870 reductive dehalogenase" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002457196.1" /db_xref="GI:219666761" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257663" /translation="MKMNLDRRSFLKASLVSVAAVAAASAAAAKETFAPLTAEAAEII APIRETAEFPYQVDPKYQRLPAEKLAYLRMFDPEENKGPIKFHFDDVSKITGKKDTGK DLPLLNAESLGIKGRPATLSETGAIFFSHHDGSVLPLREKEMGWRALDMALVVASWSV EYHYNGFTAPGSGPGGVIAHYPFNPMTNETGTEPVFLAGMYSWDNTKARERREQGRQW KFESVEEASRIVKKAARFLGADMAGIAPYDDRWTFSTWCRPNLKPFKLPNGRTEYFPT DPFKLMKGEVEVYGSTSVEADWEKYAGFTPKSVIAMTFEMDYEAYRTAPSVLQGAAPG KSYSNMGEVAYKVASFLREIGYNAVPSGNDTGMSVPIAVQAGLGEAGRSGQLITQKYG PRVRIAKVYTDLELVPDKPINIGAREFCRLCLKCADVCPAQAISHVKDPWVLQPEDCT PSENPYTEKWQFDSQRCLSFFAYNGGDCGSCIAVCSWNKIDAWQHDVARIATQIPLVQ DAARKFDEWFGYNGPVNPEERIESGYIANMVKDFWKDTEPTK" sig_peptide 781894..781983 /locus_tag="Dhaf_0696" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.582 at residue 30" gene 783562..783867 /locus_tag="Dhaf_0697" /db_xref="GeneID:7257664" CDS 783562..783867 /locus_tag="Dhaf_0697" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457197.1" /db_xref="GI:219666762" /db_xref="GeneID:7257664" /translation="MEIVFMFFGMLMLLIQYGIWRYSKSKGKDTIPIQICGFLANFLL IFTLAWGYASLLEHEYQAVAMGFVFFGGLTLIPTIITYRLLNPSLKKTKDRSETLST" gene 784155..785237 /locus_tag="Dhaf_0698" /db_xref="GeneID:7257665" CDS 784155..785237 /locus_tag="Dhaf_0698" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: glo:Glov_2869 FMN-binding domain protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002457198.1" /db_xref="GI:219666763" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7257665" /translation="MGTQRAYKVEAAGEKYYAVCDSAVGYQSRIEVMTIVGSAGSVVK AVVTKHGETPIFFERLYTQKLFERFEGLSVREPIYLGGASGYSGDLDNRETDNYIDAI TGSTLSSHAVAESVNKSTAYVASQFFNTHWDNPYDRFQFTVKDLAMMMIYLIALAAAY LKKLVRFRLWLLLASFAVMGFYVKRFIAVSNLFSLITLQIPRLTDLGWYVLIIGALGF IVLLGKNMYCAWICPFGAVQEALNKVSGFKSWGISPQTIKRMKLVAPTLLWLAVMLGT FLGDYGTLDYQPFSALFLFKAVWVMWLMLPVFIFISLFISRFYCQFFCPVGFLLTLLN RWRNKGVRACQQIRVQMGNHWKSSKG" gene 785391..786344 /locus_tag="Dhaf_0699" /db_xref="GeneID:7257666" CDS 785391..786344 /locus_tag="Dhaf_0699" /inference="protein motif:PFAM:PF05698" /note="PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: bcy:Bcer98_3187 trigger factor" /codon_start=1 /transl_table=11 /product="trigger factor domain protein" /protein_id="YP_002457199.1" /db_xref="GI:219666764" /db_xref="InterPro:IPR001179" /db_xref="InterPro:IPR008880" /db_xref="GeneID:7257666" /translation="MRQFELGPYTGLNVKKFNIAVEEDEFNGAMAYVRESLTETRIEK ENDPVEPGDYVVVNIEGEENGIPIPSVKQKSFKFRVGDENVLGDFSSNLLGRKRGQTV TFDVVLKPVLLEFADLWGHRVTFTVEIVNVFALKEPELTDEVIRRIEPGVSTLQEFKE VLAAEITQEKKTRAQGANIDRVFQAIAGRCKYEFDPEVLNQAAENLYRQFAEELKTIH GVELINYLMYRKLSSDELLAECKQESARKILGEAIMDAVIQAEGFRIPAERLEKEQEK LAKNRQGDQEFDSVAALKKAETQLLRRKAMEFLLEQNLARE" gene 786367..787080 /locus_tag="Dhaf_0700" /db_xref="GeneID:7257667" CDS 786367..787080 /locus_tag="Dhaf_0700" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; KEGG: cac:CA_P0082 CRP (cyclic AMP receptor protein) regulatory protein" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002457200.1" /db_xref="GI:219666765" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257667" /translation="MLISNSQMDLQWIERPVRDIVVRHTLSKGTKVRFKKRTVIIEEG SIVQHAYVIFKGWAAYYLSNPCGQARIASLVGPLRSFGLGPALDQLPVKVSIVAVEDC EMYRVSRSDLIQAMQEDVNFGIEMVSVVNMRVRSILEGANIFSSLSTPEQRLIYYFIS LLQSEGVKEDGEWYALPVNLCHEQIGEIIDTSRITVCRMFNRFKQTEKLKMEHNRIYI HKKFVENYLRTELLSSFLL" gene 787280..788794 /locus_tag="Dhaf_0701" /db_xref="GeneID:7257668" CDS 787280..788794 /locus_tag="Dhaf_0701" /inference="protein motif:TFAM:TIGR01469" /note="TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: drm:Dred_2162 uroporphyrin-III C-methyltransferase" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C-methyltransferase" /protein_id="YP_002457201.1" /db_xref="GI:219666766" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR003043" /db_xref="InterPro:IPR003754" /db_xref="InterPro:IPR006366" /db_xref="GeneID:7257668" /translation="MAKGYVYLVGAGPGEPKLLTVKGAECIARADVLIYDRLASPRLL SLAGPDCEMIYVGKSPDRHTLRQDEINQLLVQKSLAGKVVTRLKGGDPFVFGRGGEEA EALLAVGIPFEIVPGITSAIAVPAYAGIPVTHREMTSSFAVITGHEDPGKNDSAIAWE HLVPAHGTLIFLMGMENLSLIAQRLIQHGKNPATPVGIIQWGTRPEQRTLVGRLDTIA SLVQEQGFTNPATIIVGEVVSLREKLQWFEKKPLFGSRIVVTRARHQAGVLAQAIEDL GGEPWEFPAIEIREPSDPELLTRAMQDLRRFKWLVFTSANGVERFLSGLKDSGKDIRD LSGMEIVAVGPVTQAALEQRGLCVTCMPEEYRAEGILAELTGRILPGEGVLLARAEEA RDVLPQSLQTLGAEVWDVPVYKTVSGSANKGLLKSMLEDKQIQAVTFTSSSTVRNFCR LIDNQTELLDGVKLFSIGPLTSAAARELGLPIHKEAARSTIDGLVAALVEGARG" gene complement(788804..789505) /locus_tag="Dhaf_0702" /db_xref="GeneID:7257669" CDS complement(788804..789505) /locus_tag="Dhaf_0702" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002457202.1" /db_xref="GI:219666767" /db_xref="InterPro:IPR000595" /db_xref="GeneID:7257669" /translation="MNDLLPFLTQVSLFKGIQMAELPEMLTNLNARKVSYKKQEVILR EGQSVYSVGVMLSGKVKVVKVDFRGNANIMAFIEPGEMFAEAYACTQTANLPFTVLSV TESEILWINYRKIISTCTSACRSHEKLIENMMRALASKSILLNQKIEHISKRTTQEKL LAYLFDQSKKLGVNEFDIPLSRQELADYLCVDRSAMSNELCKLQREGVLNFHLNHFKL SKSSSEEAHNLPISP" gene complement(789757..790020) /locus_tag="Dhaf_0703" /db_xref="GeneID:7257670" CDS complement(789757..790020) /locus_tag="Dhaf_0703" /inference="similar to AA sequence:KEGG:DP2707" /note="KEGG: dps:DP2707 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457203.1" /db_xref="GI:219666768" /db_xref="GeneID:7257670" /translation="MDSQTLKEQVEINVFHVPKERKVAMHKHPQQVEVFYCFNGSGVG VLEDSEVALAVGGVFIAPAGAMHSIRSDECIDVLSFLIPVINN" gene 790514..791698 /locus_tag="Dhaf_0704" /db_xref="GeneID:7257671" CDS 790514..791698 /locus_tag="Dhaf_0704" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lme:LEUM_0874 permease of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457204.1" /db_xref="GI:219666769" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257671" /translation="MKMKNSGFTLKLAISSVSLLVMTYSSISVIMADLIKAFPHVDPT VVQSVLTISALAIVFGTLLTGLTAEIVGKRKLLLLGIALYTLGGIGPLFFSSFASLMV SRAVLGAGIGIMNPIATTLIGDFFQGGADRAQLVGFKSTAGGLGQTIFPIFMGILAVS GWRNVFWVYLFGLLILAVVYFYIPEPPKLQVNGAKAKVKDFYKINFPVIAICLFVFFA FVAHMAIFTNTAIFMVQSGLGDTSSATVAIAVLSAAHMFMSLIFKYSFQIFKRFVGPI GTVMLGAGLLIMANAQSMTAVSIAMICMGIGAGTYIPYAYDLITNLAPNTSRSFSISL MLICLNFGGFLSPFIMTFSASAFGNNTSGFKMLIAAVIFFVLTACTLLYAIRSPKGAA ER" sig_peptide 790514..790612 /locus_tag="Dhaf_0704" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.955 at residue 33" gene complement(791728..792411) /locus_tag="Dhaf_0705" /db_xref="GeneID:7257672" CDS complement(791728..792411) /locus_tag="Dhaf_0705" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; KEGG: cpy:Cphy_3149 cyclic nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002457205.1" /db_xref="GI:219666770" /db_xref="InterPro:IPR000595" /db_xref="GeneID:7257672" /translation="MNDLLPFLAQVSLFKGIETEELPKMLNRLNARKVSYKKNDVILR EGQSVHSVGIMLSGKVKVVKEDFKGNTNVMTFIEPGAMFAEAYACTQTANLPFTVLSV METKILWIDYRKIISTCTSACESHEKLIENMMKALASKSILLNQKIEHISKRTTQEKL LTYLFDQSKKSGSNEFEIPFSRQELADYLCVDRSAMSNELCKLQREGVLNFHLNHFKL SKSSSEAQL" gene 792760..794004 /locus_tag="Dhaf_0706" /db_xref="GeneID:7257673" CDS 792760..794004 /locus_tag="Dhaf_0706" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mta:Moth_0039 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002457206.1" /db_xref="GI:219666771" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257673" /translation="MGVLADVYGMLSMCSKCGICQTACKTYKVDGAETKVTRGRIQLI KAVAEGKLEPDENYEDAIMSCLLCGECAVACPSRVKGNELVLAARRDFKLRKGIHPFV KSFALKTLANPKKLERAFKLFGGMGKNVLRRIDGVDYFRGVDIKGMNVAKVPFLEQVP EKITVQNPKHKVAFYVGCFLNYSLDQTAQSVVKVLTKNDCEVVIPKGQVCCGLPQYVY GDFETAKVNARKTIDSFLAKDVDTIVVACATCVAMLKEDYPKLFADEPNYLPKAQQFS AKVLEFSQFVAKIGIDQSKLHNSLPVKVTYHDPCHMVRGIKVTQQPRQLLKSLPKVEY IEMNEASRCCGASGLVQAFYHEMSTDITRQKTQNVKDSGVEIVATSCPACMMRIQGGI NMAGQNQKVMHVADLLAKAYEG" gene 794022..795323 /locus_tag="Dhaf_0707" /db_xref="GeneID:7257674" CDS 794022..795323 /locus_tag="Dhaf_0707" /inference="protein motif:PFAM:PF02913" /note="PFAM: FAD linked oxidase domain protein; KEGG: gbm:Gbem_0564 FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain protein" /protein_id="YP_002457207.1" /db_xref="GI:219666772" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:7257674" /translation="MSNAIISRLKGIVGDQYVINNPGQMAQYLKGNGKPAAVVCPGNT AEVAGIVKLANSHNIKISAAGQVADTKALDGGIALIMNRMNRILEIDHENMVAVVEPG MSHQEFLKHIGEAGFNFPPEPCAVDTSSLGGCFAIGDSDSKSFNYGPTRTYLLGFEMV LPTGEVLNIGNKCIKNVSGLDFIHLAVASQGTLGIFTKLLVRLLAAPLAKKAVIARFA SIHKANAALNTLIKRHIHPDRMNLISESLTKEVLPGAGHLALIDLEGFVESGTNLAKE IAAMLTLGGGTDVQIIDDAGGYENVINAWLKVRQTLYNQPGQVLEFAVGPMKMPQALT QLEGIIGDLGAYPGVVIEGLLGFARLLLPENADKMALAAQVNKMALSLGGNITGFLGQ KLICQAQNDAEMWADTTALLNELRNQFDPKGILSPGVSLQA" gene 795347..796729 /locus_tag="Dhaf_0708" /db_xref="GeneID:7257675" CDS 795347..796729 /locus_tag="Dhaf_0708" /inference="protein motif:PFAM:PF02913" /note="PFAM: FAD linked oxidase domain protein; KEGG: bpu:BPUM_1792 (S)-2-hydroxy-acid oxidase subunit D" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain protein" /protein_id="YP_002457208.1" /db_xref="GI:219666773" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:7257675" /translation="MLSQTVIKRLKEIVGEKNFVTGKADLFPYTYGFCTLLSGDPLGV VSPQTTEQVVELVKYLNEHNIKVIPRGAGTNVIGGTIPAEESVVISFTRMNKILEIDT ENFVTVVQPGVVNFDLQLELEKRGFYYPPDPSSAKVATLGGNLAESSGGARCFKYGVT RDYILGVEVVLPNGKVINTGGRNFKSEPGYDLTRILNGSEGTLGLVTKIILRVLPLPM ARRMMLAVYDKVEDAAQTVDGIFAAGIAPATLEMLDNFFINTTEDFCPTGIPRDAGAA LIIEIDGYPEDMNEQVRIIGEITRKAKARDFKIARSMGEVEQILTPRKVGFGSIASIT PSYSINDIAVPRSNFSQAFAGIKKIAKDLNVKIGVLAHAGDGNFHPFILYDQRNKEEV ERVHAAEQALCEMALSFSGTITGEQGVGIAKRKHLDKQFKPEAMEAFRKIKRSFDPQN RFNPGKIFDS" gene 796923..797618 /locus_tag="Dhaf_0709" /db_xref="GeneID:7257676" CDS 796923..797618 /locus_tag="Dhaf_0709" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: drm:Dred_3227 CRP/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002457209.1" /db_xref="GI:219666774" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257676" /translation="MERVISNHYCILPGHFYPVLKLRAYTQLGVIRNYCKGDSVVLPG EVVNKVIFVLAGKLGVSFLNEDGRQKFMFYVDPFTFADRLFAIEECFVHVVAEEDSTV CFFENEPLLRVLQEDRELLIEFITCYASKCTYFMREAKELVLYRPSARVLRLLYELCR AQGKECPQGYVIDQRITQKAISEITGVHFVTISRLFRYLKEENILQKQANKIIVYDLP RLRALIEEEELRF" gene 797763..798077 /locus_tag="Dhaf_0710" /db_xref="GeneID:7257677" CDS 797763..798077 /locus_tag="Dhaf_0710" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457210.1" /db_xref="GI:219666775" /db_xref="GeneID:7257677" /translation="MSTFLIFVAGMLFLAGILFVKPKVRMDKVWKNVLIWALYGFWFF MTCIGVSFVYLNAGVGHVKATSTAIFLFGGISIVLAIILARILGLINIKTGKSSGETQ QT" sig_peptide 797763..797825 /locus_tag="Dhaf_0710" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.858) with cleavage site probability 0.858 at residue 21" gene 798112..799578 /locus_tag="Dhaf_0711" /db_xref="GeneID:7257678" CDS 798112..799578 /locus_tag="Dhaf_0711" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: sil:SPO0589 oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002457211.1" /db_xref="GI:219666776" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257678" /translation="MSGVLDKNRDEQNEGYNHNSKDNHARGPAAHRQPRISRRGFLKT GAVAAAMGVMGAIVGPPKAAKAVIDLGYRNSYIHEMHYTPVPKGQWSKLKPKVDYGGA SVRFVEHNDQWLGTTQIVGNIEKTNEDDGGFPLAIRGLLGEKSKYGFVSQAIRYPLGD ALMLPTQEISKPEIVGGTPKPEKLPIPDPEQMSQHMKDLAYYLRADEVGIGKMPPYGY YKSVMNPPEGAYAAGIVSLETPYENVPVTESLPYVICVAVEQHLETYMASTGYDGISL EQSFRSYHATANISVVIAQYIRNLGYQARAHHFGNYEAVMGPCLIAAGMGELTRTGDC VAHPRMGFRNKVAAVTTDLPLVPDKPIDFGMLDFCRVCMKCAENCPAEAITQDKDPVA FNGYLRWNTDAKKCAEFRTGNEEGVNCGRCVKVCPWNSKEASWFHDAGIWIGSKGEAA SSLLKSIDDMFGYGTEEVTRYKWWLEWPELYKIRVPGQ" gene 799797..800102 /locus_tag="Dhaf_0712" /db_xref="GeneID:7257679" CDS 799797..800102 /locus_tag="Dhaf_0712" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457212.1" /db_xref="GI:219666777" /db_xref="GeneID:7257679" /translation="MGTFLVFLSGIVFLAGIMFIKPRVKQDRNWKTVLNWALYVLWFA ITGMGISFIYINSSVGHVKATSTAIFLFLGLSVVLAVVLARLLGFIGEQRKNTGLEV" gene 800116..801492 /locus_tag="Dhaf_0713" /db_xref="GeneID:7257680" CDS 800116..801492 /locus_tag="Dhaf_0713" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sil:SPO0589 oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002457213.1" /db_xref="GI:219666778" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257680" /translation="MFRSSDRQNKPQEQKFQMNRRKFLKAGVASALTAGMVGAMRTLP VSAAEAVASTGSSGSVNGARSKLHPKVDYGGASVRFVENNDQWLGTSQIVGTVNRTHE AEQGFNLALRGKLSSEAQVAMYHYNFVMKHPFDGALGIFSNYVSAENIVGGTPNQEKL PIPDPEQMSQNIKDTAYFLRADEVGIGKMPEYAYYSHKAPFSHEELIRDDISHSTPVT EKLPYVIVVMVDQHLETMLASTGYDGISSAQSMRGYHATAVISVILAQYIRNLGYNAR AHHFANYAAAMPPVTIAAGLGELSRTGDCTVHPRLGYRHKVAAVTTDLPLLPDKPIDF GLQDFCRVCKKCADNCPSEAITHDTDMVEYNGYLRWNSDMKKCAEFRLTNSEGSSCGR CMKVCPWNSKEESWFHSAGIWIGSKGETSSRLLKQIDDMFGYGDEIIEKYKWWLEWPE RYTLPKHL" sig_peptide 800116..800259 /locus_tag="Dhaf_0713" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 48" gene 801724..802422 /locus_tag="Dhaf_0714" /db_xref="GeneID:7257681" CDS 801724..802422 /locus_tag="Dhaf_0714" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: drm:Dred_3227 CRP/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002457214.1" /db_xref="GI:219666779" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257681" /translation="MDDGVKRIIQDPLIPEMFHRVEKLEQFLHLARTRTYAKGTIILA QGMEFDEIIYVQQGCLAVSMGADDGHQKFLFHIGEGSIGLSTFLGEYHEIQIHAVKNS TVSFFKVEQILTIFREDEKVIFDILQNLLTKVYYFMGQARDLNFYRPSSRVFRLLYNL CINEGEQVGDHYEINFSLTQKTIGEITGTHYVTVCKLFQMLDRQGIVKKGKDKMVVYD LERLKSLINEIIEY" gene 802728..803138 /locus_tag="Dhaf_0715" /db_xref="GeneID:7257682" CDS 802728..803138 /locus_tag="Dhaf_0715" /inference="similar to AA sequence:KEGG:STH1468" /note="KEGG: sth:STH1468 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457215.1" /db_xref="GI:219666780" /db_xref="GeneID:7257682" /translation="MQSISIFREITLKQIVTEGSKTKAQQQLNEQLTALEKELAELEE NKNRTLTEFSLKGAEEAHLQQIRRQWEMTRAQYQTQRDQIRMEMIAVDELKDGEEVII NSIEGPYELRVGEPVAQAMHAEIILKDDIVVEIR" gene 803135..804760 /locus_tag="Dhaf_0716" /db_xref="GeneID:7257683" CDS 803135..804760 /locus_tag="Dhaf_0716" /inference="protein motif:PFAM:PF00118" /note="PFAM: chaperonin Cpn60/TCP-1; KEGG: mlo:mlr2394 chaperonin GroEL" /codon_start=1 /transl_table=11 /product="chaperonin Cpn60/TCP-1" /protein_id="YP_002457216.1" /db_xref="GI:219666781" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="GeneID:7257683" /translation="MMEGKAQPGITYHAEARQALVRGVTQVAELVRRTMGPQGQNIVI EQKVGYPLITKDGATVAKHVHLPDRKENMGARLCKEVARQTDELTGDGTTTAIVLLQA MLQGGLQLIEAGVEPARLRQGMERAVRLVCAEITRQSYPATMERLEQTAATAAKDSAL GALIAQAMEKAGPLGNITLRESIGRQTYLEFREGLELKCGYLSPYFVDKDQPPTIRME NPYILATDQIIRNLEQIQSILRACDWEKRPLLIVAGHVTGDALGMLVNHRASGTARVV AVRAPGTGMDRLGYLDDLAVVTGGRVIAPHTGLTLETMAKSMLGQAAGVVVSRDKTLV VGGAGDKAGIVRQTKRLMVLQAQTSAGEEKERLQERIAALSGGAAIIQIGADTQMALR EKKDRLNDALKAARAAAENGVVPGGGTSLLQAAKTLDTVQLASQDEEAGVRLVQRALA APLQQIAENGGGNGAKIVRMAGQQEYGWGYDALTGRFTDLWQEGITDPVKVVLTALTK AVGIASLLLTTEALLEKEPMHYIFEAPDFSTMI" gene 804814..805995 /locus_tag="Dhaf_0717" /db_xref="GeneID:7257684" CDS 804814..805995 /locus_tag="Dhaf_0717" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: det:DET0237 transcriptional regulator, putative" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002457217.1" /db_xref="GI:219666782" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7257684" /translation="MKRFLPFILIAALAAAYLYGHFANQMDAALVQDYYRQLMPEAAS YEAINDRTAKAVGSDGAVLAYLGVSSNVGYGGPIMVGTILNQEGSLQGVEILEHKETP AYINKITKAGYFRQYEGKKGNDALTGGYDIELISGATLSTRAIAKSVQEAAHTIVKAE LNQTPQDAKIPWQVGIKEIAVTALVVLSILMPRFPKLRKYRLLFLGLSVVVLGFWLNR SLSMGHISALFMGYFPSPRENLIWYLILAGALLPALFSGKNLYCTYVCPFCGVQEGTH LLSRMNLPLGKYGRWLRAGKEIILFLTLLLAFLFANPSFSSFEPFGTMFGWNGTSYQW YLLFIILVTSFLYRRFWCVALCPVGTFLDKAAQLGRKIKEVIGAAGRKKAGKVELKGE G" sig_peptide 804814..804891 /locus_tag="Dhaf_0717" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.560 at residue 26" gene 805985..806089 /locus_tag="Dhaf_0718" /db_xref="GeneID:7257685" CDS 805985..806089 /locus_tag="Dhaf_0718" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457218.1" /db_xref="GI:219666783" /db_xref="GeneID:7257685" /translation="MKAELSTILPGVAYVLTLILIGLVIFENWTLAIS" gene 806107..807678 /locus_tag="Dhaf_0719" /db_xref="GeneID:7257686" CDS 806107..807678 /locus_tag="Dhaf_0719" /inference="protein motif:PFAM:PF00118" /note="PFAM: chaperonin Cpn60/TCP-1; KEGG: maq:Maqu_2030 chaperonin GroEL" /codon_start=1 /transl_table=11 /product="chaperonin Cpn60/TCP-1" /protein_id="YP_002457219.1" /db_xref="GI:219666784" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="GeneID:7257686" /translation="MERVSLCGEKARQALIEGINSVADCVRITLGPKGRNVVLEPLVG RPKITNDGASIAGIISVPNRFHNLGCQIIREAAEKTNDLAGDGTTTAVVLAQAMIEEG MKQIAAGLNPVCLIKGLERGAAAVVEAVRVQAVKVTELEQVAQVGAISSGDPALGKLL AEAVGKVGFQGIITIEEGKGLQPYLEIKHGISFNKGCFTPKIVKSWERKSEALTDAFI LIVDGRLSTADEIFAVLQLTVKYEKPLLLIAEDIGIDLLALLLANKQKGTMNAVAVQS PGSGERRKEYLQDIAILTGGTVIGEENGIILEEVTEEHLGRAGKILADNNSTTIIGGM GDPRQISLRCSQVRREYEGRLPGWRRGKLAERLGWLQGGVAVVYTGAPTRLELQEQKD RLEDAVNSVRVAVSEGIVPGGGTALLEARRSLSKLGCKEKESEAGLHILYKALEAPLR RIVINAGGDPDAVLETIEELPQGHGYHAAENRFVDMLESGISDPVQVTCAALRSAVSI ATLVIGTGGVVIRGQ" gene 807871..808506 /locus_tag="Dhaf_0720" /db_xref="GeneID:7257687" CDS 807871..808506 /locus_tag="Dhaf_0720" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2093 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002457220.1" /db_xref="GI:219666785" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7257687" /translation="MIDLNASAQAMSDLDEGAINEVVDKVMAKADADAAQELIKAFQQ GMTKVGERFDSGEYFIGDLIFAGEILQAAMDKLKPALSGDALEKRAKIVLATVEGDLH DIGKNIFRTMAEASGFEVFDLGIDVPVKIIVDKVKEVNPEIVGLSGVLTLALDSMRET VDALKAEGLRNDLKVIIGGVPVNENVCQRVGADDFSTNAADGVKICQRWVG" gene 808511..809686 /locus_tag="Dhaf_0721" /db_xref="GeneID:7257688" CDS 808511..809686 /locus_tag="Dhaf_0721" /inference="similar to AA sequence:KEGG:Amet_2087" /note="KEGG: amt:Amet_2087 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457221.1" /db_xref="GI:219666786" /db_xref="GeneID:7257688" /translation="MSEVGNLYQERVERVFKTLRLEQADRVPVLGTYGTWSAYYAGYT DSETNWDTDKCGKAMLKVAGDIPMDMTHQVFNRPGSVYQALGSKAFHYLSESNIVQYS DQSANIMKEDEYREFSGDPFRFFVDKILPRKYRELAQDSPVRDLALTKGAMQFGMYGG KKGAIKAALAQQCKMPLLFDGVILHPLDWIADFFRGIKGVFMDIRRRPEELAEAVEAL TPLVMRFGMGQVHMAPPRPNPKVLMMPLHLPTMLNTKDFNKYYWPSFKKVMEFFAAHD IYVIPFYEGDWSRYYDHLQELPAKKTMGWFEHGEPKELKQKLGNTLCLIGLFPTTLLQ YGTKEECIAKAKELVDALAPGGGYIFGTDKEVISPKDAKAENIIAINKFVMEYGIYS" gene 809702..810511 /locus_tag="Dhaf_0722" /db_xref="GeneID:7257689" CDS 809702..810511 /locus_tag="Dhaf_0722" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002457222.1" /db_xref="GI:219666787" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7257689" /translation="MIIIGEKINGTIPSVKKAIEAKDEKLIRDLALRQSEAGADYIDV CASTSPELEVETLQWLMDIVQEATDTPLCIDSPNPRAIQQVLLYAKRPGLINSVSLEG DKCEVIFPLIQGTSWQVIALTCDNSGIPQDVQSRVEIAQALVEKAQSYDIAQERIHID PLVIALSADNGALLKFAEATRQIKANYPMINVTSGLSNISFGMPLRKVVNQNFLTLAM FAGMDSAILDPLNRDLLAALLATEALLGRDKHCRNFANAYRKNKIGPLKEG" gene 810541..810687 /locus_tag="Dhaf_0723" /db_xref="GeneID:7257690" CDS 810541..810687 /locus_tag="Dhaf_0723" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457223.1" /db_xref="GI:219666788" /db_xref="GeneID:7257690" /translation="MEKQQLLIPWSEIVKEHPELAEKDPAMGMSWDMSQEMIFSYITF LTLF" gene complement(810858..811817) /locus_tag="Dhaf_0724" /db_xref="GeneID:7257691" CDS complement(810858..811817) /locus_tag="Dhaf_0724" /inference="protein motif:PFAM:PF05698" /note="PFAM: trigger factor domain protein; KEGG: lbr:LVIS_1388 trigger factor" /codon_start=1 /transl_table=11 /product="trigger factor domain protein" /protein_id="YP_002457224.1" /db_xref="GI:219666789" /db_xref="InterPro:IPR008880" /db_xref="GeneID:7257691" /translation="MHKLIKLGPYKGLVLPSPVLFTEDDLELGVSEAVKKMANQWGKV HLPAAYGDEVVINLRAESDRLFVPELSKANYTFTLGDPSIYKEFDQLIGLKAGDDWQL VLELPSGFPVERLRGKIVTFYIILLEVIRKRPLELTDEIACQIDPKAGSLEQLKSRLK EVISENWLQSIAEARMKAILNAIFSTSVCELDQQELKEVSDRIFAEKQKQLFTSDNPQ MLEALLSGDNRSLHRESLLLAEEIIVEDLILKEIARIEKIQVEPSEFREAREKFLESA GNEQSFRLIFPTDDALQQHLLQEKVLDCLWEWNNETGLPDTSF" gene 812035..812205 /locus_tag="Dhaf_0725" /db_xref="GeneID:7257692" CDS 812035..812205 /locus_tag="Dhaf_0725" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457225.1" /db_xref="GI:219666790" /db_xref="GeneID:7257692" /translation="MPDYMKMYFQLAAKVADAIDLLQEALEQGEDDFMSDEKENTIVK LFDIKKGKDEDE" gene 812395..812826 /gene="rplM" /locus_tag="Dhaf_0726" /db_xref="GeneID:7257693" CDS 812395..812826 /gene="rplM" /locus_tag="Dhaf_0726" /inference="protein motif:PFAM:PF00572" /note="in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="YP_002457226.1" /db_xref="GI:219666791" /db_xref="InterPro:IPR005822" /db_xref="InterPro:IPR005823" /db_xref="GeneID:7257693" /translation="MSTFFAKANAVERKWYVIDAAGLPLGRLATEAARILRGKHKPTF TPNVDTGDHVIIINAEKVVLTGNKLDQKMYRRHSGYPGGLKETPYRKLMQNMPERAVE HAVKGMLPHNKLGAQMYTKLKVYRDENHPHQAQQPEVWTIQ" gene 812848..813243 /gene="rpsI" /locus_tag="Dhaf_0727" /db_xref="GeneID:7257694" CDS 812848..813243 /gene="rpsI" /locus_tag="Dhaf_0727" /inference="protein motif:PFAM:PF00380" /note="forms a direct contact with the tRNA during translation" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="YP_002457227.1" /db_xref="GI:219666792" /db_xref="InterPro:IPR000754" /db_xref="GeneID:7257694" /translation="MAAQLQYQGTGRRKNAVARVRLIPGEGKVTINKRELAEYFGKKT LEMIVQQPFGVTDTAGKYDVVALAHGGGTTGQAGALRLGIARALLKADPSLRPALKRA GFLTRDPRMKERRKYGLKKARKAPQFSKR" gene 813384..814001 /locus_tag="Dhaf_0728" /db_xref="GeneID:7257695" CDS 813384..814001 /locus_tag="Dhaf_0728" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457228.1" /db_xref="GI:219666793" /db_xref="GeneID:7257695" /translation="MKEDDIGLLIFLILMCFILSMAWIETRRKHINYYGKERPEYQGR TRQNLTREPKAIECPGCGAKNLVAHSVGKCDFCDSLLNYETEAESLPAGFYTVETDIP ADTCIEKYKPLNGYAWGVIICLGVIVFKVFQAFKDGQGAVYVYFMSVLFVLCLFVASF IGIFYSLAKYKDHHCELNWVKLMKNIYVWGFIISSIILYTELSVF" sig_peptide 813384..813452 /locus_tag="Dhaf_0728" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.619) with cleavage site probability 0.617 at residue 23" gene complement(814060..814947) /locus_tag="Dhaf_0729" /db_xref="GeneID:7257696" CDS complement(814060..814947) /locus_tag="Dhaf_0729" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: drm:Dred_0442 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002457229.1" /db_xref="GI:219666794" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7257696" /translation="MKNGYVLIVLAALGFAALPIFIKYGYNVGLTTEVMLFLRFLIAS VLLSFIMLVNKKGLHMNKSDLPKLVVQGLVFFGSSYCYTLAIKHMSASVTNILLYTYP LMVVLMATMIFKEKVSLVKALTLLLSFLGCLMVIDVIHTSTHQISMLGILYGIGSAIF YAIYNINGQYLSKTLEPVTISTYTSVVCLFATMVIYPPVNIFAGHSFQAMWIVGLGTA ILSTIIPLFCYQKGVSLLGASQASILSNIEPVIATVLAFLILGETLSVIQLSGAFLII LGGLLLKLDKGKQPGTLNS" gene 815268..815630 /locus_tag="Dhaf_0730" /db_xref="GeneID:7257697" CDS 815268..815630 /locus_tag="Dhaf_0730" /inference="protein motif:PFAM:PF03965" /note="PFAM: Penicillinase repressor; KEGG: cpy:Cphy_2324 CopY family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="YP_002457230.1" /db_xref="GI:219666795" /db_xref="InterPro:IPR005650" /db_xref="GeneID:7257697" /translation="MEQYKLGEMEQKFADLIWHHAPIPSGELVKLCEKELSWKKSTTY TMLKRLCDRGIFENQKGRVIALMSREDFTAAQGEQFLSETFGGSLPRFFAAFTRRNKL SAKEINELQQLIDQHKEE" gene 815633..817792 /locus_tag="Dhaf_0731" /db_xref="GeneID:7257698" CDS 815633..817792 /locus_tag="Dhaf_0731" /inference="protein motif:PFAM:PF05569" /note="PFAM: peptidase M56 BlaR1; KEGG: cth:Cthe_3127 peptidase M56, BlaR1" /codon_start=1 /transl_table=11 /product="peptidase M56 BlaR1" /protein_id="YP_002457231.1" /db_xref="GI:219666796" /db_xref="InterPro:IPR008756" /db_xref="GeneID:7257698" /translation="MQEELFLKVLNMSITGSAVILCVVLMRFLLRRAPKVFSYALWSV VLFRLVCPFSFESALSLLPVNPEPIPHRIVYAAVPQIQTGITAVDRVVSSSLPGATPY ASVNPLQIWVFLGSLLWIMGIAVLLLYSVFSLLSLKRRLKDAVHDKENIYLCAGLDTP FVMGVLRPRIYLPASLSGAEKEYILLHEQTHIRRFDHVVKILSFFVLCIHWFNPLVWA AFFLSGRDMEMSCDEAVIRKLGHEVKKDYSSSLLSLATGRPIVGGTPLAFGEGDTRGR IMNVLNYKKPGFRVLLFAFLAVFILGMGMMANPKAGENFTAAVYRVDEILYSAPQYSF GYTRDTAPEYNISSDYVLFRREISDQDWVMLGSLYEYPLSRQEQYGLFDPLNNKAHEN LDKVKTIYRADLKDENQTLILVMEQKNGHVLLAHGYDHPGNPRVRWLFHLDKVVEPDA NGQAGQVKPQDDRAAGTTEAEPMAKEQDPLEKAVSAAILQHNRSEYTGGDFSAQAHTT LATETGESVTGIGTVTVYAMALYMEFGYRGGGLSETGGSHMPVALTFEVEDKNTYRLM EYWTPQNGAGYGPSIREKFPEKIAGGALDTQKYIQAHAMACYEQAIAHGQVDVGGEIA GLIETICSSPAHMSNPGAYIDAHPLEYRTLVYYGSYTLEYCFDLFAQGGQRGLEGHIM AAACRDIMMAKGASFDDMLYNTGQDWYDSIKDWAVPS" gene complement(817893..818828) /locus_tag="Dhaf_0732" /db_xref="GeneID:7257699" CDS complement(817893..818828) /locus_tag="Dhaf_0732" /inference="protein motif:PFAM:PF05698" /note="PFAM: trigger factor domain protein; KEGG: sez:Sez_1723 cell division trigger factor Tig" /codon_start=1 /transl_table=11 /product="trigger factor domain protein" /protein_id="YP_002457232.1" /db_xref="GI:219666797" /db_xref="InterPro:IPR008880" /db_xref="GeneID:7257699" /translation="MHKFLMGPYKELNLKPLPEFTEDDLNRAVIESTLKLLNEWSKKN KPAEFGDEVIITLNPVCDGIFVPELANSNFKYTVGDPSMLEQFKQVIHCKAGDPFKMD ILFPESAPLQRIRGKTVTFDAEVLEVINHSRQLEFSDEIAKQIDPRVSGMEELKNNLR SIITANWSQVIAENKLELIFETILAQSEYEFDEEEFQKAYADTLAETRQRMISSENLT MMSSLLSEDDEYFYEDCRLLTQKTILRQLVLDEIARLEAIGVTPDEIQEEKKRHTPFP DEEAIGQHLIEKKVARLLLEWNYKNGQTPGSFSIH" gene 819021..819719 /locus_tag="Dhaf_0733" /db_xref="GeneID:7257700" CDS 819021..819719 /locus_tag="Dhaf_0733" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; KEGG: drm:Dred_3227 CRP/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002457233.1" /db_xref="GI:219666798" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257700" /translation="MSVEGLGKDFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVI MPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTGNNIYATAMEPT RTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYEL CSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLACLKRENILDKKKNKIIVYN LGELKHLSEQTSYY" gene 819830..820243 /locus_tag="Dhaf_0734" /db_xref="GeneID:7257701" CDS 819830..820243 /locus_tag="Dhaf_0734" /inference="similar to AA sequence:KEGG:PTH_1721" /note="KEGG: pth:PTH_1721 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457234.1" /db_xref="GI:219666799" /db_xref="GeneID:7257701" /translation="MSSITIFREIILKQIVTEQGKETSRRELREQLVALNNEQLEFEE NKKKNLTEFSLKGAEGAQLDRIRQKFDAEAADFHIRRDQLRMNMDALEELAVGEEVVM GSVEGPYDLQVGDDLNRAVKAEIIVKDGIVVEIRQ" gene 820240..821787 /locus_tag="Dhaf_0735" /db_xref="GeneID:7257702" CDS 820240..821787 /locus_tag="Dhaf_0735" /inference="protein motif:PFAM:PF00118" /note="PFAM: chaperonin Cpn60/TCP-1; KEGG: mta:Moth_0546 chaperonin GroEL" /codon_start=1 /transl_table=11 /product="chaperonin Cpn60/TCP-1" /protein_id="YP_002457235.1" /db_xref="GI:219666800" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="GeneID:7257702" /translation="MSVRRALVSGVDQVADMVKLTLGPWGKNIVIERRWGYPLITRDG VTVANSINLPDSQENLGAKLCKEAAARTNDLVGDGTTTSIVLAQALAKEGLSLVEAGL DPMQFKKGLEKAADYAIAEIQRLSIPVTAPVGVGQVAAISAKSVPVGELIARAMARVG PDGTITVEESIERHTYVEVTEGLELNSGYMSAYFLDESEEMTGQLENPYILITDHILQ EISEVKRILNWCAWEKRPLLIIAGNMTRDVLGMLIAHNKANREKVVVIKTPGQGDYRQ DIMEDLAIVTGGTVVAKSLGMILATIEKPMLGTSRKAIVTRHKTTVLGGAGTPESIQE QVRQLKVILKQTTNPEEGAQLQQRISALAGGIAVIRVGAATQIALKELKDRVVDAVHA AKAAVESGIVPGGGTVLIRAAQALEQVQSATDYEKAGIKLVQKALEAPLQQIVSNSGG NGKKIVEMTKTLGNELGYDALSGKFVDWAAAGIVDPAKVAMTALRNALGIVSIMLTTE GKVEKFR" gene 821881..822192 /locus_tag="Dhaf_0736" /db_xref="GeneID:7257703" CDS 821881..822192 /locus_tag="Dhaf_0736" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457236.1" /db_xref="GI:219666801" /db_xref="GeneID:7257703" /translation="MGTFLVFIAGVLFLAAILFIKPRAQKAELWKTVLNWALFVLWYG ITWMGISYIYLNAKAGHVKATSTAVFVFLGISVVLGFILARLLGFINLKKTESRNTVE A" gene 822205..823542 /locus_tag="Dhaf_0737" /db_xref="GeneID:7257704" CDS 822205..823542 /locus_tag="Dhaf_0737" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: sit:TM1040_3578 reductive dehalogenase" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002457237.1" /db_xref="GI:219666802" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257704" /translation="MENNQKRQQSGMSRRSFLKVGAAATTMGVIGAIKAPAKVANAAE TLNYVPGSGKIRSKLRPVHDFAGAKVRFVENNDQWLGTTKILTKVKMTSEADAGFMQA VRGLYGPEPQKGFFQFIAKDPFGGSISWARNLIAPEDVVDGAPEATKTPIPDPEQMSQ HIRDCCYFLRADEVGIGKMPEYGYYTHHVADTVGLMTKPVEECVTPVTKIYPNVIVVM IDQGIETMWASTGYDGISGAMSMKSYFTSGCIAVILAKYIRTLGYNARAHHAKNYEAI MPVCIMAAGLGELSRTGDSAIHPRLGFRHKVAAVTTDLPLAPDQPLDFGLLDFCRVCK KCADNCPNEAISFDEDPIEYNGYLRWNSDFRKCTEFRTTNEEGSSCGTCMKVCPWNSK EDSWFHKAGVWVGSKGETASTFLKSIDDIFGYGTETIEKYKWWLEWPEKYVMK" gene 823636..824814 /locus_tag="Dhaf_0738" /db_xref="GeneID:7257705" CDS 823636..824814 /locus_tag="Dhaf_0738" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: sse:Ssed_3767 sulfite reductase alpha subunit (flavoprotein)-like protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002457238.1" /db_xref="GI:219666803" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7257705" /translation="MRNYITLIAVIMLIVTGVYAKHADKMDADLVQGYYRELVADAAG FEPINDRTAKAIGQDGSVSAYLGIESNIGYGGPLLVGTVLSAEGAVKAIVILEHKETP SYIHKITKAGFFRQFDKKQAGDALTFNYDVDGVSGATLSTRAIASSVQSVAHTIAQAE LKITPRKAEVKWSIGIQEMVIALLFLLSYCMPRFKQLAKYRFPFLLLSVVILGFWLNR SLSMGQISALFLGYFPVPGENLLWYIVLIGAFAPAIVTGKNLYCTYVCPFCGLQETAH KISRINLALGKYMKWIRLGKEVILFLVLFLAFLALNPSVSSFEPFGTIFGLNGSSYQW YLLFVILLSSFFIRRFWCHVFCPVGTILDKAAGLSRKVKNKLGPLINTKKAVGVKHGK" sig_peptide 823636..823698 /locus_tag="Dhaf_0738" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.969 at residue 21" gene 824804..824938 /locus_tag="Dhaf_0739" /db_xref="GeneID:7257706" CDS 824804..824938 /locus_tag="Dhaf_0739" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457239.1" /db_xref="GI:219666804" /db_xref="GeneID:7257706" /translation="MENKVISHKGKKAGKLDKGSVSLLIFYGLITLFALLVILEAWNS" gene 824962..826533 /locus_tag="Dhaf_0740" /db_xref="GeneID:7257707" CDS 824962..826533 /locus_tag="Dhaf_0740" /inference="protein motif:TFAM:TIGR02348" /note="TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: dth:DICTH_0813 chaperonin GroL" /codon_start=1 /transl_table=11 /product="chaperonin GroEL" /protein_id="YP_002457240.1" /db_xref="GI:219666805" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR012723" /db_xref="GeneID:7257707" /translation="MSTIMLSGEEARRALSTGIEQLASCVKITLGPRGRNVVLGPHRG MPRITNDGVSIAKNIALADPFQNLGCSIVKEVSEKTNDRVGDGTTTAIVLAQALVREG MKAVAAGVNQTSLIKGLEKGAEIVDAALKAKAVRIVSPAEVARVATVASGDEEIGNLI AAAVQRVGFNGIIRVEEGKTQTTFFEVLEGIRFDKGCFTPKVVSSWDNKTEVLEDPYI MVTDHKISYIYEIFEVLEVAVKAKKPLVIIAEDISIDILALLLTNKKKRTMNVVAIQT PGYGERRREYLQDIAVITGAAVISADSGLQLEDVREEHLGRAKQIMVDNNRTTIMGGS GDKARIAARAAEACQEFASRLPGWKKEKLQERLGWLQGGIASLKVGAPTMLELKEKKD RIDDAVNAVQAAIKEGIVPGGGMALLRACESLIQIKPEEPEEEAGLRIMQQALEEPLR QIAYNAGHNGDVILDKVRELPENWGYNAAEDRCVDMLEAGIIDPVEVTCTALRNAVSI AVLVIGAEGLIIERN" gene 827047..827478 /locus_tag="Dhaf_0741" /db_xref="GeneID:7257708" CDS 827047..827478 /locus_tag="Dhaf_0741" /inference="protein motif:TFAM:TIGR01753" /note="TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: amt:Amet_1116 flavodoxin" /codon_start=1 /transl_table=11 /product="flavodoxin" /protein_id="YP_002457241.1" /db_xref="GI:219666806" /db_xref="InterPro:IPR001226" /db_xref="InterPro:IPR008254" /db_xref="InterPro:IPR010087" /db_xref="GeneID:7257708" /translation="MKKIVVIYWSGTGNTEKMAAGVAEGARAAEAEVRIIPVGEASVT DVLSADGVALGCPAMGSEVLEEDEMEPFVCSLEQENLSAVPVVLFGSYDWGDGEWMRD WEERMKKAGANLAGDGLILQLEPDNDGMEQCRKLGKTLAEA" gene 827623..828171 /locus_tag="Dhaf_0742" /db_xref="GeneID:7257709" CDS 827623..828171 /locus_tag="Dhaf_0742" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457242.1" /db_xref="GI:219666807" /db_xref="GeneID:7257709" /translation="MNNNDQVTKSAHRHHGHIHTHGCSSDGCGCSSQTAEKETACCCS HKPLVLDPQETVFIQALAQQGCLPVSRYILSSSSEKEVRFEMLAPVYMNDPSDGIEIV KEKGAALKGLKEKGLISLDYDLRLTDYDYKPYTEAALFAYFKDTVEEGKKRPGFLGDT AEIELGAITLTDAGKRIAEQLT" gene 828657..829280 /locus_tag="Dhaf_0743" /db_xref="GeneID:7257710" CDS 828657..829280 /locus_tag="Dhaf_0743" /inference="protein motif:TFAM:TIGR02046" /note="TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: bpu:BPUM_2503 succinate dehydrogenase cytochrome b558 subunit" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family" /protein_id="YP_002457243.1" /db_xref="GI:219666808" /db_xref="InterPro:IPR004224" /db_xref="InterPro:IPR011138" /db_xref="GeneID:7257710" /translation="MSNEVGLRRAESGSYHFLIRRVHSLLGLLPIGIFLTFHLFLNLS ARLGPGQYDKVIQTMQSVPGIFLIEMIIIFVPIIFHAVYGSWVVYTGQSNVLRYQYPR NWFYIIQRISGIYTVIFVAVHVFALRFGEASFAGMQSAVANPWGLIFYVIGVVLAIFH FTNGLWAFAITWGITVGPRAQQIWTYACLAVFVLLTAIGLYDLTAFM" gene 829337..831073 /gene="sdhA" /locus_tag="Dhaf_0744" /db_xref="GeneID:7257711" CDS 829337..831073 /gene="sdhA" /locus_tag="Dhaf_0744" /EC_number="1.3.99.1" /inference="protein motif:TFAM:TIGR01811" /note="part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase flavoprotein subunit" /protein_id="YP_002457244.1" /db_xref="GI:219666809" /db_xref="InterPro:IPR003952" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004112" /db_xref="InterPro:IPR011280" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257711" /translation="MSKVIVVGGGLAGLMAAIKIAEEGTPVDLFSLVPVKRSHSVCAQ GGINGAVNTKGEGDSPWEHFDDSVYGGDFLANQPPVKAMCDAAPGVIHLMDRMGVMFN RTAEGFLDFRRFGGTKHHRTAFAGATTGQQLLYALDEQVRRFEAAGLVRKYEGWEMLS AVIDEGVCKGIVAQNLYNMEIQSFPAAAVIVAAGGCGMIFGKSTNSTINTGSVASALY QQGVKYANGEFIQIHPTAIPGEDKLRLMSESARGEGGRVWTYKEGKPWYFLEEMYPAY GNLVPRDIATRAIYHVVFDLGLGVNGENMVYLDLSHKDSHELQIKLGGILEIYEKFVG DDPKKVPMRIFPAVHYSMGGMWVDYDQMTNIPGLFAAGECEYQYHGANRLGANSLLSA IYGGMIAGPKSLEYIKKNKSETSSGEEEVFVRERRAQEELWNRILTMKGEENPYHIYK ELGDVMTQNVTVIRYNDKLAGTDQKIQELMQRWQKIQLIDDVQWSNQTALFIRQLWNM LELARVITLGALNRNESRGAHYKPDYPERDDANWLKTTIATYTPEGPQFSYEAVDVSL ITPRPRRYDVEK" gene 831085..831837 /gene="sdhB" /locus_tag="Dhaf_0745" /db_xref="GeneID:7257712" CDS 831085..831837 /gene="sdhB" /locus_tag="Dhaf_0745" /inference="protein motif:TFAM:TIGR00384" /note="part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase iron-sulfur subunit" /protein_id="YP_002457245.1" /db_xref="GI:219666810" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR004489" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257712" /translation="MSGQKSVRLKIRRQNAPDQPAFWEEFAVDYSPKMNIISCLMEIQ KNPVNVQGKKTNPVVWECNCLEEVCGACTMNINGQARQACSALVDQLEQPIVLEPLRK FPILRDLMVDRTIMFENLKRVHAWIDIDGTYDLGPGPRMAEVDRVWAYELSKCMTCGC CMESCPQVNSRSRFIGPAAVSQARLFNTHPSGAMHKHIRLSALMGDGGITDCGNAQNC VRACPKEIPLTTSLADMNREVNKFALKRWLNT" gene 832208..833095 /locus_tag="Dhaf_0746" /db_xref="GeneID:7257713" CDS 832208..833095 /locus_tag="Dhaf_0746" /inference="protein motif:TFAM:TIGR02995" /note="TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpt:Bpet2825 putative extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="ectoine/hydroxyectoine ABC transporter solute-binding protein" /protein_id="YP_002457246.1" /db_xref="GI:219666811" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR014337" /db_xref="GeneID:7257713" /translation="MKKLPLLKTLLVGVLAFSVFALGGCGTTETKGGDGMSTLEKAKE KGSVTVGFANEKPYAYKTADGKLTGEAVEIARAVLKELGINDMQGELTEFASLIPGLQ AKRFDMVTAGMFITPERAEQVSFANPEYSIGEAIAVKKGNPLDLHSYEDIAKHGTAKV AVPGGAIEYDYLVASGVPKDRIVTVPDMPAALAALQAGRTDVITATGPSIQATLDTAN DPNLERVMDFTQPVIDGESVRGYGATAFRHEDSDFREAFNAELQKLKESGELLKILES FGFTEQELPGDTTVEDIIK" sig_peptide 832208..832279 /locus_tag="Dhaf_0746" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.328 at residue 24" gene 833108..833752 /locus_tag="Dhaf_0747" /db_xref="GeneID:7257714" CDS 833108..833752 /locus_tag="Dhaf_0747" /inference="protein motif:TFAM:TIGR03004" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; ectoine/hydroxyectoine ABC transporter, permease protein EhuC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00888 ABC-type amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="ectoine/hydroxyectoine ABC transporter, permease protein EhuC" /protein_id="YP_002457247.1" /db_xref="GI:219666812" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="InterPro:IPR014342" /db_xref="GeneID:7257714" /translation="MAILDLLPALLKGLEITLIITLLATLLALVLAFLAGFGRLSKYP PLRFLAAVYVEAFRGTSLLVQLFWIYFALPILGISLPPLTAGVLTLGLNCGAYGSEVV RSAILAVPKGQTEAGIALNFSPWQRMRRIILPQAFVMMLPGFGNLQIELLKSTSLVSL ITLADLTYQASVLNASTMETTLIYSLLLVIYFLIAWPLTRGIRWIENRLTVGRY" gene 833754..834410 /locus_tag="Dhaf_0748" /db_xref="GeneID:7257715" CDS 833754..834410 /locus_tag="Dhaf_0748" /inference="protein motif:TFAM:TIGR03003" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; ectoine/hydroxyectoine ABC transporter, permease protein EhuD; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0912 amino acid ABC transporter permease" /codon_start=1 /transl_table=11 /product="ectoine/hydroxyectoine ABC transporter, permease protein EhuD" /protein_id="YP_002457248.1" /db_xref="GI:219666813" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="InterPro:IPR014341" /db_xref="GeneID:7257715" /translation="MWNWDFAIKIFPEIFAALKITVTATFAGFFLALFLGMFLTIGSR SSLKPIAYGSKGFVEFIRSTPLLVQLYFIFYVLPQAGLSLSPLTAGIMGLGIHYSTYL SEVYRSGIEAVPQGQWEAAKALNFSPWQVWSKIIIPQAVPPVIPVMGNYLITMFKETP LLSAITLVEILQTAKIIGSHSFRYLEGFTIVGFLFLLLSYPCSVMIRRLEMRMTKSVR" gene 834422..835270 /locus_tag="Dhaf_0749" /db_xref="GeneID:7257716" CDS 834422..835270 /locus_tag="Dhaf_0749" /inference="protein motif:TFAM:TIGR03005" /note="KEGG: gtn:GTNG_2279 amino acid ABC transporter ATP-binding protein; TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ectoine/hydroxyectoine ABC transporter, ATP-binding protein" /protein_id="YP_002457249.1" /db_xref="GI:219666814" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR014343" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257716" /translation="MSAQLKLLKNTPDETKNQQTVAGKKVKQPVVHYEKISKAYGDLQ VLKGIDLDIAPGEKVALIGPSGSGKTTMARLLMTLEEPTSGAIQVDGESLWQQRVKGK MVKANEKHLHKIRNKIGMVFQHFNLFPHMTILGNVTAAPIHVLGMTKDDAEAQAIVML EKVGLGDKLHGYPAQLSGGQKQRVAIARALVMRPKIMLFDEPTSALDPELVGEVLEVI KEIAQEGEMAMLLITHEMDFAKDVADRVVFFDEGHIIEEGPPREIFHNPQSPRLQNFL SRFRGR" gene complement(835344..835883) /locus_tag="Dhaf_0750" /db_xref="GeneID:7257717" CDS complement(835344..835883) /locus_tag="Dhaf_0750" /inference="protein motif:TFAM:TIGR00731" /note="the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25/general stress protein Ctc" /protein_id="YP_002457250.1" /db_xref="GI:219666815" /db_xref="InterPro:IPR001021" /db_xref="GeneID:7257717" /translation="MSETAIQAVERKEKPKEVRSKGFVPGVIYGKGMDSISVKFDEKR LNKALQGRSQKAKISVQVAGETKQCFVGEIQKDITSGKTIHISMQVVEDDQVVKMKVP ITFGGSEALSERKLIVLPYFSELELTGPSADIPEYVAVDVADKSLGDKITVADFMVSP SVSVLDDPEKIIAAITGAR" gene 836249..837010 /locus_tag="Dhaf_0751" /db_xref="GeneID:7257718" CDS 836249..837010 /locus_tag="Dhaf_0751" /inference="protein motif:PFAM:PF01520" /note="PFAM: cell wall hydrolase/autolysin; KEGG: swo:Swol_2295 N-acetylmuramoyl-L-alanine amidase-like protein" /codon_start=1 /transl_table=11 /product="cell wall hydrolase/autolysin" /protein_id="YP_002457251.1" /db_xref="GI:219666816" /db_xref="InterPro:IPR002508" /db_xref="GeneID:7257718" /translation="MRRMRRDGLNYRRRWNRGWMVAALFALVLIVTGSLVWKYNQKDE EIWSWTIGNQVVLIDAGHGGVDPGAVGKVSLEKDITLNISKHLQLLVQQSGGKPVMVR EADVDLGTSEGLARRKREDLAQRIQLAKDFEADVYLSIHVNSSPNHSLTGPQVFYHEG LPEGKLLAEAIQTELNKLTGTKRVAKADQELFILKKAPQAAVTVEVGFLSNPQEEQKL NETDYQHQLSVAIYQGLSEYCRKLQKEGIPIVDIN" sig_peptide 836249..836365 /locus_tag="Dhaf_0751" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.649 at residue 39" gene complement(837105..838907) /locus_tag="Dhaf_0752" /db_xref="GeneID:7257719" CDS complement(837105..838907) /locus_tag="Dhaf_0752" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_2080 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457252.1" /db_xref="GI:219666817" /db_xref="GeneID:7257719" /translation="MFRKFMRRSFTLTLIFLLMCSTYVSAVPLLPWLPEPLVHSTQII EDRLEMTGPTTGIFHYKLFDKNGKDITSEFPVSDLFVEAKTSSGWNTLGVAKASLDPQ TGTCTLTYNFSEADKYIYINISPRYSRGAYERLIVGNSDEESLKRVDELHILTDSLTS SGANTATFRYNIINFIDDITPKIPASQIEAFSAPGSEITLDPDTGTGTIAFDTLDTDQ LIQTTLRDKLTGVTAVLNTFGLKPVPASQVTTPSAISRVDFVSSDLVKTETGTATFQY KLLDHYYTNITKTIPSEQLKATAVINSTHADVSLDPETGTGTITYDFSDNDEQVLVTL AHQKGMEISALLNLHSPSGYEASDTENNTDEDLDIAQISFLPTGKLSPNITTYLQYRI LNKEGKDITPKIPALELYASSSVNSMIDLKPSDRDFKITYNVHDSDKTILVSLEDKAT GVKTAINIGDMPPEPGSEDTSIDNTALTFKDPVLEKAVRELIYKPTAEIYKNDVKNIL NLFIGKGCEDLSGIENLTGLASLTIHSDQLGDLSPLKELPKLRSLNYQGTLNDLKSLE QLTHLTLLEIGSATLGNYDLSSIQQALPNCYIIH" sig_peptide complement(837105..837185) /locus_tag="Dhaf_0752" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.988 at residue 27" gene 839110..839724 /locus_tag="Dhaf_0753" /db_xref="GeneID:7257720" CDS 839110..839724 /locus_tag="Dhaf_0753" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457253.1" /db_xref="GI:219666818" /db_xref="GeneID:7257720" /translation="MTFLPVLLFILGVLCLVWAMRMGNTSGKTSPEILTILQGLAGVK KEISKVQKGLREVETQLGDHELRLFRNENVQADLRTEVNAQKININQLTSSAVNTFAQ PQPQMKPQPYLSANPLNSSQGTNHYHRLYDNGNTLSDSPLEPLDRYTEVEPLSPMLPE KYQWVLELDQQGWSVAEIAGHLAISRDAVNMVLRTALKGKGLKA" sig_peptide 839110..839193 /locus_tag="Dhaf_0753" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.933) with cleavage site probability 0.508 at residue 28" gene 839721..840200 /locus_tag="Dhaf_0754" /db_xref="GeneID:7257721" CDS 839721..840200 /locus_tag="Dhaf_0754" /inference="similar to AA sequence:KEGG:STH879" /note="KEGG: sth:STH879 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457254.1" /db_xref="GI:219666819" /db_xref="GeneID:7257721" /translation="MKLSRSYILGLASGLILSALLAMVIPPVSINFAGSSPPEQTGPG GNTPGSESRGEVPDPGEDENREGNNNPELPENPVKPDETGENPIQNPQPSQTFVIPSG STADRIAGLLLDEGWISSKDEFLDLVKQKNLAGRFQAGSFELIQGMDMEEILKQLIP" sig_peptide 839721..839822 /locus_tag="Dhaf_0754" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.429 at residue 34" gene 840479..841384 /locus_tag="Dhaf_0755" /db_xref="GeneID:7257722" CDS 840479..841384 /locus_tag="Dhaf_0755" /inference="protein motif:TFAM:TIGR01229" /note="TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: bha:BH2984 arginase" /codon_start=1 /transl_table=11 /product="arginase" /protein_id="YP_002457255.1" /db_xref="GI:219666820" /db_xref="InterPro:IPR005924" /db_xref="InterPro:IPR006035" /db_xref="InterPro:IPR014033" /db_xref="GeneID:7257722" /translation="MERRKVRIIGVPIDLGADRRGVDMGPSAIRYAGLHERLKKLGWE VEDVGNIDVPIAETREIKDPLLKYLPEISEVNQKLYPLVAQAIKEEVIPLIIGGDHSL GIGSLAGCAASGKQFGVIWFDTHGDYNSMETTSSGNIHGMPLAVANGIGVKELTSIGG AARKIKEENTVIIGARDFDDEERAMIRQSGITVFTMSDIDRLGMEAVVRQGLEIANRG THGVHISFDLDVLDPSEAPGVGTPVQGGMTYREAHLAMEMVADCRCLLSMDVVEVNPI LDAQNKTAELAVGLISSAFGQKIYP" gene 841537..842085 /locus_tag="Dhaf_0756" /db_xref="GeneID:7257723" CDS 841537..842085 /locus_tag="Dhaf_0756" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sfu:Sfum_3887 RNA polymerase, sigma-24 subunit, ECF subfamily" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457256.1" /db_xref="GI:219666821" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257723" /translation="MEDAELIQQVLKGRHEQYGLLVQRYQEPLIHFLRGILGAEDEVF DCAQEAFLAAYGNLWRYSDKYTFRAWLYAIARNKAIDLMRKRKREIPLSIDESLVDRQ MGPEEAYLAKEQALDVRAILEELPEHYRQALYLRYQQELSYEEISTVLNIPISSVKTH LHRGKEKLRQIMEGRNGHEGNG" gene 842069..842542 /locus_tag="Dhaf_0757" /db_xref="GeneID:7257724" CDS 842069..842542 /locus_tag="Dhaf_0757" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457257.1" /db_xref="GI:219666822" /db_xref="GeneID:7257724" /translation="MKEMDDLLKSVFQDKPIAQEPLQEMQARIIEQILAAPVDFQAKR LVRQRRKWGTIFLSGLFVLSLSLFLINWFLGPWLGGGLNTFVLWLTANIPMLAWLQNR WDWFLDTLAILSNLKIGYQFLWQQYGLAVMGILFSWVLFEGIRDKLNSTTIDGNS" gene 842561..843742 /locus_tag="Dhaf_0758" /db_xref="GeneID:7257725" CDS 842561..843742 /locus_tag="Dhaf_0758" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mta:Moth_2292 peptidase M20D, amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_002457258.1" /db_xref="GI:219666823" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="GeneID:7257725" /translation="MDALKMFFRDQACIVWKEAWEAARLIGERPELGYQEYFAVETLT QLLKSHGFEIQQPAAGLDTAFIARFSGYKPGPRLAFLAEYDALPGIGHGCGHNLIGAA SVGAAIALSKSLELPGEIWVVGSPAEETSGGKVILVNEGAFEGVDAALMFHPGSQNAT IISSLALDALEFVFLGKAAHAVAAAYYGVNALEALIDFFNRTNRLKDNLPQDAYINGI ITEGGTSPNVIPERAVARFYLRARQRKVLNIIRNQVIRCAQEAASAVSAKVTWNMFEN SYDEMQSNRALAGAFETNLRELGVRNISPPQSAMGSVDMGNVSRIVPAIHPYLTLGGG MNIPHTRDFAQACLSAPGERLLLLAIQALALTGWDILSSPKLLNLAKRELNPRPSGKQ R" gene 843936..845165 /locus_tag="Dhaf_0759" /db_xref="GeneID:7257726" CDS 843936..845165 /locus_tag="Dhaf_0759" /inference="protein motif:TFAM:TIGR00619" /note="TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cpe:CPE0215 exonuclease" /codon_start=1 /transl_table=11 /product="nuclease SbcCD, D subunit" /protein_id="YP_002457259.1" /db_xref="GI:219666824" /db_xref="InterPro:IPR004593" /db_xref="InterPro:IPR004843" /db_xref="GeneID:7257726" /translation="MRILHTSDWHLGKNLEGLSRMEEQELFLKDFIEIVEAKQVDLVM IAGDVYDSPNPPAKAEKMFYDTLKKLSANGERLTLVIAGNHDNPERLVAAGPLARDHG IIMVGTPKTIVAQGEYGRHQVINSGEGFVELEINGEKAVILTLPYPSEKRLNEVLYDA MDEEEERLKIYGDKIKMLLDSLSEKFREDTINMVVSHLFAAGSEESGSERSIQLGGSF IVDGSCFPKAAQYIALGHIHKPQIVPGTDKRARYAGSPIHYSKKEIHFAKKCFIVDLR PQQEYALEEVDFKVYKPIEVWKCGSIEAALQKCEENKDRECWVYLEVNTDRYIREDEL KLMKSTKKDILEIVPVLPGRESEECTLNSFAEQKFEDIFKEFYRKERTVEPQQEIVEL LLSIIQEQEGEESHETH" gene 845152..848649 /locus_tag="Dhaf_0760" /db_xref="GeneID:7257727" CDS 845152..848649 /locus_tag="Dhaf_0760" /inference="protein motif:PFAM:PF02463" /note="PFAM: SMC domain protein; KEGG: cac:CAC2736 ATPase involved in DNA repair" /codon_start=1 /transl_table=11 /product="SMC domain protein" /protein_id="YP_002457260.1" /db_xref="GI:219666825" /db_xref="InterPro:IPR003395" /db_xref="GeneID:7257727" /translation="MRPIKLKIKGLNSFIDTQEIDFSQLTSRGLFGIFGPTGSGKSTI LDGMTLALYGAVARGSTNYMNTNCESLQVSYEFQIAEKDTKTYRVDREFRRDKKSGNV RTHSAKILLITAGGETVLEEQVREVTKKSEEIIGLTLEDFTRTVVLPQGKFSEFLRLE GRDRREMLERLFNLQRYGDELSSRLGARIRQELDKANVLAGQLKSYEECSEELLEAKN KELSSLEERLVQFQAELKKAAEDFHNGKEVWELQEELNRQEVQKTELEKTEAVIKESE IQATLGERSLRVKPYLDQYEDTLGKIATTQVQVAQLEGDTAALSLQKKEAEAQWEQAG AQKDKVLPALRLREQSAADAILEKKKLESLIQEKKSLQENIGRLEQEREEKQGRVHKG EEFIAKVNADIQEKEQKVEALTIDQEFKQKINEALLTFSRWEEAGQQVVSLGSEVKII DEKLQEAQEKGLKFSQELEAKTEILQGFALTLQNLEETCPGDSETLVTLQEKLNQVKE QWARHHEYSAAISRSEAGIRDLLPKLDTAQQQKAQLTQKITELESALKKIERENLAYA LRVALVEGEACPVCGSTHHQPDHGNAAVGTEKLEEIQAALREKKEHEQSLYQEMIQAQ EQIKTLESTVKDCREKTAALGEAYKAYDPEAMQKEFETLRDGISRYTKQKGELEAEIN RLTQEKNQLAIKLNEQNTIKAETKAQLESRGKNLELAKAKYEAYEQELTALRAELNIQ DLKQEHQEIAAKEKEKAGLESELKGLRDTLKKAQARKEFLSTELSALTESLKESLGTL KEKESSIQDKHTAIKAKVGEVENIETYQKEVLSQITRIEQIYAQAETRKNETEKQYNE CYVRLQSAHTSRQGLAERSQKDKESLDKVLQEEQIENIEEAKSHLLSRDEIEKLKKQV KDYQDSLTQIFGAIGNLQKKLGGRSLTAERWEQLQRHKEEKEILCKGLEESKIEIETH VKTMKENLVKKKDLLKSQAELERQLGLLRDLEKLFRGKRFVEFVAAHQLKYVSMEAGK RLREITGGNYGLEVDQNGKFLIRDYKNGGAQRDATTLSGGETFLASLSLALALSAQIQ LKGTAPLELFFLDEGFGTLDDNLLEVVMDSLERLHHDRLSVGIISHVDSIKNRVPVKL MVTPAQAGLGGSKVAIEVS" gene complement(848904..849749) /locus_tag="Dhaf_0761" /db_xref="GeneID:7257728" CDS complement(848904..849749) /locus_tag="Dhaf_0761" /inference="similar to AA sequence:KEGG:BDI_2011" /note="KEGG: pdi:BDI_2011 formamidopyrimidine-DNA glycosylase" /codon_start=1 /transl_table=11 /product="formamidopyrimidine-DNA glycosylase" /protein_id="YP_002457261.1" /db_xref="GI:219666826" /db_xref="InterPro:IPR012319" /db_xref="GeneID:7257728" /translation="MLELPEVLTLVRQLNESVKNRRILKVWPPTKAHKFCWYSGEPEE YDKALAGSRIAGAEGFGTFAELIFDNDRKLCVNDGVNLRLMPAGKVPENYQLMMELDD GQALVFTVAMYGGIFAHDGSYDNLYYLASRNSISPFAQDFPAYYLRLFSESKPTLSAK AFLATEQRFPGIGNGTLQDILFEAGIHPKRKIGTLEQWERDKLLQAVIEVLNEMAKLG GRDTEKDLFGVSGGYKTKMSKNTAGTDCGQCGGTILKENYLGGSVYFCPECQPQDLAD QNLVR" gene complement(849754..850476) /locus_tag="Dhaf_0762" /db_xref="GeneID:7257729" CDS complement(849754..850476) /locus_tag="Dhaf_0762" /inference="similar to AA sequence:KEGG:CLC_0767" /note="KEGG: cbh:CLC_0767 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457262.1" /db_xref="GI:219666827" /db_xref="GeneID:7257729" /translation="MAVWNPWRGCHRYSEGCKFCYIHKGDMKRGMDTNLIVKSAKFNA PVAVNKQGHYIMKSGQLVYCCFSTDFLLEDADPWRDECWSMMKERPDLHFLFLTKRIE RFSQCLPGDWGEGYENVTVGCTVENQHTADERLEIFSKLPIKHKNIALQPMLEAIDIE KYLEGIELVVVGGEYDRNARPFDYEWALAVREQCIRHQVSFSFRQCGTNFIQNGKLRR LNYGMLFKCARESNIDYQAGRE" gene complement(850529..850969) /locus_tag="Dhaf_0763" /db_xref="GeneID:7257730" CDS complement(850529..850969) /locus_tag="Dhaf_0763" /inference="protein motif:PFAM:PF06445" /note="PFAM: transcription activator effector binding; KEGG: cac:CAC3493 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcription activator effector binding" /protein_id="YP_002457263.1" /db_xref="GI:219666828" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7257730" /translation="MNYEIVTLPEKIVVGVTARTSHTDPQCQQVIGGLWQKFMGEGIW VSIQNQANPYCLGLYSGYDETSYDVTVGAEVTKNGNPELTEKIIPAGSYALFRIKGDV VKDVAEAWDKIWTLPLERSFTGDFEEYLSNENGVAEIKIYIALK" gene complement(851045..851941) /locus_tag="Dhaf_0764" /db_xref="GeneID:7257731" CDS complement(851045..851941) /locus_tag="Dhaf_0764" /inference="protein motif:PFAM:PF08279" /note="PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cac:CAC3494 transcription regulator" /codon_start=1 /transl_table=11 /product="Helix-turn-helix type 11 domain protein" /protein_id="YP_002457264.1" /db_xref="GI:219666829" /db_xref="InterPro:IPR001034" /db_xref="InterPro:IPR013196" /db_xref="GeneID:7257731" /translation="MQINRLFEIIYILLENRTITAAELAERFEVSARTIYRDVEILAQ GGMPIYMSKGKGGGISLLPDFILNKAVLTEEEKSEILSSLQAFNAVNLSKSETALSKL TSMLGAKNTDWIEVDFSSWGHFENDRAYFENIKTAIIEKKIITFMYASGKAEKLLREV LPLKLVFKGAAWYLYGYCTLRRDYRFFKLRRITELAVTDTGFEMKTPETIFAGQKLDT GTYLKAKLLISKTMAFRVYDEISSYEIDEKGDFVCRLYLPDIATLCTYAASFGEHCII LSPEQAVAEMKRRLQNSLKNYS" gene complement(852023..852643) /locus_tag="Dhaf_0765" /db_xref="GeneID:7257732" CDS complement(852023..852643) /locus_tag="Dhaf_0765" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_1767 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457265.1" /db_xref="GI:219666830" /db_xref="GeneID:7257732" /translation="MKRVSCNIIRDILPLYIENVVSTDTKTLIEEHVSECEDCSDELK RMQAPIKLAADTDATNLKRIKKTWHLKKLWVAIITTAAVTILFMAGLYLYQLELPVKY SETQIWTEEVTMQGGLKSFQVTIRGRNIEMVEASSPAFNEKDNAAHHYRIFRTTFLRN LFDSGDRSVAVGVPEYWHEIDNFESDIVIEFADKTILYRNGEPVEI" gene complement(852630..853133) /locus_tag="Dhaf_0766" /db_xref="GeneID:7257733" CDS complement(852630..853133) /locus_tag="Dhaf_0766" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_0070 predicted sigma factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457266.1" /db_xref="GI:219666831" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257733" /translation="MKKIDLEALYRRYFKETFLFLKSLSSSEEVAEEITQETFFKVIK AIDTFDGSKDIRAWIFAIARNTYYTHYKKSKAIITEPFIEDVPDHGIEVSVQIMNEDT AFVIHQILHDMDEPYKEVFSLRVFGELPFEKIGLIFNKNASWARVTFYRAKNKLLKTL EGLDEES" gene complement(853325..853783) /locus_tag="Dhaf_0767" /db_xref="GeneID:7257734" CDS complement(853325..853783) /locus_tag="Dhaf_0767" /inference="similar to AA sequence:KEGG:OB2937" /note="KEGG: oih:OB2937 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457267.1" /db_xref="GI:219666832" /db_xref="GeneID:7257734" /translation="MSWTALYASFFATMAFGILFNVPRKSLFTGGLVGMLGWAVFVTL TVNLEINTITATLFAAFSVATVSQILARRYKMPVTVFSIAGIIPLVPGGMAYATIRQF IENNYTEGVRLGSITLLMAGSIAFGLIFSGVITETFSRKKGVPKPNLPGR" gene complement(853797..854558) /locus_tag="Dhaf_0768" /db_xref="GeneID:7257735" CDS complement(853797..854558) /locus_tag="Dhaf_0768" /inference="protein motif:PFAM:PF06738" /note="PFAM: protein of unknown function DUF1212; KEGG: gtn:GTNG_0811 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1212" /protein_id="YP_002457268.1" /db_xref="GI:219666833" /db_xref="InterPro:IPR010619" /db_xref="GeneID:7257735" /translation="MNSAIGEVMEVCLLAGKIMLQSGAEIYRIEDTMNRIARTCAVPE AHSYVTPTGLFLSLQGQERNQEQTKFLRIYERQIDLNKIVSVNEISRKLSEKELTLQQ AHEALLAIEKSGFLYPFWLQLIAAALASGFFSLTFGGTMIDFLPSVAAGGLGFLLYAQ ANRRIAVKFFSEIFAAFTIGFIAYFFYYLGIDIQIDKVIIGSVMPLVPGVLITNAVRD LMAGDLIAGLARGTEAFLTAFAIGTGIAVVLAVLM" gene 854839..855894 /locus_tag="Dhaf_0769" /db_xref="GeneID:7257736" CDS 854839..855894 /locus_tag="Dhaf_0769" /EC_number="1.2.1.38" /inference="protein motif:TFAM:TIGR01850" /note="KEGG: pth:PTH_0501 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region" /codon_start=1 /transl_table=11 /product="N-acetyl-gamma-glutamyl-phosphate reductase" /protein_id="YP_002457269.1" /db_xref="GI:219666834" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR000706" /db_xref="InterPro:IPR012280" /db_xref="GeneID:7257736" /translation="MKVGIIGATGYTGQELVRLLQNHPEIELAYLGSSSNSGAVYGEM FPQFSGLSASLDAESGLGTGKLDDEQVPDLDVLFCALPHGLTAGRTAQWLSRGIKVID LGADFRLKDGAVYEAWYKVQHPAQELLPEAVYGLPELYRDKIAGKTLVANPGCYPTAT LLALAPLLRKGLLQKDGLIIDAKSGVSGAGRGVALGNHFSEVNENFKAYGVASHRHTP EIEQQLSEAAGAELLVNFTPHLVPMIRGILATIYAQVTPGVTEADLKACWQEQYEEEE FVHILPEGIWPQTKFALGSNHSFLQLKIDPRTGRAILVSALDNLVKGASGQAIQNMNL ICGLPENMGLKMRGLWP" gene 855966..857192 /locus_tag="Dhaf_0770" /db_xref="GeneID:7257737" CDS 855966..857192 /locus_tag="Dhaf_0770" /EC_number="2.3.1.1" /inference="protein motif:TFAM:TIGR00120" /note="KEGG: sth:STH2890 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ" /codon_start=1 /transl_table=11 /product="arginine biosynthesis bifunctional protein ArgJ" /protein_id="YP_002457270.1" /db_xref="GI:219666835" /db_xref="InterPro:IPR002813" /db_xref="GeneID:7257737" /translation="MDKWSWIEGGIAAPRGFRATGVKAEIKYPDKYDVALVYSEVPAQ AAGVFTRNKVKAHPLILTKKHLENGIARAMVANSGNANACVGKPGDEAAWAMAVKTAE VLGIAPEDVLVASTGVIGVELPVESVTRGIEKASLEIAEKISPEEMTQNSHQAALAIM TTDTAVKEAACELSTENGVIRLGAMAKGSGMIHPNMGTMLGFITTDAAIPASELQELL REAVEDSFNMVTVDGDTSTNDMVLVLANGKSGITLNPEEWAEFRRMFWAVCQKLAQDI ARDGEGATKFLEVQVLGAAAVEDARKIAKSICGSSLVKIALYGEDANWGRILAAAGYS GAEFNPNQVEIYLGHVLVAKEGQGVHFSEEEAKKVLSRKDVLIKLLLQEGQAQATAWG CDLTHDYVTINGDYRT" gene 857294..858190 /locus_tag="Dhaf_0771" /db_xref="GeneID:7257738" CDS 857294..858190 /locus_tag="Dhaf_0771" /EC_number="2.7.2.8" /inference="protein motif:TFAM:TIGR00761" /note="KEGG: hmo:HM1_1430 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="YP_002457271.1" /db_xref="GI:219666836" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001057" /db_xref="InterPro:IPR004662" /db_xref="GeneID:7257738" /translation="MTPLDKGLDKARVLIEALPYIQKFAGKTVVIKYGGHAMLEQDLK EKVMLDILLLHSVGIRPVVVHGGGPEINSMLTRVGKESHFVRGLRVTDKETMEIASMV LVGKLNTEIISLLNRFGGRAVGLSGKDAQLLQAVKKPMQFQNSQGELEDVDLGFVGEI EQIRPEIVTSLVEQGYIPVISPVAGGEDGESYNINADTAAGEIAKALKADKFLLLTDV PGVLRDVEDKDSLLSVIKEDEISGLIDLGVISGGMIPKVECARAALQGGVGSVHILDG RIPHAILLELFTDGGIGTMFNA" gene 858225..859424 /locus_tag="Dhaf_0772" /db_xref="GeneID:7257739" CDS 858225..859424 /locus_tag="Dhaf_0772" /inference="protein motif:TFAM:TIGR00707" /note="TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mta:Moth_2287 acetylornithine aminotransferase" /codon_start=1 /transl_table=11 /product="acetylornithine and succinylornithine aminotransferase" /protein_id="YP_002457272.1" /db_xref="GI:219666837" /db_xref="InterPro:IPR004636" /db_xref="InterPro:IPR005814" /db_xref="GeneID:7257739" /translation="MCEKTHTMIQRGQEVVMNTYGRLPMAIVKGKGTTVWDIEGKQYL DFVTGLAVSSLGHSHPAVVEAIQKQAEEILHTSNLYWIPNQIALAEKLVEHSFADQVF FCNSGAEANEAAIKIARKYAKEHYSEDKYEILTLVNSFHGRTLATLTATGQTKYQKGY APLPEGFTYVPINDLAQLEEKMNPKVAAVMLEPIQGEGGVFPLEVEFLAKARKLCDDY GALLIFDEIQVGLGRTGKLFAYEWSNVVPDIMTLAKALGGGVPIGVMLAKEKVASTFK PGDHASTFGGNPLATAVGCAVMDVLTEEGFLEDVQKRAQYFKQELQKLADKYQTGTEI RGQGFILGWPLDRLGAEIVEGAREKGLLINFVGGKALRFLPPLNVSYQEIDEAITILD QIFAECW" gene complement(859543..861171) /locus_tag="Dhaf_0773" /db_xref="GeneID:7257740" CDS complement(859543..861171) /locus_tag="Dhaf_0773" /EC_number="1.3.99.1" /inference="protein motif:PRIAM:1.3.99.1" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05698 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457273.1" /db_xref="GI:219666838" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="GeneID:7257740" /translation="MTTSNSSKGISRKDFIKGAAFGIAGIATIGLSGCSTDAAKTNSP APTPAEGIAWDHETDVVVVGLGGSGGAAAWEAGNAGSEVIILELAKTAGGSTNICGGL VTIGGGNALQKAAGFEDSPENFYNYLTAALGTGTDEEQCRTFAEQSPDMFTWLTEKIG VKFNPGVNPLWPETPNPTAGLTCTGDEYHMDYAAVSKAVHRTGWVDSEARPGGRDGSG FFQPLLRAVEALPKVKIMYETAGEQLIYDHDQKRVLGIKAKQGDKLLSIKARKAVILT AGGFAKNEDMVRTYCPAFSGVLALGTAGDNGVGIKMGQALGAALQNMHMAFSTSTVYA YITQEGCAGGPLSQGIIVNQFGSRFVAEDHYHSWIAEYMLQNHKPGKHLPSYLIFDAK MHDTLPDKSKESLEKAKVIKANNIEELAKALGTSEGVLENTVQFYNFKATEGKDPLLN KRSQFIKPITTAPFYALEIIPTSMFTAGGLRINAKAQVLSAETGAPIAGLYSAGRNAA NVIAQQYGGSGTSVATCFVFGRIAGQNAAAETAV" sig_peptide complement(859543..859662) /locus_tag="Dhaf_0773" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.957) with cleavage site probability 0.542 at residue 40" gene 861423..861938 /locus_tag="Dhaf_0774" /db_xref="GeneID:7257741" CDS 861423..861938 /locus_tag="Dhaf_0774" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cbe:Cbei_3646 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002457274.1" /db_xref="GI:219666839" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7257741" /translation="MPKKSFAQDCLYTAIMRLMREKDVDDITVKELVLKAGVARSTFY RYYTQPMDVLRDYLRPFNHGNAHLDDKDDKKVYLRRFYQYYTGHSELIYTLVQANKTE FLRETISCHILEVFSPMMTNKGVSPFLQKASVGLCVETLILWIVNDRKEKIEEMTDTV HNMVAVVERVS" gene 862066..863934 /locus_tag="Dhaf_0775" /db_xref="GeneID:7257742" CDS 862066..863934 /locus_tag="Dhaf_0775" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: bwe:BcerKBAB4_5645 putative transcriptional regulator, RpiR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457275.1" /db_xref="GI:219666840" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7257742" /translation="MKELANADSMSLGRQELNQEWLEKAQYALNPSNLRSWTAGIRFS QVPDMIASHLKSALLNSYLNSIAQHLEEMDKKSLHKAHVIYCTDDCGNIRDLNLSPDV SERVDSHLRRLVVDRLDQGNVWEDAVRWYWNHSVIWTMEAMSQEFDMRTMSCMSERTW SKVYSKTLCYANPERFNSLFNIYAKNFAHLYMQSLQKEYPDSSRYNLVFYEEFLGLNA PAAGGQGILRPKMLKEKASYLTTFSMAMYHQLRKAVAAQEFTTHDDGSCLSASLETPS GSSSGRVILKREHNFCIEPSEKIMKEVNDETVDLMDSICHLWLKRFTPLQERITIHAD DILALRGLRKQKNGQGQRGGYKSEWRERISAHMDLLDRLWISPSPNGESSFGLEEKAF IISKSHDLQREGNKGDYIWEVRPGNPLVQDLQKGKRQTAILSKRVLEMDPYRHAYEKR AARYFSWLWRSRQSRGDYLEPIGITTLLDAIHLQYQKSRSAKTIERFEKMMDTLRDKE VIAGWQYDRIYRNGRDWLELKLVIEPPQAIIDQYAKIKSPTKPGRPPKSERTSLCSLG EQLKKERLRKKLTQMQAAEDIGIAQTTISKLESGRRVPDFKTARKIQQWLKITASS" gene 864181..864543 /locus_tag="Dhaf_0776" /db_xref="GeneID:7257743" CDS 864181..864543 /locus_tag="Dhaf_0776" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457276.1" /db_xref="GI:219666841" /db_xref="GeneID:7257743" /translation="MEKGILWAKRAFLLFALAVVVIVSTTTETNAFVSMSEDQVTCTP CHEDGRKGDGKGGEIHPDGSLDNEEAKGEDKKGDKQDILAKYQTTMMGNLVIAPAAPW DDLWTWVQAQPPVKAESK" sig_peptide 864181..864264 /locus_tag="Dhaf_0776" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.875) with cleavage site probability 0.194 at residue 28" gene 864592..866292 /locus_tag="Dhaf_0777" /db_xref="GeneID:7257744" CDS 864592..866292 /locus_tag="Dhaf_0777" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: nar:Saro_1580 fumarate reductase/succinate dehydrogenase flavoprotein-like" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002457277.1" /db_xref="GI:219666842" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257744" /translation="MSDSLNVSRRKFMIGGLATAVVAGAGLLTGCTTQSPAPQEPDAA GNWDAESDVVVIGFGCAGGGAAVSAAEAGASVLVLESLPIPGGTTRVSGGALWVPANP LQKKEGIKDSIEEGRQYMQKGNDGQVEEELINVYLENGPKVVEFLMNKLQVEFKFGYP DYHPEWPGGKRLGRSLSPAYNGKGSGEALMAALYDYTVAKGVKFSLNTHAKKLIKDDS GKVIGVIAYQDGKEMRVKANKGVVLATGGFEWDKTLLKTYQRGPVEASVVFNPGSGGG IYSCGDGLRMAMEAGADLRNMNESWGVMVYLLPGWEEEVANYRQNAKDYKKSTWKTIM GDWFLWRGKPGTIIVNKDGKRFMNEACDYDTSAYPFYERDTYGENRWRNLPAFVIADS VQWSKYGIAGAKGDNVPDYITKADTLAELAQKLGIDAKGLEATVAEFNKYASQKPPKD PLFHRGESYFDRFASGDYAMAQADPENPACTLAPLTKGPYYGIQIHSANCGTCGGARI NGKAQVIDVHGNVIPNLYAAGNVAGLGGPGITYHGPGNPIAGGVIFGYLAGTDAATKA" sig_peptide 864592..864684 /locus_tag="Dhaf_0777" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.956) with cleavage site probability 0.743 at residue 31" gene 866843..867223 /locus_tag="Dhaf_0778" /db_xref="GeneID:7257745" CDS 866843..867223 /locus_tag="Dhaf_0778" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457278.1" /db_xref="GI:219666843" /db_xref="GeneID:7257745" /translation="MEKGIKWAKRVFLLLALALVVTVSTTTETNAFVSMSEDQVTCTP CHEDGRKGDGKGGEIHPDGTSENEGTKGEGKTEENPILTQYQSTMTGNLTIAPAAAWD DLWSWVQAQPPAKIESKYDEAFQK" sig_peptide 866843..866926 /locus_tag="Dhaf_0778" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.323 at residue 28" gene 867254..868954 /locus_tag="Dhaf_0779" /db_xref="GeneID:7257746" CDS 867254..868954 /locus_tag="Dhaf_0779" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mav:MAV_0875 FAD binding domain, putative" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002457279.1" /db_xref="GI:219666844" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257746" /translation="MSDSLNVSRRKFMIGGLATAVAAGAGLLTGCSTQAAAPQTPSAS ENWDAEADVVVVGFGCAGGGAAVSAAEAGASVLVLESLPIPGGTTRVSGGALWVPANP MQKKEGIPDSIEEGRQYIMKGNDGQVDEELIDAYLENGPQIVEFLMSKLNIEFKFGYP DYHPEWPGGKRLGRSISPSYNGKGSGEALMAALYDYALAKGVKFALNTHAKRLIKDDS GKITGVIAYQDSKEIRVKANKGVVLATGGFEWDKSLLKTYQRGPVDASVVFNPGSGGG IYGCGDGLRMAMEAGADLRNMNESWGLMVYLLPGWEDEVANYRQNAKDYKKSTWKTII GDWFLWRGKPGTIVVNKEGKRFMNEACDYDTSAYPFYERDTFGENRWRNLPAFVIADS VQWGKYGIAGAKGDNVPDYITKADTLAELAQKLGIDAQGLEATVAEFNKYASQTPPID PHFHRGESYFDRLVSGDYAMAQADPENPACTLAPLAKGPYYGIQIHSGNCGTCGGARI NAKAQVIDVHGNVIPGLYAAGNAAGLGGPGITYHGPGNPVAGGVIFGYLAGLDAAQKA" sig_peptide 867254..867361 /locus_tag="Dhaf_0779" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.517 at residue 36" gene complement(869032..869151) /locus_tag="Dhaf_0780" /db_xref="GeneID:7257747" CDS complement(869032..869151) /locus_tag="Dhaf_0780" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457280.1" /db_xref="GI:219666845" /db_xref="GeneID:7257747" /translation="MNFADKFNEDKKKAEENQKHQGKGNPGHKLPNKQHSTNK" gene 869286..869522 /locus_tag="Dhaf_0781" /db_xref="GeneID:7257748" CDS 869286..869522 /locus_tag="Dhaf_0781" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457281.1" /db_xref="GI:219666846" /db_xref="GeneID:7257748" /translation="METSKTGISRRKFITLGIAAVGGLALASHVGYNNDNDNTEKMKK PTQIPTPAKWKNEELTVAWLGHAGFLITQLSHPS" sig_peptide 869286..869369 /locus_tag="Dhaf_0781" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.392 at residue 28" repeat_region complement(869500..871008) /note="ISDha5" gene complement(869501..870853) /locus_tag="Dhaf_0782" /db_xref="GeneID:7257749" CDS complement(869501..870853) /locus_tag="Dhaf_0782" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: pth:PTH_2669 hypothetical protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002457282.1" /db_xref="GI:219666847" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257749" /translation="MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVV FQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVGRF EKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSF APLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSPKPDTVVQMLERALKAGFS ADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPK AEILGSVRVHTPSGLALKVVFVQNRNNRREWLAILTTDLSLETTEVVRIYGMRWSIET FFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFA DEVMDLDLKTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES" gene 871069..871746 /locus_tag="Dhaf_0783" /db_xref="GeneID:7257750" CDS 871069..871746 /locus_tag="Dhaf_0783" /inference="similar to AA sequence:KEGG:Acid_7368" /note="KEGG: sus:Acid_7368 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457283.1" /db_xref="GI:219666848" /db_xref="GeneID:7257750" /translation="MTPLGNYTIGMKRYVACPLTAEQIGKVDLVICSHAHTDHFDYPS LRSMQSPDTAVVTAKGTRSLWEGLNYKTIDEMHWGDEKEYPGGLKVKAIEGEHWGARL PWNKEMEANSILLSKNGVNLFIGADTGYTEKFQQQLREMEIELAIMGIAAYSPKSFEA RHATPEQAIQMAEEMGAKKILPMHWGTFKLSQEPMEEPIQRFNQAMAGKMEKIALQEI GATWVQS" gene complement(871898..872533) /locus_tag="Dhaf_0784" /db_xref="GeneID:7257751" CDS complement(871898..872533) /locus_tag="Dhaf_0784" /inference="similar to AA sequence:KEGG:BH0832" /note="KEGG: bha:BH0832 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457284.1" /db_xref="GI:219666849" /db_xref="GeneID:7257751" /translation="MLTLMEEVLLISLNEEKGNFSFTASTFIDYCLTGAILMELEHLQ RIRVSNKTVEVLDARPLNNQRLELALHQMDSSKRHRPPEHWVAKLRSTLKGLRKSLLE EMADKALLREEDQQGFLFFTSTRYPVRDERARKDILDRIHRVLLRGENPDRKTAKLIG LLYASGILPYLVDKGERKEAKKRAKDITKDDILANAVKKAVQSTSTNPAFY" gene complement(872490..872723) /locus_tag="Dhaf_0785" /db_xref="GeneID:7257752" CDS complement(872490..872723) /locus_tag="Dhaf_0785" /inference="protein motif:COG:COG4877" /note="KEGG: chy:CHY_0093 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457285.1" /db_xref="GI:219666850" /db_xref="GeneID:7257752" /translation="MSMSKKQFALRLDPKLYTALEKWAADEFRSVNSHIEFLLREATR KSGRLNKGGETPGEGGDYIDVNPHGRSSSHFSE" gene complement(872749..873591) /locus_tag="Dhaf_0786" /db_xref="GeneID:7257753" CDS complement(872749..873591) /locus_tag="Dhaf_0786" /inference="protein motif:PFAM:PF01145" /note="PFAM: band 7 protein; KEGG: chy:CHY_0094 SPFH domain-containing protein/band 7 family protein" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="YP_002457286.1" /db_xref="GI:219666851" /db_xref="InterPro:IPR001107" /db_xref="GeneID:7257753" /translation="MKEKKAWVLNGYLAVVVVLASLIGGTALLIQTQFTLGIALILIG VILSSGIVVIQPNKSHVITFFGSYIGTIREPGLWLTIPLSTRKSVSLRVRNFNSKTLK VNDVEGNPIEIAAVIVFRVVDTAKAIFDVDRYEQFVEIQSETALRHVTSRYPYDNFEK DGYSLRGHSEEVARELSLELQERLKVAGVEVMEARLTHLAYSTEIAGAMLQRQQANAI LDARQIIVEGAMGMVQMAVERLETNNVVQLDEERKAAMINNLLVAIVSDRSAQPVINT GTLY" gene 873962..875764 /locus_tag="Dhaf_0787" /db_xref="GeneID:7257754" CDS 873962..875764 /locus_tag="Dhaf_0787" /inference="protein motif:PFAM:PF04294" /note="PFAM: putative cell wall binding repeat 2-containing protein; VanW family protein; Ig domain protein; KEGG: cbo:CBO2228 cell wall-associated protein" /codon_start=1 /transl_table=11 /product="VanW family protein" /protein_id="YP_002457287.1" /db_xref="GI:219666852" /db_xref="InterPro:IPR007253" /db_xref="InterPro:IPR007391" /db_xref="InterPro:IPR011081" /db_xref="GeneID:7257754" /translation="MKKSKKIAAVVILSYCISMNTPAIASPDPQAGDFPELTANLQIN QYRLYGETRYETAKIISEYYREQIILANSPENSSDDPPESSPEKVKNVVIATGNGYAD ALSASVLAYEMKAPIILVDTKVETSQDAFDYVAQNLDPQETIYIIGGEGTIASEFERE FIDLGFSKVVRIAGEDRYDTSYQIAAALKETTYSTVVISSGEQYADALSISSFAANQG WPVLLSPPVGLSPELREFLLKERPEKIYITGGTGAISDHIISEIHQLLPQVQVERLTG LSRFDTNMVIAKTFAPNPSALYLTTGYNFADALSGSVVAAQKGAPIVFIDPSTPTLPK AAAQYLETLSLHEIKPDLVTFGGEGAVPDEILKSAASLLSGSVRALDIHAIPEIEATV AQGKEYFLPATVPAHLYNSDIVSLPVRWDEPIINTQTMGVKVLEGRVEGYEKPVKLNL KVSEPLPLAEFSTRFNVNEVNRTENIRLAAEAIDGARLAPGEIFSFNETVGERTMAAG YKEAVVIEGNRFIPGIGGGICQVSSTLFNAANQAHLEIVERHHHSLPVGYVPPGQDAT VFYAVLDFRFKNTTKEPLVLRTWVEGGTLTIKIY" sig_peptide 873962..874039 /locus_tag="Dhaf_0787" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 26" gene complement(875860..876204) /locus_tag="Dhaf_0788" /db_xref="GeneID:7257755" CDS complement(875860..876204) /locus_tag="Dhaf_0788" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_1305 cupin 2, barrel" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002457288.1" /db_xref="GI:219666853" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7257755" /translation="MIRKTIDETVHNARGGEGSVVFSHILTKEELMGHANVYAKVTVK PHSSIGYHQHVGNTEPYYILSGKGIFTDSDGTRSEVGPGDVCVIKVGESHGLQNNTDE DLVMMALIINEG" gene complement(876373..877638) /locus_tag="Dhaf_0789" /db_xref="GeneID:7257756" CDS complement(876373..877638) /locus_tag="Dhaf_0789" /inference="similar to AA sequence:KEGG:Nther_1023" /note="KEGG: nth:Nther_1023 putative transcriptional regulator, PucR family" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, PucR family" /protein_id="YP_002457289.1" /db_xref="GI:219666854" /db_xref="GeneID:7257756" /translation="MKTSSLHEQTSLSTRLLKTLCSDSSLQSLVAIGYELLQNPFSIM DLRANVLAITGESPVEDDPVWNETVHTEGNSLQTFSYYVDNKLIEKIAESDYPFFWSD AYSKYPRIIGKIMIDGKHIAHIIICAHQRDFKEGDLDVASLLCQAVSIELQKNKYVIY SRELSHEAFLYDLLEGTPKNLKHMDEQLKQLSSTLKGILCVITIDISNWDRTTSTLPY LKDELELHLSQAKGVIHNRKIVLIASFENAKHFFATELEGLRQFILAYNLEAGISRPF YNLKELRYFYLESIEALKIGKLIHTDRSIFQYEDYVIFHLIINFTRDNEDLYSLYKLI HPGIIKLLDYDKQNKSEYAYSLYTYIFNFKNTTSSAASLNIHRNSFFNRMEKIEKLTN MDLNHSDTLHYLYFSFKILELLNISMPRI" gene 877849..879015 /locus_tag="Dhaf_0790" /db_xref="GeneID:7257757" CDS 877849..879015 /locus_tag="Dhaf_0790" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_0592 predicted transporter protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457290.1" /db_xref="GI:219666855" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257757" /translation="MSKGKLKFGVLAVSAMGMGAMVTNPVLADIMKAFPDIDPTTVML ISGLPSLFIVFFAPIYGKLTQYFPKKALLAFASLCFVLGGFLPAFMTHFTLILAMRCL LGVGLGFLMPMAADLISDFFDGHERQTMMGFQSAFTSIGGIMYQMAGGFLGSFGWNYA FYAYLLGVIIFLAVHFTLPEPQRKTAPQGEKLKMPGKVYPSFIALFAFQMILFILTNN AAVMLDGEKIADASSIGVALTLMTVGGLIGGFFAGKVMRVLKDYTFTLLFLLFGVGFG IGYTSYTLAQFFVATTLIGLAMGVLVPSYWVKLSVTVPPPLVALAISIGVSAMNIGGF VQPYVYDGVRKLFGLQIGRDSFLVAMIASLLMAAFVLAEAIVAKKGSSRDVSAR" sig_peptide 877849..877935 /locus_tag="Dhaf_0790" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.988 at residue 29" gene 879230..879673 /locus_tag="Dhaf_0791" /pseudo /db_xref="GeneID:7257758" gene complement(879670..880560) /locus_tag="Dhaf_0792" /db_xref="GeneID:7257759" CDS complement(879670..880560) /locus_tag="Dhaf_0792" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; UAA transporter; KEGG: mac:MA3243 integral membrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002457291.1" /db_xref="GI:219666856" /db_xref="InterPro:IPR000620" /db_xref="InterPro:IPR004853" /db_xref="InterPro:IPR013657" /db_xref="GeneID:7257759" /translation="MSDRNQGYLLIILSAVFYSTLGILGKYIYNTGIEMSLVIVLRLF ATVILLGLFLLITHKEPLLTFSRAVLFQGIFFIATAITFFLAVKYLSAGLATVILFAH PALVAVLAVIFYHEEIGAAQIVGLILALLGLFFISGLCIESSTALSPLGLILSVLSAV AYGIYALLGQRVVKTDGIWTITFTISLMGLVISALIFPHNLPALLSITPYQLFLGFAM AFLGTILPVVLFLKGVQKIGSSVGTLISIIEIPFALILAYLLLGEVLTPMQVVGTLLI LIATTMAVAVKNQKENNERN" gene complement(880779..881990) /locus_tag="Dhaf_0793" /db_xref="GeneID:7257760" CDS complement(880779..881990) /locus_tag="Dhaf_0793" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hypothetical protein; K03006 DNA-directed RNA polymerase II subunit A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457292.1" /db_xref="GI:219666857" /db_xref="GeneID:7257760" /translation="MTWTDRMKKTIETFKRMALPLFGFFILLALVEFIITVISLSATF LPFFDMNGLNPSFSPAPYMNPNIPVPPGYEYGPSLDYAFGWEELAPFMSMLPGLLGGI AILMVLSILIGSVFFTGIFHLTKKAYTEKAQFRDIKLKGLPRVLGWYAIVTLISSVAI GVGIFLAMRFESPYSLAMFGLIYILVLMAVGLFVAPWITAAPYYMLNHNSFAFGQAFK ESWHFYRRHMGPLWGAFFTLLGIQLLVNAIYRGSPDIGFILTLLTTPFLTVLPIVWVL TLEEEDQPPLIATIYSPSPGQASHDPGMGAPAEPSSPSPTDSPHTPWNTSSESVAKDS YGSASTTPLYTPPENPYSAPESPYHSPSVPSYEGTSSEESERESVNFCPTCGKKVREG ASYCSQCGTKL" sig_peptide complement(880779..880904) /locus_tag="Dhaf_0793" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.752) with cleavage site probability 0.645 at residue 42" gene 882237..883178 /locus_tag="Dhaf_0794" /db_xref="GeneID:7257761" CDS 882237..883178 /locus_tag="Dhaf_0794" /inference="protein motif:TFAM:TIGR00658" /note="TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: hmo:HM1_1435 ornithine carbamoyltransferase" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase" /protein_id="YP_002457293.1" /db_xref="GI:219666858" /db_xref="InterPro:IPR002082" /db_xref="InterPro:IPR002292" /db_xref="InterPro:IPR006130" /db_xref="InterPro:IPR006131" /db_xref="InterPro:IPR006132" /db_xref="GeneID:7257761" /translation="MPVLHKEHFTGRDFICLQDFTPDEILYMLKVAKELKEEKKGGTP HPILQGKSLAMIFTKSSTRTRVAFEAGMLQLGGHALFLSNRDIQIGRGEPIKDTARVL SRMVDGIMIRTHSHQDVIELAKYADIPVINGLSDFLHPTQVLADLLTIQEHKHCLEGL KLTYIGDGNNMAHSLMFAGKMGMHVVIATPAGYKPDAQVVAQAQAQAKQYGGLVEWVE DPLAAAEGADVLYTDVWASMGQEEEAAIRMKAFQSYRIDRETMERAQANAIVMHCLPA HRGEEITEEVLEGPQSVVFDEAENRLHAHKAIMALLI" gene 883316..884521 /locus_tag="Dhaf_0795" /db_xref="GeneID:7257762" CDS 883316..884521 /locus_tag="Dhaf_0795" /EC_number="6.3.4.5" /inference="protein motif:PRIAM:6.3.4.5" /note="catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming" /codon_start=1 /transl_table=11 /product="argininosuccinate synthase" /protein_id="YP_002457294.1" /db_xref="GI:219666859" /db_xref="InterPro:IPR001518" /db_xref="GeneID:7257762" /translation="MKKVVLAYSGGLDTSIIIPWLKENYGYEVIAMAADLGQGEELEP LHEKAIKSGASKLYIEDLQEEFVTDFIYPTLKAGAVYEGKYLLGTSFARPLIAQRLVE IAAKEGAVAIAHGATGKGNDQVRFELAVKALNPDLEIIAPWRIWDIKSREDAIDYAVE RGIPVPVTKDRPYSMDRNVWHLSHEGGDLEDPWNEPKKDLYLLGVSPEDAPDEAEYLE LDFEQGIPVSLNGEKLGPVQLLETLNEVGGKHGIGIVDMVENRLVGMKSRGVYETPGG TILYTAHQALEHLTLDRLTLHYKEQIALKYAELVYDGVWHSPLREALDAFVDVTQKNV TGTVRLKLYKGNCSLAGVKSPYSLYSEEFATFGRDGVYNQKDAEGFINLFGLPLKVRA LMEKKSGLR" gene 884628..886013 /locus_tag="Dhaf_0796" /db_xref="GeneID:7257763" CDS 884628..886013 /locus_tag="Dhaf_0796" /inference="protein motif:TFAM:TIGR00838" /note="TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: hmo:HM1_1460 argininosuccinate lyase" /codon_start=1 /transl_table=11 /product="argininosuccinate lyase" /protein_id="YP_002457295.1" /db_xref="GI:219666860" /db_xref="InterPro:IPR000362" /db_xref="InterPro:IPR003031" /db_xref="InterPro:IPR009049" /db_xref="GeneID:7257763" /translation="MKLWGGRFEKSTDALVEDFHSSISFDQRLYKQDIQGSIAHARML GEIGVLTSAEAQQIIEGLKGILTDIREGKIQFEIGAEDIHMNVEKLLTERVGTVGKKV HTGRSRNDQVALDLRLFLREEIDHTQELLIALLRTVLDLAKEHQETYMPGYTHLQKAQ PISFAHHMMAYAQMFLRDLGRLKDTRQRLNVSPLGSGALAGTTFPLEREMVAQELGFD GITWNSLDGVSDRDFALEFLSAASILMMHLSRLCEELVLWSTGEFQFVIMDDGYSTGS SIMPQKKNPDVAELVRGKTGRVYGDLVALLTVMKGLPLAYNKDMQEDKEQVFDAVDTI QKSLLVVEPMLRTMKVNKKAMAEGAKGGFTNATDLADYLAKKNVPFREAHEIVGKLVL YCSKRGCGLEDLTLKEFQEHSDVFAEDLFESIGIEYCVRQRHIPGGPSPESVAQAILW TEHILEQFTGG" gene 886287..887744 /locus_tag="Dhaf_0797" /db_xref="GeneID:7257764" CDS 886287..887744 /locus_tag="Dhaf_0797" /inference="protein motif:TFAM:TIGR01513" /note="TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: aoe:Clos_2666 putative nicotinate phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="YP_002457296.1" /db_xref="GI:219666861" /db_xref="InterPro:IPR006405" /db_xref="InterPro:IPR015977" /db_xref="GeneID:7257764" /translation="MQDVALLTDLYQLTMMQGYYQNGYENKEAVFDLYFRKIPSGGGY VIAAGLEQVVEYIENLRFSSEDMAYLRGLNIFDEGFLNLLKDFRFHGDIDAVPEGTVV FPYEPLVRVKGRILEAQLIETALLNIINFETLIATKASRVVAAAGGGSVMEFGLRRAQ GPDAGILGSRAAFIGGCQFTSNVLAGKRYGIPLSGTQAHSWIQCFPDELEAFRAYART FPDQCLLLVDTYNVLKSGVPNAIKVGLELEAEGHRFLGIRIDSGDLTYLSREARKMLD QAGLEHARIVASNDLDEHTISAIRAQGAAIDSWGVGTHLITSKDTPALGGVYKLSAEG QKGVFEPRLKVSENISKITNPGIKKIVRFYDRRGKAMADLIALEDEHFEEPLTIFDPI ETWKRKTLTDFKTRELLRPVFRGGRRVYELPYLKDIQTYAQHECETLWDEVKRLVNPH RYIVDLSPKLFELRQSLLLEISTKIEEEQTKRLSK" gene 887807..888574 /locus_tag="Dhaf_0798" /db_xref="GeneID:7257765" CDS 887807..888574 /locus_tag="Dhaf_0798" /inference="protein motif:TFAM:TIGR00552" /note="TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: cdf:CD0794 NH3-dependent NAD(+) synthetase" /codon_start=1 /transl_table=11 /product="NAD+ synthetase" /protein_id="YP_002457297.1" /db_xref="GI:219666862" /db_xref="InterPro:IPR003694" /db_xref="GeneID:7257765" /translation="MWSAEELEIRINRAVEWLRERVQEARAQGLVIGVSGGVDSAVVA GLCKRAFPHNSIGVILPAGSNPMDREDAWLATEALSLKAVEIDLTQAHQGILASVKKA LTAQEYTFEEQLSQGNLKARLRMSTLYTVANSLNYLVVGTDNAPEAYTGYFTKYGDGG VDILPIASLTKAEVRAWAAQLGLPEKIVNRVPTAGLWEGQTDEQEMGITYDLIDRYLL GEGVPEERQEKIEKMHQQSEHKRQLPPALELPKLPKL" gene 888686..889366 /locus_tag="Dhaf_0799" /db_xref="GeneID:7257766" CDS 888686..889366 /locus_tag="Dhaf_0799" /EC_number="6.3.2.6" /inference="protein motif:PRIAM:6.3.2.6" /note="PFAM: SAICAR synthetase; KEGG: aoe:Clos_2697 phosphoribosylaminoimidazolesuccinocarboxamide synthase" /codon_start=1 /transl_table=11 /product="Phosphoribosylaminoimidazolesuccinocarboxamide synthase" /protein_id="YP_002457298.1" /db_xref="GI:219666863" /db_xref="InterPro:IPR001636" /db_xref="GeneID:7257766" /translation="MELVYTGKTKDVYALEDGNCLLKFKDDVTGENGVFDPGANTVGL QIEGAGKAGLRLTKYFFEKINALGIPTHYIDADLEAGTMKVKKATPFGQGLEVICRYR AVGSFLRRYGKYAQDGQPLDAFVEVTLKDDDRNDPPITEDALDMLGILSQDEYKVLKE LTQKIAGIVKEELAQKGMELYDIKFEFGRIGDDKQIALIDEISGGNMRAYKDGRRVEP LELEELMR" gene 889394..889969 /locus_tag="Dhaf_0800" /db_xref="GeneID:7257767" CDS 889394..889969 /locus_tag="Dhaf_0800" /inference="similar to AA sequence:KEGG:PTH_2595" /note="KEGG: pth:PTH_2595 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457299.1" /db_xref="GI:219666864" /db_xref="GeneID:7257767" /translation="MRIGVDIDGVVSDSYKAWLGKLNRHFGTNILELKNYDMHLDFGV SWEEMGKYFEDNVATLFDIPDPVAGAKEGIERLLRQGHEVVYVTARSLDEEVHTLRWL KKHKIPHEQILFTGFQSKVDYVLQWQLEIFLEDFLGNAQAISEAGVPVLLLDASYNQG ELSSGIIRCQDWQEIVREIGRRAPYSRSVTM" gene complement(890017..890358) /locus_tag="Dhaf_0801" /db_xref="GeneID:7257768" CDS complement(890017..890358) /locus_tag="Dhaf_0801" /inference="similar to AA sequence:KEGG:VIBHAR_05694" /note="KEGG: vha:VIBHAR_05694 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457300.1" /db_xref="GI:219666865" /db_xref="GeneID:7257768" /translation="MAQATRAEREKKTVKVMIMLYCKDNHKPIGDLCAECQELLTYSQ KRAEHCRFGEDKPVCGDCTVHCYKKDMRERIRTVMRYAGPRMILHHPLMTIQHVIDKR HKPQIGEDRIG" gene complement(890575..891882) /locus_tag="Dhaf_0802" /db_xref="GeneID:7257769" CDS complement(890575..891882) /locus_tag="Dhaf_0802" /inference="protein motif:TFAM:TIGR01082" /note="TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tte:TTE2575 UDP-N-acetylmuramate--L-alanine ligase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate/alanine ligase" /protein_id="YP_002457301.1" /db_xref="GI:219666866" /db_xref="InterPro:IPR000713" /db_xref="InterPro:IPR004101" /db_xref="InterPro:IPR005758" /db_xref="InterPro:IPR013221" /db_xref="GeneID:7257769" /translation="MSALAQVTAHIEGAHITGSDVPERFFTDAVLERAHIPVLNFSAA NVEKADIVVASAAYGENHEEIARARELNIPVYSYPQFLGRLMSKKRGIAVAGTHGKTT TTAMIGLALLQSGIDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEYRRHFLNYSPEYL IITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQSPIITFG LNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALCLEIGV PTEKVLESLSHFNGTKRRFEHIGQNAGALIVDDYAHHPTEIRSTLEGARLSFPDRRIR AVFQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNLNTISASSLADLISQQG VNARYIHSLEEIQTYLAQTLSPGDLVLTLGAGDIYKVGQSLVC" gene 892217..892594 /locus_tag="Dhaf_0803" /db_xref="GeneID:7257770" CDS 892217..892594 /locus_tag="Dhaf_0803" /inference="protein motif:COG:COG0365" /note="KEGG: hmo:HM1_0951 acetyl-CoA synthetase" /codon_start=1 /transl_table=11 /product="Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like protein" /protein_id="YP_002457302.1" /db_xref="GI:219666867" /db_xref="GeneID:7257770" /translation="MGGAEIALAKERDMWDGVFMDGFRSGTSTISYYQLESVLMDFPR VLEAGVVAKSDDLTQCQILSVYLALEDGLGSDADYERFTQEVVHYVREHFSLRCTIDV KIKEKLPMTRSGKILRTVLQGWN" gene complement(892686..893402) /locus_tag="Dhaf_0804" /db_xref="GeneID:7257771" CDS complement(892686..893402) /locus_tag="Dhaf_0804" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: chy:CHY_1544 [Ni/Fe] hydrogenase, b-type cytochrome subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457303.1" /db_xref="GI:219666868" /db_xref="GeneID:7257771" /translation="MKYNKKNQGSQPQLKIRKPVVKELNKDQLINHIEMRQPASVRFF HWGFAFSLIAIILTGLILHQPLPFLALPYSKVFVMHVGFGWLASAFFIFRLVDMLMHK DKTLLLSWQDIKNLPKVFAYYFYLRSDLPPYGQYNSGQKVIFTSWFLLFPFLVFISLA SYWAGERLDWVIKLLGGIQVLRIIKYFGAIYFASTILLHIYLGLTENLSKLQSMVTGY EQKNCEKSPAYQRPDYHTKR" gene complement(893495..894892) /locus_tag="Dhaf_0805" /db_xref="GeneID:7257772" CDS complement(893495..894892) /locus_tag="Dhaf_0805" /inference="protein motif:PFAM:PF00374" /note="PFAM: nickel-dependent hydrogenase large subunit; KEGG: chy:CHY_1545 [Ni/Fe] hydrogenase, large subunit" /codon_start=1 /transl_table=11 /product="nickel-dependent hydrogenase large subunit" /protein_id="YP_002457304.1" /db_xref="GI:219666869" /db_xref="InterPro:IPR001501" /db_xref="GeneID:7257772" /translation="MLEKKVIFPFTRIHNPMLVEAYLENGVIQEAFISDTLYRGFEQI LEGRPAFDMPYYTQRICGICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQ NHIRHFYLMSMPDYFKGPDIPPFTPHLEGDIRFNTEENQRMTEHYFQAVEISRDAHAA FGVFGGKAPHGHGIVPGGCTMHVDADKINRYRGYLIKILEFINNVMIPDIELLVKRYP EYVHLGKGNGSFLSVGGFTQPDGGTLFPHGIVLEDKHQPFDDRLILEEVTTSWYKPTP PAHPWQGITEPDKSQPQGYTWVKAPRYQGHALEVGPLARAVIAKEKIIGYGTLGRHWS RVMETKKIAEAAMIWLERLVPGAETLNTKVQQESGMGIGYVEAMRGTLGHWVKIEKGR VKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTIKHPELKEAGRVIRSFDPCFSCSV HLIDGEQLRTLDIRV" gene complement(894895..896022) /locus_tag="Dhaf_0806" /db_xref="GeneID:7257773" CDS complement(894895..896022) /locus_tag="Dhaf_0806" /EC_number="1.12.99.6" /inference="protein motif:TFAM:TIGR00391" /note="KEGG: dau:Daud_1939 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit" /codon_start=1 /transl_table=11 /product="hydrogenase (NiFe) small subunit HydA" /protein_id="YP_002457305.1" /db_xref="GI:219666870" /db_xref="InterPro:IPR001821" /db_xref="InterPro:IPR006137" /db_xref="GeneID:7257773" /translation="MLNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIM VETGTCTGDSISLDNIWSPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAH EFVLLVQGSMIRRDGGHYNYAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPV AGYPNPTQSTGVQNILPERRVINVSGCPAHPDWIMGTLLHLALYGEPELEKFGRPKMF FGETIHNNCPRRRYYDQGIFATDIGQKECLYRVGCKGPVTYADCPIRRWNDHYNWPIG CNSPCIGCTEPGYPDLMEPFTAHFPDIPFPGGSRAATDRIGRGVLGLATLGIGGYFLS SFYKGRLHRNFIRSTIKEKKKKIKVKKVKFCHQYRPKKPKE" gene complement(896168..897589) /locus_tag="Dhaf_0807" /db_xref="GeneID:7257774" CDS complement(896168..897589) /locus_tag="Dhaf_0807" /inference="similar to AA sequence:KEGG:Dred_3228" /note="KEGG: drm:Dred_3228 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457306.1" /db_xref="GI:219666871" /db_xref="GeneID:7257774" /translation="MGHPSVHPTGVTIYNPEKCFNGYTIFPANEHGATLIDMNGGVVS FWKDFQGFPNKLLKGGYIMGSLGERNVLCGYQDQIDLVQIDWDGNIVWKFDKHEFIED PDEEPQWMARQHHDYQREGNPVGYYVPGMECKVDSGNTLILTHRNCYNKKMTDKRLHD DTIIEVDWEGNIVWEWKCHEHFDEYGFTNGAKNALYRDPNMTPAGADWMHINSISVLG PNRWYDAGDERFHPDNIIFDGRETNILAIISKETGKIVWKLGPNYDENEATKKIGVII GQHHVHMIPQGLPGEGNILIFDNGGWAGYDNPNQFSSTGNKAVRRDFSRVLEIDPTTM EIVWQFSPAEMGHGMPFHASHFYSPFISSAQRLPNGNTLITEGSDGRLLEVTSEHELV WEYISPYWGKQMPINMIYRAYRYPYDYVPQLEKPEEVAIERMDNTTFKLPGAKGNEPQ RVIEVAGTKGYGESVGFCVQKDE" gene complement(897709..899199) /locus_tag="Dhaf_0808" /db_xref="GeneID:7257775" CDS complement(897709..899199) /locus_tag="Dhaf_0808" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter)" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002457307.1" /db_xref="GI:219666872" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7257775" /translation="MAVKQTEDSLTPHPLVTPQPGMDKELIKVLFFFVIAGLGWILPA PAPITPIGMKVFFVFIATVYGWTISEKVWPSLFACLAFPLTGVATMKEFVAMGWGSDV FYFMVLAFVLVKFLEEAGVSQFLASWLMSRKALQGHPWRLIFMILFTAYLVCSLVNIF IGMLLVWQIVYTMTDTIRQKPYDKFPTLMVFGIAVMGGLSLCAMPWGGNAIVNLGVYA NLMGEPGNMIRYMAFSLPVGIISIFAYLLLCKYVFKLDITSLKKLTSDLINPEDLKVT PIKKIALVSLGAFIVLLLLPSILPKGNAFANLLNHMGVVGVIVLVFGVLSLIKSNGQN IFNFAALATKGVPWNMVAMVLVILAIGGCLMNPKTGVNEFLQLNVAPILTSLSPLMFV VVITLITVVLTNFMINMVVVALFLPVVISMSGTLGINPEQVSYLVMVASSFAILTPAA SAASAILFPNAKWIRPKDIYQYGFPTIIVITAIAIIWSYLSGLFLY" gene complement(899377..900342) /locus_tag="Dhaf_0809" /db_xref="GeneID:7257776" CDS complement(899377..900342) /locus_tag="Dhaf_0809" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457308.1" /db_xref="GI:219666873" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257776" /translation="MRLEQFKQILKIEEHQSFSKAAKALFISQPSFSISINNFEEELG FKLFERNNKRVVPTEQGKEILSLAKKILDVEEKIKGIMDGNDVLIRNLHIAVPAALAN AVFSQILIDFRELYPSVNLHIQEARFYEIIDMMEKGVYSLGVISSPKSQEQELLRKLT GKGIACEIIPGADNLNMTLFISSRNPLACQESVCLTDFKNLISISYKDNFTIALKEMD DIHKHVFASSNQLSPSNKEIIVQDIELVKMLISENLGYAVFPKIFAMNNLYVKKGLIQ ALPIREFHEPHSFCILYFSKEPLSLIEKELLIHVRQSLKNIIINQ" gene complement(900368..901291) /locus_tag="Dhaf_0810" /db_xref="GeneID:7257777" CDS complement(900368..901291) /locus_tag="Dhaf_0810" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457309.1" /db_xref="GI:219666874" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257777" /translation="MRLEQLQHIIEVYNKKSISEAARTFLISQPQLSHSIKQLEIELG YKIFRRSNTNTIFTSQGKEVLALAQELINYVEEVKTYARGTSVLYGNISLALGPAVFN AFASPLITYVHQHYPNVNLAITEDCAKDVIRKVEEGDSMLGITGWPKVQEHTQLKLLD SKNIAYERVLDTTFNVIVGNKHPLAQKKRVSLSDLQEVTFVDYYGMNEAFLRMSGIAP KNNQSLFVYDREMLKFILSNNRGVAIFPSVFALNDIYFKQGLLQLRPIDDIPDNINAF MYLIYFKNEPLSSLLEQFIKVIKEIIQKTSQ" gene 901777..903135 /locus_tag="Dhaf_0811" /db_xref="GeneID:7257778" CDS 901777..903135 /locus_tag="Dhaf_0811" /EC_number="2.8.1.7" /inference="protein motif:PRIAM:2.8.1.7" /note="PFAM: aminotransferase class V; KEGG: amt:Amet_1345 cysteine desulfurase" /codon_start=1 /transl_table=11 /product="Cysteine desulfurase" /protein_id="YP_002457310.1" /db_xref="GI:219666875" /db_xref="InterPro:IPR000192" /db_xref="GeneID:7257778" /translation="MNFRFFPWTQPTNYGHLFLGLDTQVPLAAGGSVPGINFDNGATT PPFLSVLEEINRFAPLYGSVHRGAGYKSVVSSQIYEQARTEVLRFVGGDPRSDTVIFV KNTTEALNKLANRFQNKNKKEVILTTWMEHHSNLLPWRERFDVDYIEIDEQGRLRMDD LRAKLERYQGAVKLVTVTGASNVTGHRNPIHKIAELSHRYGARICVDGAQLVPHASVD MRPSHSIEHIDFLAFSAHKMYAPFGTGVLIGPRAFFDQGAPDYQGGGTAQMVTPDRVL WYDAPAKEEAGTPNLMGVVALVAAIRTLSAIGMKKVLQHEEGLLGYAYERLRWMEGIT FYGGIPLNQQQLSQRIGVISFNVEGLFHEDVAEYLAKEGGISVRNGCFCAQPYVQRLL HISRQEMERHIANPSLPHPGMVRVSLALYNTKEEIDIFLDVLGRIAGSRLRFFRSLRI GN" gene 903688..903762 /locus_tag="Dhaf_R0024" /note="tRNA-Thr1" /db_xref="GeneID:7257779" tRNA 903688..903762 /locus_tag="Dhaf_R0024" /product="tRNA-Thr" /db_xref="GeneID:7257779" gene complement(903888..904493) /locus_tag="Dhaf_0812" /db_xref="GeneID:7257780" CDS complement(903888..904493) /locus_tag="Dhaf_0812" /inference="protein motif:COG:COG2210" /note="KEGG: ckl:CKL_2222 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457311.1" /db_xref="GI:219666876" /db_xref="GeneID:7257780" /translation="MDTQQQAMAKQASVIELKPNTISLSPEKDIGLEKGINPGKETTR NKKMTLLIFSGEYDKALAGLILANSGREMGMDVTMFFAFWGLCLVRDPEKMTLEDKSL YEQMFGMITPKGIEDLPLSRMNMAGLGKAMLKEMMEDDDTPPLTAFLNGARKKGVKFY GCKLSVDVMGFKKEELLPEVQIMTAADFLQEAMESQIQLFI" gene complement(904522..905796) /locus_tag="Dhaf_0813" /db_xref="GeneID:7257781" CDS complement(904522..905796) /locus_tag="Dhaf_0813" /inference="protein motif:PFAM:PF02906" /note="PFAM: hydrogenase large subunit domain protein; KEGG: drm:Dred_1440 hydrogenase large subunit" /codon_start=1 /transl_table=11 /product="hydrogenase large subunit domain protein" /protein_id="YP_002457312.1" /db_xref="GI:219666877" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR004108" /db_xref="GeneID:7257781" /translation="MSNLTYEEIFGRLVKASYQGKLQEEIDSLESSGDEHTRQYVQYA LGKGDPDRVVFQVKSCNKRCSEEDHSCEASCLFNAVVRDMEGNVVIQDRNCTHCGECI ETCSLDSLVDKKEFIPLVEILQSKEIPVFAMVAPAIIGQFGGDVTMGQLRAALKHLGF YGMIEVALFADVLSLKEALEFDKHVQTDKDFVLTSCCCPIWVGMVKRVYDTLVPHISP SVSPMVACGRGIKRLHPDAKTVFIGPCIAKKAEAKEPDIRDAVDAVLTFHELKQIFEA TDIEPSEMEDIPSEHSSTSGRIYARTGGVSKSISDTLNRIRPDKPVKIKSIQANGIKE CKALLNDIMNNEIKANFYEGMGCPGGCVGGPKAIVDVDRGTEFVNKYGAEADALTPAD NQHVLELLKQLGIDSVEELLGGESAAIFQRDF" repeat_region complement(905920..907890) /note="ISDha10" gene complement(906257..907558) /locus_tag="Dhaf_0814" /db_xref="GeneID:7257782" CDS complement(906257..907558) /locus_tag="Dhaf_0814" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cbe:Cbei_2804 transposase IS116/IS110/IS902 family protein" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002457313.1" /db_xref="GI:219666878" /db_xref="InterPro:IPR002525" /db_xref="InterPro:IPR003346" /db_xref="InterPro:IPR006172" /db_xref="GeneID:7257782" /translation="MSQFLHDFVVGIDVSSEFSVVAMLAPSGELIRKPFRIDHNPAGF HKLLDILKKEEERLQRKPIYFVESTGIFHLPLFFFLRSNNLKGFVLNPLSVHSTKNFD LRKVKNDSKDAEAIARLAKYQDVKVSLVPEPQILALRMMTREYYALSDTLTEMKNRLS TDLYLLFPGFLDVFSGAFGKTALAILKDFPSPRAILAADTDSLTSLISKTSRKGTAWA TKKVNQLKDCAQLASSMPHEFSWLDAKIKVHIDGIESMQASLDGVVTQIQAMIDSELF PADAKRHIELLDGIPGIGFLTAATLIAEIGDFRLFNSAKALTAFFGLDPSVNQSGKFQ GDRNKISKRGTRIGRRILFTIAMASIRTTRKGDEINPVLREFYAAKCVNKKKKVALVA VMHKLLHYIFAVLRDQKPFEIRQPEDHQSWRNTKLRQAPAA" gene 908011..908086 /locus_tag="Dhaf_R0025" /note="tRNA-Thr2" /db_xref="GeneID:7257783" tRNA 908011..908086 /locus_tag="Dhaf_R0025" /product="tRNA-Thr" /db_xref="GeneID:7257783" gene 908287..909123 /locus_tag="Dhaf_0815" /db_xref="GeneID:7257784" CDS 908287..909123 /locus_tag="Dhaf_0815" /inference="protein motif:PFAM:PF01145" /note="PFAM: band 7 protein; KEGG: swo:Swol_2167 hypothetical protein" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="YP_002457314.1" /db_xref="GI:219666879" /db_xref="InterPro:IPR000163" /db_xref="InterPro:IPR001107" /db_xref="GeneID:7257784" /translation="MDSEKVVNMVPKMKMSKSFITFGLVIVLLVILALDAFVIVNAGQ RGIVLQLGAVRPIVLTEGLHFKIPFVQSVVPMEVRVQKSQSEQTAASKDLQIVTTTVA VNFHLDPIQVNKLYQNVGLSYGERIVDPAIGEAVKAITAQYTAEELISKRSEVSAKIK ETLASKLATYYMVLDEINITEFKFSQEFNNAIEQKQIAEQQALKANLDLQRIEIEAKQ KVEQAKAEAESLRLQKQEVTPELVQLREIEAKIKAIEKWDGKLPNVTGGAVPFIDVNS GQ" gene 909297..909965 /locus_tag="Dhaf_0816" /db_xref="GeneID:7257785" CDS 909297..909965 /locus_tag="Dhaf_0816" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457315.1" /db_xref="GI:219666880" /db_xref="GeneID:7257785" /translation="MNKKVRHYSAVILMGVVLGIVIAILKNYVGLDIDIIPLLLYLYV ILVISGVTFYLYIAVYTKNMNLVGRYVQRKRDHPYYALLISLVEKDYQEAEIQLERLS SFYKQAKIALTATLQIEKNLLREAEATAQEIKNSNIRYHNLALIALLHGNLEEFETYK VRIKHKHLHYALEAEAAFREQDYKKADELAELAMASTGGLQKWVYEKSLEKQKGNTQR RSYF" gene complement(909974..911179) /locus_tag="Dhaf_0817" /db_xref="GeneID:7257786" CDS complement(909974..911179) /locus_tag="Dhaf_0817" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: rci:RCIX712 major facilitator superfamily permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457316.1" /db_xref="GI:219666881" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257786" /translation="MAMTIKQPIQKQSIQYSKIGVLSLAHMLNDLYSNFLPQMLPFLI ILHPDFTATQAAILVSSFTISSSLVQPFIGYYLDRRGKRWFVYVGTLWMAIMLSLTGV VHENYILLVTLATLAGLGTAAFHPQASTMVNILSGDYKAVLLSAFIAFGNFGFALGPL LLVPLFEAHGLQGTLYMVIPGVMVSLLLLFFSPRVNVSPSTPPEFSALMASLKTAARE LSTIVGVIAVRSLAYTGMLTMLPLYFKSQNLSNIAASHLVTIMLAAGAAGGIIGGFIS DRFGRKPLIVGSLLLATPLFFAFLYTEGTLSTLFLALAGASLLSSFSVTVVAAQEVIP NNKAMAAGLTLGFAGGVGGLAVVLIGRIADLWGLQMAISALFVLPFVAGLLALFMKSR PAARVQRGA" gene complement(911206..911586) /locus_tag="Dhaf_0818" /db_xref="GeneID:7257787" CDS complement(911206..911586) /locus_tag="Dhaf_0818" /inference="protein motif:TFAM:TIGR00738" /note="TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cbb:CLD_1142 putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, BadM/Rrf2 family" /protein_id="YP_002457317.1" /db_xref="GI:219666882" /db_xref="InterPro:IPR000944" /db_xref="InterPro:IPR005471" /db_xref="GeneID:7257787" /translation="MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSK ILNKLVKEGMIHSSPGVNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPECSI KKVMLAAEKNMEEELRTKKISELV" gene 911771..913096 /locus_tag="Dhaf_0819" /db_xref="GeneID:7257788" CDS 911771..913096 /locus_tag="Dhaf_0819" /inference="protein motif:PFAM:PF01595" /note="PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ava:Ava_2766 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF21" /protein_id="YP_002457318.1" /db_xref="GI:219666883" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002550" /db_xref="InterPro:IPR005170" /db_xref="GeneID:7257788" /translation="MDSLWISIMIVLILIMANGLFAMTEIAIVTSKKNRLANLKDKGD SRAAYALMLAENPNQLLSTIQIGITLIGVITGAFGGATIAGQLAKYIETIPVLAPISY QFSFILVVGLSTYLSLIIGELAPKRIGMGNPEKVACRVAKPMYYFAKAGRPLIWFLSK STELVLKVLRIKPSTDPEVTEEEITSLIEQGVYSGVVEEIEQDMVEQIFYLGDKRLAD ILTPRTQLAWIDIEDTFVDIISKMNESPHTKFPVGKGSLDNFQGVVHTKDVFAKLVSG VDFAINDCIKDTLIHPESMKVFQALKTFQEAGHHEAIVIDEYGGIEGFVTLHDIMENI VGDMPLRGEQTPPEIIEKDEHSWLADGLVALDTFKRYFDIEEKAMPHTGNSYHTLGGY ITDKIGDIPKEKDSIIVGHLRLEVVDMDHVRVDKVMITRVNPEELEFQI" sig_peptide 911771..911839 /locus_tag="Dhaf_0819" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.946 at residue 23" gene 913240..914529 /locus_tag="Dhaf_0820" /db_xref="GeneID:7257789" CDS 913240..914529 /locus_tag="Dhaf_0820" /inference="protein motif:COG:COG2843" /note="KEGG: swo:Swol_1489 hypothetical protein" /codon_start=1 /transl_table=11 /product="Putative protein of poly-gamma-glutamate biosynthesis (capsule formation)-like protein" /protein_id="YP_002457319.1" /db_xref="GI:219666884" /db_xref="GeneID:7257789" /translation="MIKYPFPRTYFPSLLLLFLLISLSSVLTGCQGQSIPIGATEQTG PNEPVPTPLPEPELIDQKETITLTALGDILMHNTLIWSGSQPDGSYAFNFFGAVGELM EEGDYCTTNLEAALAGSEGGYTGYPLFNSPDAIADHLKDYGVDGVITANNHILDRGYR GAVRTVEVLEKAGLDVLGVRKNPGDSGYLIKDIRGVKVGYLAYTYGTNGLSLPSEHQY FINMLEKEQILQDIRQLRTQVDLLILVLHWGVEYSTEPTNEQRTLAREFLAAGADAII GSHPHVIQPVEYFNIDGKEKFVAYSIGNFIGDQRGQERNSGVILHLKFNIEKVIQPGK LESSASKGISDTLISQTTALKGVELIPTYSHSYTKGGRQQFRVVPVEKTIERIRADEE EVFSREDLPLLENVLKTTEERLNQLTSERKEHKGLSQ" sig_peptide 913240..913329 /locus_tag="Dhaf_0820" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.587 at residue 30" gene 914664..914975 /locus_tag="Dhaf_0821" /db_xref="GeneID:7257790" CDS 914664..914975 /locus_tag="Dhaf_0821" /inference="similar to AA sequence:KEGG:NT01CX_1670" /note="KEGG: cno:NT01CX_1670 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457320.1" /db_xref="GI:219666885" /db_xref="GeneID:7257790" /translation="MDALSIVVLLAVVVEKIVDLFKTVVSTIPFLPDKIRPFTLELIS LGIGILLAYETQIDALSLIGIQTKNGYVGVIITGLVVGKGANFAHDFFHLFNAKQRKV P" gene 915045..915806 /locus_tag="Dhaf_0822" /db_xref="GeneID:7257791" CDS 915045..915806 /locus_tag="Dhaf_0822" /inference="protein motif:PFAM:PF01510" /note="PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bcz:BCZK3407 N-acetylmuramoyl-L-alanine amidase" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase family 2" /protein_id="YP_002457321.1" /db_xref="GI:219666886" /db_xref="InterPro:IPR002502" /db_xref="GeneID:7257791" /translation="MKEQILVNNRPQEPLQPQGFVIHSTATPGATAQNEFNYFNSQHR AASAHYFVDWLELIHAIPENEVAWHAGYTANHRFLSVEMSEPQGHDPQKFQEVWKRTL WLVADACVRYGWTTHNVFSHRDISLTYGETNHTDPIDYLKSYGYTWEDMIMALEGEID GLQKINIGGDGKVEHLILVSRGADERAAGYLADYLQAPILYLDRLSNGYLDSAKKIYV VGGNTKPVDRAILISGTDRYGTCQKVLDFIRTGKV" gene complement(915918..916928) /locus_tag="Dhaf_0823" /db_xref="GeneID:7257792" CDS complement(915918..916928) /locus_tag="Dhaf_0823" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: azo:azo3262 glycosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_002457322.1" /db_xref="GI:219666887" /db_xref="InterPro:IPR001296" /db_xref="GeneID:7257792" /translation="MKVLFQVRQDYRKNPAGDTVQLLATAQALKNLGVQVFLSLNPKV QLEEYDLVHIFNATRVVDAAMYFENAKNQSKPIVVSPIYWNMNHYLKKVEMNSVALEQ WESYQPWRSQLLQDCDLLLPNGQAEMEEIQRDFQVTTPFKVIPNGFPQEYLGIDGTYF REQCPGLPEKFVLSVARISSRKNQKWLAQCCQELSLTLVLAGPINEPKYFEEVQVYPN VIYLGTIQGRLLASAYAAAKVHAMPSWFETPGLSSLEAGACGAVVLSTDQGCTEEYFQ DMAVYMDPFEEKSLTPALEKALTFSPEPLTKHIQKHYSWSRIGEMTLAAYKHVLVGSA HK" gene complement(916930..917130) /locus_tag="Dhaf_0824" /db_xref="GeneID:7257793" CDS complement(916930..917130) /locus_tag="Dhaf_0824" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457323.1" /db_xref="GI:219666888" /db_xref="GeneID:7257793" /translation="MVNLNSLMKYGDVLKQYPQLKPHFRRLGIPVSGCGIYYLLDMTL EQLAQRYHLTAETLLKALQRGY" gene complement(917118..918653) /locus_tag="Dhaf_0825" /db_xref="GeneID:7257794" CDS complement(917118..918653) /locus_tag="Dhaf_0825" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_1674 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457324.1" /db_xref="GI:219666889" /db_xref="GeneID:7257794" /translation="MPAYTSSSQSFLLLNENISYLLEIHNDGLTLSSSNGHPLFELKE SVLLAQGILDDAQQIHLAYIKVSGEFCYSVILADGHHQTMSLGKLDIRTQRFDRLLLF PAGKVIHIFYASSHYGLPDVWRITHLFWNGQTWKSAFLGEVVHPRYPLYHVLMDSRSN LHVLMMTFLGKRSVLLSSMFNGTFYLWSKRQEVLTIPREVVDMTAVITAQDEGHLFWA AKQPASDRFEIGHGVQGKINDFKSTWRIEASPATNLEGPWRGLGVIESQGMFNLLVNI NQAVLFQVQDRSWKPVLAHSGDFFSLHIAQKTEGITTYSHWLGITGQEAPLFAQELSL VRTPPLNDSSQISVHQTNDQFTAPHILPPDTLQHVEKDSSVQAAFHEKTLPETEAERT ATQAISEQSDSVACTAQAPLPVSTGQISPQETSDDSATSHHLSLIFSDLKESTTHITS NLECLSEKVDFLPEVLELLKELKSKNDQTLNALQQLETQVHHMQTLKEAAVKKGFWQR WLT" gene complement(918744..919397) /locus_tag="Dhaf_0826" /db_xref="GeneID:7257795" CDS complement(918744..919397) /locus_tag="Dhaf_0826" /inference="similar to AA sequence:KEGG:Clos_1673" /note="KEGG: aoe:Clos_1673 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457325.1" /db_xref="GI:219666890" /db_xref="GeneID:7257795" /translation="MADLYPYDPYRERVCIIVEKVFFSCQQRECFPNFPIDLPDCGGP CTFVDITFQNGVILPESIVITPIPSRPNFARAQFTVRVCFTATVRNAAGQLLTVPGCL PDIFKDIVIYYPPTRSEFDFNLRVETRSEILVPAIISGDDLIVTVGVFVIAKLTGFVQ LAIDAFGYCPEPPFCEEFPTEEPCIDFLNPNLTPFPTDFFPPQLPSPVPGPMYVNLT" gene complement(919467..920519) /locus_tag="Dhaf_0827" /db_xref="GeneID:7257796" CDS complement(919467..920519) /locus_tag="Dhaf_0827" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: swo:Swol_0058 glycosyltransferase-like protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_002457326.1" /db_xref="GI:219666891" /db_xref="InterPro:IPR001296" /db_xref="GeneID:7257796" /translation="MPTIIYPRTLPWSWMVQRPQQLMRELSYLGYTIFYEDRGAFPQP QVKKLWDSFYLCQGISPMTLAHPRPRILWLTFPQHLYLIDTYRPDAVVFDCSDEAKEE FAAWGPYIKPLLAQTKLVFASSQSLYDQLAPQHPEVTLLRNGVDFAHFCTPQKRPLDL PTGQPIIGYSGAIAPWLDWDLLKRVIEQHPNFHFVFLGALVMLKGFPLESPNVSYLGL KSYDSLPGYLHGFNVSLIPFKLTPMTMGCNPIKLYEYAAAGLPTVATPLPELIGAQKV IQSLSTGDSEQRREDCCPGLNLAATAEDFSQSIREILLKSVDQEALQAFALQNTWQKR AVEIHNKILKQGLYTG" gene complement(920675..921499) /locus_tag="Dhaf_0828" /db_xref="GeneID:7257797" CDS complement(920675..921499) /locus_tag="Dhaf_0828" /inference="protein motif:PFAM:PF00188" /note="PFAM: SCP-like extracellular; KEGG: sth:STH564 hypothetical protein" /codon_start=1 /transl_table=11 /product="SCP-like extracellular" /protein_id="YP_002457327.1" /db_xref="GI:219666892" /db_xref="InterPro:IPR014044" /db_xref="GeneID:7257797" /translation="MKKTKKFTIGVSLAVLLTVAAAPVQAALKVSNSYSSSGSNGSII SLRSYTPWVNNLTATTPSNPGTPSNHSSSDSTQNGSTLVNTTKGYGSVISLKNFKFTA KEAEKPTNTVPVQTQPAPSQPAPTQSVPAQPAPTQPTTPSTNGTTTLGTQEQAMINEI NKERAAAGLSPLQVDLRLVDVAQMKALDMKTNSYFSHTSPTYGSPFDMLKNAGIQYRS AGENIARNMSVDAAMAAFMSSDGHRKNILNPAYTHIGVGVVSSNSGNYYVQIFAQL" sig_peptide complement(920675..920755) /locus_tag="Dhaf_0828" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 27" gene 921818..922966 /locus_tag="Dhaf_0829" /db_xref="GeneID:7257798" CDS 921818..922966 /locus_tag="Dhaf_0829" /inference="protein motif:PFAM:PF04015" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: amt:Amet_3611 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF362" /protein_id="YP_002457328.1" /db_xref="GI:219666893" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR007160" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257798" /translation="MGSKVVLKYCPEYTSGVEEFLRSGLQELGGMEAFVKPGQKVFLK VNLLMKKRPEEAVTTHPSVVEAVVRLVQEVGGIPIIGDSPGGPYTVGALQGIYARCGL KEVAERTGAELNFNVGQEVVTHPDGKLVKSLTITKSVWDADVIISLSKLKTHAMMTFT GAVKNLFGVIPGLLKAEYHFKMPEVMQFADLLVDIATWVKPAVSIMDGIVGMEGDGPS AGQPRAVGALLMSENPFALDVAATHLIGLKPENVPTIMAARERGFVSRIEEVSLVGEP RSLWRIQNFVVPKSMSVNFIDRVPLPSGARRFILNQVRPKPLFNHDQCVGCADCVKNC PPQALRLNDQKRPEIDLEACIRCFCCQELCPHQAVEISKPGLARRLFK" gene complement(922983..923306) /locus_tag="Dhaf_0830" /db_xref="GeneID:7257799" CDS complement(922983..923306) /locus_tag="Dhaf_0830" /inference="protein motif:PFAM:PF03819" /note="PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pth:PTH_2554 pyrophosphatase" /codon_start=1 /transl_table=11 /product="MazG nucleotide pyrophosphohydrolase" /protein_id="YP_002457329.1" /db_xref="GI:219666894" /db_xref="InterPro:IPR004518" /db_xref="GeneID:7257799" /translation="MEIKDWQKQVDDWITQFEEGYWQPSSMMLRLTEEVGELAREVNH RYGEKPKKPDEPEGDLALEMADILFIIISMANSLNIDLEEAFARMMEKYRVRDSNRWT RKEQE" repeat_region complement(923353..924916) /note="ISDha8" gene complement(923424..924782) /locus_tag="Dhaf_0831" /db_xref="GeneID:7257800" CDS complement(923424..924782) /locus_tag="Dhaf_0831" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002457330.1" /db_xref="GI:219666895" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257800" /translation="MFNIRQERLFSLEEILETSPRESYALILGPLDINPLLEAVSKKA IFGAPTQLNYTAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEET PVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIEDQLSCTFTELAQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHP YLNPSYILADAGYDYIPIYQQARCIGARALIDYNKRNEQLPEDNDKYFRPICQKGYSY RYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRI AA" gene 925076..925891 /locus_tag="Dhaf_0832" /db_xref="GeneID:7257801" CDS 925076..925891 /locus_tag="Dhaf_0832" /inference="protein motif:PFAM:PF02457" /note="PFAM: protein of unknown function DUF147; KEGG: mta:Moth_2248 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF147" /protein_id="YP_002457331.1" /db_xref="GI:219666896" /db_xref="InterPro:IPR003390" /db_xref="InterPro:IPR014046" /db_xref="GeneID:7257801" /translation="MSQLLSQLQSSFDWRTILDIAVVAIVLYQLLMLIKGTRAVQLLK GILVLLILSNIAQFLKLSTINWLLDRLWSMFFIALPVVFQPELRRALEQIGRGKFFMR HPQTVGNEAMVQVIDELVRCAQVLSKNRIGALMVMERTTGLQNYVETGIKIDGVVSSE FLLNVFIPNTPLHDGAVIIRSDRVAAAGCFLPLSESNAIQKELGTRHRAAIGLTEVSD SVVIVVSEETGAISVAIDGVLTRFLDEKSLKELLCRELQVDTTTKSYVPFWRS" gene 925894..927207 /locus_tag="Dhaf_0833" /db_xref="GeneID:7257802" CDS 925894..927207 /locus_tag="Dhaf_0833" /inference="protein motif:PFAM:PF07949" /note="PFAM: YbbR family protein; KEGG: mta:Moth_2247 YbbR-like" /codon_start=1 /transl_table=11 /product="YbbR family protein" /protein_id="YP_002457332.1" /db_xref="GI:219666897" /db_xref="InterPro:IPR012505" /db_xref="GeneID:7257802" /translation="MKEMLQRNLGYKTISLVLAILFWLWVTSQGNSQTLDRDPTLTLS LIAKNTPANSMIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVKVEPI PNIKIVEISPRVVTLQLDTVEERMLPVTVEVSGAPVNGKKVGETIVKPSVVNVRGPSS LLGEVDKVLVELSAAGASETLQVSRPLLFRDKNGLAIFGPDPSVETITSSPTSVDIIV PIVAKELESKMVPLNATTTGTPAEGKEVRSIQVIPSGVQVYGEPEALAQFSALSIGSV NINGLSETKTYEISSDKVSLPEGLNYGSRTTFSVIVEMGSAVQDKTLYDLPIVLRNLP EDLVLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIE MVSIPDVTYTLKAKEDPPKEPDNPGTPGNPGNPGNSNNSGNQPVV" sig_peptide 925894..925992 /locus_tag="Dhaf_0833" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.899) with cleavage site probability 0.469 at residue 33" gene 927265..928869 /locus_tag="Dhaf_0834" /db_xref="GeneID:7257803" CDS 927265..928869 /locus_tag="Dhaf_0834" /inference="protein motif:PFAM:PF01266" /note="PFAM: FAD dependent oxidoreductase; KEGG: cno:NT01CX_1164 uncharacterized FAD-dependent dehydrogenase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_002457333.1" /db_xref="GI:219666898" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257803" /translation="MNLIWTNLRVPVEEDERQLPLMIARKLKVSQQSISNLRILRRSV DARKKPQLLFSYTLGFSLDIPYKEVNRVLHRVADLKPEPQIMPRPFMKPEKSLKHRPI VVGAGPAGYFAALTLAKGGYAPLVLEQGDDVETRSLKVENFWRTGQLDTESNVQFGEG GAGTFSDGKLTTRIADPRITEVLETFVEQGAPSEILFLAKAHIGTDILKIVTQRLREK IQSLGGEVRFRAKLTGLRHQNGKLVGVEVNHQEVVPAEAVILAIGHSARETYRLLLAQ GVHLEQKAFAIGLRIEHPQKLINTSQYGVEFHPKLGPADYQLTYQDTTTGRGAYAFCM CPGGKVVAAASDLERLVTNGMSEYRRDTGIANSALVVTVGKGDFQREHPLAGVEFQEY WEHQAFLAGDRDYKAPAQSVRDFLAKRVTGDFPLPASYTPGIQPVELHRVLPQAVGDV LDRALLSFERKIQGFAGEMGTLTGIETRTSAPVRITRDKMGEALHIQGLFPAGEGAGY AGGIMSAAVDGIRSAEGIMAQYNPAD" gene 929023..930360 /gene="glmM" /locus_tag="Dhaf_0835" /db_xref="GeneID:7257804" CDS 929023..930360 /gene="glmM" /locus_tag="Dhaf_0835" /EC_number="5.4.2.10" /inference="protein motif:TFAM:TIGR01455" /note="catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="YP_002457334.1" /db_xref="GI:219666899" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR005841" /db_xref="InterPro:IPR005843" /db_xref="InterPro:IPR005844" /db_xref="InterPro:IPR005845" /db_xref="InterPro:IPR005846" /db_xref="InterPro:IPR006352" /db_xref="InterPro:IPR016066" /db_xref="GeneID:7257804" /translation="MGKLFGTDGVRGVANKELTPDLAFRLGQAGAYVLSKEHPHPRIV IGKDTRISGDMLEAALIAGICSVGADVLRVGVLPTPGIAYLTRTLKASAGVVISASHN PVQDNGIKFFSSTGYKLPDAVEEEIEDLVHSHEKPWAIPVGSEIGRVIEIQDAQRRYM DFLKGTVGSLAGIKVVYDGSNGAASHVGPQVLRELGVEVIPLSVTPDGININAGCGST HPEVLQQAVIEHKADLGLANDGDADRLIAVDENGEIVDGDFIMVICALALKAKGQLME DSVVVTVMSNLGLHIALKEAGIRVYETQVGDRYVMEELLKTGARLGGEQSGHIIFLDH NTTGDGLLTALQLLAVLKEQGKPISKLAAKMQRLPQVLINVRVKDKKKAMENPYVFQK VEEVKRFLGERGRVLVRSSGTESLVRVMVEGQDHEQLMGLAQSVVDIIKREEL" gene 930881..932704 /locus_tag="Dhaf_0836" /db_xref="GeneID:7257805" CDS 930881..932704 /locus_tag="Dhaf_0836" /inference="protein motif:TFAM:TIGR01135" /note="TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: drm:Dred_0295 D-fructose-6-phosphate amidotransferase" /codon_start=1 /transl_table=11 /product="glucosamine/fructose-6-phosphate aminotransferase, isomerizing" /protein_id="YP_002457335.1" /db_xref="GI:219666900" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001347" /db_xref="InterPro:IPR005855" /db_xref="InterPro:IPR016059" /db_xref="GeneID:7257805" /translation="MCGIVGYIGKRPAIPVLLDGLKKLEYRGYDSAGVAVLEQDAITT CKAVGKLAVLEEKLGTDFSQTCIGIGHTRWATHGRPSDLNAHPHLDTEAKFAVVHNGI IENYIELKEWLVEQGHTFVSETDTEVLPHLVEYFYKGDLVATVREVLNKLKGSFAILV MSRQDPDILVAARKDSPMVVGLGEEEFFVASDIPAILNYTRKTYIIEDGEMVILTKNG VEVTDFEGKEKEKQLYEVKWDAVAAEKAGYDHFMLKEIYEQPRALRDTLISRLEDDKV VLNEVDLTAEQLRSFRKVFIVACGTAWHAGLVGKTLIERWVRLPVEVDIASEFRYRSP LVDEHTLVVVISQSGETADTLAALREAKRNGARIVAITNVVGSSVAREAHDVIYTWAG PEIAVASTKAYTTQLEGVVLLGLYLAQTRGTLATEKIRKIITALRRLPAQAQEILDES EHIKDLAQSFVEVEDAFFIGRGLDWNVAMEGALKLKEISYIHAEAYAAGELKHGTLAL ITDKTPVIALATQMDVYEKTLSNIIEVRARDARVIGITFKSNKDLDKSVDRVIYLPET IGELAPILTVIPMQLLAYYVSVARGCDVDKPRNLAKSVTVE" gene 933002..933706 /locus_tag="Dhaf_0837" /db_xref="GeneID:7257806" CDS 933002..933706 /locus_tag="Dhaf_0837" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457336.1" /db_xref="GI:219666901" /db_xref="GeneID:7257806" /translation="MEQNVKPFEKFFSGSHLILGEAGSGKTKLIWSILQDREYVKENS INIVLTDSEKRMWHDSYQNPVTIINPYDSDISWVTNPSKPGIYYCACDYAPRIITFLE CLATWAVQNERKFEQKVRVFIDISSKIWILPEFIEQVNRLHFIASSQEDDSIEIWAVL GSLKKLTNQAKPIFACINLVLMNPISPSWIDELKDIVGIQCGNLRDKLDGIRVDKKEG YYYAPSDDQELYFQSN" gene complement(933829..934746) /locus_tag="Dhaf_0838" /db_xref="GeneID:7257807" CDS complement(933829..934746) /locus_tag="Dhaf_0838" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: cbl:CLK_1588 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002457337.1" /db_xref="GI:219666902" /db_xref="InterPro:IPR001990" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7257807" /translation="MSIDHAILGILSWQPSTGYELKKIFEESSFMYWSGNNNQIYKAL IKMQEEELVTNEVIHQESSPSKKVYTITEEGLKKLKTWVLHSPEVPEIKKTFLVQLAW SDILNDQEINESLSSYENELKLHLALQQEKARRSLHSPNRTSRESLIWEMISENIIST YSHELNWVQETRRKLHEHQLIEEKEKMNYQIRETENKKYIELISIENRLNTENDTLDL ISLCWEHELSRLMLHYTTLSEDFFDLKTGVAGGIIQKFSNYGIKIVLIVPQETMQKGR FREMTAETNKGNHFRMYESKEEAEAWLLE" gene complement(935009..935866) /locus_tag="Dhaf_0839" /db_xref="GeneID:7257808" CDS complement(935009..935866) /locus_tag="Dhaf_0839" /inference="protein motif:PFAM:PF02574" /note="PFAM: homocysteine S-methyltransferase; KEGG: ckl:CKL_0976 MetH1" /codon_start=1 /transl_table=11 /product="homocysteine S-methyltransferase" /protein_id="YP_002457338.1" /db_xref="GI:219666903" /db_xref="InterPro:IPR003726" /db_xref="GeneID:7257808" /translation="MILDKDSYVIFDGAMGTMLQKYDLAPGQPPEVLNITRPEVIEEV HRKYIKAGSNIITTNTFGAIETKLNGTGYSVEEVVQSAIAIARRAAGKNLVALDVGPT GELIEPLGDLSFEEVYDLYACQIKAAALTGNVDLVLIETFFDLTEAHAAIRAAKDHSS LPVICTFTFQQKGRTLMGKDIKTVVTSLEEYGVDAVGVNCSLGPGEMLSIVETMVSST QLPILVQPNAGLPKLIGDRTVYDVEPEEFARYIQVMANLGVKWFGGCCGTTPEFISAI KESLGLKHN" gene 936333..937274 /locus_tag="Dhaf_0840" /db_xref="GeneID:7257809" CDS 936333..937274 /locus_tag="Dhaf_0840" /inference="protein motif:PFAM:PF00553" /note="PFAM: cellulose-binding family II; KEGG: bcy:Bcer98_0373 glycoside hydrolase family protein" /codon_start=1 /transl_table=11 /product="cellulose-binding family II" /protein_id="YP_002457339.1" /db_xref="GI:219666904" /db_xref="InterPro:IPR001919" /db_xref="GeneID:7257809" /translation="MKRVILLLALILAMVSSITAGTLASYTVAIDNLAGGNVVAKEFI FVGEGTDTFQEGLKIAPSETLQWQFKVKNYERHVVTETDMYYKLTFDVFASPGKKAID PLTVTVKDGTGAILNQMTGVGTFDLLGAFPLSETGQERNILVEIAWPDGGKSDKDYAG KEFGTSIIVNAQASQVPLDSNPNPETPEGQVSVLYETTTPWQNGQSGEYQYQYKITIT NNSSVSIEDWYITFLLQNDRLNNAWNAKLISRSDEGIYRFENPAYNNVSMDNILPGQS VSFGGLASGMGTETLRNIGVGGSNTSLITNVNVMHQP" sig_peptide 936333..936395 /locus_tag="Dhaf_0840" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.564 at residue 21" gene 937296..937418 /locus_tag="Dhaf_0841" /db_xref="GeneID:7257810" CDS 937296..937418 /locus_tag="Dhaf_0841" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457340.1" /db_xref="GI:219666905" /db_xref="GeneID:7257810" /translation="MRAKVILIFALMVMVLGSLMVSTLSNYNSVSSFGISITPY" sig_peptide 937296..937367 /locus_tag="Dhaf_0841" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.431 at residue 24" gene 937452..937982 /locus_tag="Dhaf_0842" /db_xref="GeneID:7257811" CDS 937452..937982 /locus_tag="Dhaf_0842" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457341.1" /db_xref="GI:219666906" /db_xref="GeneID:7257811" /translation="MKKVLSIVALALVVSTSIISGTLAMYTTDIDALAQGSTVAKEFI LTEGGTDTFVENVKIAPSETMSWQFSVKNFEGAVVSETAMDLDIDVDVVAADGKKVIA PLVFTVENSKGDVVGTVNSLGKVELNDEFVLSAQGQEKVYTVSVNWPSDNNVDINYAG TGYGTAIQVSVTGTQK" sig_peptide 937452..937526 /locus_tag="Dhaf_0842" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.746 at residue 25" gene complement(938097..938318) /locus_tag="Dhaf_0843" /db_xref="GeneID:7257812" CDS complement(938097..938318) /locus_tag="Dhaf_0843" /inference="similar to AA sequence:KEGG:CA_P0018" /note="KEGG: cac:CA_P0018 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457342.1" /db_xref="GI:219666907" /db_xref="GeneID:7257812" /translation="MSILLLVIVFLGVVLFELPELIQKRYWRELITVTFLLSIGFILS LLLAMGIEVPNPSNALVYIFKEVLHLSYP" gene complement(938331..939425) /locus_tag="Dhaf_0844" /db_xref="GeneID:7257813" CDS complement(938331..939425) /locus_tag="Dhaf_0844" /inference="protein motif:TFAM:TIGR00912" /note="TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cac:CA_P0017 spore germination protein, GrkB" /codon_start=1 /transl_table=11 /product="spore germination protein" /protein_id="YP_002457343.1" /db_xref="GI:219666908" /db_xref="InterPro:IPR004761" /db_xref="GeneID:7257813" /translation="MIKLEKEIISSSQLNFLVIGFVTGGLVTVPYSTQIINQDNWLAV IIGFILSLPMVLIYIWLAQKFPQNNLLEIHDLVYGPLIGKLISAAYIVFIFNLLIYNL VYVGDFLLTYLLPETPMWIVLLMFTFVCAWAVRLGLEVIARVNPLFVVITLFITFSTM TLLIPEMDFSNLIPLFDTPMLDFIQGVHIMITIPYLEIVIFLFFLPSVNNKKQIKHSI LFGFCFGSLFLLLPIIRNTTVLGSLVGILTSPSYESIRLIDIGNYLTRLEVLYAITLI IMLFIKSSLFYYVTVLGIAQLLRLRSYLPLVVPLGIIGICLSLIVHESSLLNIDTTVD VWPFFALPFEVFLPILTLLLAKVRKLPKHT" gene complement(939432..940601) /locus_tag="Dhaf_0845" /db_xref="GeneID:7257814" CDS complement(939432..940601) /locus_tag="Dhaf_0845" /inference="protein motif:TFAM:TIGR02887" /note="TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cac:CA_P0019 spore germination protein, GrkC" /codon_start=1 /transl_table=11 /product="germination protein, Ger(x)C family" /protein_id="YP_002457344.1" /db_xref="GI:219666909" /db_xref="InterPro:IPR008844" /db_xref="GeneID:7257814" /translation="MKSRKYLIVIFLMCTPLILNITGCWNQRELNSLAIVMGLGIDKA QEPNQIQVTAQIANPKALKSSSLGGPDSQAFWNIQNTGDTLFSILRDFTHESNRKLYF PHIQVLILGRDYAEEGIQKELDFFARDHETRLNIWLVVSEGNARDVLNIKPVIDRIPA INISKLLDDQDPNSQTSTSQLNDFLSDLISPTTAPTAPLVEIIRKGGNESLQVKGTAV FKGDKLVGELNKYETRGLLWARDEVKSGIIDVECPECGSKVSLEIIDSKTKVSAEIVD NQVIMKVYIQEKGALAAQYCAENLRTKEKVAAIERNKAAAIQDEVLAAFKKAQELNAD IFGFGEVVRKKHLKEWKNMQEHWDEIFPEIIVEVTVDASIERSGRIHYPPVTDKE" gene complement(940638..942260) /locus_tag="Dhaf_0846" /db_xref="GeneID:7257815" CDS complement(940638..942260) /locus_tag="Dhaf_0846" /inference="protein motif:PFAM:PF03323" /note="PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA" /codon_start=1 /transl_table=11 /product="GerA spore germination protein" /protein_id="YP_002457345.1" /db_xref="GI:219666910" /db_xref="InterPro:IPR004995" /db_xref="GeneID:7257815" /translation="MFQYIKKQLQGMKLMHLNTIDGEKDIYEYSTTPLSPDMYKNLEE IKTILGSSYDIAFREFDFGPQGRIRGTLVFLISMIDKTFLNESIIKPLMFDDRLIEKE EEPELLNIDYIKTTMLSMDEVHTAATINEVIENCLKGYAVLVISGLNESIVIRAYGGE TRSLDEPKTETVVRGPRLGFTESLLTNTSLLRRYVRTPNLTFETTIIGRETKTVVCIA YIKGIANPSLIEEIKRRLDRINTDAILESGYIEQFIEDAPFSIFSTVGNSERPDAVAA KILEGRAALLINGTPFVLTVPVLFIESFSSTEDYYSRPYFVGIVRMIRFLSYFISVFG PAIFVALSTFHQELIPTPLLFTMAAAEEDVPFPAVIEALTMGAVFEILREAGIRLPRP VGQAVSIVGALVLGESAVQAGLVSQPMVIVISLTAVASFTVPAQTDSGAVLRLIMVLL AGAMGGFGIMIGFIGVMIHLASLRSFGTPFFSPFAPLTPIDLKDTIVRFPLWAMLTRP RLIGWNDPQRQAFRLKPTPPSKNRNPRNKPDQ" gene 942416..942958 /locus_tag="Dhaf_0847" /db_xref="GeneID:7257816" CDS 942416..942958 /locus_tag="Dhaf_0847" /inference="protein motif:TFAM:TIGR02228" /note="TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24 and S26 domain protein; KEGG: oih:OB0800 signal peptidase" /codon_start=1 /transl_table=11 /product="peptidase S26B, signal peptidase" /protein_id="YP_002457346.1" /db_xref="GI:219666911" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR001733" /db_xref="InterPro:IPR011056" /db_xref="GeneID:7257816" /translation="MSSTKYTSRQQIEDMRKKIQVEKQKKTDLHSPKKLIQSRWGRRN GLLKVVSGILFGAVVIVLLFSLVSINMAKNRGEIPNIFGYYLFVIESGSMEPTLKVGT VIISRRPGEPDRLEESDIVTFRTRSGAIVTHRIIEVIEEGEGNIRYLTKGDNPNNATD QEALTPERVIGVFLARLPLL" gene 942996..943973 /locus_tag="Dhaf_0848" /db_xref="GeneID:7257817" CDS 942996..943973 /locus_tag="Dhaf_0848" /inference="protein motif:COG:COG1131" /note="KEGG: esi:Exig_0695 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC-type multidrug transport system ATPase component-like protein" /protein_id="YP_002457347.1" /db_xref="GI:219666912" /db_xref="InterPro:IPR003439" /db_xref="GeneID:7257817" /translation="MVNSAMLQRVVLMENLSSAEYLLREGESPQRVLKDINLQINKAE IWGIIGTSGFEIKLLLEIMANIRPYESGRCVLIERGMMRLKRVILKHIFYIGNSDMLY NTMNVLEFLMLATAKWKIDVVERQEQIFELIIKVGLGHLSLTSIGLLTREEKAVVTLV AAAYSDAQMIVFNLPEYEFDSILIEAIADIADFIKEQEKTLIVATPICTLIEKACTHI AVLAEGRLIHQGLVEDFRYQYDNVEIIIKDEDLKGTKEALRGILSNHQVIAEDNRLLI KREASLPSDPEMIYKKIIESGYIPQSMEKNGKTVEYALEELMRQYDLSE" gene 943957..945348 /locus_tag="Dhaf_0849" /db_xref="GeneID:7257818" CDS 943957..945348 /locus_tag="Dhaf_0849" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bsu:BSU24630 type I signal peptidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457348.1" /db_xref="GI:219666913" /db_xref="GeneID:7257818" /translation="MIYRNSFLKKELRQAYTENKISTNRKIAFALFLGLISFAFYFVF QTLQESVLSDVVPEIMQPSYFSTLYIYIHLAYFLSAGYYIIYYDTLFFSEIRKNSWYL MIHMGYNPARMFFSKLLALGYTALFVYTLGFAAIILLTALLKFPFIFAYLPSLYLVGF TDLVMLTILSMVFSLYARTIINARYWIGVSAFLILLLKIVLGHYDVISNRIAMQNIFN LFDMNTSLYFPLWIVVVIICGLVCLFRAGNLARYYNLSEDLSLLPPDVSLILMNSKTE KKELVAIGGKQIVERKLIHKVVTVLLAAFIGVALAINVFIIVINASSTGQEVSIRGVI PFIFQSNTMEPEIMVNDLTYFQRIDPQYPVELEQIVLFKENNVLYIERVAEIHGDRLV VDIDNYPPMSQIGAMKKTISRENIHGVYSGRNRWLGALILFANTIMGRILFLLIPAIL LFYHEQIVKLLKR" sig_peptide 943957..944103 /locus_tag="Dhaf_0849" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.562 at residue 49" gene 945573..945905 /locus_tag="Dhaf_0850" /db_xref="GeneID:7257819" CDS 945573..945905 /locus_tag="Dhaf_0850" /inference="protein motif:PFAM:PF00085" /note="PFAM: glutaredoxin 2; Thioredoxin domain; KEGG: cbe:Cbei_3329 thioredoxin domain" /codon_start=1 /transl_table=11 /product="Thioredoxin domain protein" /protein_id="YP_002457349.1" /db_xref="GI:219666914" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR008554" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7257819" /translation="MSLIQLDGCGLEELIYDIGEGCLIFFYRNNCPVCEEMAPVLEEL QPKYKGQFGFYYVNIDENKEVINCFKLDEIPQVLFFKDGEYQGKLSGEFNQAQVVEKI QENLVDLV" gene 945957..947177 /locus_tag="Dhaf_0851" /db_xref="GeneID:7257820" CDS 945957..947177 /locus_tag="Dhaf_0851" /inference="protein motif:PFAM:PF00070" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Thioredoxin domain; KEGG: cbe:Cbei_3328 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002457350.1" /db_xref="GI:219666915" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR008255" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7257820" /translation="MSNSYDLIIIGGGPAGLAAGIYGGRAKLRTLIINKGTIGGMVDT TREIVNYPGYIHTSGPDLMSDFKKHAESFGVEFLKDEVVSTELSQDLKKVTTKKKKEF YGKAVIIAAGTQPRLLNIPGEKELRGSGVAYCATCDAEFFQDEDVVVVGSGDQAIEEG MFITKFARKVTVIVLHDEGILDCNKVSAEKAFQNEKMEFVWNSTLEAVLGEENVEGVQ VKNLKTGGSSLLPCQGVFFFVGMIPATEFLQNSGIEMDRRGYIPVNDLMETNLPGIYA VGDNRVKYLRQVVSAAGDGATAAVAAERYIEELEAFQKNILHSEKKVLLAFFNAANTA SLEFTVVMEELIQEHSDMYKLVKVDMATKKSLAEKYGVTNVPAVVMLDKGEKIKELEC SLDKEILAEQLGKE" gene complement(947242..947715) /locus_tag="Dhaf_0852" /db_xref="GeneID:7257821" CDS complement(947242..947715) /locus_tag="Dhaf_0852" /inference="similar to AA sequence:KEGG:Ctha_0647" /note="KEGG: cts:Ctha_0647 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457351.1" /db_xref="GI:219666916" /db_xref="GeneID:7257821" /translation="MADEEKIKKVSIIISKSSLEGVYPGLIMANGARMIGIEANLFFT FFGLNAITKNKMDSIKVATVGNPAMGIPSLIGILPGMSAMATSMMKKQMEELDIPPIP EFIEMISDAGGKLYACLATVEMFKLKKEDFCDQLDSILTVGDFYNLSAGGQIIFT" gene complement(947730..948044) /locus_tag="Dhaf_0853" /db_xref="GeneID:7257822" CDS complement(947730..948044) /locus_tag="Dhaf_0853" /inference="protein motif:TFAM:TIGR03342" /note="TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: cts:Ctha_0648 sulfur relay protein, TusE/DsrC/DsvC family" /codon_start=1 /transl_table=11 /product="sulfur relay protein, TusE/DsrC/DsvC family" /protein_id="YP_002457352.1" /db_xref="GI:219666917" /db_xref="InterPro:IPR007453" /db_xref="GeneID:7257822" /translation="MQKVIAGYTVDVTQEGYLVNQSQWNKDIASEIAKELGIEDLTPG HWKVIEFLQKDFAETGKIPTIRRVNKVGNIGTQELYALFPEGPLLKATKIGGLSKPVS CV" gene complement(948063..949313) /locus_tag="Dhaf_0854" /db_xref="GeneID:7257823" CDS complement(948063..949313) /locus_tag="Dhaf_0854" /inference="protein motif:PFAM:PF07992" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cts:Ctha_0650 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002457353.1" /db_xref="GI:219666918" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257823" /translation="MKRVLILGAGTAGTMMANHLQRKLDKKDWAITIVDQYEKHYYQP GFLFIPFEIYSEKDVIKKISDFIPKGVEYIKSPIELIEAEKNQVLLSSGWVLPYDLLI IATGCEIVPEEVDGVMDGWRKDIFDFYTLEGALALRDKFRDWPGGRLVVHISEIPIKC PVAPLEFAFLSDWFFAEKRKIRNKVELIYVTPLDSAFTKQKCSDVLGHLFPQKNIQLI NNFSIPRVDAKNKKLISVDGKEVDYELLVTVPVNMGSPLIERSGLGDELNFVPTHMHT LQSKKHENIFVIGDASDLPASKAGSVAHFQAEILTENILNYIADKPLTAHFDGHANCF IESGYDKAFLIDFNYELEPVEGTFPLPGIGPFSLLKETKVNHLGKLAFKAIYWNMLLR GIPIPTVPPEMKTRGKKLDGLYQP" gene complement(949333..949602) /locus_tag="Dhaf_0855" /db_xref="GeneID:7257824" CDS complement(949333..949602) /locus_tag="Dhaf_0855" /inference="protein motif:PFAM:PF02583" /note="PFAM: protein of unknown function DUF156; KEGG: amt:Amet_1181 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF156" /protein_id="YP_002457354.1" /db_xref="GI:219666919" /db_xref="InterPro:IPR003735" /db_xref="GeneID:7257824" /translation="MAASEKEDILMRLRTIRGHISGIEKMIEEEKECADILVQVSAVT SSMNKVKNMLNRHFVDHCLDKVITEEKDLKSEVSKILDNILKFNE" gene complement(949870..950100) /locus_tag="Dhaf_0856" /db_xref="GeneID:7257825" CDS complement(949870..950100) /locus_tag="Dhaf_0856" /inference="similar to AA sequence:KEGG:687518" /note="KEGG: LOC687518; hypothetical protein LOC687518" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457355.1" /db_xref="GI:219666920" /db_xref="GeneID:7257825" /translation="MQNQNQNSSSDVQRVKQEIQSDLQSAAQSQTGSAGTSSQSTQSS SQGMQSSTMSSSLNTQSEVQKVKQEIQQDLHS" gene 950339..950536 /locus_tag="Dhaf_0857" /db_xref="GeneID:7257826" CDS 950339..950536 /locus_tag="Dhaf_0857" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457356.1" /db_xref="GI:219666921" /db_xref="GeneID:7257826" /translation="MQVPACYRSFGLKSLSMENTLLTDETFSDGKRMDKNASSFKESI ERSPNPKKHRKYKAPFLGTRE" gene complement(950624..951553) /locus_tag="Dhaf_0858" /db_xref="GeneID:7257827" CDS complement(950624..951553) /locus_tag="Dhaf_0858" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: abc:ACICU_01771 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457357.1" /db_xref="GI:219666922" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257827" /translation="MRIDHLKYITVVAETGSISHAAERLYITQQGLSQAIRQMERELG VSLLNRTGNKIHLTQVGKRIVEKAKELLVTYDELTDIAKTTGDNFFHTKSSKRITLLT TPFLSGTLLPDMICRFSQKHPNANFVINEKLPQEIIEEICEDRNAIGLFSGLSDRLNH KDFSNANLTFQPFFECEQLICVTKSSPLANRKSVKPSELAKYPLALYDVGQNASQLSE LLKPFGEVKVMLRTGNSKLYRETIASGLAIGFSNSFAEYFEKRNSVVTIPIENTPKFI LGWVYCKDTPRNEMQSEFIDQLIQYVNRIRVSA" gene 951833..952156 /locus_tag="Dhaf_0859" /db_xref="GeneID:7257828" CDS 951833..952156 /locus_tag="Dhaf_0859" /inference="protein motif:PFAM:PF00085" /note="PFAM: glutaredoxin 2; Thioredoxin domain; KEGG: cbe:Cbei_3329 thioredoxin domain" /codon_start=1 /transl_table=11 /product="Thioredoxin domain protein" /protein_id="YP_002457358.1" /db_xref="GI:219666923" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR008554" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7257828" /translation="MSLTKLDSKSFEEKIYDNGERCLVIFSRKSCHVCKEVVPVLEEL APNYEGEFGFYYVDVEDNKELYQTFSLRGVPQILFFNEGEYCGKFAGEVEEEQVQAKI SEILG" gene 952217..953428 /locus_tag="Dhaf_0860" /db_xref="GeneID:7257829" CDS 952217..953428 /locus_tag="Dhaf_0860" /inference="protein motif:PFAM:PF00070" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Thioredoxin domain; KEGG: cbe:Cbei_3328 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002457359.1" /db_xref="GI:219666924" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR008255" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7257829" /translation="MDNYYDLIIIGGGPAGLTAGIYGGRAKLKTLIINKGTIGGMADN TREIVNYPGYVNTSGPELMEDFKRHAKSFGVEFLKDEVVSADLSQDLKKIMTKKKKEV YGKAVIVAVGTQPRLLNIPGEKELRGNGVAYCATCDAEFFEGEDVVVVGSGDQAIEEG MFITKFARKVTVIVLHDKGVLDCNKVSAEKAFQSEKMDFVWNSTLEAVLGDENVEGVK VKNLKTGTSSILPCQGVFFFVGMIPATEFLKDSGIEMDHRGYISVNDLMETNLSGVYA VGDNRIKYLRQVVSAAGDGATAAVAAERYIEELEAFQKNILNSEKKVLLVFFNAADTQ SLEYSSLVEELHKEHSEEYTLVKVDMATKKSLAEKYGVINAPAVVVLDKGEKVKDMEC SKDKATLAGQL" gene complement(953536..954903) /locus_tag="Dhaf_0861" /db_xref="GeneID:7257830" CDS complement(953536..954903) /locus_tag="Dhaf_0861" /inference="protein motif:TFAM:TIGR01415" /note="catalyzes the formation of L-tryptophan from indole and L-serine" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit beta" /protein_id="YP_002457360.1" /db_xref="GI:219666925" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR006316" /db_xref="GeneID:7257830" /translation="MTKTPYKIYLSEEEMPKSWYNLKAVMKELPPPMLHPGTLKPCTI EDLQPVFCDELIEQELNTKDLYIEIPEDIRDFYKMYRPSPLVRAYCLEKLLDTPAEIY YKFEGTNTSGSHKLNSAAAQVYYAKKQGLTSLTTETGAGQWGTALSMACAYYQIDLTV YMVKISSEQKPYRKAVIETYGGKVIPSPSDTTEIGKKILAENPGTGGSLGCAISEAIE VALKSENCRYVLGSVLDHVVLHQTVIGEETKIACEKYGIQPDIMIGCVGGGSNYAGLI APFFGDKLQGKNNITFIGVEPASCPSLTRGKYAYDFGDTGKTTPLLKMYTLGSGFIPS PNHSGGLRYHGMSGIVSKLYHDGLMEARAVEQSKIFDAATLFARSEGILPAPESSHAL RVAIDEALKCKETGEKKTILFGLSGTGYFDLSAYMNYNAGTMTDFIPTDEDLEKSFAT LPKVD" gene 955460..955726 /locus_tag="Dhaf_0862" /db_xref="GeneID:7257831" CDS 955460..955726 /locus_tag="Dhaf_0862" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457361.1" /db_xref="GI:219666926" /db_xref="GeneID:7257831" /translation="MSFQSDFQILHGEIKKLGKLDQHNISGSKKFSVLKDQILTVLEA SFGKTSREYRIVKLTKSPVTVLKVMNHIVARSATLTCQSIAVNI" gene 956042..956806 /locus_tag="Dhaf_0863" /db_xref="GeneID:7257832" CDS 956042..956806 /locus_tag="Dhaf_0863" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mbn:Mboo_1010 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457362.1" /db_xref="GI:219666927" /db_xref="GeneID:7257832" /translation="MITWDQVIQGMLKRKEILALTVKAVCILSFVWAALFYILLFIDF PYAKLNAVANGIQFFSGLAIGMLVICYARFSCQRYLVLGVALAVLSWTLGQLYWFSVI FLNGSSLPYPSIADLGFIGTYFFLIGVIHTITRGIPQYTIEIKYWNLWPLGLLVIPIF LALAGSSNLLINIDNLVLTLAIVYTLWKAQPIFPIIRYRLFIAGLCLLCLSDMIFIIC VCLIPDTCTLSTDALFPAALSLTAYGFMKVEEMSDG" gene 956799..957434 /locus_tag="Dhaf_0864" /db_xref="GeneID:7257833" CDS 956799..957434 /locus_tag="Dhaf_0864" /inference="similar to AA sequence:KEGG:Mboo_1011" /note="KEGG: mbn:Mboo_1011 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457363.1" /db_xref="GI:219666928" /db_xref="GeneID:7257833" /translation="MGEAIFVGTIIPLFFLAIILKGEQRLLILFFTWGLIAFAISLTL NNALVRHFQINTQQLSTTWAPIIEEFTKALPLGYFLFKSEKKIPIVYFGIAAGIGFSI QENYVYLLGHMHESGSPVPFIITRSVTTCLIHGTTTGIVGFGLSIARQLNGIIWPLLF GLYTVAVTIHALYNLYIYSSYQSIGLFMPLFLYLIGFAVLNIKEDKGREKD" gene 957519..958265 /locus_tag="Dhaf_0865" /db_xref="GeneID:7257834" CDS 957519..958265 /locus_tag="Dhaf_0865" /inference="similar to AA sequence:KEGG:Amet_1333" /note="KEGG: amt:Amet_1333 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457364.1" /db_xref="GI:219666929" /db_xref="GeneID:7257834" /translation="MSQMHQQLINEYTRTRLNEEAVSIERIYFYKTDKRVNPKQEEPF WHAAGDIPILVSAPHAVRHFRQKKIKMSDEYTGSIVYLLNKLTGCHAIAVTKLYGGDP NVDSPCIYKEKLAQLCRQGKIKLLLDIHGAARDRDFDVDFGTNNRRNLLEKMHTDEIL AQNFRNCGFSKISSDYFAASSPNTIANFAARELGIPAVQIEINKHYRVPAQNPQGFHR LMAALVESINSVGRRYQEGWKDINRERKIR" gene 958353..959516 /locus_tag="Dhaf_0866" /db_xref="GeneID:7257835" CDS 958353..959516 /locus_tag="Dhaf_0866" /inference="similar to AA sequence:KEGG:SGO_1507" /note="KEGG: sgo:SGO_1507 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457365.1" /db_xref="GI:219666930" /db_xref="GeneID:7257835" /translation="MQNIFDYLDWRGDLSFAQDGFNQVDNLIFSILAYLEFDGILPSE ASRDSISLTKAGEKYFKGLAHQKLQNSINPFFREIPKLLVKTSLATRFKEIQLSSYVN LVDHEICNQFSAMVFSISQGEHYIAFRGTDDTLAGWKEDFQMSFRDEVKAQRDAISYV EKVVGKYQGKLYLGGHSKGGNLAVYSAAAMEPEVQGRIIGVYNNDGPGFLTHVLEREG YQRILDRIHTFVPKSSVVGMLLEHGEEYITVNSNGLSVMQHNPFFWEVRGSHFVYEKN LTKGSKNFNKTVRLWLNQLSMEQRAEFVDALFDIFQATGATTVSDLSQKKLTLANDMI KSYKTLDPLTKSHLKKTLKIFFDKTQKVWISSFEADVASLLARTPAKKKKDST" gene complement(959530..959958) /locus_tag="Dhaf_0867" /db_xref="GeneID:7257836" CDS complement(959530..959958) /locus_tag="Dhaf_0867" /inference="protein motif:PFAM:PF06803" /note="PFAM: protein of unknown function DUF1232; KEGG: cli:Clim_2517 protein of unknown function DUF1232" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1232" /protein_id="YP_002457366.1" /db_xref="GI:219666931" /db_xref="InterPro:IPR010652" /db_xref="GeneID:7257836" /translation="MQIGQNLKDKIMAKFNHYQEESKKTLQNINLTQDKLNAAFMKAE KLNINTGPIHKVYQDILILIQVVKAYISKDYQEIPAGSIIAILAALIYFLSPIDILFD YLPGVGYVDDMFVLGLVLKQVDSDLQKFSLWKQSKDPAES" gene complement(960124..961182) /locus_tag="Dhaf_0868" /db_xref="GeneID:7257837" CDS complement(960124..961182) /locus_tag="Dhaf_0868" /inference="protein motif:PFAM:PF01077" /note="PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cno:NT01CX_0265 anaerobic sulfite reductase subunit C" /codon_start=1 /transl_table=11 /product="nitrite and sulphite reductase 4Fe-4S region" /protein_id="YP_002457367.1" /db_xref="GI:219666932" /db_xref="InterPro:IPR005117" /db_xref="InterPro:IPR006067" /db_xref="GeneID:7257837" /translation="MSLSINEREKMIKTCEEIIARCDKPFVWEDDGIYESERAKSPFN LFLPQEQIVQELSALFETFCGTPYIYDQIKAVCHLEAEWYEYGTYGLDRDFTRVLSRY SLKPEYVEQVKAHFTKRLKELLQEQSALLKGKGFLLNKDGVHFSCRVVVPGGKMNAQQ SKRVSEICTQYGSGYFYLTQRENIEIPGILLDNLNEVSQSLAEVGLSIGSTGPRPRPI TTCKGAVCKFSLYDTEGYTSQLNEKIYKGYYDVTLPGKLRIITSGCFNNCSMPHVGCI GIIGKKKDQVAISLGGMAARKQFLGQEIQGLYTLDEATGIIEKAIQYYKEHGNKGERF AQMIERLGFETVEKALIG" gene complement(961245..962168) /locus_tag="Dhaf_0869" /db_xref="GeneID:7257838" CDS complement(961245..962168) /locus_tag="Dhaf_0869" /inference="protein motif:PFAM:PF00781" /note="PFAM: diacylglycerol kinase catalytic region; KEGG: mxa:MXAN_4683 conserved hypothetical protein TIGR00147" /codon_start=1 /transl_table=11 /product="diacylglycerol kinase catalytic region" /protein_id="YP_002457368.1" /db_xref="GI:219666933" /db_xref="InterPro:IPR001206" /db_xref="InterPro:IPR005218" /db_xref="GeneID:7257838" /translation="MNNNPWFAIVNPASANGQTRKIWPKIYKRLLDQGVNLEFAYTTG PGDATNLTRQAMHSYTQILAVGGDGTLNEVVNGFFADQKPINPEASLAVLSHGTGGDF LRTLDQKRGLPSLLEVLHRQKIVPIDCGLVQYQDATGQLYTRYFLNVADVGLGGMAVS RVNQHSKFLGGKLSFLLGGIMTILTYKNKNMKCVIDGKIVVNGPANSIWIGNGRFVGG GMMIAPHAELDDGLFDVVVLGNLSMFQLLRHLPKIYQGHHLEVPDVTVHRGKEVSIIS NPSAYLELDGEHPGFTPVHFSLIPQGIRLWT" gene complement(962180..962602) /locus_tag="Dhaf_0870" /db_xref="GeneID:7257839" CDS complement(962180..962602) /locus_tag="Dhaf_0870" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA domain protein; KEGG: NEMVEDRAFT_v1g240837; predicted protein" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_002457369.1" /db_xref="GI:219666934" /db_xref="InterPro:IPR006015" /db_xref="InterPro:IPR006016" /db_xref="GeneID:7257839" /translation="MTKILVPVDGSPNSDKAIHYALTLARCKDDLLIFLNVQPNYNTP NIKRFATQEQIKVMQEETSKEVLDHSLEIAKDSIAPIRTLLRTGDPGREICKEAQESV VDSIVMGYRGLGAVKRAILGSVATHVLHETSCPVTIVP" gene 962876..963724 /locus_tag="Dhaf_0871" /db_xref="GeneID:7257840" CDS 962876..963724 /locus_tag="Dhaf_0871" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mxa:MXAN_3454 2-oxo acid dehydrogenase acyltransferase catalytic domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457370.1" /db_xref="GI:219666935" /db_xref="GeneID:7257840" /translation="MRRSDGRLLKSLSPFVRIIPHIMTKRNDAQNFYKQVVAVDKIDQ YIKEKKDQGIRLNYLHLFIAVYVRVLAQRPQLNRFIMNNKIYTRYDIRISMAIKRLLK DDGEETTVKFLFSGLESIEEIVKIVDQTIEEGCAAGAANEVDTIAQRIMALPNSQVKL LVGTLKWMDRHNLLPKKIIEASPFHTSLFFTYLKSINLDFIYHHLYDFGTTGIFVALG KSKKLPVVEEDQVVVKKCCEIGYVLDERICDGLYYSNSFKLVKKYLANPYLLDERLEK VEEDVN" gene 963820..964026 /locus_tag="Dhaf_0872" /db_xref="GeneID:7257841" CDS 963820..964026 /locus_tag="Dhaf_0872" /inference="protein motif:PFAM:PF03459" /note="PFAM: TOBE domain protein; KEGG: aoe:Clos_1010 TOBE domain-containing protein" /codon_start=1 /transl_table=11 /product="TOBE domain protein" /protein_id="YP_002457371.1" /db_xref="GI:219666936" /db_xref="InterPro:IPR004606" /db_xref="InterPro:IPR005116" /db_xref="GeneID:7257841" /translation="MKLSARNQLKGKITEVKKGPVSTEVVLDINGQSITASITSGSAE SLGLKVGDDAIAVIKASSVMIGLE" gene 964310..965146 /locus_tag="Dhaf_0873" /db_xref="GeneID:7257842" CDS 964310..965146 /locus_tag="Dhaf_0873" /EC_number="3.6.1.27" /inference="protein motif:TFAM:TIGR00753" /note="BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="YP_002457372.1" /db_xref="GI:219666937" /db_xref="InterPro:IPR003824" /db_xref="GeneID:7257842" /translation="MALVEIFKAILLGIVEGITEWLPISSTGHMILVDEFIKLNMSAA FMEMFFVVIQLGAILAVVLLYWKKLNPFTFDRGVSVKQETIEMWFKIIVSCIPAGVIG LLWDDVFNALFYNYQTVAVMLIIFGILFIVIENYNKGKRPRVNHLSQITYTTAFMIGI FQLIAAIFPGTSRSGATIVGGLLLGVSRTVAAEFTFFLAIPVMFGASALKLLKFGFNF TGPELMILLIGMVVAFIVSVISIKFLMGYIKKNDFKIFGWYRIILGVIVLLYFSARTI IG" gene 965229..965786 /locus_tag="Dhaf_0874" /db_xref="GeneID:7257843" CDS 965229..965786 /locus_tag="Dhaf_0874" /inference="protein motif:PFAM:PF04011" /note="PFAM: LemA family protein; KEGG: tpd:Teth39_1919 LemA family protein" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_002457373.1" /db_xref="GI:219666938" /db_xref="InterPro:IPR007156" /db_xref="GeneID:7257843" /translation="MKKWLIPVGIIIILAMILGSGYNNLVTLSETVDSSWSQVENQLQ RRADLIPNLVNTVKGYAEHESEVFTDVADARSRLIGAGSVGEAAEADAALSSALSRLL AISESYPQLKADANFRALQDELAGTENRIATARMDYNNEVQSYNTKIKHFPTNLYAGI LGFDEREYFKADASAYEAPTVDFSK" sig_peptide 965229..965306 /locus_tag="Dhaf_0874" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.647) with cleavage site probability 0.379 at residue 26" gene 965822..966616 /locus_tag="Dhaf_0875" /db_xref="GeneID:7257844" CDS 965822..966616 /locus_tag="Dhaf_0875" /inference="protein motif:PFAM:PF04536" /note="PFAM: protein of unknown function DUF477; KEGG: trq:TRQ2_1830 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF477" /protein_id="YP_002457374.1" /db_xref="GI:219666939" /db_xref="InterPro:IPR007621" /db_xref="GeneID:7257844" /translation="MKGMKPMKRKLLLAGLVLFFLTLAFPLQATTPSIPQPTRDFFVL DEANVLDSNTERIIVQNSAELEKRTKAQIVVVTVNDLKGYGPEEYALSILREWGIGDK KLNNGLLILVSPTEGEARIEVGYGLEGALPDAKTGQIQDEYMIPYFQEGDYNQGILNG YRAFVQEVAKEYQVVMNIDSPKALSTSSDYGDGTDTFASLPLGVKILAFFGIVFLFYI DHRYFNGFIFGMIIGMLMRGGRGGGGGGGFGGGGGSGGGGGSTRRW" sig_peptide 965822..965911 /locus_tag="Dhaf_0875" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 30" misc_binding 966679..966785 /note="TPP riboswitch (THI element) as predicted by Rfam (RF00059), score 62.64" /bound_moiety="thiamin/thiaminpyrophosphate" gene 966896..967192 /locus_tag="Dhaf_0876" /db_xref="GeneID:7257845" CDS 966896..967192 /locus_tag="Dhaf_0876" /inference="protein motif:PFAM:PF01910" /note="PFAM: protein of unknown function DUF77; KEGG: cpy:Cphy_1150 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF77" /protein_id="YP_002457375.1" /db_xref="GI:219666940" /db_xref="InterPro:IPR002767" /db_xref="GeneID:7257845" /translation="MINASVAIQVLPAVEGQEVIRVVDKVIEYLKSSGLNVYVGPFET TVEGEYDQLMEMVKHCQLICIEEGAPSVMSYVKISYKPEGGIWTIDEKVTKHHQ" gene 967161..967943 /locus_tag="Dhaf_0877" /db_xref="GeneID:7257846" CDS 967161..967943 /locus_tag="Dhaf_0877" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1151 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457376.1" /db_xref="GI:219666941" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7257846" /translation="MMKRLQSITNKLYPTAVLLILLIFWYLVTLLEMVPKFMLPSPGD VIRALAGSFPELMKHAQITLTEAFIGLALSILLAFWIALLMDRFDALYKAFHPILVIT QTIPTVAIAPLLVLWLGYDMAPKITLVVLTCFFPMTIALLGGFKSSDQDAMNLMRAMG AKKWQIYRYIKLPNALPGFFSGLRISVSYSIVGAVIAEWLGGNSGLGVYMTRVRKSYS FDKMFAVIFLIIILSLVLMKCVELLERKAMPWAQTGEQQNEG" gene 967977..968996 /locus_tag="Dhaf_0878" /db_xref="GeneID:7257847" CDS 967977..968996 /locus_tag="Dhaf_0878" /inference="protein motif:PFAM:PF09084" /note="PFAM: NMT1/THI5 like domain protein; KEGG: cpy:Cphy_1152 NMT1/THI5-like domain-containing protein" /codon_start=1 /transl_table=11 /product="NMT1/THI5 like domain protein" /protein_id="YP_002457377.1" /db_xref="GI:219666942" /db_xref="InterPro:IPR015168" /db_xref="GeneID:7257847" /translation="MKKRCIAILMSVFVVLGLAGCGVQNNTINTGNEQQGAQENKKVT FVLDWTPNTNHTGVYVAKELGYFQESGLEVDIVQPPEGGALPLVAAGKAEFCVTFQEE LAAALTSDSPLDMVAVGTILQHNTSGIISLKEDNITRPKDMENKVYATWDSPVEKAII KQVIEKDGGKYEAIRMIPNTVTDVISALKTDVDAIWVYYGWDGVATEVKGLDTNYFAF KDIDPVLDFYTPVIAASPLYLEKNQDTAKSFLAAVAKGYEYAIAHPEEAAEILVKHAP ELDQELIKASQKYLAREYKAEAERWGFIDQARWDNFYAWMADNQLISKRIEPGQGFTN AYLPQ" sig_peptide 967977..968054 /locus_tag="Dhaf_0878" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.416 at residue 26" gene 968977..969741 /locus_tag="Dhaf_0879" /db_xref="GeneID:7257848" CDS 968977..969741 /locus_tag="Dhaf_0879" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_1153 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457378.1" /db_xref="GI:219666943" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257848" /translation="MPTYRSKMDKIKLETQNISKGFAGELTIKDINIRLGEKELVSLL GVSGIGKSTLFNVIAGVLTPDSGRVLLNAQDITGQAGKVSYMQQKDLMQPHLTVLDNV ALPLFIRGVKKSQAREEAFSHFKEFGLEGAEKKYPAQLSGGMRQRAALLRTYMFSRDV ALFDEPFSALDAITKSSMHRWYLDLMGRIDMSALFITHDIDEAILLSDRVYIMTGPPG RLAHEIIIDTLRPRGEEFRISDAFMGYKRQIIKLLS" gene 969872..970531 /locus_tag="Dhaf_0880" /db_xref="GeneID:7257849" CDS 969872..970531 /locus_tag="Dhaf_0880" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rsa:RSal33209_2791 Crp family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002457379.1" /db_xref="GI:219666944" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7257849" /translation="MSNPKTIPDLDRFAFFHGLPPAFLQTWKRNFSRMSFAKRQRLVF PSSCSDVIFFVLSGKVKIAYTSEDGKEFAIAILSAGEVYSEHSLALATAIEKTEVLYV SMADFKAMMDECPELARHLVRLLGKILRLTNDLIVDLAFRETSSRLARVFRRTMQGKN DNAIYLTHEELASLSGSTRQTINEILRHWEQQGIVALHRGYVVLLLPERLWEKISHEY S" gene 970731..971231 /locus_tag="Dhaf_0881" /db_xref="GeneID:7257850" CDS 970731..971231 /locus_tag="Dhaf_0881" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0735 iron-sulfur cluster-binding protein CooF" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457380.1" /db_xref="GI:219666945" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257850" /translation="MKQLLVRTEHCLGCKSCELACAVAHSQSKQLFAAIFESERPLKR VFVETDGEVIMPLQCRQCSDTPCVYGCMAGAMRIDSTTGLVQVKPEKCVGCWMCVMVC PFGVITEGPDHQVVKCDRCRELAYEPACVSACPTKALQFVEVDGYAREIRKSWMNHLK EVGNHA" gene 971224..973131 /locus_tag="Dhaf_0882" /db_xref="GeneID:7257851" CDS 971224..973131 /locus_tag="Dhaf_0882" /EC_number="1.2.99.2" /inference="protein motif:TFAM:TIGR01702" /note="KEGG: chy:CHY_0736 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase, catalytic subunit" /protein_id="YP_002457381.1" /db_xref="GI:219666946" /db_xref="InterPro:IPR004137" /db_xref="InterPro:IPR010047" /db_xref="GeneID:7257851" /translation="MLNVRSIDPAAQDLIKKAHKDGIETVWDRYDKQQPQCGFGSLGV CCRHCIQGPCRIDPFGQGPDKGICGATADVIVARNLLRQVAAGAAAHVDHAYDAVEAL ELAAQGKIDYPIADAGKLKAVASGLGIDSEGKEPDALALEVVRVAYGDMGNHHNRPMK WVSAHAPKQRLEVWESLGIIPRNPDREIREAMHQTTMGMDADPVNLLLATAKQGLVDG YAGLKLATDMQDILFGTPAPVVTEANLGVLKEDYVNLIVHGHVPLLSEKIVQWAKTLS PEAEAVGAKGVQVAGICCTGNEVLMRQGVPLATNYLAQELAIVTGAVDAMVVDVQCIM PSLSQISSCYHTELITTMPIVKIPGATHVPFALEKADEAAQEIVRKAIGAYARRDPNK VHIPDYRAKIIAGFSVEAIAGALGKLDPVQPLKPLADNIVNGNIVGVVATVGCNNVKV TQDIFHVEMVKELLKNNVLVVATGCSAHALAKAGMMNSEGTERYAGNTLKAVLRAIGE AAGLGAPLPPVLHMGSCVDNSRIGDLVTALANYLGVDSAALPVAASAPEPQHEKALSI GTWAVAMGITTHLGVIPPVLGSKQVTELLTVGLTEVIGGKFYVETEPQKAALGLIEDI RKKRQALGLDQ" gene 973152..974420 /locus_tag="Dhaf_0883" /db_xref="GeneID:7257852" CDS 973152..974420 /locus_tag="Dhaf_0883" /inference="protein motif:PFAM:PF00070" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mta:Moth_0724 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002457382.1" /db_xref="GI:219666947" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257852" /translation="MNYIIIGNSAAGLFAAEGLRKVDSQGKITVLTADHYPPYSRCLT TYYLAGDIREEQLFLRTTEELARLNLNTHYRVRVTGLDPEGQRVSTASGEVFDYDRCL IATGASAVSLDIAGAALPEVFTLRHLENAKAIQKFIKKGRKAVIIGGGLVSLKSAYAL RKQGMEVHVIVSSGYILSQMLNSSAAERLEEHLKDHGIHISLNSDVAAIKGKEHVEAV ELKCGRIIDTNLVIIGKGVQPNVEPFLNSGLKINHGILVNEYLETNLPHVYAAGDVAE TWDFLRECPRINAVWPNATEQGRVAALNMAGRKTIYKGSMGMNSVDFFGLRIISGGVI TPLAHKKDIENALPWKVTEGQESWSKPLAKASTYQSLIWKGNYLKGYVLIGYPERAGL LTAMIRTQEPLAPEVQRNIEAGNRKIVKLK" gene 974569..975555 /locus_tag="Dhaf_0884" /db_xref="GeneID:7257853" CDS 974569..975555 /locus_tag="Dhaf_0884" /inference="protein motif:PFAM:PF01370" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sat:SYN_01130 dTDP-glucose 4,6-dehydratase" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_002457383.1" /db_xref="GI:219666948" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002225" /db_xref="InterPro:IPR003869" /db_xref="InterPro:IPR005913" /db_xref="InterPro:IPR013120" /db_xref="GeneID:7257853" /translation="MWKGKKVLVTGAGGFIGSHLTEALVKAGADVRVFIRYNSRDGRG NLEDLEPSLLNQIEIIAGDLRDADVIDRAVKGNDVVFHLAALVGIPYSYKNPREVVET NIFGTFNILIAGRDHEVSRVVSTSTSEVYGSAQYVPIDENHPLQGQSPYSASKIGADK LAESFYASYNLPVATIRPFNCYGPRQSARAIIPTLITQALASSEIKLGNLEAKRDFTF VSDTVAGFMAAALSPKTVGKVINVGSGQEISIGELAQIILETTQSSAKLVIDQERVRP SKSEVNRLLADSRLAKEIMDWEPQVSLTEGILKTMAWIEKNLDRFQIGKYQI" sig_peptide 974569..974640 /locus_tag="Dhaf_0884" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.609) with cleavage site probability 0.547 at residue 24" gene 975575..976264 /locus_tag="Dhaf_0885" /db_xref="GeneID:7257854" CDS 975575..976264 /locus_tag="Dhaf_0885" /inference="protein motif:PFAM:PF00483" /note="PFAM: Nucleotidyl transferase; KEGG: sat:SYN_01129 mannose-1-phosphate guanyltransferase" /codon_start=1 /transl_table=11 /product="Nucleotidyl transferase" /protein_id="YP_002457384.1" /db_xref="GI:219666949" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005836" /db_xref="GeneID:7257854" /translation="MQTIILAGGRGSRLDPYSRILPKPLFPIGDKPIAAILIEQLKKA GTDEVIMCLGYLSDLLKTYFQDGSEFGLTIRYSVESEPLGTAGPLKGVEGLQDNFVVV NGDELTTLDFRALYEHHRAVQADMTVAVQKKTTHSSFGVLEIQDGQVIAYAEKPTLNY WASMGIYVINKDILSYIPDNEKYDMPNLVQCLIQNGAKVSSYESQDLWFDIGTLGDLE KAKEQLEKFKF" gene 976421..976771 /locus_tag="Dhaf_0886" /db_xref="GeneID:7257855" CDS 976421..976771 /locus_tag="Dhaf_0886" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457385.1" /db_xref="GI:219666950" /db_xref="GeneID:7257855" /translation="MAFLTTGLIDNTPVFGVRPSSSLSVLVTNNVDTLESVLLRGYYL SGNTKILYVEELFNIGPAEVVLRNYFADFDGIEFQFIVSSQGVNATLWGKDAEGNLQT AHRVVAQELDELDI" gene 976793..978493 /locus_tag="Dhaf_0887" /db_xref="GeneID:7257856" CDS 976793..978493 /locus_tag="Dhaf_0887" /inference="protein motif:PFAM:PF01391" /note="PFAM: Collagen triple helix repeat; KEGG: cdf:CD3349 putative exosporium glycoprotein" /codon_start=1 /transl_table=11 /product="Collagen triple helix repeat protein" /protein_id="YP_002457386.1" /db_xref="GI:219666951" /db_xref="InterPro:IPR008160" /db_xref="GeneID:7257856" /translation="MAELTTGLIDNFPVNGVRPSVSVAIRITNDGDSVEMVEIIGYYL NGLFKEVYVLEELSIIPGEVVLREYFADLDAFEFVFSTSSETVVISVWGKDAEGNLVD AHRVLPAELDSLEPVIGPTGATGATGATGDTGATGATGATGATGDTGATGATGATGAT GDTGATGATGATGATGDTGATGATGATGATGDTGATGATGATGATGATGATGATGATG ATGATGATGATGATGDTGATGATGATGDTGATGATGATGATGATGATGDTGATGATGA TGDTGATGVTGDTGATGATGATGDTGATGATGATGDTGATGATGATGDTGATGATGAT GDTGATGATGATGDTGATGATGATGDTGDTGATGATGATGDTGATGATGATGATGATG ETGATGATGGGAVIPFSSGDPLAVTTLAGGLVGLPGLIGFGSSAQALTVLGATIDLSG QTNYAFSMPRDGVITSLAAYLSATAALALLAPLTYTVQLYSSPSPDDVFSPVPGAVVD ITITGPIAVGDTFNGIATGLSIPVTGQTRLLLVVSATGGGLVAGGTVAGYVSAGLGIE" gene 978647..979738 /locus_tag="Dhaf_0888" /db_xref="GeneID:7257857" CDS 978647..979738 /locus_tag="Dhaf_0888" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; Tetratricopeptide TPR_3; SMART: Tetratricopeptide domain protein; KEGG: ckl:CKL_2426 predicted glycosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002457387.1" /db_xref="GI:219666952" /db_xref="InterPro:IPR001173" /db_xref="InterPro:IPR011716" /db_xref="InterPro:IPR013026" /db_xref="GeneID:7257857" /translation="MLENPISISLCMIVRNEEKTIARCLDSVCDIADEIIIVDTGSTD RTKEIVARYTDKIFDFAWIDDFAAARNYAFSLGTKEYLLWLDADDVILESDRLKFHNL KKNLNPSIDVVNMHYLLAFDSSENPTFTLRRNRLVRRGKNFRWKGAVHEYLEVSGNIM NSDIAIAHKSEEHDSERNLRIYEKRLEQGEEFSPRDLYYFANELYDHKQYEKAVEYYE KFLNTEKGWVEDNISACGKLADIYKLLGDSANAQAYLYKSFDYDTPRAEFCCRIGFNH LNAGKYQQAIFWYKLASELEKPTNSWGPKSEACWTYLPHLQLCVCYDRLGMHELAYKH NEIARDYRPDNPQILHNKKYLEGVLGLKG" gene complement(979888..980871) /locus_tag="Dhaf_0889" /db_xref="GeneID:7257858" CDS complement(979888..980871) /locus_tag="Dhaf_0889" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: sth:STH1366 hypothetical protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_002457388.1" /db_xref="GI:219666953" /db_xref="InterPro:IPR001296" /db_xref="GeneID:7257858" /translation="MKIILPVMSLEMGGGARFLYHLANALTDKGHDVEVIMPSKGAQV WPLRAKLTRVPELSPANIPYGDFILPNFYTTVGAAWASQKGKVVRLSLGYEPLWVPDT ESAKQSYLIDAPILSISQWHRQLILQETGRNSTVISCGVDHHLFRPCPKRSSQTGRKN IFYILRNPALGYIWKGGEDFFNALSLLKGLDFEVTVTLTEATQLTGSFPCRTVYAASD QEMAALYGEADLFVYNSYFEAFGLPPLEAMACGTAVITTDCGGSRDYAHNGENCLVVP PSDINQLQQALHLLLTQDGERQRLASAGFAFAQAWTWQRTADQVEAFLLSL" gene 981058..981636 /locus_tag="Dhaf_0890" /db_xref="GeneID:7257859" CDS 981058..981636 /locus_tag="Dhaf_0890" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: rbo:A1I_04630 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457389.1" /db_xref="GI:219666954" /db_xref="GeneID:7257859" /translation="MSVKIVHHKNFLGMIKELMKDAQSVLDIGCGVGATLKDFPCPIK IGVDAHGPYLEKARLATSFLPIKYEAQRIGEIFLAKSVDCVSMIDVIEHMEKGVGYEV LAQAERIAVKRVIVFTPRGFFKQKAEDHYGLGGESFQEHRSGWEIEDFTQRGYQVIVF NQFHDQSNLAFVESYGKDAKPMDALLAWKELR" gene complement(981646..982644) /locus_tag="Dhaf_0891" /db_xref="GeneID:7257860" CDS complement(981646..982644) /locus_tag="Dhaf_0891" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: sth:STH1367 hypothetical protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_002457390.1" /db_xref="GI:219666955" /db_xref="InterPro:IPR001296" /db_xref="GeneID:7257860" /translation="MKLVIPVLSLETGGTRFIYQIANEMAAKGHHVEIVLPEHAVVAW PLRTQITRVRELTPATIPAGDFILPNFWPTVFPAWGAQKGRVVRLSLGFEPLWVKEKE NALATYHIDAPILSISQWHRQIIRQETGRDSTIIPGGVDLSLFHPHPKKSLMANTGPT IAYILRSKEHGYTWKGSDDFWEAIRITAQSFPHFTLQIVAPEGAAYPSPVPYQPIVAT TDAELALFYAQADIFVSTSYFEAFAMPPLEAMACGTAVVTTDNGGNRDYAKNGENCLV VPPSDIQQLSQSLLHLLTQAQERQRLAQAGQHTAQAWTWRHSADRLEQFLFQLSRN" gene 982768..983805 /locus_tag="Dhaf_0892" /db_xref="GeneID:7257861" CDS 982768..983805 /locus_tag="Dhaf_0892" /inference="protein motif:PFAM:PF03721" /note="PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; KEGG: sth:STH1368 UDP-N-acetyl-D-mannosamine dehydrogenase" /codon_start=1 /transl_table=11 /product="UDP-glucose/GDP-mannose dehydrogenase" /protein_id="YP_002457391.1" /db_xref="GI:219666956" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR014026" /db_xref="GeneID:7257861" /translation="MKIAVVGLGNIGFNLFSYINKKYPNSVVGVDIDAGRVNDLRSQG YRVTTDYRALTGIDIWLLAPSTGDQGENLFAALGEMIICPGALISIESTLPPGTMELV RKYLEGKGYRCGQDVYLIHVPHRVMFGVDETVCDTPRVMGAFTQACRDKGRQFYEPLV PQLVEVEDVRIAELSKVVENVKRYVDVAFAQELYQYCKDQGMDFAELRKAVNSKSNVE LLGTDWGIGGECLPKDMRFLRKVCPSPLLEGAAIADQEYRDRILQQVGTHQNVLIKGL SYKAGVKDLKHSRGVDLVRALEEAGNTVWVVDPLFTPEELEAAGFKTVEKFDEADLQG WIVLEREKALK" gene 983827..984747 /locus_tag="Dhaf_0893" /db_xref="GeneID:7257862" CDS 983827..984747 /locus_tag="Dhaf_0893" /inference="protein motif:PFAM:PF01370" /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sth:STH1369 UDP-glucose 4-epimerase" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_002457392.1" /db_xref="GI:219666957" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002225" /db_xref="InterPro:IPR005913" /db_xref="InterPro:IPR013120" /db_xref="GeneID:7257862" /translation="MAKVLVTGSKGTLGTRLVEELRKRGHEVWEVDLQHDAEEKYFRA DIAKYRQLERVFEQDYDYVYHLAAEFGRINGEHYYDTLWETNVIGTRNILEWQLKKGF KLIFTSSSEIYGEAQEPLLTEDLPQQKTIIQHNDYALTKWANEVQIINFEKRYETPIV RLRLFNAYGPGEYYHPYRSVVCLFVYRALKGIPYDVYEGYHRVFMYVDNLIPTIANVG NNFKPGEVYNIGGTEYRSVRELSDLVLKYTQGDPGLIRYLPEDKHNTVSKRPDIQKAV RDLGHNPKMLLEEGIPITVEWMKKIYGEGR" gene 984748..985455 /locus_tag="Dhaf_0894" /db_xref="GeneID:7257863" CDS 984748..985455 /locus_tag="Dhaf_0894" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: sth:STH1362 glycosyl transferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002457393.1" /db_xref="GI:219666958" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7257863" /translation="MSMPKVSVVIPTYNHARYVTWAVESVLRQKYPSLEIIVIDDGST DDTAQRLQPYQSRINYIYKSNGGTPNALNHGLQRATGEYICWLSADDMFLKGKLEKQV QLMEANPQVGFCYTSFIVIDENGLKKYAADSEFYPARQELVVNLLRGCFINGSSVMMR RTALERVGYFDEGLPQAHDYELWFRFLRHFPAGYIREPLIAYRWHGENMSLHPDNECI RIVQQRARELFPEWLGG" gene 985459..986178 /locus_tag="Dhaf_0895" /db_xref="GeneID:7257864" CDS 985459..986178 /locus_tag="Dhaf_0895" /inference="protein motif:TFAM:TIGR02276" /note="TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: gur:Gura_3003 YVTN beta-propeller repeat-containing protein" /codon_start=1 /transl_table=11 /product="40-residue YVTN family beta-propeller repeat protein" /protein_id="YP_002457394.1" /db_xref="GI:219666959" /db_xref="InterPro:IPR011964" /db_xref="GeneID:7257864" /translation="MAILTTGVIENPTVAGQKQTATLSVRYRNTGHLPAVIQIWGYYL QGSNKVEYVVDSITLASGVVKDTQHYAQFDALEFRFMITSQDVKLKVWGKNVSGTMTA IYPVRPVDPISSGQIHEQGKKATENQLYAIHPERNSVDVLDKSTRAPIMTIPVGINPQ GMGINPLTGRVYVSNHGSNTVTVIDGSTNTVIATVLVGASPAEIRVDSKSNRIYVTNQ GSGTVSVINGTTHTVMSTLKK" gene 986508..987578 /locus_tag="Dhaf_0896" /db_xref="GeneID:7257865" CDS 986508..987578 /locus_tag="Dhaf_0896" /inference="similar to AA sequence:KEGG:CTC01036" /note="KEGG: ctc:CTC01036 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457395.1" /db_xref="GI:219666960" /db_xref="GeneID:7257865" /translation="MKKRTLMMGVFSVLLSLIFLGGCGTNQNNPPNEPPNNSEQPAQE DMLANCLAYQENTKYVYEGQGNEYASFTTYVDYFKGDKVQLRTNNGGTETVRVLGLNA GQMIQLLAQGETYYREDLTQSSKLNSNGEVLLKEPLTKGTSWTLADNRKRTITNVDMD LSTPAGAYKVIEVTTEGKDNTIMDYYAPGVGLVKTVYKGSDGYEVTSTLSKLEKNTPL VQQVKIYYPNIDDGKIHTTNIPLSFKTNDITKQIFEDEFKKQAANHGKLIGENVKIKS LYLNQDGRVYVDFTKNFVTEMNAGAGYEGMILQSIVNTLGNYYGASEIYLTMEGEPYA SGHIEMKKGEFFKVNMDNVVEG" sig_peptide 986508..986594 /locus_tag="Dhaf_0896" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.491 at residue 29" gene 987754..988908 /locus_tag="Dhaf_0897" /db_xref="GeneID:7257866" CDS 987754..988908 /locus_tag="Dhaf_0897" /inference="protein motif:PFAM:PF03595" /note="PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: mja:MJ0576 malic acid transport protein" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter/malic acid transport protein" /protein_id="YP_002457396.1" /db_xref="GI:219666961" /db_xref="InterPro:IPR004695" /db_xref="GeneID:7257866" /translation="MLERHPIKYLAPAWFAVIMGTGGLANILFLWQDSFPLGHLFSII LAALVGLLYFCVLVPWVLRWFKYFPYAYRDLNHPLAGNFFVTMPVGTAILGTNIYLIW SKYLSETLTYSLMFTFWIIAIIGVTFFTFYTTFRMMRAEETPKPEMVNFSWIMAPIAN MAVSLIGNPVLELTMKLHPSWSVSVLLINTALFGIGFFLFIFMSAIVFVRLANHPLPP AETIPSFGIFLSAVGLAVSAIIDASKNAQELGLLASTDLANLIAAVIWGFGIWIVGII AIISVYQLRKGGGIPFSMGWWAYIFPLAAYTICSQKIAVVFITPLASGYTAFLTVLLA LLWVYTFANTVRGAVSGKFFVGTPIQENSQREKCPSACKTDYGQSAFPLK" gene complement(989036..989917) /locus_tag="Dhaf_0898" /db_xref="GeneID:7257867" CDS complement(989036..989917) /locus_tag="Dhaf_0898" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpu:BPUM_3485 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457397.1" /db_xref="GI:219666962" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257867" /translation="MEIRHLEYFIEVARHKSFSVAAEVTHTSQPSISKAIKDLETELG KALFYRSTKYVKLTDAGELVLEQAQQIVAAFRNINTQLEGLAQLQTGKIHIGLPPITA VTTFSHMLGAFKSEYPRIQVQLFEYGPKKIEASLEDGLLDFGIFTPEDPELFEWIWFE QDPLSVIMHPNHPLALRECIDYKDFAGEQLILYNSDYKLHDIIIAGCKKAGINPEIAF ATSQRELMTQMVAAKLGLALLPTKICQVLNSETIIYRPFSDSNLCLQLALVWKKGRYL PHAAHELLTFLKEKHFL" gene 990205..990852 /locus_tag="Dhaf_0899" /db_xref="GeneID:7257868" CDS 990205..990852 /locus_tag="Dhaf_0899" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: afu:AF0347 C4-dicarboxylate transporter (mae1)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457398.1" /db_xref="GI:219666963" /db_xref="GeneID:7257868" /translation="MNKESRRTWFLVPMLYMSVQLIGNACLTRAIVLNLKWIWLLLGI NILLFIVGLLWFHLISVLVVIRIAQRSLTFTEINIFFVFILGAVGVTICTILDLAQSL FFMGLLDSAQPLKLLTCFFWGFGVWIVGFTFIRWCYQNQKKMPIGAEWGIYIFSFQVY TVACHKMAAEFFSPLTSGVSSLVTILLIVLWCCFLGEIGQRYFLHKLFCDKTKEK" gene complement(990924..991835) /locus_tag="Dhaf_0900" /db_xref="GeneID:7257869" CDS complement(990924..991835) /locus_tag="Dhaf_0900" /inference="protein motif:PFAM:PF01261" /note="PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_0350 xylose isomerase domain-containing protein" /codon_start=1 /transl_table=11 /product="Xylose isomerase domain protein TIM barrel" /protein_id="YP_002457399.1" /db_xref="GI:219666964" /db_xref="InterPro:IPR012307" /db_xref="GeneID:7257869" /translation="MNESFRKYMKVGLVHFMAYPSTSKGEGPILETLRRIAMDEYFEV VEMTWIKDPAVRKKARQIIETSHMEFSYAGMPRLLPTKQNINSLNEEERLQALANVKE GIDEAYEMGAKDFAFLSGKYEEPRKEEAYQALIRSTKEICAYAKSKGDMKIAIEVFDY DVDKCSLIGPVALTQRYAKEIRREYDNFGLMVDLSHLPQLRETPAESLIPVKDYIIHA HMGNTLVKDKLSPVYGDEHPRFGFPGSENDVAELVEYLRVLLDIGFLNKENRPIVSLE VKPYEDEDPELVIANAKRVLNLAWDQV" gene 992173..993069 /locus_tag="Dhaf_0901" /db_xref="GeneID:7257870" CDS 992173..993069 /locus_tag="Dhaf_0901" /EC_number="4.1.3.6" /inference="protein motif:PRIAM:4.1.3.6" /note="PFAM: HpcH/HpaI aldolase; KEGG: mta:Moth_0400 citrate lyase" /codon_start=1 /transl_table=11 /product="Citrate (pro-3S)-lyase" /protein_id="YP_002457400.1" /db_xref="GI:219666965" /db_xref="InterPro:IPR005000" /db_xref="GeneID:7257870" /translation="MAIMRSVLFVAGNDKEALDEALTYGADALILDLEDLVPPLEKSR ARRMVRVNIKHAGSQGAEVWVRVNAWETNMTDDDLEAAVCEGLTGINLTKVAGAGDVQ RLAWRLEELERKNGLAVGSIKICLLIETAIGVINAYESCAASPRVAAAIFGAVDYTRD MQVKLTPEAKEQQFARGYVAVAARAAGVIALDAPFLNYTDKEGYVHNIAEGRQLGYKG RMIVHPSLVEAANRLYAPDPEDVQWAGEIKKVFEEEAIAKGKAAIVYKDKLVDTPVYS NALDILANQAEIDAKLGISIQE" gene 993104..994339 /locus_tag="Dhaf_0902" /db_xref="GeneID:7257871" CDS 993104..994339 /locus_tag="Dhaf_0902" /EC_number="1.1.1.40" /inference="protein motif:PRIAM:1.1.1.40" /note="PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: ckl:CKL_2408 MaeB" /codon_start=1 /transl_table=11 /product="Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))" /protein_id="YP_002457401.1" /db_xref="GI:219666966" /db_xref="InterPro:IPR012301" /db_xref="InterPro:IPR012302" /db_xref="InterPro:IPR015884" /db_xref="GeneID:7257871" /translation="MSLRENALKLHADHRGKIKIALKVPCRDYNDLSLAYSPGVAEPC MEIAQDPELVNTYTNRANCVAVVSNGTAVLGLGDIGARAAMPVMEGKSLLFKNFAGVD SFPICLDTKNIDKIVEVVKLLEPTFGGINLEDIKAPECFEIEEKLKAVYDGPVFHDDQ HGTAVVTLAAMFNALKIVNKELKDVKIVTSGAGAAGMAIVKLLMDCGLQNVIMCDTKG TIYKGRAEGMNKYKEEIALRTNPAMVKGSLGEALKGADVFIGISVGNTVTQEMIRTMA KDAIVFAQANPVPEIMPEEAKEAGAAVIGTGRSDYPNQINNILSFPGIFRGTFDVEAR EINGPMKIAAAEAIASIVSPEELSAEYIIPKAFDKRVAPAVAAAVAKAAMESGVAKRK VDPEQVALNLTSLLAQEGK" gene complement(994753..996120) /locus_tag="Dhaf_0903" /db_xref="GeneID:7257872" CDS complement(994753..996120) /locus_tag="Dhaf_0903" /EC_number="2.3.3.1" /inference="protein motif:PRIAM:2.3.3.1" /note="catalyzes the formation of citrate from acetyl-CoA and oxaloacetate" /codon_start=1 /transl_table=11 /product="citrate synthase" /protein_id="YP_002457402.1" /db_xref="GI:219666967" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR002020" /db_xref="GeneID:7257872" /translation="MENTDLKNFEESMLDGLSELTIKKGPINPELYHKYEVKRGLRDL DGRGVLVGLTEIGEVHSYIIDEGEMVPVPGRLIYRGYDITDLARGFMEDNRFGFEETA YLLLFGRLPNRQELIDFHNLLDIYQKLPDNFARDMILNVPSKDIMNGMARSVLGFYCY DTNPDDTSIRNVLKQCIRLIAAFPALAVYCYQAYTHYHGNKSLVIHSPQPELSLAENI LYMLRPNHKYTELEARLLDLALVLHAEHGGGNNSSFVTHVVTSTGTDTYSAVAAALGS LRGPKHGGANHKVIQMFQDIKEKISDWQDEDELSAYLDKILLKDAFDRSGLIYGIGHA VYSISDPRAVVLKHYASKLAAEKGLDNEFNLYAKVEELAPKVIAKHTKIYKGVSANVD FYSGFVYQMLNLPLEMFTPIFALSRIAGWSAHRIEEIVNGGKIIRPAYKSVVPRQKYV PLNKR" gene 996473..997876 /locus_tag="Dhaf_0904" /db_xref="GeneID:7257873" CDS 996473..997876 /locus_tag="Dhaf_0904" /inference="protein motif:PFAM:PF06808" /note="PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: nth:Nther_2189 hypothetical protein" /codon_start=1 /transl_table=11 /product="TRAP C4-dicarboxylate transport system permease DctM subunit" /protein_id="YP_002457403.1" /db_xref="GI:219666968" /db_xref="InterPro:IPR001991" /db_xref="InterPro:IPR004680" /db_xref="InterPro:IPR010656" /db_xref="GeneID:7257873" /translation="MELKNITGKALTRIRSLLTFGLAVTYLGNLLMRSQALEDLIIVL MIIVILLGFTAVTGSSKIIGYLSFAVSIALLLYFDAPLSVWRQALQDNLFLVVMFIMV PLMGIPIQHGGYTPALQSLFERHVNSNSRYYLLVSFLSAFIGVLVSLAVVPLVYQVCR NSSRSSDHKLLSSAISRGFSTCIIWAPTTAAVALVVQLTGSTWLAFFPLAISCGIIVG AVGFVMTVFEEKQKKKQERSCPVEDVPLGGDFDLRKLIELGAFSIVLIIGIGVISWVS GISAIIVVSVLALIYPMIWLILIKRLPVFFREFKGDYFHNRLPSIKNEMILFVGAGLL ANSINYSHLGDYVPQILSYLVGHNGLLLTLVIIGSTLCLAALGVHPIATVTIFGGTIK AAAYGVSPTYLALVLAISWAMGTSISPSAANVIAVSSIVGESPLQVGIGWNGPYVILA TLVLVVFLTGMRLLGVL" gene complement(997975..998178) /locus_tag="Dhaf_0905" /db_xref="GeneID:7257874" CDS complement(997975..998178) /locus_tag="Dhaf_0905" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457404.1" /db_xref="GI:219666969" /db_xref="GeneID:7257874" /translation="MTISREKLHDLIDQIPDDRLSYLDDVLDWILRSELHAVQRVKTD MSTPAQERKTAATLDDIFRDQDV" gene complement(998258..999628) /locus_tag="Dhaf_0906" /db_xref="GeneID:7257875" CDS complement(998258..999628) /locus_tag="Dhaf_0906" /inference="protein motif:PFAM:PF02310" /note="PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU0204 radical SAM domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002457405.1" /db_xref="GI:219666970" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7257875" /translation="MKVLLIQPPSSTAFMDKVYMYEPLGLEYLGAGLQEDGHEVLLLD ARLEPDFEKAFHSFQPDIVGITGYTNHLNIVKAIAARFKEINLDVFIIVGGHHATVKP ADYNDQAIDLIVIGEGVFTLRQILKHKESRLPFEDIPGLAIPGAVMKFTAERPYTPLD DLPFPDRSLTARYRSHYFSDWMKPIASIRTSLGCFGRCNFCALWSITNGKYLQRSPER IVAELQGIQEEIVFFCDDESMCDTRRMDQLADLIQEAGIRKKYFLYGRVDTIVKHPEL FAKWKNIGLIQVFVGFESFSDERLQGLNKNITVAQQEEAVKILNDLNIDIYASFVIDP SFTRPEFAQLIAYTRKLNIAYAALSVLTPLPGTALYEQNKDRLLTHDPKFFDFMHTVL PTALPLQQFYSEYARTLMKATPIPRYFRFIAKFDRQRRLSTMKELYGVVGDVRKGYQW HQAKES" gene complement(999656..1000264) /locus_tag="Dhaf_0907" /db_xref="GeneID:7257876" CDS complement(999656..1000264) /locus_tag="Dhaf_0907" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: azo:azo2487 putative TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002457406.1" /db_xref="GI:219666971" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7257876" /translation="MNKDTTLSRRERKKEETKQSILRTAIHFFQTQGYDATTMEQIAE AVDLSKVTLYNYFPSKELIVAEFFQSMSHQFVDQVLDMLAKLSTTRSKIYEYFRGQFE WNRQYRELLQVYFVHQFQSMLQPEAYQNSGMDQVLAQIIGYGQEAGEIRRDLPTEYLA KHLEIMYVMEFMVWILEGDSWNPDQHLGAMVDLFMNGAENKR" gene complement(1000600..1000959) /locus_tag="Dhaf_0908" /db_xref="GeneID:7257877" CDS complement(1000600..1000959) /locus_tag="Dhaf_0908" /inference="similar to AA sequence:KEGG:Amet_2930" /note="KEGG: amt:Amet_2930 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457407.1" /db_xref="GI:219666972" /db_xref="GeneID:7257877" /translation="MSINTKENIDAIFEKLESFLKSKTVIGEPIKIGETTIIPFIDIT FGLGTGGGGGKDEKGNDGTGSGAGAGAKISATAVLVIKGDQVELLPIKKAGGLEKLLD MVPEIVDKVKEQKEDDD" gene complement(1000949..1001671) /locus_tag="Dhaf_0909" /db_xref="GeneID:7257878" CDS complement(1000949..1001671) /locus_tag="Dhaf_0909" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_2929 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457408.1" /db_xref="GI:219666973" /db_xref="GeneID:7257878" /translation="MFLSILGFLLQILGYLLLAVLLLCLILIIVPYHYRVAGEKYEQS LLEGSIIWLFGGIKIDFSRTFPGRFRVHLTVLGWFRHSFAPPTPPGKPKQGSLPPPGK SEEHKHSKEKKKSSFKEFLKPDILKEALTTLVKLLKHFQPHTLSVSAKIGFSDPMMTG LLYGLLSQFHFLIHRHGVHVQPVFDEECLEGQFLIGGRVWIPALLLMMAGFLLSKPVR SIYIPKIFKKPRKSKGGPQYVN" gene complement(1001692..1002138) /locus_tag="Dhaf_0910" /db_xref="GeneID:7257879" CDS complement(1001692..1002138) /locus_tag="Dhaf_0910" /inference="similar to AA sequence:KEGG:Amet_2928" /note="KEGG: amt:Amet_2928 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457409.1" /db_xref="GI:219666974" /db_xref="GeneID:7257879" /translation="MMTCRLDKLLLQDLLDGTIDPLEKLLVDEHLKNCPECRKELNEL KLLFWDLNDKSIYEIELPHELDQQLDQLKDLLLEQVSEPSPQSTFTTLMEIQRKNIKS ASKFLDYVPGVKTGNHLAKEGLKATPSVLKLVSKGLLKSTKLLKAK" gene complement(1002139..1002708) /locus_tag="Dhaf_0911" /db_xref="GeneID:7257880" CDS complement(1002139..1002708) /locus_tag="Dhaf_0911" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_2927 ECF subfamily RNA polymerase sigma-24 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457410.1" /db_xref="GI:219666975" /db_xref="InterPro:IPR000838" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257880" /translation="MDASDTTLLKVYRKNKNQGLELLYDRYKKYIYTIAYHYTGNKED ALDLTQEVFLSIFRSLDRFDDSFSMLPWIKRITVNKCLNYLRDKKDILSLNQTNESGQ EIQELLPSSNQTEEATLYLDTKETLTKAIHALPAEERMALILRHMKGMKYEEIAKIMG VPLGTVKTYLHRGRKSLKTSLSKDGLWER" gene 1002879..1003442 /locus_tag="Dhaf_0912" /db_xref="GeneID:7257881" CDS 1002879..1003442 /locus_tag="Dhaf_0912" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: btl:BALH_3229 ECF subfamily RNA polymerase sigma factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457411.1" /db_xref="GI:219666976" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7257881" /translation="MERVETEGVPHMFTNTIFNRSRATTHEDKERFCTYIHDYQLNMF RLAKSIVHNDTDAEDVTGEAILKAYRNLSELRSFASFKPWIMKIVVNEAYSLANRRKK VMYLEELEVPEESAESVMRESGELWAAVEKLEDEFRTITVLFYYEDMSIRDIGKTLGL PTGTVKSRLARARQKLKVLLVNEGGME" gene 1003443..1004831 /locus_tag="Dhaf_0913" /db_xref="GeneID:7257882" CDS 1003443..1004831 /locus_tag="Dhaf_0913" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbo:CBO1626 membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457412.1" /db_xref="GI:219666977" /db_xref="GeneID:7257882" /translation="MEHRNFDQFLKNQAKGEPINVPPGFAERMDSIMANLPEKTQRMR RIPKKILLVAAGFIVFASMSVAASPFVGEMTSGVIGYFNAPRDFKYISKQAVYEQYNS QMGVSVSDQGIKVTVDNLAVDDNYINVFYTVKSEKPIRLLGDEETIEQWRINWTAPHF WFKEDGRYIEPPAQNEIDAYLEDPYTLIGMQRFAVVGTLEDTVNLEIYADEIFGKEGR WHIPLSVDKSSVAVESLTVTPKLRAKVSTGWNGEYKHDITVEKVSISPFGNQIVLSER AENTFSQFALRDEQGRYLTVIPTATYGGNFFIKVTNNFEFIGGKTDMKELTLIPIVTG DEDDGLPAPQLMSAEIGSYPIFMPESELGGYVMEDLELTSEKAVATFRQEGAVGISNP DLRLLDENGDNLSFTAFYDDSYDRETGKITITLTFKDVSEEDIAKVKKVGYYTHPMKL NEHEAIRIKLAE" gene 1005015..1006202 /locus_tag="Dhaf_0914" /db_xref="GeneID:7257883" CDS 1005015..1006202 /locus_tag="Dhaf_0914" /inference="protein motif:TFAM:TIGR00843" /note="TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: mta:Moth_1772 benzoate transporter" /codon_start=1 /transl_table=11 /product="benzoate transporter" /protein_id="YP_002457413.1" /db_xref="GI:219666978" /db_xref="InterPro:IPR004711" /db_xref="InterPro:IPR006043" /db_xref="GeneID:7257883" /translation="MMGTSMSRTNKAGLRDLNLRNFAAGIVSALLAVTGPPAIILEAA ANGNFTTSQTILWMFSCYVVGGIYSILIPWYYKMPIVGAHSITGVAFLATVTAHFSYS EMIGAYIISALLMLAVGVFGIFSKLLEYVPKEIIAVMLAGMITRYMVNFVNSMTELPL IGGVALAVFLIFSKWKTKIPPMVAGIAMGTVLLFLTQPLEGAVLGSSPVMPALQMPTF NPLSFLSVSIPLALLILSNDAAVGLGALEQNDYRPPINKIISLSGIFSVLTSFFGGQS ANVAGMMSAICADPEAGPKEKRYMGAVVSGVIILFFGLFAWKLVPLIQVLPKSFTSLL VGFALLGVFGNSLSTGFSNPKMKLSAALTFVIALSNITLLNISAPIWSLLIGTLVARF IEK" gene 1006816..1007400 /locus_tag="Dhaf_0915" /db_xref="GeneID:7257884" CDS 1006816..1007400 /locus_tag="Dhaf_0915" /inference="protein motif:PFAM:PF04647" /note="PFAM: Accessory gene regulator B; KEGG: cbo:CBO0332 accessory gene regulator protein B" /codon_start=1 /transl_table=11 /product="Accessory gene regulator B" /protein_id="YP_002457414.1" /db_xref="GI:219666979" /db_xref="InterPro:IPR006741" /db_xref="GeneID:7257884" /translation="MISLNKMSNNLTNIITKDLDYNEDKKEIIAYSIETSLLAVIGTL LLILFAFIANALKPALIAALFGVALRKVSGGAHFNTPTKCLIFGAIVYTLLGFLAQTL IKYQLNYDYLLWISLASSFLIVIILAPVDSDSKPIHSKRLRNNLKMLSIVLIIVALII YKVSSEPLLIVSMCLGVLYQSLTLLPVFNRRGGG" gene 1007586..1009385 /locus_tag="Dhaf_0916" /db_xref="GeneID:7257885" CDS 1007586..1009385 /locus_tag="Dhaf_0916" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: bwe:BcerKBAB4_0315 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, nitrogen specific, NtrB" /protein_id="YP_002457415.1" /db_xref="GI:219666980" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013656" /db_xref="GeneID:7257885" /translation="MKKVFLKKSIIQSTLFSITISIFMITMVLMLFFGKTFWEKESVK LEYDLLTIALDVKQTIDSNLHLIPSCQDDVNILPRTQQMVKLDKVVKPLLQEKRPYSV AFYDLEFGWMVSEGKQIESVETILVDLHGASEIKVLNYDHITLVSVPVQLEKGLKGYV WAYATKSEFELGPFTGYSISFSLLFLSIGIIIILIQKFMKEIQHQLEEFSESIVHPET NLSWNSHGLPELEPVLDKIKGYTQELSAINEELEASQRRFTQIMEGISDGLFSIDREW RLLFYNDVAKKYFDKSDEELKMKNILEIFPSFSNTVTYQYIAEVFLTAEPAYFEADGM MTSERIFHTSIYPFEEGITVFFRDITEQRQQQHEMARLERLNLVGQMAAGISHEIRNP LTTVKGFLQLRGIKVTDPDEKEYNDLMISEIDRANTIISEFLSLAKDNMGSTQEQDIN QIIYRIFPMIQADANNGNKDLILNLNPLPSLWLNENEIRQLLLNFVRNALEVTPQGGC VIIQTYEDRNNVVLAVKDQGCGIPEEIRDKIGTPFFTTKESGTGLGIAISMGIAHRHN AELTFDTGDQGTTFKVIFKRRNILGKKDEGELS" gene 1009459..1010541 /locus_tag="Dhaf_0917" /db_xref="GeneID:7257886" CDS 1009459..1010541 /locus_tag="Dhaf_0917" /inference="protein motif:TFAM:TIGR00550" /note="3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate" /codon_start=1 /transl_table=11 /product="quinolinate synthetase" /protein_id="YP_002457416.1" /db_xref="GI:219666981" /db_xref="InterPro:IPR003473" /db_xref="GeneID:7257886" /translation="MYTMQQPLPAEYLSLSEEEMDRRIRKVKEDLGSRLLILGHHYQR DEVVRYADYRGDSLRLSQLAAQAEAEYIVFCGVHFMAETADILTVPEQKVILPDLGAG CPMADMADIEDVERCWEQLVAQYDEEFVPVTYVNSSAEVKAFCGRHGGLTCTSSNAMK ILKTLFSQGKRILFLPDEHLGRNSAMHLGLEEKDMFLWQREEWEMELPEAAPKIILWD GYCGVHQRFTPAHVDYVRVKYPGVTVIVHPECSHVVVEKADLDGSTDFIIRQITGAPE GSIWAVGTEINLVSRLAKENPDKKIVSLNENTCLCVMMSRISQPHLLWALENLAQGNV VNQITVKPEIAKEAIVALDRMLEMSK" gene 1010687..1011283 /locus_tag="Dhaf_0918" /db_xref="GeneID:7257887" CDS 1010687..1011283 /locus_tag="Dhaf_0918" /inference="protein motif:PFAM:PF02954" /note="PFAM: helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: sth:STH438 sigma-54-dependent transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Fis family" /protein_id="YP_002457417.1" /db_xref="GI:219666982" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR013656" /db_xref="GeneID:7257887" /translation="MSRVIHAITTPVIPQWNRELLFKILDNIHDVVLVIDTDTTIVYV NEVYARRLGVPATKVLGRRLDRIEPNSSTINCLKTGMPSQGREYVESLNIEVVSNTFP LYHDERIVGAVSIFRNVTKGAGLNQELISDRERVPMENPYNMKEITSRLEKELIVSAL GNYNNNRTQAMKALGISRRAFYDKLRKYGIEDRDKEMS" gene 1011317..1011571 /locus_tag="Dhaf_0919" /db_xref="GeneID:7257888" CDS 1011317..1011571 /locus_tag="Dhaf_0919" /inference="protein motif:COG:COG1250" /note="KEGG: chy:CHY_1740 3-hydroxybutyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase-like protein" /protein_id="YP_002457418.1" /db_xref="GI:219666983" /db_xref="GeneID:7257888" /translation="MRLEDIKKIGVVGAGNMGHQIALSCALAGYQVACTDISQVMLGK AEAFARSYLPERVAKGKMTQGEWGKKSGKGFYTYGGASHE" gene 1011564..1012865 /locus_tag="Dhaf_0920" /db_xref="GeneID:7257889" CDS 1011564..1012865 /locus_tag="Dhaf_0920" /inference="protein motif:PFAM:PF04015" /note="PFAM: protein of unknown function DUF362; KEGG: chy:CHY_1734 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF362" /protein_id="YP_002457419.1" /db_xref="GI:219666984" /db_xref="InterPro:IPR007160" /db_xref="GeneID:7257889" /translation="MSKASVSLVKVSEVYESLGQALDLCDGLAGLQVDDKILLKPNIV SWDFDYPFPPYGVVTTSTVMQALVQILVERGFENLIIGEGSLPGPKPQGDAIYEALGY GKLRDRYGVRLVDFNAEPFITTDYGDGFKLDIAQEALAVDKIINIPVLKTHNQAKVSL GIKNLKGCLSRRSKQFCHGLDQEELNLTFPRIIEKLPVALTIIDGLYTLEKGPGPTGK AYPKGLLLASRDPLACDLVGAAVLGYGAQEVPHLAFYAEKHGYSLELSDYEVKGESIE GYRGRIDYDFEWSEDNTGPAGFEKRGITGLAIRKYDSSLCTGCSVQFNPMLILLASAF KGEPFNRIELVSGKQQLASAGFNTTILFGKCACHLNKNNPNINQAITLWGCPPDLEKM VEELGKEGIQCDFNEYVRFRNYLFDRYKGKEGYNPEDWTIE" gene 1012901..1013515 /locus_tag="Dhaf_0921" /db_xref="GeneID:7257890" CDS 1012901..1013515 /locus_tag="Dhaf_0921" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: ckl:CKL_1248 predicted oxidoreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002457420.1" /db_xref="GI:219666985" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7257890" /translation="MDVKTAMLERHSIRKFKPDPVPEEMLRELLEAARLAPSGTNQQP WRFIVVKNQEVKEKIQGAAFHKKFLSEAPVLLVCCADLSTYATNTRRRLQELVDAGVF GEDEVANYPNADKPMDAETLQGYKPHAMLNVAIATEHIALRAVSLGLGTCWVQLMKAR EISKILDLPEHLIVTVLMPVGFPDQSPGMRPRLKLEEIIYKVIE" gene 1013719..1015806 /locus_tag="Dhaf_0922" /db_xref="GeneID:7257891" CDS 1013719..1015806 /locus_tag="Dhaf_0922" /inference="protein motif:PFAM:PF00120" /note="PFAM: glutamine synthetase catalytic region; KEGG: tex:Teth514_0554 glutamine synthetase, catalytic region" /codon_start=1 /transl_table=11 /product="glutamine synthetase catalytic region" /protein_id="YP_002457421.1" /db_xref="GI:219666986" /db_xref="InterPro:IPR008146" /db_xref="GeneID:7257891" /translation="MKIFGMNVFNDNVMRERLPKNIYKSLKNTIDNGLPLEPSVAEVV ASAMKDWAIEKGATHYTHWFQPLTGLTAEKHDSFIAPTNDGRVIMEFSGKELIKGEPD ASSFPNGGIRSTFEARGYTAWDCTSPAFLREEGTNIVLCIPTAFCAYTGEALDNKTPL LRSMEALSKQAVRILRLFGDEETTRISSTVGPEQEYFLIDKAYYEKRMDLVLTGRTLF GAKSPKGQEMEDQYFGSINERVSAFMHDVNVEAWKLGIAAKTQHKEVAPGQYEIAPIF SVTNVATDHNQLIMDILKKVANRHGLVCLLHEKPFAGVNGSGKHNNWALGTNSGKNLL DPGRTPHENAQFLTFLCAVLKAVDEHADLLRASAANPGNDHRLGANEAPPAIISVFLG DQLSDILAQLQNGGLTHSIAESRMNIGVPTLPVLRKDSTDRNRTSPFAFTGNKFEFRM VPSSLSIAGPNIVLNSIVAEALCQMADRLEQAEDFNADLRKLLKEIAVKHSRIVFDGN NYSGEWVEEAERRGLPNIRSTVDAIPAWVTEKAVALFEKHGVLSGTELHSRYEILLEQ YNKIINIEAQTMLYMVKRQIMPAGLKMIQNLATGIAAVKAVSGALVSVQERLLNQVSS VMVAVDESLQALEGKTNEALAMGDVFEQGVFYRDEVFTAMNTLRAAVDQLEELVDEEY WPLPSYADMLFKL" gene complement(1016010..1017155) /locus_tag="Dhaf_0923" /db_xref="GeneID:7257892" CDS complement(1016010..1017155) /locus_tag="Dhaf_0923" /inference="protein motif:PFAM:PF07907" /note="PFAM: YibE/F family protein; KEGG: aoe:Clos_0144 YibE/F family protein" /codon_start=1 /transl_table=11 /product="YibE/F family protein" /protein_id="YP_002457422.1" /db_xref="GI:219666987" /db_xref="InterPro:IPR012507" /db_xref="GeneID:7257892" /translation="MLQNINRKELVFTIVILIAIAILTLLPTGFQKQEYHFTEGVRAK VISVNNIGVHSSGIYNIGDQSALIEIETGSHKGEQVQANNMLTGSLSVDKIFQAGDKA WVLLGFDEDNKINFANMIDHYRIDKEILLIGTFALVIIIFSGFTGVRTLLSFTFTLLC IWKILIPAMLYGYNPLIVALLVGNVLTVVTLLSVAGFTRKAYASIISAVTCSIATCLL AILFGSLFNIHGAVMEGAESLLYAGFMDLDLTLVFQGGIYLACSGAVLDLAIDISSAL EEIIHNNPHVTKTALMKSGLNIGKSVVGGQTTTLLLAYMGSYITVMMVFMAQGTPLMN ILNSKPIAAEILHTFVGCIGLVLVSPLTSLICGLIYDWDNNTAQNQG" gene complement(1017296..1018879) /locus_tag="Dhaf_0924" /db_xref="GeneID:7257893" CDS complement(1017296..1018879) /locus_tag="Dhaf_0924" /EC_number="3.1.3.1" /inference="protein motif:PRIAM:3.1.3.1" /note="PFAM: Alkaline phosphatase; KEGG: aoe:Clos_0143 alkaline phosphatase" /codon_start=1 /transl_table=11 /product="Alkaline phosphatase" /protein_id="YP_002457423.1" /db_xref="GI:219666988" /db_xref="InterPro:IPR001952" /db_xref="GeneID:7257893" /translation="MFKNFKMSKRFLASSLCLVMALSLATGAVLDSRPASVVAAQPAA TAKAEVTEKTPKYIFMFIGDGMAAVQVNSAQIYGGTNKHNQMALDKMNFQDFEAVGYQ TTQDATSFAPDSASTATSLSSGFKTWSGTIGLKPVGSKSGNKPENVEGTIPKTIAERL KAEKGMKIGIISTVTINHATPAAYYAHVASRNDYYDIALQMANSGFDFFGGGTISQPT GKDKDQKDAYDVMKEKGYKIAKTKEDILALNSQSGKAYAVTPVTQDSGAMPYAIDNKD GDLTLADFVKKGIDVLDNDKGFFMMAESGKIDWAGHANDAKANIGDVIAFEEAIQVAI DFAAKHPEETLIIVTGDHETGGMTIGQATTGYDTAFHILESQKISYVAFDALINKMKA DNPSLKFDDVMPVITESFGLVNKTKNDISRPGEPSYMTLELSDREVAKLKKAFMETMK DKPTDSEENDLLYGGYNPLSVTLTHILNNKAGIGWTSYSHTGVPVPVYATGASAELFN GAYENTAVYDKLVKATNLN" sig_peptide complement(1017296..1017379) /locus_tag="Dhaf_0924" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.304 at residue 28" gene 1019130..1019498 /locus_tag="Dhaf_0925" /db_xref="GeneID:7257894" CDS 1019130..1019498 /locus_tag="Dhaf_0925" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: aoe:Clos_1085 ArsR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457424.1" /db_xref="GI:219666989" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7257894" /translation="MCAYTADFDRCDCNTIHEDVVADVREHMPDEDNLIDLADLFKVF GDSTRVKILCALFRAEMCVCDIAVLLGMTKSSISHQLRVLKQSKLVNYRKSGKVVYYS LADDHVKTIFDQGLLHICEK" gene 1019622..1019774 /locus_tag="Dhaf_0926" /db_xref="GeneID:7257895" CDS 1019622..1019774 /locus_tag="Dhaf_0926" /inference="similar to AA sequence:KEGG:Cbei_1449" /note="KEGG: cbe:Cbei_1449 heavy metal translocating P-type ATPase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_002457425.1" /db_xref="GI:219666990" /db_xref="InterPro:IPR001366" /db_xref="InterPro:IPR006121" /db_xref="GeneID:7257895" /translation="MEAAIKKEFILEGLCCGNCAAKIERDVARLEGMASAAVDFVAGK ASVQGR" gene 1019918..1022320 /locus_tag="Dhaf_0927" /db_xref="GeneID:7257896" CDS 1019918..1022320 /locus_tag="Dhaf_0927" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bwe:BcerKBAB4_0510 cadmium-translocating P-type ATPase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_002457426.1" /db_xref="GI:219666991" /db_xref="InterPro:IPR001366" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006404" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7257896" /translation="MPDSSRSQSQERVKYCIEGEFCANCSAKMERALSATEGIGETSI NYAMKTVFLPPGTMGRAQAIIEKIEPGVKLVAVKEKGAVNAPEKVQYRIEGEFCPNCS AKMEQALSATAGIGETTINYAMKTVLLPPGMMSKAQEIIERIEPGVKLMPVEKKAVKN SIHDAEEEAKETKQKLLKIFIAGIFLVIGLIFGSRWHNTSLEVLEYLVFLLAYGLVGY EVLAKAFRNIMRGSVFDENFLMSIATLGAIAIHELPEAVGVMLFYAVGEYFEDRAVNR SRRSIQAVLNIRPDYANLVNGLETKRVDPDDVHIGQLILIRPGEKVPLDGEIVHGSSY VDTSALTGESVPRSVKVGDSVLAGIINTSGVLTVRVTREFADSSVQKILDLVENASAR KAKTEKFITTFARYYTPAVVIIALGIALIPPLFMGGDFREWLYRAMTILVISCPCALV ISVPLGYFGGIGGASRHGILVKGANYLEALTSVKTVIFDKTGTLTQGVFEVNKIETSG HYTEAQLLEIAAAAEVHSSHPIAKSIRDKWGKEIDSVSLTHYEEISGKGIRSEFKGKV VLVGKKDLLLENSIAVPELEMSEVGTQVYIGVDGEYAGVLMISDRSKEGAKEVVAQLN QRGITTVMLTGDQRSVAEAVAEQLGIREYHGDLLPEDKVTWLEHYQQKLKGKGKVVFV GDGINDAPVLSRADIGVAMGGLGSDAAIEAADVVLMEDRPGKLVSAMDIAQFTKKVIW QNIGFALVIKLGFIGLGMFGVANMWEAVFADVGVALLAILNATRVRRYTRPEKAAALP SL" gene 1022401..1022778 /locus_tag="Dhaf_0928" /db_xref="GeneID:7257897" CDS 1022401..1022778 /locus_tag="Dhaf_0928" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: swo:Swol_2087 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457427.1" /db_xref="GI:219666992" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7257897" /translation="MTSNKCHENNENISCEVVCTHPDVIRAYADQMLSLDRATKLADL FKTLGDPTRVRLMDALAKTEICVCDLAELLGLSQSATSHQLRVLRSSNLVKYRREGKM VYYSLHDSHVQELYRQGLEHIDE" repeat_region 1022907..1024470 /note="ISDha8" gene 1023041..1024399 /locus_tag="Dhaf_0929" /db_xref="GeneID:7257898" CDS 1023041..1024399 /locus_tag="Dhaf_0929" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002457428.1" /db_xref="GI:219666993" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257898" /translation="MFNIRQERLFSLEEILETSPRESYALILGPLDINPLLEAVSKKA IFGAPTQLNYTAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEET PVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIEDQLSCTFTELAQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHP YLNPSYILADAGYDYIPIYQQARCIGARALIDYNKRNEQLPEDNDKYFRPICQKGYSY RYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRI AA" gene 1024568..1024951 /locus_tag="Dhaf_0930" /db_xref="GeneID:7257899" CDS 1024568..1024951 /locus_tag="Dhaf_0930" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ppd:Ppro_2279 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457429.1" /db_xref="GI:219666994" /db_xref="GeneID:7257899" /translation="MLSALFDREEIPPDAIKYIMFYCLDVYNDKGEIGKKGTSAMAMM FISNWLCQFGKAKDFPIEIAYLTKENVFIGQTSKIVMALQQGGVVVVRLYYGEEHYVP LGCVFIVAMIIMNERVPHRIEQRVA" gene 1024964..1026175 /locus_tag="Dhaf_0931" /db_xref="GeneID:7257900" CDS 1024964..1026175 /locus_tag="Dhaf_0931" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cbk:CLL_A1874 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457430.1" /db_xref="GI:219666995" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257900" /translation="MSRRKQLKIKKAGLEHLEQYNQLLRYVFQVTDRQLHQIGWEEDE IIRAKSPVLEQADVWGWFDGDKLISQVAVYPLQVRIFNKTYNMGGLTGVGTYPEYTNQ GLMHKLLYQALENMKKQGQSISFLYPYSIPYYRRKGWEIISDRIIYEIQDYQLPKNKQ VSGEIERVPVEDEQVKKTYERFALQTHGAMLRNDLAWREYWLWDPDDMMAAVYYNESG QPDGYVLYRIADEVFHIKDMIFINEEARSGLWNFISAHFSMIAKVVGHTYTDEPLAFL LEDADIKETISPYFMARIVDLEQFIAQYPFKPDTTDREWTFMLDDPLLSWNQGVFTLR ITAAGQGEVIRASEKSNDKIDIQTMTTMLLGYKRPDYLHKIGRISCRSKTVDMLEDAI EQQTPYFSDYF" gene 1026229..1026597 /locus_tag="Dhaf_0932" /db_xref="GeneID:7257901" CDS 1026229..1026597 /locus_tag="Dhaf_0932" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_1802 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457431.1" /db_xref="GI:219666996" /db_xref="GeneID:7257901" /translation="MKKTILIGYLILLVAVASGGFWIGRNTADPIAGATFYATIEDID QNNFLVNGLDVNDINNRGEVYFSVDNKTKLEWRHTQITREDLQIGDTISVTYLGEVQE SYPRRIVNPVIRVTLLEDEK" sig_peptide 1026229..1026315 /locus_tag="Dhaf_0932" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.461 at residue 29" gene 1026915..1027832 /locus_tag="Dhaf_0933" /db_xref="GeneID:7257902" CDS 1026915..1027832 /locus_tag="Dhaf_0933" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457432.1" /db_xref="GI:219666997" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7257902" /translation="MRIEQLYYLVEVSKNKSLSVAAEQIHVSQQNLSVAIRNLEKEFG VELLVRSYKGVSLTKEGEEFVNKAQELLTKIDEFYSQFSKPLPKKVLKGKLRIDVVPY MTLPDILVSFYKLHPQVNVILEEHSPQEIMCNVAAGISDLGIIFRTSEDPRFFEAVHD LGLSYESILDDKIFVCAGKKSPLKNKRVITHTELFKQKLIVSEDLYGWILEIIKRYQD PADLQIQKSNSMQIYKKVIEEGLAVGFVTGIGLEKELIFKKGEVVPIAIEKHNNITIG VVYRAVNSQTEISKELIDYLKLTTQDYRC" gene complement(1027839..1027967) /locus_tag="Dhaf_0934" /db_xref="GeneID:7257903" CDS complement(1027839..1027967) /locus_tag="Dhaf_0934" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457433.1" /db_xref="GI:219666998" /db_xref="GeneID:7257903" /translation="MTQYLPETEYLLQIFKQMLQNAYKLKKLREHLSEEIGFHYGQ" gene 1028038..1029255 /locus_tag="Dhaf_0935" /db_xref="GeneID:7257904" CDS 1028038..1029255 /locus_tag="Dhaf_0935" /inference="protein motif:PFAM:PF08245" /note="PFAM: Mur ligase middle domain protein; KEGG: bpu:BPUM_3259 capsule biosynthesis protein YwsC" /codon_start=1 /transl_table=11 /product="Mur ligase middle domain protein" /protein_id="YP_002457434.1" /db_xref="GI:219666999" /db_xref="InterPro:IPR008337" /db_xref="InterPro:IPR013221" /db_xref="GeneID:7257904" /translation="MQFALALMFFVFCLGVYEQIRHNRNLNSIPLRVNINGTRGKSTA TRLITGILKEAGEKVVGKTTGTSARIIYWDREEEEPIKRGPLGPNIIEQKTVVRKAAR LGASAFVTECMAVNPDYQITFQEKLVKANVGVIVNVREDHMDLCGPTLDFIAESFTAT IPRNGTLVVADSRYNDYFRREAGKRNSRVLITDEKEIPDGYLEKFGYIVFPENIALAL AVARALNIDKDIALRGMLNANPDPGALMIHPLDKQEGSYFVNGFAANDPNSTRLIWDH ITAMGYATANPMVIVNCRPDRVDRTLQFAGEVLPQMDIEILVAMGETVGPISEGVHTG KIEPRQYINAEGLSPHEVYHMIKDDFAGRMVFGVGNIHGGGEELVELIIYPTGNGFIQ QEERRQIVAADQY" gene 1029236..1029691 /locus_tag="Dhaf_0936" /db_xref="GeneID:7257905" CDS 1029236..1029691 /locus_tag="Dhaf_0936" /inference="similar to AA sequence:KEGG:BSU35890" /note="KEGG: bsu:BSU35890 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457435.1" /db_xref="GI:219667000" /db_xref="InterPro:IPR008338" /db_xref="GeneID:7257905" /translation="MLLTNIDAMIIMGVILSLLFTEITGILPAGLVVPGYLAMLARQP QAIFLTFLISILTYAIVYFGVSKVTILYGKRKFVAMITVAIVLQFIIHALVPVFDYSM ISGLAAVGIIVPGLLANTIQRQGLATTFLSTGLLSVLTYGCAVLLNVQI" gene 1029707..1029841 /locus_tag="Dhaf_0937" /db_xref="GeneID:7257906" CDS 1029707..1029841 /locus_tag="Dhaf_0937" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457436.1" /db_xref="GI:219667001" /db_xref="GeneID:7257906" /translation="MNKALTIKEKCLYLMKISKRRTGTQTLVVMGVMLAVIGVNYLFL" gene 1029859..1030695 /locus_tag="Dhaf_0938" /db_xref="GeneID:7257907" CDS 1029859..1030695 /locus_tag="Dhaf_0938" /inference="protein motif:PFAM:PF05908" /note="PFAM: protein of unknown function DUF867; KEGG: oih:OB3345 phage-related replication protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF867" /protein_id="YP_002457437.1" /db_xref="GI:219667002" /db_xref="InterPro:IPR008585" /db_xref="GeneID:7257907" /translation="MKKGLNKVLAVALVFTFGIGASAYALTPGYHSFAELSAAEAAAD YTIKTNDIGSDTTVLALHGGGIERGTSELVEALNGYGKYNTYSFEGLKAADNGSLFLM AVEFDEPTAVSMVQDSDYTVSVVGAAGDDEITYIGGQNKLLAELIKLHLTTKGYQVQT LSVPDRIAGILDSNIVNQNQLFKDSYRLGGVQIAVSKGLRDKLAADPASLTGYAGAID DALSGSWPVIVSQLEKITNANYNGFLHKFDPTKPSFEKKVNQILKKGAKTPKELIENI QE" sig_peptide 1029859..1029936 /locus_tag="Dhaf_0938" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.892 at residue 26" gene complement(1030848..1031561) /locus_tag="Dhaf_0939" /db_xref="GeneID:7257908" CDS complement(1030848..1031561) /locus_tag="Dhaf_0939" /inference="protein motif:PFAM:PF05908" /note="PFAM: protein of unknown function DUF867; KEGG: oih:OB3345 phage-related replication protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF867" /protein_id="YP_002457438.1" /db_xref="GI:219667003" /db_xref="InterPro:IPR008585" /db_xref="GeneID:7257908" /translation="MINTGIFARPKRILICSCLLVLLFAEPTATASGATYLEARELPP PPEATLDDEVNINVKNFGDYEIRTGVTDSKVAVIAIHGGKIEQGTSELAYALSARNHY NYYTYLGVRDKDNASLHIPSAQFEEPAALAMVAQSETTLSIHGCSGAGEFTYIGGLDT PLAGKVKDALTEYGFTVLDAPKHLAGLSPDNIVNRNQNGGGVQLEISKGLRAQFLDAD SSQLTRYVAALSEALGNRP" sig_peptide complement(1030848..1030943) /locus_tag="Dhaf_0939" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.463 at residue 32" gene 1031928..1032641 /locus_tag="Dhaf_0940" /db_xref="GeneID:7257909" CDS 1031928..1032641 /locus_tag="Dhaf_0940" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002457439.1" /db_xref="GI:219667004" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7257909" /translation="MLFLGKVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAF DRENPDVVILDIMLPGQDGLSLCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYV AKPFSPRELVARIKAVLRRSQAADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPRE FDLLYHLAQNPQRVFTREELLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHEYLQTV WGVGYKFTPPVKGGETGFA" gene 1032634..1034256 /locus_tag="Dhaf_0941" /db_xref="GeneID:7257910" CDS 1032634..1034256 /locus_tag="Dhaf_0941" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pth:PTH_0246 hypothetical protein" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457440.1" /db_xref="GI:219667005" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7257910" /translation="MRNDLRWIRRKLQQAAGAVRGFWLGVKRLLGEQFNKNIYTRILF TNVTVFVVGLIALILFSGFMVKQVTYDQVEQELLRKAKRVNFALLQQTNYIWGKAPEG EVNDQAQEKQSFLKYLADLFDARITIFDREGTILDTSAEQEVVPGSKVEFRHVESFTK GGTAITRTTDPETGQLAFLVVVPMGNNNQATENGILLETKPSNVNLALNKLHVYLVIG GMTVLVIVLIVSVNLAMYISRPISRLAATVGEISSGGYVLSTDDQPLDEINVLAGQLN KLTERLQKIQSESLRMDEERARLFAEISHELRTPLTAVQGFVEAIRDGVVQDEVLRER YLDTIYTQTVHIGRLVDDILVLSRLESGNITVEKLPVDLVALAQGVVVSMEAVAASKQ NGIYLEKKVEKTVVIGDVDRLEQIIRNLLKNAIAATENGTIRVGVEERYGREVVLTIE DNGTGIAPDDLPHIWERFYRVKNRQEGRQQEKGSGLGLVIVKKMVQLQGGRIEVTSQL GKGTVFSIIFPSFQASALTDHSYARKQGTIDK" gene 1034407..1035540 /locus_tag="Dhaf_0942" /db_xref="GeneID:7257911" CDS 1034407..1035540 /locus_tag="Dhaf_0942" /inference="protein motif:PFAM:PF00924" /note="PFAM: MscS Mechanosensitive ion channel; KEGG: pth:PTH_0619 small-conductance mechanosensitive channel" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_002457441.1" /db_xref="GI:219667006" /db_xref="InterPro:IPR006685" /db_xref="GeneID:7257911" /translation="MDLLLLELQNQWESVIYGTNLRRIGGAILILLLALLLKKIFSKV IIVLMQKLAKKTKSTVDDSIVEALDKPVQLGFIIIGLQIAAQMLILPPEISVFVQRVI RSLILYTLFWSAYRAADVFTALFEQRALLTVDKFDDMLVSFLSNGAKAVIIVLGAITV AQVWFSEIAGVLTGLGLGGLAFALAAQDTAKNLFGSVTIMLDRPFNIGDWVLTPSVEG TIEEIGFRSTKVRTFADAVVTIPNSVMSNDPITNWSRMGKRRINFQLKVSYQTTAEQL QQCIQSLRTILEEHPEVHPETILVYFERFGENSLNIFVYFFTNTTNWKKFLEVQEDIN FKIMALLEELGVFVALPSRSVYIEGAKSEALKEDVVTVTTAKA" gene complement(1035567..1035869) /locus_tag="Dhaf_0943" /db_xref="GeneID:7257912" CDS complement(1035567..1035869) /locus_tag="Dhaf_0943" /inference="protein motif:PFAM:PF05437" /note="PFAM: branched-chain amino acid transport; KEGG: fma:FMG_0516 hypothetical protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport" /protein_id="YP_002457442.1" /db_xref="GI:219667007" /db_xref="InterPro:IPR008407" /db_xref="GeneID:7257912" /translation="MKSYLLLITGMMVVTYLPRLLPLLMMTGRPLPPVLKRFLQYIPY TALSALIIRGIMQSAPDMRWATVVGILAAGICSWLKGSLVLSVLVAIMAAFVVLQL" gene complement(1035866..1036573) /locus_tag="Dhaf_0944" /db_xref="GeneID:7257913" CDS complement(1035866..1036573) /locus_tag="Dhaf_0944" /inference="protein motif:PFAM:PF03591" /note="PFAM: AzlC family protein; KEGG: fma:FMG_0515 branched-chain amino acid transporter" /codon_start=1 /transl_table=11 /product="AzlC family protein" /protein_id="YP_002457443.1" /db_xref="GI:219667008" /db_xref="InterPro:IPR011606" /db_xref="GeneID:7257913" /translation="MNRENQLADSIKEGLIAALPLIFGFFPVAMAFGLLAKNVGISLQ DTGLFSVMVFAGASQFMALDMIKDGISAGSIILATFLLNLRHFIMSASLSVRLQGIKK HWLFVIAFGITDEAFSLISLRNRTLDIPFLLTLQIIPYFSWVAGTIAGYLVGTMLPET VQLSLGVGLYAMFMALLAPEIKKSFSVLFLAVMSGIFYLVGSHFKLLPPSWCFIAAVI LAAGIGAFLIKEQEVSP" sig_peptide complement(1035866..1035961) /locus_tag="Dhaf_0944" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.861) with cleavage site probability 0.647 at residue 32" gene 1036743..1037297 /locus_tag="Dhaf_0945" /db_xref="GeneID:7257914" CDS 1036743..1037297 /locus_tag="Dhaf_0945" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bca:BCE_2481 DNA-binding protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457444.1" /db_xref="GI:219667009" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7257914" /translation="MKDLNQIVANNLKRIREEMKLSLDKVADLTDVSKGMLRQIEAGE SSPTIKTIWKIASGLKIPYTSIINIPQPETFLVLKEEIEPQVEDDGRYKVYSIFPSED GRKVEVYTIELEKDGSFASNSHGERTQEFITVYEGVLTIQVDDEEYSVKAGDSIKFMA DRAHAYSNRTEHLTRASMVIYYPM" gene 1037520..1042139 /locus_tag="Dhaf_0946" /db_xref="GeneID:7257915" CDS 1037520..1042139 /locus_tag="Dhaf_0946" /EC_number="1.4.7.1" /inference="protein motif:PRIAM:1.4.7.1" /note="PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: drm:Dred_2805 glutamate synthase (ferredoxin)" /codon_start=1 /transl_table=11 /product="Glutamate synthase (ferredoxin)" /protein_id="YP_002457445.1" /db_xref="GI:219667010" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR002489" /db_xref="InterPro:IPR002932" /db_xref="InterPro:IPR006982" /db_xref="GeneID:7257915" /translation="MQNYGLPQKQGLYDPALEHDACGMGFVVSIKGEKSHEIIDEALT VLENLNHRGASGADENTGDGAGILVQIPHDFFQRECEVLGFALPEKGNYGVGMIFAHR YADFRQIQMETFERIVIEEGQRILGWREVPIDKSTIGESAKTVMPRFIQVFIEKNPEI LDVMDFERKLYTIRKRAEKIILPMCEDKGGTFYVASLSAKTIVYKGMLTAEQLRHFYL DLSDLDFVSALAMVHSRFSTNTFPSWERAHPNRYIVHNGEINTIRGNVNWMRARQKCI DSSLFEDIAKVYPIVDEFGSDSAMFDNSLEFLHLTGRSLPHAVMMMIPEPWENNDFMP KAKRDFYAYNSFLMEPWDGPAAMGFTDGVVIGGVLDRNGLRPSRYYVTKDDKVILASE VGVIDIKPENVQYKGRLEPGKMLLIDTEAQRIIADEEIKAGVARKNPYGEWIEKHIVK LSSLPEAARMDQGAGSVGIVEESEESKDQGQLIQQQKAFGYTFEDITKTIQPMAVEGV DPVGAMGMDSPLAVLSEKPQMLYLYFKQLFAQVTNPPIDGIREEIVTSCTMLLGNSGN LLDPDQENTASLFLEHPILTNEQLNRIKHLQHGQFKTVTLSMLYPVAGGPKAMERALE RLCREADKAIAEGANIIILSDRGVDKEQAAIPALLASSGLHHHLIRKEIRTNLGIVLE SAEPREVHHFCTLVGYGVTAINPYLAYETIEDLAAKGLLDGLTAQAGIKNFIKASVKG MLKVLTKMGISTMHSYHGAQIFEAVGLRKDLIDKYFTMTPSRLEGIGLEEIALENQMR HESAYDENSLYADSLEVGGYFQCKEDGEKHLYNPETIYLIQKACREGNYALFKEYTKK INEEEVYTLRHLLDFKYNAGDTIPIEEVESVDSIVKRFKTGAMSYGSISKEAHEALAV AMNRLGGKSNTGEGGEDCERFKVLTNGDTKNSAIKQVASGRFGVTSNYLVNAQEIQIK MAQGAKPGEGGQLPGRKVYPWVAKTRHSTPGVDLISPPPHHDIYSIEDLAELIHDLKN ANRGARINVKLVSEVGVGTIAAGVAKGKADVILISGYDGGTGASPRTSIRNAGLPWEL GLAETHQTLVLNKLRDRVVVETDGKLLSGRDVVIAAMLGAEEFGFATTPLIALGCVMM RVCNLNTCPVGIATQDEELRKNFTGKPEHVENFMRFIAQEMREIMAKLGFRTINEMVG RTDRLKSKETIKNWKASQLDLSQILYQPYAGSDVSRYNTQAQKHLLEKSLDMKKLLRV CQPALENQKPIRAKLKINNVDRVVGTIIGSEISKRYGEQGLPEDTIKLAFVGSAGQSF GAFVPKGLTLELEGDSNDYLGKGLSGGKIAVYPPRTADFVPEENILIGNVAFYGATSG EAYINGIAGERFCVRNSGVHAVVEGVGDHGCEYMTGGKVVILGKTGRNFAAGMSGGVA YILDFDENYCNKSMVLLENIQSEAELDEVKEMIRKHVEYTHSPQGGKVLADWESYATR FTKVIPKDYKRMLANIDKACQDGYSGDEALMAAFAEHFKTSEAAK" gene 1042152..1043669 /locus_tag="Dhaf_0947" /db_xref="GeneID:7257916" CDS 1042152..1043669 /locus_tag="Dhaf_0947" /inference="protein motif:TFAM:TIGR01317" /note="TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hmo:HM1_1039 glutamate synthase (NADPH) small chain" /codon_start=1 /transl_table=11 /product="glutamate synthase, NADH/NADPH, small subunit" /protein_id="YP_002457446.1" /db_xref="GI:219667011" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR006005" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257916" /translation="MGKATGFLEYQRIDPKKRAPEERIQDWREIKLPRDPEVIKTQGA RCMNCGVPFCNGGVVLNGMVSGCPLHNLIPDWNELIYKGQWEEAYRRLSRTSPFSEFT SRVCPAPCEGACTEGYIMEPVTINCIEYEIIEKAFAEGWVKPKKGKVTGKRVAVVGSG PAGLSAANYLNAVGHEVTVYERADRPGGLLMYGIPNMKLEKNVVERRINLMKESGIHF VLNTEVGRDVPAQDLVNQYDAVVLCIGATKARGLNVEGRDLKGVHYAVDFLKANTKSL LDSNFEGLETMAEKDGQEGGWISAQGKNVIIIGGGDTGTDCVATSIRHGCKSVHQFEI MPEPPAKRIEATNPWPEWPKKLKVDYGQEEAISLYGKDPRHYLINTKKIVGNEQGEVK EVHTVEVHWIKDSSGRMVPQEVPGSEKVWEADLVLLAMGFLGPEDAIPNELNLERDER SNLKAVYEEFETNVEKVFAAGDARRGQSLVVSALQEGKLAAREVDKYLMGRSGIR" gene 1044306..1045052 /locus_tag="Dhaf_0948" /db_xref="GeneID:7257917" CDS 1044306..1045052 /locus_tag="Dhaf_0948" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457447.1" /db_xref="GI:219667012" /db_xref="GeneID:7257917" /translation="MFKKMYLGIEIAHDYLRAIDINGSIVIDEPLDYAPWNSETGFLK AIDYCLSKEHKAFRKMNLFLSTPIEEFSNTESLRKIVSKDKRVSSITIIGNIIAAALG TLSSGIKLLGPGEFEKKLYIYSQKYATYFSLIWSGSVVEFLKIDKGYDEVNKIILSKG LFDLLTKVPVHVPKQYSSNPNMQSYLKFWNEEIKTVYISIPDLKRFSLEKRIDKYEVI YTNYSEFLITNGLKKIIDEMRMEVEYDRRH" gene 1045036..1045442 /locus_tag="Dhaf_0949" /pseudo /db_xref="GeneID:7257918" gene 1045723..1046439 /locus_tag="Dhaf_0950" /db_xref="GeneID:7257919" CDS 1045723..1046439 /locus_tag="Dhaf_0950" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457448.1" /db_xref="GI:219667013" /db_xref="GeneID:7257919" /translation="MRKIVFLAIIIVILPLTGCGNDTTKLPEDNNKDVQILNSSMNSG VKQFTNEIVPDWLYQSLQQKFNSATTSIKQEDITFILVNLKESDKSQVAAFVSIDRVN GYFILYEFRQGKYVEVYSKSEPVYGMQVYGGGKQLLAFISGHGGTGVQENSFHVIGYT SKGYSEIWSGIAEKFMFGGQVPDYRTIGSINLTMDNQTLVYSITEELYNKIDKPDKVE QTVEIYQYDTEQEKFVRIVK" sig_peptide 1045723..1045785 /locus_tag="Dhaf_0950" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.924) with cleavage site probability 0.837 at residue 21" gene 1046805..1047002 /locus_tag="Dhaf_0951" /db_xref="GeneID:7257920" CDS 1046805..1047002 /locus_tag="Dhaf_0951" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457449.1" /db_xref="GI:219667014" /db_xref="GeneID:7257920" /translation="MDNNKRELLIGVLKSGIAAIPHVGEALNEVLFEIRGRIAQKRLK DFTNSLLSPFMKKNKAKNSSI" gene 1047543..1047680 /locus_tag="Dhaf_0952" /db_xref="GeneID:7257921" CDS 1047543..1047680 /locus_tag="Dhaf_0952" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bth:BT_4513 putative rRNA methylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457450.1" /db_xref="GI:219667015" /db_xref="GeneID:7257921" /translation="MSNIIEISDFSLPNLDVFARLTETQLRNRLEPEIGIDLFSIKRT F" repeat_region complement(1047650..1049148) /note="ISDha7" gene complement(1047909..1049089) /locus_tag="Dhaf_0953" /db_xref="GeneID:7257922" CDS complement(join(1047909..1048829,1048829..1049089)) /locus_tag="Dhaf_0953" /ribosomal_slippage /note="PFAM: Integrase catalytic region" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_002457451.1" /db_xref="GI:219667016" /db_xref="GeneID:7257922" /translation="MINVSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTV RNWLKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDILKKGYRHLRPKQPEIIY QMIKKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQA MIGLDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLL NQKFKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEA LRNAVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFF STIKSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKA A" gene 1049123..1049521 /locus_tag="Dhaf_0955" /db_xref="GeneID:7257923" CDS 1049123..1049521 /locus_tag="Dhaf_0955" /inference="similar to AA sequence:KEGG:MM_3347" /note="KEGG: mma:MM_3347 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457452.1" /db_xref="GI:219667017" /db_xref="GeneID:7257923" /translation="MSDKPGMGQFILVVRKDLFLSFQAKLVLSRLSDSLIAIREQFEW PGTILGGGEPAIVCYFKTDNHAKKILKEVSNSLYSWVQPDLPEDLSFMKGNNLWLVNT SHESESYFVTEEKEELEEILGIRNIKIKQK" gene 1049631..1050413 /locus_tag="Dhaf_0956" /db_xref="GeneID:7257924" CDS 1049631..1050413 /locus_tag="Dhaf_0956" /EC_number="2.7.7.47" /inference="protein motif:PRIAM:2.7.7.47" /note="PFAM: DNA polymerase beta domain protein region; KEGG: aoe:Clos_2446 3''-adenylyltransferase" /codon_start=1 /transl_table=11 /product="3''-adenylyltransferase" /protein_id="YP_002457453.1" /db_xref="GI:219667018" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7257924" /translation="MSTESKTIPLEATQALKIVQELLGSAVVGVYLFGSVVVGGLQVN SDVDVLVVVNRRLPAETRKDLVTRLMEVSGKIGNTDSIRPLEVTIINKTDVVPWRYPP KNEFIYGEWLREQYEGGQIPEPAYDPDLAIVLKQIRENSISLVGPDASDMLDLVPMKD IRRAIKESMPGLMEGIKGDERNVILTLARMWLTVTVGEISSKDAAATWAIPRLPKEQA ALLDLARRAYRGEGNDSWEGREHEIIELVGHMKLSIESGLGS" gene 1050473..1050859 /locus_tag="Dhaf_0957" /db_xref="GeneID:7257925" CDS 1050473..1050859 /locus_tag="Dhaf_0957" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tpe:Tpen_0017 nucleoside 2-deoxyribosyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457454.1" /db_xref="GI:219667019" /db_xref="GeneID:7257925" /translation="MKAYIGIKYHHDCRNRVTIEKIASILEDAGYETSCIIRDKEKWG SVTLAPNELMEATFKEIDSSNVVVIDVTEKGVGLGIESGYAYAKGIPVYIVAKKGSEM SNTMLGISKKVLIYEELEDMVTMFSK" gene 1050969..1051409 /locus_tag="Dhaf_0958" /db_xref="GeneID:7257926" CDS 1050969..1051409 /locus_tag="Dhaf_0958" /inference="similar to AA sequence:KEGG:Cthe_1711" /note="KEGG: cth:Cthe_1711 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457455.1" /db_xref="GI:219667020" /db_xref="GeneID:7257926" /translation="MGIINVLKNKKIKVTEIPKWGAFLRKQWEDNFANHLSVEEKKSI YLWNNSGICGYLWHLFSYEKRACLKREEAEKAFNNEHKGSCYVFWQHTDYALILENAY ILNAEDLEDEYDIYVVDKEFNWTYVKTHETLLCGPYFGRKDTKT" gene 1051560..1052021 /locus_tag="Dhaf_0959" /db_xref="GeneID:7257927" CDS 1051560..1052021 /locus_tag="Dhaf_0959" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: lsp:Bsph_3140 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457456.1" /db_xref="GI:219667021" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257927" /translation="MLNIRRATACDWQLLSDIAYKSEAYWGYNSDYMEKFKSMYQVTE EFISHNETYVIEDHCSVFGFYGLLVNDKDSSLEYFFIEPQSIGKGYGKLLWNHLVNIT CKSLGVHELVIVTSPQAKDFYIKLGANSLGEVESLLKKGRMIPQLSYKVHN" gene 1052209..1052640 /locus_tag="Dhaf_0960" /db_xref="GeneID:7257928" CDS 1052209..1052640 /locus_tag="Dhaf_0960" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: mbn:Mboo_2000 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457457.1" /db_xref="GI:219667022" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257928" /translation="MIVRDMIKEDIPQLAQLYKQFWGEDSSIDTMYIQFKKFQGNGSH LLLSAVEDNQLVGSVMGVICEELYGDCKSFLVLENMIVDKDHRNRGIGRALISELERR AAEKCNQIIFVTEANRIDACNFYESVGYRPEAYKGFKKKLK" gene 1052717..1053064 /locus_tag="Dhaf_0961" /db_xref="GeneID:7257929" CDS 1052717..1053064 /locus_tag="Dhaf_0961" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: cpy:Cphy_2018 PadR-like family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002457458.1" /db_xref="GI:219667023" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7257929" /translation="MPIDKSLLTGSTTMLILKLLEETDMYGYQMIEELSKKSQNIFEL KAGTLYPLLHSLEQKNMLISYEKSTTNLRVRKYYSITKTGRKYLDEKTKEWKVYTSAV NNVLGGVDVATVQ" gene 1053048..1054415 /locus_tag="Dhaf_0962" /db_xref="GeneID:7257930" CDS 1053048..1054415 /locus_tag="Dhaf_0962" /inference="protein motif:COG:COG0772" /note="KEGG: aoe:Clos_2351 cell division membrane protein-like protein" /codon_start=1 /transl_table=11 /product="cell division membrane protein-like protein" /protein_id="YP_002457459.1" /db_xref="GI:219667024" /db_xref="GeneID:7257930" /translation="MLQSNKFADYLETVRQQIRWKRAQTYVLEEIENHLADQKDAFQR DGLDEETAAIRAIAEMGDPVMVGEQLDRTHRPQPDWPLLAMTALLIILGLSIQFIIGT DINDGMERFYRQVTWAGLAVIVFLAAYFLDFTIIGKYSLIIYGLLMAIALGDYWLSGG GISGYNTAIYPLLLFPTIFAGLVYRMRNEGYWGLAFCGALAIIPIILISFMHYLTVLF LVGTSCLIILTVAVAKGWFRVRKLYALFMVYFPSGVIYSTMFFTMINQEYVRIRLQAA LNPSSDPTGAGYMATLVQKLLSHSQLFGEGLPVGDYGYYPIAKILPEINTNFLLTYLT HRFGWMLLIGILVIFAVFIVRAVLMSKRQKSALGQLVSLAIILTFAIQVLTYIAFNLG FLVFNPVSLPFISYGGRALLINTCLIGFLLSIFRTGSLVSDKVGGAGIKAGRLIQYEE HSCSS" gene 1054508..1055791 /locus_tag="Dhaf_0963" /db_xref="GeneID:7257931" CDS 1054508..1055791 /locus_tag="Dhaf_0963" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tpd:Teth39_2045 transposase IS116/IS110/IS902 family protein" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002457460.1" /db_xref="GI:219667025" /db_xref="InterPro:IPR003346" /db_xref="GeneID:7257931" /translation="MNFTQNEKLKQLSERSIVIGVDIASELHYARAFDWRGVELGKVF KFENSAEGFKNLYAWIERIKRQAQKDSIVVGAEPTGHYWFGLASYLKEQNIKLVLVNP FHVKRSKELDDNHPSKTDAKDPKTIAKLVIEGRYNEPYIPEGLYAELRIAVTCRVRIQ KEMNSIKNRIQRWLKIYFPEHETVFGKFDATSSMLVLQVAPLPRDIERLGVEGINRIW RDNKLRAVGMKRAKSLYEAAQKSIGCTEGESCSRMEIQLLLQDYHTKTAQYQAVTETI DGLCRQIPEVAKLLEIKGVGLVTVAGFLSEVGDIKRFNSPKQIQKLAGLALRESSSGK HKGQTTISKRGRARLRAILFQAVMPLVAKNAEFAEIHNYYTTRTQNPLKKKQSLIALS CKLIRVFYAILTKGTDYDPKKLIMDIHRPVEYLAA" gene 1056650..1057339 /locus_tag="Dhaf_0964" /db_xref="GeneID:7257932" CDS 1056650..1057339 /locus_tag="Dhaf_0964" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457461.1" /db_xref="GI:219667026" /db_xref="GeneID:7257932" /translation="MGKNLKGAFIYLGIIFISVILVYKLPQDSYSMIQYIVKPIRFEN SVLNLSGLVPLIMLFIGIRGLCRLEWFADKSKLLITIIVLILVMPAMRGTLDIAKTIY LSNLNNEMRSIDFKDIDIEISSITDHDVTLNIKLELTDYREDMSDFQIRMYLPDSWTV YFDKEFIDFDESYKSFGRRRPIIVDKEISVQLADGITRDNVFDSQWYWETFEFELFNN IDSSKLIYHGT" repeat_region 1057419..1058987 /note="IS element" gene 1057555..1058913 /locus_tag="Dhaf_0965" /db_xref="GeneID:7257933" CDS 1057555..1058913 /locus_tag="Dhaf_0965" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002457462.1" /db_xref="GI:219667027" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257933" /translation="MFNIRQERLFSLEEILETSPRDSYSLILGSLDIIPLLNAVSKKA IFGAPTQLNYSAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKT VVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIEDQLPYSFTELVQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHP YLNPSHILADAGYDYAPIYEQARSIGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSY RYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSM AA" gene 1059101..1059934 /locus_tag="Dhaf_0966" /db_xref="GeneID:7257934" CDS 1059101..1059934 /locus_tag="Dhaf_0966" /inference="protein motif:PFAM:PF08241" /note="PFAM: helix-turn-helix domain protein; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: gme:Gmet_2830 tellurite resistance protein TehB" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457463.1" /db_xref="GI:219667028" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="InterPro:IPR015985" /db_xref="GeneID:7257934" /translation="MKGELAKNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLP DITLLPGLSQLLDISIDKLLGFVSYDKQITIYEEEYKTQEYYWGIVPSKMCLRVLELI PPTTRLKLLDIGCGEGKDAVFFARNGYDVTAFDISDAGIEKTKRLADNAGIQVKVFKA DILDYRLDTNFDILFSSGVLHYVKPQLRKEIFSNYKQFTNPNGLHIFNVFVNKPFIDP PPEKEPTACKWVSGELFTHYHDWLIQECSEVIFDCDSSGILHQHAMNKVIAQKCRCKR T" gene 1059951..1060421 /locus_tag="Dhaf_0967" /db_xref="GeneID:7257935" CDS 1059951..1060421 /locus_tag="Dhaf_0967" /inference="similar to AA sequence:KEGG:Cphy_1870" /note="KEGG: cpy:Cphy_1870 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457464.1" /db_xref="GI:219667029" /db_xref="GeneID:7257935" /translation="MGHLGFSYIGLIFLLMLTIPNLLWIRHQPQGYDFRIENKVLLFF ERIGQVLVTCTALIFSDFNLRPWSLWTLWLVAAVILMLMYEVWWFRYFRSQKTLGDFY SSFCGVPVAGATLPVMAFFLLGIYGKVAWLLIAVVVLGIGHIGIHLQHRKEING" gene 1060474..1060803 /locus_tag="Dhaf_0968" /db_xref="GeneID:7257936" CDS 1060474..1060803 /locus_tag="Dhaf_0968" /inference="similar to AA sequence:KEGG:Cbei_4090" /note="KEGG: cbe:Cbei_4090 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457465.1" /db_xref="GI:219667030" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257936" /translation="MFEYVFINMDNPLYQQAVDLRYRIFFRPWNIKQEIIFDSYEDTA IHMICLTEGKINGYARLNYEGQEAILSQIVVDEEYWNQGLGSELVKCLLDKARLDKKD RVTLAQK" gene 1060953..1061405 /locus_tag="Dhaf_0969" /db_xref="GeneID:7257937" CDS 1060953..1061405 /locus_tag="Dhaf_0969" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: dth:DICTH_0190 hypothetical acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457466.1" /db_xref="GI:219667031" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257937" /translation="MSEVIIRLCERDDLSDVVKLMNELREVVQGDEIAFRDVNKIFTE MEQRPELYLNVVAEISGKVVGFISAIFYRTVFHKGGTALINELIITQAERGKGIGKRL VQMVQEEALKRGFDEVEVGTERANEGAQGFYRRCGFNEEYVLLGMEFE" gene 1061433..1061816 /locus_tag="Dhaf_0970" /db_xref="GeneID:7257938" CDS 1061433..1061816 /locus_tag="Dhaf_0970" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_1891 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457467.1" /db_xref="GI:219667032" /db_xref="GeneID:7257938" /translation="MVKKGISICCMLIAIILMATPYGIAMTFAPGPTELVTRYFSYFS LMPFGYGNWLPIITALLSIVVVFLLLLGIRKANTGKAVRVCLVVCIIASVLSWKSISQ VGVCVAALHSIVLMLQLPQNSVPIK" sig_peptide 1061433..1061510 /locus_tag="Dhaf_0970" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.696 at residue 26" gene complement(1061824..1063575) /locus_tag="Dhaf_0971" /db_xref="GeneID:7257939" CDS complement(1061824..1063575) /locus_tag="Dhaf_0971" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; KEGG: cyt:cce_4831 DNA polymerase I-like protein" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_002457468.1" /db_xref="GI:219667033" /db_xref="InterPro:IPR001098" /db_xref="InterPro:IPR002298" /db_xref="InterPro:IPR002562" /db_xref="GeneID:7257939" /translation="MDLNAMDIKRILHPADLVPYMEKLTAAKVIAVDTETTGLDPHTC QLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGVKVFQNAKFDLQFLMALDIF PPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQTSNWQGELTESQILYA ARDAEILLRLRKVMIPQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEK TEAERKTALDELYTYVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEHGIPVAATAK QDLYPHRRHPLVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGRMS CWNPNIQQIPRDSEFRACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGED LHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQA TEFRERFFKAYTGIHRWHQSIKAHLPKEGRTLAGRKFVYYEKAGLPGYYNTPVQGTAA DIVKKALGLLIERLAGTDTYIVGIVHDEILLESPAEEAHTMAALLKSTMEEAANAILP KVPTKVDVLVSESWAEK" gene 1063794..1064212 /locus_tag="Dhaf_0972" /pseudo /db_xref="GeneID:7257940" gene 1064260..1064616 /locus_tag="Dhaf_0973" /db_xref="GeneID:7257941" CDS 1064260..1064616 /locus_tag="Dhaf_0973" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: cdf:CD2259 hypothetical protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002457469.1" /db_xref="GI:219667034" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7257941" /translation="MIKKAKDLPIELEPNLKGGKDTVRIVNILQKDEMYGTGRLFGVS IIPPGGSIGQHTHAGDFETYYILKGKALVNDNGNICELGPGDMTQCKEGDFHSIENIG DVDLEYLAVILYSVKE" gene 1064761..1065171 /locus_tag="Dhaf_0974" /db_xref="GeneID:7257942" CDS 1064761..1065171 /locus_tag="Dhaf_0974" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2929 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457470.1" /db_xref="GI:219667035" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7257942" /translation="MRWEFREYIINTDKSLVSADRVKEFLSDSYWAGDRTKELIEKTI EHSFCYGVYYREEQVGFARVVTDYATIVWISDVYIDRNHRRKGLGKKLIACILETPEF KNVRIALVTRDAHGLYEQFGFEGVESVFMMRKPV" gene 1065448..1066068 /locus_tag="Dhaf_0975" /db_xref="GeneID:7257943" CDS 1065448..1066068 /locus_tag="Dhaf_0975" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: csc:Csac_0472 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457471.1" /db_xref="GI:219667036" /db_xref="GeneID:7257943" /translation="MARKRRAVTFIVILYSLLSFTIGCAEHPDSAKDTINEIVESYYK RFEPTNEGELMILAQRPLDDKVLVLAEKYSGDGHSSTELFLINSEKSIEKRATGFTPL SMCFTVNLLEYENNAIVFGSFNDTKWEIETDTKKTVDIQSILIKFKNGEIIEEPVGLG YIISLKPVAEVEAIELYDHNGLLQSDLNDLRRYGSVFTETSFIDIL" sig_peptide 1065448..1065525 /locus_tag="Dhaf_0975" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.813) with cleavage site probability 0.649 at residue 26" gene 1066185..1066760 /locus_tag="Dhaf_0976" /db_xref="GeneID:7257944" CDS 1066185..1066760 /locus_tag="Dhaf_0976" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457472.1" /db_xref="GI:219667037" /db_xref="GeneID:7257944" /translation="MHLQAGVKGLIYLAIVSVMLGGLLALTTCFVLDDPPIRGSQPFI IETGIEEQGPVLRLLTPNGEKKFELFDGEFADGTKIFGSSVYKWKSDKWTFAHMGQQP YKPEDPVRMSSLDCFGILEVIDPEIIIVEYETDTEKKLLSIAEVNSRRFVAFQTEPGN KDYYQIRCKSKDGEVLWQLFHDNYWGRESSG" gene 1066896..1067081 /locus_tag="Dhaf_0977" /db_xref="GeneID:7257945" CDS 1066896..1067081 /locus_tag="Dhaf_0977" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457473.1" /db_xref="GI:219667038" /db_xref="GeneID:7257945" /translation="MIGAKAAVEERCGMLLRKTMPDEKDAKEKTGLKAGSIPPLAFYP VVLAGNPADCRRYDYLN" repeat_region complement(1067079..1068647) /note="IS element" gene complement(1067153..1068511) /locus_tag="Dhaf_0978" /db_xref="GeneID:7257946" CDS complement(1067153..1068511) /locus_tag="Dhaf_0978" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002457474.1" /db_xref="GI:219667039" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7257946" /translation="MFNIRQERLFSLEEILETSPRDSYSLILGSLDIIPLLNAVSKKA IFGAPTQLNYSAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKT VVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIEDQLPYSFTELVQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHP YLNPSHILADAGYDYAPIYEQARSIGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSY RYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSM AA" gene 1068714..1069235 /locus_tag="Dhaf_0979" /db_xref="GeneID:7257947" CDS 1068714..1069235 /locus_tag="Dhaf_0979" /inference="similar to AA sequence:KEGG:Cthe_0702" /note="KEGG: cth:Cthe_0702 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457475.1" /db_xref="GI:219667040" /db_xref="GeneID:7257947" /translation="MKKIVAFAVMIIALLLSGCSTKEITSENSVIGADYLKDKGYEII AYEGNAENYILTKEKLMSMPYMIYWGLQREDPSKHLGKEVYVEKFIIKNHPFDNWQST SRYPENIVKSKGETRVWVYIADKEVVGGISYPAIDEPMAGGYWSLDGKTLEEVHSINY SDWLEQWQNKFDY" sig_peptide 1068714..1068782 /locus_tag="Dhaf_0979" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.680 at residue 23" gene 1069420..1069767 /locus_tag="Dhaf_0980" /db_xref="GeneID:7257948" CDS 1069420..1069767 /locus_tag="Dhaf_0980" /inference="similar to AA sequence:KEGG:Cbei_4368" /note="KEGG: cbe:Cbei_4368 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457476.1" /db_xref="GI:219667041" /db_xref="GeneID:7257948" /translation="MRRVRVKPSKSQSFVGMIGGAVFVIIGFSIIPMMGMFGIFWTIM AMAIAGMHAYNYFTDKGVASWEIDVEPNHQGINREEDFEAKLRKLNRLKEDGLITDSE FAKKRADIMKSEW" sig_peptide 1069420..1069563 /locus_tag="Dhaf_0980" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.805) with cleavage site probability 0.513 at residue 48" gene 1069887..1070552 /locus_tag="Dhaf_0981" /db_xref="GeneID:7257949" CDS 1069887..1070552 /locus_tag="Dhaf_0981" /inference="protein motif:PFAM:PF08241" /note="PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dps:DP2762 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002457477.1" /db_xref="GI:219667042" /db_xref="InterPro:IPR003333" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7257949" /translation="MDKTERTIETYDLHASLYEEKFMNFPGYAKRIQSFGRILAAGAK VLDLGCGPGNVAKQLVELDKEFEVLGIDLSSEMIRHAKVNVISPCVEFRVGDIRNMDL EENAFDAVIASFCLPHLTDEEAGTFIQDISKVLREGGLLYLSCMEGCRSGFETTSFSS NDFIFFNYYSEEFISNVLCTNGLKINEVQRDEYLESDGSKTNDMFFLAKKQCVTGDGP EHI" gene 1070630..1070791 /locus_tag="Dhaf_0982" /db_xref="GeneID:7257950" CDS 1070630..1070791 /locus_tag="Dhaf_0982" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bha:BH3694 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457478.1" /db_xref="GI:219667043" /db_xref="GeneID:7257950" /translation="MPEIILIIYLAFFAFIIFFMISIINFMKRKTQNDELIIIKIEEL IDKLPGKDS" gene 1070874..1071770 /locus_tag="Dhaf_0983" /db_xref="GeneID:7257951" CDS 1070874..1071770 /locus_tag="Dhaf_0983" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_2121 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457479.1" /db_xref="GI:219667044" /db_xref="GeneID:7257951" /translation="MQRKVFSIVLGIILMFTVMPMAVYADIGPKPSVVIDFKGLEDEK YYVTLLSEIASTGPHSALGEHPGNQRYHEGDEDYEIWEKLLSYQDKDGYYFLQYFGEC SETAQFTWGYYPPPKFKILIYFPAYDQFAVSGEAYERYAFHSYYSTDVKGLELESITP IENIEAVRNYDYTWELISLLARIIATVAIEVLIALLFGFRAKKQLLLIGTVNVVTQSI LNILLNVINYNQGSMMFVFNYIWMEFLVFVIEAGVYSALLPKYSGKDLKRRWLIPFYA LVANAVSFGLGLYMAYLIPGIF" sig_peptide 1070874..1070951 /locus_tag="Dhaf_0983" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 26" gene 1071849..1072256 /locus_tag="Dhaf_0984" /db_xref="GeneID:7257952" CDS 1071849..1072256 /locus_tag="Dhaf_0984" /inference="similar to AA sequence:KEGG:THEYE_A0839" /note="KEGG: tye:THEYE_A0839 molybdopterin converting factor, subunit 2" /codon_start=1 /transl_table=11 /product="molybdopterin converting factor, subunit 2" /protein_id="YP_002457480.1" /db_xref="GI:219667045" /db_xref="GeneID:7257952" /translation="MINGKMKKTPPSIDEWLKEAKADPAAVQEGMFLVHNGVVRQTPK AKVRQGIDDGSMVKGMEFAYDAAKVDEVIAETYKMDGIFHVRVWLNEGQLELGDDIMV VLIGGDIRPHVVDALQYLVGRIKNECVTEIERK" gene 1072277..1073347 /locus_tag="Dhaf_0985" /db_xref="GeneID:7257953" CDS 1072277..1073347 /locus_tag="Dhaf_0985" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rci:RRC180 2(4Fe-4S) ferredoxin-domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457481.1" /db_xref="GI:219667046" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257953" /translation="MDYKSLLINFMSGTGNSFRAAAWMTKMGKQRGIRSELYPIARCR EESDVDKGSGELLGVVFPTHGFTAPWHVIRYALRLPLGRGKHAFVVATRAGSRIASIP FPGMEGTAGYLIALILILKGYSVRGVMGLDMPSNWIALHWGLNSVNSGFIIDRAKAKA DAFINSILEGKKGFRGIVPLILGLMLSPVSLGYLIIGRFFLSKLFFASGDCTGCGLCA ESCPVKAIKMVGNNKPRPYWTFACESCMRCMGYCPNQAVEVSHPFAVILYFLATLPVS VYILNELGESAPMGPYLFVVSALLNYSYILFVFFIANLVLFLLIQIPLLNKLCTYTTL THIYRRYHEPDTKLGDMLKKQV" gene 1073362..1074015 /locus_tag="Dhaf_0986" /db_xref="GeneID:7257954" CDS 1073362..1074015 /locus_tag="Dhaf_0986" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpy:Cphy_1942 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457482.1" /db_xref="GI:219667047" /db_xref="GeneID:7257954" /translation="MRYLKKMNLFKKIVLFLLSTVIAFNIALQLVLTLSGAGLTVLDI YAQTLPREDTKAINYSPGYFMETKSYFEKQEKGQCAGFSSAYVLRVLGEEISGRDNYQ ELGHKFSNGYVMPQALIDIFEKYNYQVNMFSGNLEQLKTRLNQGKPVIVLIGHFVSWQ HYVTVVGYDEDTIFLYDSNMDTDNSRGYNRTMTNEEFLSQWKNEIPFFEQIYFVVEQ" sig_peptide 1073362..1073451 /locus_tag="Dhaf_0986" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.392 at residue 30" gene 1074029..1074394 /locus_tag="Dhaf_0987" /db_xref="GeneID:7257955" CDS 1074029..1074394 /locus_tag="Dhaf_0987" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457483.1" /db_xref="GI:219667048" /db_xref="GeneID:7257955" /translation="MKVFMGSFQSLNRIGRVGIFIGIAATVSGIIVFILWALWAIQYT FNETIPIIFIGFGLPVILGLVASFYGIIRLMYGVFVYSLPLSLYAAMTPSVLRFFLLV SLGYLASAILLTLDRKVRR" gene 1074436..1074957 /locus_tag="Dhaf_0988" /db_xref="GeneID:7257956" CDS 1074436..1074957 /locus_tag="Dhaf_0988" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457484.1" /db_xref="GI:219667049" /db_xref="GeneID:7257956" /translation="MKKAVKYTGIVAVMIAGLFLSLYFNNAIGTPKAKIEKDARISHK IDSSWQVAKSTTDAMSAMLFYDKDSSNYIFSIYENRKGLSFGYFFRSGGSTNTENEGI TEYRAEGRQEKAYLSMNKQQVAKIEIDNGNTVEIIDIDHTKPFAIVLPVGSGAIKIYD KDGSVLPTIPQAL" sig_peptide 1074436..1074525 /locus_tag="Dhaf_0988" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.774) with cleavage site probability 0.651 at residue 30" gene 1075019..1075522 /locus_tag="Dhaf_0989" /db_xref="GeneID:7257957" CDS 1075019..1075522 /locus_tag="Dhaf_0989" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457485.1" /db_xref="GI:219667050" /db_xref="GeneID:7257957" /translation="MNLKSNLKSFIILALLLQLIIIMLILKSGVTMLVLAVGSLVLAM LLSVNRAFYERFSAFLNPGFYRSCGEKGSSLYRKKRRYSTMNFYILAILALNGYRVSM LDSAPGLLSGINQFISFALVAFVLLFIIVFFSIILIKSSDEDLLWNMFMGILFIALSF IVYFSFL" sig_peptide 1075019..1075150 /locus_tag="Dhaf_0989" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.822 at residue 44" gene 1075696..1076217 /locus_tag="Dhaf_0990" /db_xref="GeneID:7257958" CDS 1075696..1076217 /locus_tag="Dhaf_0990" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: cpy:Cphy_1536 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_002457486.1" /db_xref="GI:219667051" /db_xref="InterPro:IPR000086" /db_xref="GeneID:7257958" /translation="MTELWDIYDKNRTLTGRTMERGSQFAKGDYHLVIHVCIFNSKNE LLIQKRQPWKKGWPNMWDITVGGSALAGETSAEAAERETFEEIGYKIDLSAERPFFTV NFERGFDDYYLVERDIDINGLCLQYEEVQCVKWASKDEIMQLIEEGQFIGYWFMEQLF DIRKHRAGYRFTG" gene 1076228..1076794 /locus_tag="Dhaf_0991" /db_xref="GeneID:7257959" CDS 1076228..1076794 /locus_tag="Dhaf_0991" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_0378 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457487.1" /db_xref="GI:219667052" /db_xref="GeneID:7257959" /translation="MMKNYIIVCLVCFLVLLAGGVTVVQQSSSLEFAFDNRGQYTGFN SIPSRYTPEMAQNAGYYVMSDSEVVANGGLWDDFLAASSQGKNTSLRMAKFYSEYGNS PFFADLFYNEGYYYLFDSSAKDLSGRPFKHLLTLKGKFGNPLRDSGVVVLANDNSLTF DLIMSGMVSSNLEYIKSIPEYQLIMFLI" sig_peptide 1076228..1076299 /locus_tag="Dhaf_0991" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.295 at residue 24" gene 1076999..1078600 /locus_tag="Dhaf_0992" /db_xref="GeneID:7257960" CDS 1076999..1078600 /locus_tag="Dhaf_0992" /inference="similar to AA sequence:KEGG:SPG_1476" /note="KEGG: spx:SPG_1476 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457488.1" /db_xref="GI:219667053" /db_xref="GeneID:7257960" /translation="MRNSKGKLILAAIWIAFTLISYYFALVPINLQSPGFWVFLIYVL GVGAGLFLLHQVFVEKRLTLTKHIGSYLVMATLLVTIVGGIMLLYSLPVFHAKAYANL IDKQEGDFAKDVEELPINQIPTVDRDTALRLGDRKMGEIVELVSQFNVAPDYTQINYQ GKPVRVSPLEYADFFKWLSNTKEGLPSYIRVDMVTGNVELVTPEQSIKYSESELFFEN VRRYLRMHYPMAIFGDFSFEVDEQGVPYWIVSVRHNTIGLFGGTDIKEAIMLNATTGE HQKLKLEEVPEWVDRVYDADLVVGQVNYNGRYQNGFINSIFGQKGVLATTEGYNYLAL HDDVYLYTGITSVVRDESNIGFILINMRTKETTFYGIPSAEEYSAMGSAQGAVQEKGY VSTFPLLLNIEGNPVYFMSLKDAAGLIKMYALVDAQNYQKVVVGNTLEEALRAFTGRS GTVTETTPEEPKEEFDIQGKITDIQNVVMDGNTYFYILLDGRSDIFVASIKVSEKLPF LKIGDEIQGRYVEKYKGVHEIMRLQ" sig_peptide 1076999..1077076 /locus_tag="Dhaf_0992" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.815) with cleavage site probability 0.791 at residue 26" gene complement(1078757..1080610) /locus_tag="Dhaf_0993" /db_xref="GeneID:7257961" CDS complement(1078757..1080610) /locus_tag="Dhaf_0993" /EC_number="6.3.5.4" /inference="protein motif:TFAM:TIGR01536" /note="KEGG: bcy:Bcer98_0872 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase" /codon_start=1 /transl_table=11 /product="asparagine synthase (glutamine-hydrolyzing)" /protein_id="YP_002457489.1" /db_xref="GI:219667054" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001962" /db_xref="InterPro:IPR006426" /db_xref="GeneID:7257961" /translation="MCSILGLVNFKRKISPQEIQCLSTMGKTLIHRGPDQNGLEYGEH FAFQHNRLAIIDIEKGRQPMTATHQGYDYTIVYNGELYNTADLRQELLEHGVKFKTYC DTEVVLYAYIIWGEQCSSKLNGIYAFVIYDSKEKKTYLSRDRFGVKPFFYTFVEGALL FASEIKALLKHPQVKPRLDYQGLWQLLYMMPVKEEGTAIFKDIFELPTASHAFYSLAP GASEAELKIAKYWTMEAYENQDSEAAIVATTRDLLVDAIERQLVSDVPLCTFLSGGLD SSIITAVAAQKYQAEGRQLATYSFEHEGNKDHFKQTLFQPQSDDEFAVYLAQHLHTQH QILTAKKEHLVDYLDEAVRYRDYPGMADIDSSLLFYCRQVKEHHTVALSGECSDEVFG GYPWFYRPEMLTRGFFPWIHEPHARISLFKPELVRPQEGFAYTSEIYRRSVEACPLLP DESETMQNSRIASWLSINYFMTSLLERKDRMSMASGLEVRVPFSDHRLVQYVYNVPWE IKFKDGVEKALLRAAMQDYLPPKILYRKKSPFPKTHDPHYEELVFHLFRKRLDSGSGM LAELLQKDVLNRLISPGNNTWFGQLMGLPQLLAWLVQLDYWFEAYQVQLVG" gene 1080978..1082306 /locus_tag="Dhaf_0994" /db_xref="GeneID:7257962" CDS 1080978..1082306 /locus_tag="Dhaf_0994" /EC_number="6.3.1.2" /inference="protein motif:TFAM:TIGR00653" /note="KEGG: chy:CHY_0704 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp" /codon_start=1 /transl_table=11 /product="glutamine synthetase, type I" /protein_id="YP_002457490.1" /db_xref="GI:219667055" /db_xref="InterPro:IPR004809" /db_xref="InterPro:IPR008146" /db_xref="InterPro:IPR008147" /db_xref="GeneID:7257962" /translation="MGFTKEECLKYVQENDVRFIRMQFTDIFGQMKNIAITHNQLAQA LDEGVLFDGSAIKGFAGVEASDMLLLPDPSTFTLIPWRPQQGKVARIICDVKNHDGSQ FEGDPRYILKRTLQKAHDLGYVFQVGPECEFFLFHTDEEGQPTTITHDAAGYCDLAPI DQGENTRREICLVLEEMGFEIETSHHESAAGQHEIDFKYTDALTAADHIMTFKYVVKI VSQRNGLHATFMPKPLHGVNGSGMHINMSLAKEGRNVFIHPENPGELSETAKQFIAGL LEHIKGITAVANPLVNSYKRLTPGYEAPVHIAWSPMNRSPLLRVPSPRGAGTRLELRS PDPSCNPYLTLALLLEAGLDGLQREMKVPEPVNENIYNLTPEQEKALSLERLPSNLLL ALEEMEKDPLIQATLGRHIFTKYIAAKAREWKAYDEMVHQWEIDSYLKIY" gene 1082339..1082911 /locus_tag="Dhaf_0995" /db_xref="GeneID:7257963" CDS 1082339..1082911 /locus_tag="Dhaf_0995" /inference="protein motif:PFAM:PF03861" /note="PFAM: ANTAR domain protein; KEGG: cth:Cthe_0203 response regulator receiver/ANTAR domain-containing protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and ANTAR domain protein" /protein_id="YP_002457491.1" /db_xref="GI:219667056" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR005561" /db_xref="GeneID:7257963" /translation="MSAGNVLIVCGKSEVAGSMESTLIKEGYHPVNCAHSANEARRQF FIVQPDLIIVSTPLPDEQGIDFVFDAYEKTSAGIIVMARPEQVSHMQDALESTGAMIL PKPLNRLTLIQSARFALSVRSSLDQLRSERDNLKKRMDERKLIEQAKWLLVEKLNMSE PEAFRYIQKKAMDLRLPQLQIAEDIINEHA" gene complement(1082991..1084355) /locus_tag="Dhaf_0996" /db_xref="GeneID:7257964" CDS complement(1082991..1084355) /locus_tag="Dhaf_0996" /inference="protein motif:PFAM:PF02906" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: drm:Dred_1794 hydrogenase large subunit" /codon_start=1 /transl_table=11 /product="hydrogenase large subunit domain protein" /protein_id="YP_002457492.1" /db_xref="GI:219667057" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR004108" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257964" /translation="MAQSEIMKIRRQVLKSALDWVSHDQNRKDRATLARQIIPDGTPR YRCCIHKERAVIEERLKAVLEPDEGPIVRVLKEGCNGCEMHRYSVTDHCQNCVGHFCF TNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVRED RIASIAEAHCTSCGKCIISCPFGAVAESSQLIHLFEAVRNPEHKIYAVIAPAFVGQFG RKVSPGQVKSALLKLGFQDVLEAALGADRTIELEAREYDERLAHGEEFMTSSCCPAYV SAVIKEKPDLFHHISSTLSPMAQVAHILKEKDPEAKIAFIGPCVAKKEEGKRPETKVD FVLTFEELMVWLDYAGINPAEESEQTLAGPSSYARGFAKAGGVAAALTAYLGQDSPPT YQTEGIQNSLKALETHVKNGDKGFLECMACEGGCINGPWTMIARPIAERALKEFVQST AAQQ" gene complement(1084628..1084963) /locus_tag="Dhaf_0997" /db_xref="GeneID:7257965" CDS complement(1084628..1084963) /locus_tag="Dhaf_0997" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457493.1" /db_xref="GI:219667058" /db_xref="GeneID:7257965" /translation="MSKSLGDLKNNLVVKYTIGLMMKGQGTDMLRTELDCDVCGETCL AWEVHQIPYYPEGKLADNYEPGYTMMACEKCIEAKQIVPLDTDASVRFDASNLAIKEI LETRKNQQQ" gene complement(1085175..1085723) /locus_tag="Dhaf_0998" /db_xref="GeneID:7257966" CDS complement(1085175..1085723) /locus_tag="Dhaf_0998" /inference="protein motif:PFAM:PF02632" /note="PFAM: BioY protein; KEGG: pth:PTH_0256 hypothetical protein" /codon_start=1 /transl_table=11 /product="BioY protein" /protein_id="YP_002457494.1" /db_xref="GI:219667059" /db_xref="InterPro:IPR003784" /db_xref="GeneID:7257966" /translation="MNAQHLAKTAAMAALLCLAGMIMRWASPALVPFSVLPVFVFLTG LILGPKYGSLAVIVYVFLGLLGLPVFASAPFGGIGYVLKPSFGYLLGDIAAAYTVGKL YNRQSLLSALLAVLGGIIVLYLIGLAYFYLVMHFILHQSTTMALVISMGFLPFIAGDL IKGGIAAWVGNQLIKRQRSSSL" sig_peptide complement(1085175..1085255) /locus_tag="Dhaf_0998" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.996 at residue 27" gene 1085896..1087383 /locus_tag="Dhaf_0999" /db_xref="GeneID:7257967" CDS 1085896..1087383 /locus_tag="Dhaf_0999" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpd:Teth39_0880 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457495.1" /db_xref="GI:219667060" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7257967" /translation="MMKSLEGKAISLGIIQGIDFSLRQGEVIALMGPNGAGKSTLARL LAGLNEPASGKLNLLEGGQEIPWTRVRRWQEIGIIGQHPRRQTIGATVGEELGFGLLN LGYEVKKVQDMVRELAYRMGLEGKLHQSPATLSGGERQRLVLGAILALNPAFLLLDEA LSMLDRRAQEACLELLEEKGKHMGQLWITHDPLLAEKADRLWVMKEGKLSTMGRPQTA LRDERFCQEYGIRAPYSPSYSPGYSSVREKMGEKYQAESPFLHGDGRKDTLEWREAEY GQRLQLTEKIKEGCFLAVLGPSGAGKSTLLESAVGLIHPSRGKFLAFGQEVTRQTKQW QKARLLLQEPGEYIIGGTVYDEVFYLQNKKERKAGAQRNIEYLQVFGIPPEKALAYPE YLSGGERQRVALAAALESLPEILLLDEPLLGLDLAGRSMMLELLQELKGRMTILYITH DWSEVRELADEVWLVEKGRITFKQRSKDGAMEIDDQQLKEAGVHC" gene 1087377..1088159 /locus_tag="Dhaf_1000" /db_xref="GeneID:7257968" CDS 1087377..1088159 /locus_tag="Dhaf_1000" /inference="protein motif:PFAM:PF02361" /note="PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_002457496.1" /db_xref="GI:219667061" /db_xref="InterPro:IPR003339" /db_xref="GeneID:7257968" /translation="MLERGLYHPGESILHKLDPRLKIGSLVILGLLMTTVNWGGLLCL TGGLFIMLGYSPLPIKAFQSVIKAGVVLGLFYTLIMGWHWQEGWFFWKGYWSMAGVLQ GLMMSWRILLVFLLTRMFSAFTLPSEQGIGIAFFLAPFYRITPKAADFALLITLTLRF IPLLLEEAALLYKARLAKGNLPGQWIGKIKDLAALLLPLLRIALRRAEELAENLVARG YVSGGYRVLGTKEWESKDSWGAVVLILWSIGTLVIELGLKIW" gene 1088333..1089100 /locus_tag="Dhaf_1001" /db_xref="GeneID:7257969" CDS 1088333..1089100 /locus_tag="Dhaf_1001" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mta:Moth_1019 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457497.1" /db_xref="GI:219667062" /db_xref="GeneID:7257969" /translation="MAALILSGCASQNYPENVVAVINGETITQEEIDEAINEGKLHID LTEALRLLNGENSMSQRDAMLQAFGVDEGNMTSGQKRFFEGIERSSAKIPTANDALNS LLVEEVLYQEAVKQGHEASIDRVKQILEESKRINLEAMSQDEEALREYNEYVEKTASI YHQYGFTSEEDYLSKRMDRTAQAMAINTMNYEFDKVMADKLPGVDSAQIERGNAWEDY GEYLLSKAKVKILKPEYQIQHYGESWSHGRLNLKAKP" gene 1089129..1089716 /locus_tag="Dhaf_1002" /db_xref="GeneID:7257970" CDS 1089129..1089716 /locus_tag="Dhaf_1002" /inference="protein motif:PFAM:PF05685" /note="PFAM: protein of unknown function DUF820; KEGG: gur:Gura_3383 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF820" /protein_id="YP_002457498.1" /db_xref="GI:219667063" /db_xref="InterPro:IPR008538" /db_xref="GeneID:7257970" /translation="MSTDQQPDENNLRYTYKDYLTWAKTQPGEIFNGVPYGRSPAPPS HYLEVLGELYMAFALYLREKPGKVFLFPFDVRLPADTDQKDEDIATVVQPDLTVVCDL SKVDKGGCKGAPDLIIEILAEDTMHRDLHLKLRLYEKAGVPEYWVVHPADQTVLAFQL EEGAYAAPQFYRASDQIPVGLFPDLLISLAEIFRG" gene complement(1089893..1091140) /locus_tag="Dhaf_1003" /db_xref="GeneID:7257971" CDS complement(1089893..1091140) /locus_tag="Dhaf_1003" /inference="protein motif:TFAM:TIGR02079" /note="catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="YP_002457499.1" /db_xref="GI:219667064" /db_xref="InterPro:IPR000634" /db_xref="InterPro:IPR001721" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR011820" /db_xref="GeneID:7257971" /translation="MGKVVLEDILRAGQTLKGVINKTPLHRHDLLSEKYQCNIFLKRE DLQVVRSFKLRGAYNMVHSIPSERLSSGVVCASAGNHAQGVAYSCKALGIKGSIYVPS TTPKQKISSIKRFGGDFVEVIQIGDTFDDAFNRAKAHCEEANKTFVHPFDDPLVIAGQ GTIAMEILNDMEAPVDYILGGIGGGGLMSGVGIAMKSLSPQTQVIGVEATGAASMKEA FSQGEIVTLPHIDGFVDGTAVKRVGDLTFAICREVLDDVIAVTEGKVCTTILEMYNDS AIVVEPAGALSIAALETYKDKIKGKNVVCIISGGNNDIERTPEIKERSLFDQGLKHYF IVNFPQRPGALKEFVGEVLGPNDDIARFEYTKSNNKEKGPTLIGIELSRKEDYQPLIE RMDKKGFQYTRINDNPELFGLLI" gene 1091530..1091853 /locus_tag="Dhaf_1004" /db_xref="GeneID:7257972" CDS 1091530..1091853 /locus_tag="Dhaf_1004" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457500.1" /db_xref="GI:219667065" /db_xref="GeneID:7257972" /translation="MPWLYRIVWSLAIIFFILAVVVFSIWAVLIGAVVYALYRVYLYF AQKKGIGYGKAGQSQRVHFKVYTNYKGPGQPGDQHSPRGFTNGEVIDMPVEEVTDSRN SFPKE" sig_peptide 1091530..1091613 /locus_tag="Dhaf_1004" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.899) with cleavage site probability 0.614 at residue 28" gene 1091976..1092659 /locus_tag="Dhaf_1005" /db_xref="GeneID:7257973" CDS 1091976..1092659 /locus_tag="Dhaf_1005" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pth:PTH_0035 response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002457501.1" /db_xref="GI:219667066" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7257973" /translation="MQKLKGIKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVT LAKQLHPHLVILDIMMPGMDGFEVCRMLKKSENVSIIMLTAKDEVEDRVKGLTIGADD YMAKPFSFEELLARIHARIRNQFPTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEY ELLKFLILNQGLVLSKTMILDKVWGYDFAGDDNIVEVYIRSLREKLGDKEHRLIRTLR GSGYRMDLI" gene 1092656..1094167 /locus_tag="Dhaf_1006" /db_xref="GeneID:7257974" CDS 1092656..1094167 /locus_tag="Dhaf_1006" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pth:PTH_0036 membrane-associated sensory histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457502.1" /db_xref="GI:219667067" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR008358" /db_xref="GeneID:7257974" /translation="MKKGASIHKIVTPNSLRFQLLSRSLFFLAIILLLIGIFQYVFLK DFILGSTAASIRSQIASVPRDSWTQMLLYAEINAKFNLDKDIVELVPGKTQEGPPNRI PINLMDSTIAFVDLNGNVTSLANTMNRSGAPPLLSADQYQQALDPSESPRFWVVNSES GTELLVVLHPLELRGYLVGFIQVSLSTQFVQDVLFRQLSIFMLLSVLALVGGLVAYQA VIKKTLVPLSNIVHTMENMDAGNLNERLPVEQGQKEIDTLAVSLNGMLERLESSFTAE KEAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAMNQPDKLQKSLTSMYAESERMK KLIQDLLLLAKLDRSPYLEKSEKDIGVLILEMEPQLRMLAEEREIQLDLAPEELVPID VDKMKQVILNLFHNAVQHTDPDKGLIQISLKSEASGVELTVQDNGPGIPEEHLPHLFE RFYRSDSSRTRKYGGAGLGLAITHSLVELHGGTLRVESKVGEGSRFIVGLPKI" sig_peptide 1092656..1092787 /locus_tag="Dhaf_1006" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.765) with cleavage site probability 0.754 at residue 44" gene 1094502..1095839 /locus_tag="Dhaf_1007" /db_xref="GeneID:7257975" CDS 1094502..1095839 /locus_tag="Dhaf_1007" /inference="protein motif:PFAM:PF01391" /note="PFAM: Collagen triple helix repeat; KEGG: ckl:CKL_2427 hypothetical protein" /codon_start=1 /transl_table=11 /product="Collagen triple helix repeat protein" /protein_id="YP_002457503.1" /db_xref="GI:219667068" /db_xref="InterPro:IPR008160" /db_xref="GeneID:7257975" /translation="MAELTTGLIDNFPVDGARPSVSVALRITNDGDSTETVTITGYYL NGTIKEVYVLELVTVNPNEVIIREYYANLDAFEFVFSTSSETVVISVWGKDAEGNLVD AHRVLPAELDSLEPIIVPTGPTGETGATGATGATGPTGATGTTGATGEAGATGATGET GATGATGETGATGATGETGATGATGETGATGATGETGATGATGETGATGATGETGATG PAGETGATGATGETGATGATGEIGATGATGETGATGATGETGATGATGETGATGATGE TGATGATGETGATGATGETGETGPTGPTGEVVLAFGSLRGSSAEAPGATFTPVPFSIV GPLSDTITVSLSGNELVVGESGIYQITISINAQATTDPDPDDPYLEAIITVNGSPIFG DTTTFFKIFNRSSSTFVVQASLTAGDEVGVSASTDFPILGYINRSLTVVQLSN" gene 1096123..1097265 /locus_tag="Dhaf_1008" /db_xref="GeneID:7257976" CDS 1096123..1097265 /locus_tag="Dhaf_1008" /inference="protein motif:PFAM:PF01391" /note="PFAM: Collagen triple helix repeat; KEGG: bpu:BPUM_1804 triple helix repeat-containing collagen" /codon_start=1 /transl_table=11 /product="Collagen triple helix repeat protein" /protein_id="YP_002457504.1" /db_xref="GI:219667069" /db_xref="InterPro:IPR008160" /db_xref="GeneID:7257976" /translation="MAELTTGLIDNFPVNGARPSVSVALRITNDGDSTETVRITGYYP NGSFKEVYVLEIVNVNPNEVITREYFADLDAFEFVFSTSSETVAISVWGKDAEGNLVD AHRVLPAELDSLEPIIGPTGETGATGATGETGATGPTGETGATGATGETGATGATGET GATGATGETGATGATGETGATGATGETGATGATGETGATGATGETGATGATGETGATG ATGETGPTGPTGSTGPTGGAGSLSGLQVQLQGSSGGTVANNANVLFDTTINAPSANIT YNAGTGTFFINQPGNYYISWWVNTDGAEAEPTVSFGIRVISGGSQTILSSSPSPMVTL QLNGNALLTVTTTPLVFNLFNNSGATVSYGTSAVQADLTIVEVASL" gene 1097369..1097773 /locus_tag="Dhaf_1009" /db_xref="GeneID:7257977" CDS 1097369..1097773 /locus_tag="Dhaf_1009" /inference="protein motif:PFAM:PF01814" /note="PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0362 hypothetical protein" /codon_start=1 /transl_table=11 /product="Hemerythrin HHE cation binding domain protein" /protein_id="YP_002457505.1" /db_xref="GI:219667070" /db_xref="InterPro:IPR012312" /db_xref="GeneID:7257977" /translation="MNNDLLKNQHHTIRQLIQEIEEEVHSGNLGQKAFDLSLKISKLS GILVLHLKSEDEYLYPALKKSKDEALSKTAEQLCREMGSLSTEFLKYKSTYMSAAKIK ADIPQFIGESNKIFSALKNRLNTEDKRLYQHI" gene 1097901..1098152 /locus_tag="Dhaf_1010" /db_xref="GeneID:7257978" CDS 1097901..1098152 /locus_tag="Dhaf_1010" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457506.1" /db_xref="GI:219667071" /db_xref="GeneID:7257978" /translation="MMNNSRARTENHEQVFVSVNQKKLDVFSALIAFFLVWKAYWWVF HLISPQDTIIDILALFGVIILVIPCSVILQLKIRSFMKK" gene complement(1098228..1102571) /locus_tag="Dhaf_1011" /db_xref="GeneID:7257979" CDS complement(1098228..1102571) /locus_tag="Dhaf_1011" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR01405" /note="KEGG: cac:CAC3442 DNA polymerase III (alpha subunit); TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease" /codon_start=1 /transl_table=11 /product="DNA polymerase III, alpha subunit" /protein_id="YP_002457507.1" /db_xref="GI:219667072" /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR006054" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR006308" /db_xref="InterPro:IPR011708" /db_xref="InterPro:IPR013520" /db_xref="GeneID:7257979" /translation="MKRVQEIFRNFEAGVSLNTAIVKAVVLKEKSKTLEMKISSDNYI EVSDLESLNQFIREQLTLEDSEIIVEYSEGTPKKPIEEELKKIISLLARKHPLLKSAL NNCDFDITDQSIQLTFKIAVSYLLKGKGYDKIIQEAIKNLYGAHYTVHFADKVNPEDL VRLQEATQEKELQLIQKERLAVPPSPTPAERPKEAAPVPAESKADDGKKSDPQLILGR NAAIKDKVIKVTDITPDEGKIALQGELSNIEAKELKSGKTLVSFDLYDGSSSITCKSF LKPGEDSEVVSRLQKAKGVKLSGNAGFSKFSGEIEVIAHTIVETEGVKKYIRQDLAKA KRVELHLHTQMSQMDAMSGATDLIKRAMNWGMKAIAITDHGVVQSFPEAHKLLGRDNP NMKVIYGVEAYLAPDKKPSVTHPKGQSIDTTYCVLDLETTGFSAATEKITEIGIMKIQ GGKIIDQFGCFVNPEKPIPARVVEVTNITDDMVRDAETIDQVFPKILNFIEGSVLVAH NADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAH RALDDVGTTVKVFNIMVDMLKERGVETLEDIDLKAADEAARKDEYKKLKTYHAIILAK DYTGLKNLYKLVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELYQAILLGRS EEEIESIAEEYDYLEIQPLGNNDYLIRTEQVPGKDYLMEINRKIVALGEKLNKPVVAT GDVHFLDPEDEIYRRILEAGQGFKDADQQPPLYLKTTEEMLEEFSYLGEDKAYEVVVT NTNLIADLCEPISPISSEKATPHIEGCEETIKEIAFGKAHELYGNPLPDIVQQRLDRE LDSIIKNGFSVMYIIAQKLVWKSNEDGYLVGSRGSVGSSVAAYMTGITEVNALPPHYR CPSCKYSDFSDHGPKIGFDLPDRECPVCGTQLDKDGIDIPFETFLGFNGDKEPDIDLN FSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIADKTAFGYVRKYFEEKNRTANKAEIIR ISKGCTGIKRTSGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSIDQN LLKLDILGHDDPTVIRMLQDITGVDPKTIPMDDKKTMSLFSSTEALGVTPEQINSKVG TFGIPEFGTRFVRGMLLDTLPKAFEDLICISGLSHGTDVWLGNAKDLIDAGTVTLSEA VCTRDEIMTYLIRKGLPPNTAFKIMEIVRKGKALKEPKWPEYETLMREHDVPEWYIDS CRKIKYMFPKAHAAAYVMMAFRIAWFKVHIPLAYYAAYFTIRAKAFDAEFMIFGKEKV KAKMKEIEALGNQAAPKDKDMYDDLEIVLEMYERGFSFLPIDIYASHATKFQVEGNAL RPPLNSISGMGTIAAEGLYNAAQEKPFNSLEDVKKRGKIGNSTMELLSKFDCLKGIPE SDQISFFDLIS" gene 1103103..1104776 /locus_tag="Dhaf_1012" /db_xref="GeneID:7257980" CDS 1103103..1104776 /locus_tag="Dhaf_1012" /inference="protein motif:PFAM:PF00682" /note="PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: ckl:CKL_0047 LeuA1" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_002457508.1" /db_xref="GI:219667073" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="InterPro:IPR013709" /db_xref="GeneID:7257980" /translation="MKNVDNYRRGYFMPPVKSLKWAEKEYITTPPTWCSVDLRDGNQA LVVPMSLEEKLEYYHMLLKIGFKEIEVGFPAASETEYAFLRTLIEQNLIPEDVTIQVL TQSRDHIIEKTFKALVGVKKAVVHLYNSTSVAQREQVFKMSREEIVEIAVSGARLLKK YAAETEGNFQFEYSPESFTGTEMEFALEICNQVLDVFEPTPENKVIINLPATVSLSMP HVYASQIEYMSEHLKYRDNVILSLHPHNDRGTAVADAELGLLAGGQRIEGTLFGNGER TGNVDIVTLALNLFSHGVDPGLNFASMLEITAKYEALTRMKVHDRQPYGGKLVFAAFS GSHQDAITKGIKWREEHECHYWNVPYLLIDPQDIGREYEGDVIRINSQSGKGGIAYML EQHYALDLPAKMREAFGYKVKNVSDNLHKELMPEEIKDIFFKEYVNIENPIKFLNFHF LNHDDFQTTVTLEFKGEIQELSGEGDGRLDAISNALQARLGLSYSNLIYKEHALELGS KSQAVSYVGVTGPDGVIHWGCGIHTDIFTSSVKALISAINTMIKDSAAV" gene 1104856..1105824 /locus_tag="Dhaf_1013" /db_xref="GeneID:7257981" CDS 1104856..1105824 /locus_tag="Dhaf_1013" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00790 zinc metallohydrolase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002457509.1" /db_xref="GI:219667074" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7257981" /translation="MIREIYPHIYLNEIPLPHNPLKTLNSYIVLSGDRPLILDTGFDL EVCKAAFMEGVEELQIDLQKTDLVLSHMHVDHTGLADFLAERGCQVYIGEKDGILLNN YRTSPGLIMGELNKVLNLGQEMNSTEKAVFDITPKKPLAYTPLNEGDCLETGLYQWEV INIPGHSPGHIGLYERRHKLFLGGDHILNEITPNITFFHYKIDSLGNFIRSLEKIRGY DIEQVFPAHRSLIANHRQRIDELIAHHQERLVEIAEILRDGKKTVGQTASKMHWELRY NSWDDFPLAQKWFASGEAMAHLEHLVHKGDVRRVNHDGEAYYELVN" gene complement(1105888..1107825) /locus_tag="Dhaf_1014" /db_xref="GeneID:7257982" CDS complement(1105888..1107825) /locus_tag="Dhaf_1014" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tte:TTE0687 putative regulator of acetoin metabolism" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002457510.1" /db_xref="GI:219667075" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7257982" /translation="MHYTQEEILEAWKNFIVRGVSQEDKVHPSVARSWERCRKLGLDP WSTEFPKCDPSLLQKKRTQYAELLSLAAPVMNYLYTLLDCNISICDSDGFVFELITPL KNYPRTLGAYTDEATCGNGAVTIALKEKIPMRTDGYEHYRIISQNHSGVSSPIMIDNA LVAVLNGVNPFGSLHDKALAMTITAAKLIEYCLMAGPKPAKPLELRPRIKTMIDDCSS PVLVLEHDGTIYTANHVFASSLAGSDTTGKSLGNYLADKHDLNRLLANNYEQPSEEIE FKTNFTPHKRETFRCRLLRKRQIRLLSGEVHTLLIFKKQGPVSIPHKLSKPHGIDYIG ESTAWSKVDSIVQKTAKFPSNVLLLGETGTGKEVVAKAIHQRSGRKGNFVAINCGALP KDLLHSELFGYEEGAFTGARAHGSIGKFEHAHEGTLLLDEIGEMPLDMQVTLLRFLQE RTITRINSNKPKKVDVRIIAATNKDMAELVRLGQFRQDLYYRLNVIEINLPPLHERKC DIPLLAEYFISELSRQYNVPSKQIHPAALQILCGYSWPGNVRELKNVIEKALILSEGL EITPDFLPEYILPSQNATSQSIPSTSRIGESEREHIINLLESYNGNIFQTAKALKMSR NTLYRKIEKYNIQLKTSAVKK" gene 1108136..1108282 /locus_tag="Dhaf_1015" /db_xref="GeneID:7257983" CDS 1108136..1108282 /locus_tag="Dhaf_1015" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457511.1" /db_xref="GI:219667076" /db_xref="GeneID:7257983" /translation="MNWHEFCIDHKLSKNTVYEQQEGGIKREQILVHHFTILPELNTR LNRR" gene 1108287..1109054 /locus_tag="Dhaf_1016" /db_xref="GeneID:7257984" CDS 1108287..1109054 /locus_tag="Dhaf_1016" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bra:BRADO0646 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="Enoyl-CoA hydratase/isomerase" /protein_id="YP_002457512.1" /db_xref="GI:219667077" /db_xref="InterPro:IPR001753" /db_xref="GeneID:7257984" /translation="MSETLLWEKQNDGIAYVIINKPERRNAMDADLMVKMVQVLEQLD QDTDVRVIILKGQGDHFSSGGDLKAGVGGEPTVENSRAALQKFIFAARKIQEMEKPVI AMVKGYAVGGGMSLAMVCDIVFASEDAKFSSNFLKVGITPEMGAMLLMPMMMGAQRAK ELWFTGRVIDAAEAKELGFVNRVYTAEEIENATRNFAADLAQMPALPVRITKRITNST LFNLLNSVMEAELQSTPFCTQTEEHKSLIEAFKNRKK" gene 1109086..1110663 /locus_tag="Dhaf_1017" /db_xref="GeneID:7257985" CDS 1109086..1110663 /locus_tag="Dhaf_1017" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: mva:Mvan_4474 EmrB/QacA family drug resistance transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457513.1" /db_xref="GI:219667078" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257985" /translation="MTNEQLSRKSPWFSYLGLLLGTFTMIEAMAFQIPALPVLTKEFG VPVATAALISLCYYLTATVCGPVFGNIADQIGRKRIAMIGMIIFAISEFMAAFATNYP FFLLARLCQGIGVAAVLPAGLSYASYLFPPNKRGIAVGVYTAVGTFASAMGGFLGGIL IAKFGWQSLYIISGVLAVLGIALVQITVPETPTAERKPFDYTGSILLLLTIGTWLSLS VLVANFGWVSPYTLGMLGLALVFAISFWNVEKRTSHPFMDLSILKNRYFAAPILLYFF IALCSQGSVFTNSYFVTAKPGLGTAYVGIMTGVIYLAGAVTSLLSGKLIDSFKIKTVL LIGMGTFIVGTLLYSQYTVDTPFWYIVLTLVFMSGSLLFMAPACMKMSMSAVPPEKLG SGSGTYIMIRDLGSPSGQTTMLAAFGAISASSLAAEITAEAQNSGVSQDMIPAVVEAG KTAGKVIDPALTDHLAKIGVSFQDLYAKANFDGMVIAINQMSTIIIAIAVAAFIAAVF VLPNTNGGPGGLDPKNK" sig_peptide 1109086..1109178 /locus_tag="Dhaf_1017" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.780) with cleavage site probability 0.720 at residue 31" gene 1110934..1112148 /locus_tag="Dhaf_1018" /db_xref="GeneID:7257986" CDS 1110934..1112148 /locus_tag="Dhaf_1018" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: drm:Dred_0571 crotonobetainyl-CoA:carnitine CoA-transferase" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_002457514.1" /db_xref="GI:219667079" /db_xref="InterPro:IPR003673" /db_xref="GeneID:7257986" /translation="MKKSEIPKFGNLQGLKVITSGSAIAGPFAGALFAEQGAEVIYLE NTAVPDMFRMFGDVWSSEHRNERTMALDIQSPEGREILVKLVQWCDILIESSKGGTWA KWGLTDEFLWGINPKLVITHVSGFGLTGDPDYIKRGSFDPIGQAFSGYMAINGEPEPA PPYAPKPFTGDYVTALNTTWATLAALYRTQQTGVGESVDVAQYECLVRIQGNFLLEGV NSGKQPPRMGNKDLKSALENVQKCQDGNYVMLALGGGAVLRRVEKLWGLDGDPDFQEP HTVIFKEDGPRAEKFVKAAVEFCRTHTAEEVDRIMNENQIPCSIVMTYDKMLDNPQYK ARETITEWYDEIGGRRIKGVAPIPRFRNNPSQIFRSGHTYGMDNEDVLSEFGYSENEI KAFYDKGVIKKK" sig_peptide 1110934..1111038 /locus_tag="Dhaf_1018" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.983 at residue 35" gene 1112199..1112969 /locus_tag="Dhaf_1019" /db_xref="GeneID:7257987" CDS 1112199..1112969 /locus_tag="Dhaf_1019" /inference="protein motif:PFAM:PF01012" /note="YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein YdiQ" /protein_id="YP_002457515.1" /db_xref="GI:219667080" /db_xref="InterPro:IPR014730" /db_xref="GeneID:7257987" /translation="MNIITCYKIVPEEQDIVVEKDRSLSFNRAEWKIGQYDLNAVEAG VAIAEAAGGKVMALSVGGKELDNSKLKKGILSRGPEELYLVIDEKLGNADSYTTAQTL AAAIRKMGKIDLIICGEGSSDLYAQQVGAQLGQMLKAATINGISKMAVDGERLIAERT LENEIEVLEISLPAVISVTTDINLPRIPSMKNILAAGKKPTTAWDLTAIGMTGVDIPT EVVSTLAPEQADRKKVLWEGESEEVIQQLFAHIRKELL" gene 1112984..1113931 /locus_tag="Dhaf_1020" /db_xref="GeneID:7257988" CDS 1112984..1113931 /locus_tag="Dhaf_1020" /inference="protein motif:PFAM:PF00766" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: drm:Dred_0573 electron transfer flavoprotein, alpha subunit" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha subunit" /protein_id="YP_002457516.1" /db_xref="GI:219667081" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:7257988" /translation="MNILKKVWVLAEKQAGLGQLCAGGRQLGEEVSVILWGEKEEADQ AIRMGADKVYRLGVLRPEPLKEDYVETILKLLQEEKPDALFVQPTKRGKLIAGRLAAG LGTSALVDAVEILTDGDKVQIQHMVYGGAAFRTERIQPQTAIVTIGTGVFTPLAEDSG HQGTVIEVEFVEPAVKIKLLEKKSKASAEVNLNAAKRVVGVGRGLVQQEDLRMVEELA GLLEAEVGCSRPIAEGMNWLPKERYIGVSGAMLKPDLYLALGISGQVQHMVGVNQAKV IVAINKDKAAPIFSQADYGIVGDFYKVLPSLIEKFKAEH" gene 1113986..1115137 /locus_tag="Dhaf_1021" /db_xref="GeneID:7257989" CDS 1113986..1115137 /locus_tag="Dhaf_1021" /inference="protein motif:PFAM:PF00441" /note="may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="YP_002457517.1" /db_xref="GI:219667082" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7257989" /translation="MDFRLTEEQELLLESLREVMARDCTEDYMKECYEKGEHPTKFVQ ALMDNGFGMLGVPEEHGGTPVDNLTMMLVAEEITKNGGPHFVFGQALSIADMLHFGSE EQIADTMAVVQRGGVAFVLGFTEPQAGSDSSAAATTYTRRNGKVYINGHKTFMSGALR APYMLCLARNSEEAGNADKRNAFSMWWVPMNAPGIKIEKLEKIGWHMQDTCEVYLEDV EVEEKDLVGVEGNGFMQVLYNFEMERLLMAASVLGMAECAFEDAVRYANQRVQFGKTI GSFQLIQEKITFMKAKIENMKNMVYKCAWEVDNGLPVQISSAIAKLYCAQAANEVIDD ALQIMGGIGYTKDARISRLWLDARVFRIGGGTDEIMIHAAGRAILKHYK" gene 1115301..1116539 /locus_tag="Dhaf_1022" /db_xref="GeneID:7257990" CDS 1115301..1116539 /locus_tag="Dhaf_1022" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: blj:BLD_1941 putative permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457518.1" /db_xref="GI:219667083" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7257990" /translation="MSKQSTRPWLVFLSLALLFFAALGMLGNTNGLYLTPVSQEMGWS RTDASWYLTIYMLTMALTQPIASRLLYKVNSKVLLFISMTLVCAATGAASQFQTVMAW NISGVLMGLGYSVIMYLTLPVIISNWFSKKTGMVLGIALAIGTLGSAIANPVAGMLIT EYGWRTARLAMSIAAWVIAVPGILLFVNFKPADVGLKPYGYEEGATGQAKAAISLKGV SAADSLKSPALYMVMFIACAVVLYSSMNTQIPGYASSIGLATAFGAYAMTILNLANMG GKIFWGWLTDRKGFLPSMVAALSCGIAGVLIILAGGSNVTIFYAGLVFFGICFSSLTV MLPLIVKGIFGEKDYGKIYANVTLVQQLMAASAAIIYGRIFDITQSFVFAWQMNIVTL AIAIVMLFGAVKVGKKLIHT" sig_peptide 1115301..1115375 /locus_tag="Dhaf_1022" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.771 at residue 25" gene 1116702..1118759 /locus_tag="Dhaf_1023" /db_xref="GeneID:7257991" CDS 1116702..1118759 /locus_tag="Dhaf_1023" /inference="protein motif:PFAM:PF00724" /note="PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF0455 NADH oxidase (NoxB-1)" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="YP_002457519.1" /db_xref="GI:219667084" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR000815" /db_xref="InterPro:IPR001155" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257991" /translation="MSQFPLLSSPVKLGSMLLKNRMITTSMSPGHDYTNEEGQPTLRF YNYLEERAAGGTALICQTICFYPRLKSQLDHLHPLPLGYGEEHLSHLSKMAEVVHKHG GLIVGQPYAVHDWKPAPEDKEEYWGPSTLSVSKLIPKPMTKEHIRIFKENIVQCCVIL QKAGWDGVEVMAGVGGILNRFMSPATNDRTDEYGGSLENRCRLTVEVMAEIKKACGED YPIIVRWSPVDFIKGSLTMEESLQIVKILEEAGAVLHNLAPGWHETSVPLTIKDVPEG YWSWISEEIKKVAKIPVATAYRNTDPFSMEEILAKDKADVIAGLRYNIADPEFANKVM EGRPEDINKCICCCRCLDDVISQGKPLNYCGVNPRLGEELETPLAQARQSKEVMVIGS GPGGLAAAVTAARRGHKVTIYERGPRLGGCLVMSAIFSPIYDRLNTYYKTLLKKHPEV KVHLNTAVTPALVTREKPDAVIVASGGHPIDLKVPGAEGGNVVKSHDFLELLNGNPPQ KPGIINKVMYNCGSVFLKFFYTPDLARTFMGKFPWPLGKKIAIIGGGLPGCELAKEMM HYDRELVIIEEKKKIGHDVGGSDRFHIVSAFKKSPRVTMETLTKVKAITRAGVKVVHE DGSEAFHQAKTVAVTLGFEKNMELAEALKGRVSEVYAVGDCSNPARMADATKAGYKAA CQI" gene 1118792..1119571 /locus_tag="Dhaf_1024" /db_xref="GeneID:7257992" CDS 1118792..1119571 /locus_tag="Dhaf_1024" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: fgenesh4_pg.C_scaffold_18772000001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457520.1" /db_xref="GI:219667085" /db_xref="InterPro:IPR017517" /db_xref="InterPro:IPR017518" /db_xref="GeneID:7257992" /translation="MKAILSDLLAEQSLVDTLVSDLSEEEWLKPLPVEMWNIKDAIIH IAFFDYAANKLMRGEAEDLVKLADAESGQDQYVRATNFHHLSGAEVLSWWREERTRMA ASFYDKNPKDRIPWAPGLPMSAKSLASARLMELWAHSVDIYDALGLEPVVRERITSTL FLSWQARPNAYRINGLEMPETPLYLELTLPSGESWAKGEPSAENRIKGSAKDWALVAI RRRNWMDTDLEVAGEEARRYASLVQTYAGWADPAPAAKRQR" gene 1119630..1121216 /locus_tag="Dhaf_1025" /db_xref="GeneID:7257993" CDS 1119630..1121216 /locus_tag="Dhaf_1025" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_002457521.1" /db_xref="GI:219667086" /db_xref="InterPro:IPR000873" /db_xref="GeneID:7257993" /translation="MNPMTVGDFLTLNSARYPDKIALVCKDKRLTYQELNCRVNALAH ALLDLGIGKGDKIGYLFPNSMEIVELFFAIAKIGAIAVPLNHRLVAREIKCLLDSVEC DVFVYSRLYDGPVSEVKGSFRTVKHIIRLGEPAPGEYSFEKLLEHKDTSEPDIAVDSG DLFRIQFTGGTTGRSKGVMRTHEADLFQTIGVMTSNKMGASPDEVVLTQSPLHHQGGI TWMLCVMVTGAQFVICDGFDPVEILRQIEQERVTYMLLLPPSTYLRLIDAPVFRDYDV SSVKVVHTSAGGTSPAIIQKMAEAFPNCEVYYGWGQTETGAGTVHRITREMALHHPEK TQSIGRPMPFFQLRIVDEAGKDVPLGEVGEGIAKGPAIFSGYYKQPELTDGTIADGWT RTGDMMRQDEEGLYYMVDRKKDMIKTGGENVFAQEVEAVIRKHPAVLDCSVIGVPDQT FGEAVMAVVKLRAGYTAAAADIQEHCKRDLSSYKKPRYVEFLDEFPVDSAGKIQKFKL RKKYREIYSHLIETHGKQLS" gene 1121297..1122529 /locus_tag="Dhaf_1026" /db_xref="GeneID:7257994" CDS 1121297..1122529 /locus_tag="Dhaf_1026" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: drm:Dred_0571 crotonobetainyl-CoA:carnitine CoA-transferase" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_002457522.1" /db_xref="GI:219667087" /db_xref="InterPro:IPR003673" /db_xref="GeneID:7257994" /translation="MVRRTEIPQFGLLSGVKVVHNTVSIAGPFAAELYAEYGADVIWI ENAKVPCMSRVATGNAWQQDRRNQRNLSIDISLPEGKEIFLKLMEDTDVFISAARGGQ YEKLGLGDEVLWERNPRLVIVKISGFGQTGLPDYMNRPSYDPIAQAFGGYMTMNGFPG MPSMPTNPLTADYMSALFAFGTSVAAVMKSRETSRGESIDLAQYEVLMRTQSRYPMDF LEQGIPFVKEGSHSAYFAGYGTYSCQDEKEVYMLYLGAGVLKKGLPFIGIEFGTEKIP PGTNLLYLSSPEGQLLEERIKAFCQSHTAEEVEKAFLAHGVPCSRIMDYNDCLKDPQY VAREVFTEWKKVNGESVKGVNIFPKFKNYPAQIWRGAPNIGMDNEDILTELGLTEEHI KELYGKKILTQRDYLNNI" gene 1122640..1123932 /locus_tag="Dhaf_1027" /db_xref="GeneID:7257995" CDS 1122640..1123932 /locus_tag="Dhaf_1027" /inference="protein motif:PFAM:PF01266" /note="PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: pth:PTH_2430 dehydrogenases" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_002457523.1" /db_xref="GI:219667088" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7257995" /translation="MSEDKFDAIVVGGGIAGTVAAYLLAKEGLEVILVERGNYAGSKN MTGGRIYSHSLGKIMPDFAREAPVERRITREKISLMTDESNVTLDFYSSKLGVQGSDS YSILRGVFDQWLAEKAEEAGVQIIPGIRVDDLIIREGKVCGVVAGEDELEANITILAD GVNSLLAQKLGFRGELAAHHVAVGAKEIIELPPQVIEDRFNCNGNEGTAWLFAGYPSD GRVGGGFLYTNKSSISLGVVTTLSDVIKGSKTVPQMLEDFKQHPAVQPLIKDGKMIEY SGHLVPEAGLAMIPKIVGNGVLVVGDAAGFCINLGYMVRGMDFAVASAECAAKAVLKA KEAQDFSEGYLHCYQGLLEQSFVMQDLKRYKDFPHFLEETPRIFNEYPKMAADLLADM FVVKGEPAQPLRKTIMQHVNKIGLLNIIKDGWKGVRSL" gene 1123929..1124216 /locus_tag="Dhaf_1028" /db_xref="GeneID:7257996" CDS 1123929..1124216 /locus_tag="Dhaf_1028" /inference="similar to AA sequence:KEGG:Spea_4042" /note="KEGG: spl:Spea_4042 putative ferredoxin" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="YP_002457524.1" /db_xref="GI:219667089" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7257996" /translation="MSQVNVDQKLGVNKFHVDEENAHIVMKEGNIDRAEYQKLVLACP AGLYKINDSGDIQFDYAGCLECGTCRVLCGKTLLDKWEFPLGTLGVEFRYG" gene 1124467..1126515 /locus_tag="Dhaf_1029" /db_xref="GeneID:7257997" CDS 1124467..1126515 /locus_tag="Dhaf_1029" /EC_number="1.11.1.6" /inference="protein motif:PRIAM:1.11.1.6" /note="PFAM: Catalase domain protein; KEGG: bwe:BcerKBAB4_4605 catalase" /codon_start=1 /transl_table=11 /product="Catalase" /protein_id="YP_002457525.1" /db_xref="GI:219667090" /db_xref="InterPro:IPR002226" /db_xref="InterPro:IPR010582" /db_xref="InterPro:IPR011614" /db_xref="GeneID:7257997" /translation="MKDNKPNKKREQLEPFIHESEGKKMTSNEGITISDDENTLTAGE RGPTLIEDFLSREKLAHFDRERIPERVVHARGYGAHGEFQPYESLADLTMADFLQDPN KKTPLFVRFSQVVGSKGCNETNRDVRGFSIKFYTDEGNFDLIAINMPVFFIQDAIKFP DLIHAVKPEPDNEYPQGQTDHNTFWDFMANNKETAHMSLWIASNRAFPKSFRTMEGFG VHTFRLVNKDGKSHFVKFHIKPLLGVHSLIWDEAQRLGSDADFHRRDLWENIEIGNYP EYEMAIQVIKEEDEFAYDFDLLDPTKLWPEEEIPLRRIGKIILNRNVENAFAETEQSA FHPGNIVRGIDFSNDPLLQGRLFSYTDAQQARLGPNHQQLPINRPVCPFANNQRDGAS RLVIDRGKVAYHRNGLANNSPYTVPGTQGGFVTYPSTVEGHKVRSTAPSFKDHYSQAK MFWNSMSEVEKRQIIGAYCFELGKCGPFVRQEWVDVLAHISTELAKSVSKELGTTVPA DVEESPVTKSSPALSLHNTIFVPDTLRVAVFLAQGFDGPGVSKVLETLAEAKLRVVIV HDTLGKVSGTEGVTYEVHDSFLTGSPLVYDGILIVGSGNITPYFTYTAQKFTTDIYNH FKPIGIIQKGDAVLEPLGLLADEGIVTDSGPDFAGRFIKAMAKQRFWNRPSFLYPAMV" gene complement(1126629..1127690) /locus_tag="Dhaf_1030" /db_xref="GeneID:7257998" CDS complement(1126629..1127690) /locus_tag="Dhaf_1030" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hmo:HM1_0446 metal-dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002457526.1" /db_xref="GI:219667091" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7257998" /translation="MRQLSINRLKEGDILGRTIYANDGRVLLGKGMALTKSYIDRLKT LGINILYIDDEVSKDIIVEDIISEEHRREAMASLDNAVQAVKVGKDFDGFNVKRNIDN IIQDILFQKDIFIGLTDMRTYDNQIFAHSVNVCVLSIVLGKALGLDRENLEGLAIGAL FHDIGTVKLPKKLLSKREPFTPKEAALYQTHTNHGFDILRTKRELNLLSAHIAFQHHE RLNGNGYPRKLEGDAIHQWAQIVGIANFYDNLVNDGPGHTRIPPYEACEILMGSAEKF FPKDLVITFLKHIAAYPTGCTVKLSTGETGIVVEQNKSLPMRPIIRVLVADQTLSRVQ AKEYNLVEERTLFIESILE" gene 1128098..1129069 /locus_tag="Dhaf_1031" /db_xref="GeneID:7257999" CDS 1128098..1129069 /locus_tag="Dhaf_1031" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00790 zinc metallohydrolase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002457527.1" /db_xref="GI:219667092" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR003124" /db_xref="GeneID:7257999" /translation="MIREVYPQIYLNEIPLPKNPLKALNSYIIPSQGRSLILDTGFNR EECRNALMEGIRASGIDLKRTDLVLTHMHVDHSGLADYLWKQGCKVYIGKKDGILLNN FRTSPEQVLGHLSEGLNLNQGIGMKEIEAFDIAPKEPFAYTPLQEGDCLEVGPYRFEV IDIPGHSPGHIGLYERKHKLFLGGDHVLNEITPNITFWHYKIDSLGNFMESLNKIRRF DIDWVFPSHRSLIQDHRQRIDELIIHHQERLEEITGILRDGQKSVIETAARMHWDLSY KSWNDFPLTQKWFASGEAMAHLEHLVYKGEAQRVNSEGKHYYELVNP" gene complement(1129163..1129612) /locus_tag="Dhaf_1032" /db_xref="GeneID:7258000" CDS complement(1129163..1129612) /locus_tag="Dhaf_1032" /inference="protein motif:PFAM:PF00571" /note="PFAM: CBS domain containing protein; KEGG: hmo:HM1_1706 CBS domain-containing protein" /codon_start=1 /transl_table=11 /product="putative signal transduction protein with CBS domains" /protein_id="YP_002457528.1" /db_xref="GI:219667093" /db_xref="InterPro:IPR000644" /db_xref="GeneID:7258000" /translation="MKVQDIMQTNVITISPNTEIREIAKLLCDHHISGVPVIDLFGNL IGIVSEGDLLHKETHPRVPEAVGFLGALIYYRGVKQYESDLKKLVALKASEIMTHEVI TLEKDAAIEEAASLMINHNVKRLPIMENGKMVGIITRKDVIKVLIEE" gene 1129865..1130665 /locus_tag="Dhaf_1033" /db_xref="GeneID:7258001" CDS 1129865..1130665 /locus_tag="Dhaf_1033" /inference="protein motif:TFAM:TIGR00129" /note="TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pth:PTH_2610 hypothetical protein" /codon_start=1 /transl_table=11 /product="formate dehydrogenase family accessory protein FdhD" /protein_id="YP_002457529.1" /db_xref="GI:219667094" /db_xref="InterPro:IPR003786" /db_xref="GeneID:7258001" /translation="MSGHLASTTETQVIKIIGTDKEVVKELVAIEKALTVFINGKEFA TMVCTPTQEKELVIGFLGSEGIIEDPDQIKKITLDKREGLVWVETSVEQTLSEDLFLK RYLTSCCGKGKSAFYFANDARLAQKVESRHTITAQEVSHYINLLEDNSELFHLTGGVH GGALASQGSLDYCAVDIGRHNVLDKLYGHAFLNGTDISQKVIVFSGRISSEILIKAAK MGCPILIGVSAPTDLALKLAEELGVTVLGFVRENRMNIYTHSERIKGC" gene complement(1130744..1131289) /locus_tag="Dhaf_1034" /db_xref="GeneID:7258002" CDS complement(1130744..1131289) /locus_tag="Dhaf_1034" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: btl:BALH_1566 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457530.1" /db_xref="GI:219667095" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7258002" /translation="MIEVGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPS LATLKRIAQALSVPLESFFLDPDTEIIYSYLKKDEQQYIPAEGRNWRLLIDHSKTNLM GAFVVDSTAVDKNVYSHQGVELIYVLEGETSLNISKEDYQLKAGDSLYFDASIMHWDN KKPDVPLKLIVIATPPEGFHF" gene complement(1131304..1131843) /locus_tag="Dhaf_1035" /db_xref="GeneID:7258003" CDS complement(1131304..1131843) /locus_tag="Dhaf_1035" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: mta:Moth_2004 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457531.1" /db_xref="GI:219667096" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7258003" /translation="MADLGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPS LITLEKIASALGYPISSFFVNPQFTSTHIPAEAQRTIQINPGMTLRFLINNVGQRNQL GAYIAEVADLSEEIIIHHGTKLIYVLEGEMHFNVAQKEFYLTEGDSLFFNGNVPHWIS RKSKSKLKLFVATTPPEIF" gene 1131993..1132679 /locus_tag="Dhaf_1036" /db_xref="GeneID:7258004" CDS 1131993..1132679 /locus_tag="Dhaf_1036" /inference="protein motif:PFAM:PF03749" /note="Regulatory factor involved in maltose metabolism" /codon_start=1 /transl_table=11 /product="sugar fermentation stimulation protein A" /protein_id="YP_002457532.1" /db_xref="GI:219667097" /db_xref="InterPro:IPR005224" /db_xref="GeneID:7258004" /translation="MKYTNIREGQFLSRPNRFIAKVEIDGKEEICHVKNTGRCRELLI PGVTVFLQEADFEHRKTKYDLIGVRKGNRLINMDSQVPNKVFREWLEKGYFQELQHIK QEQTFRNSRFDFYLEAGQRKIFVEVKGVTLEEEGVALFPDAPTERGVKHLRELSQAVA AGYEAYVVFIIQMKDIHYFTPNIKTHQAFGDSLIQAEKQGVKILALDCEVTEDSIEAG DFVTVKLVEG" gene complement(1132772..1133941) /locus_tag="Dhaf_1037" /db_xref="GeneID:7258005" CDS complement(1132772..1133941) /locus_tag="Dhaf_1037" /inference="protein motif:PFAM:PF01041" /note="PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cno:NT01CX_1463 spore coat polysaccharide biosynthesis protein SpsC" /codon_start=1 /transl_table=11 /product="DegT/DnrJ/EryC1/StrS aminotransferase" /protein_id="YP_002457533.1" /db_xref="GI:219667098" /db_xref="InterPro:IPR000653" /db_xref="GeneID:7258005" /translation="MNNRMIPFSPPDITDLEINAVVEVLKSGWITSGPKVHLLEEKLQ EYCQADHAVALASNSQGLDLILKVLNISGEAEILTTPYTYVATANAALHRGIKPTFID LKKDSFFMDEEKLYDAISDKTKVILTVDIGGVPMDYDVVRNILREKNREDILLISDSA HSIGAAYKGAPVGTQFDFHVFSFHAVKNLTTAEGGAITFNGDRENLAQVFKYSSLNGQ TKDALSKMKAGAWRYDILTDGLKCNMTDIGAAIGLVQLDRYDKILGQRKKLSHIYHSI LSEKEWALLPLLENDIMESSYHLYPLRIQGFTEEQRDRVIQELAEMGIATNVHYIPIP MFTYYKELGYDIQDYPNTYAQYANEITLPLYSILTSADCEYVAENVIKAVEKHRK" gene 1134236..1135384 /locus_tag="Dhaf_1038" /db_xref="GeneID:7258006" CDS 1134236..1135384 /locus_tag="Dhaf_1038" /inference="protein motif:TFAM:TIGR01977" /note="TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: tte:TTE2789 selenocysteine lyase" /codon_start=1 /transl_table=11 /product="cysteine desulfurase family protein" /protein_id="YP_002457534.1" /db_xref="GI:219667099" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR010969" /db_xref="GeneID:7258006" /translation="MIYFDNAATTWPKPECVYEAVDQCLRNKGANPSRSGHFMALLAG QIVLNARVQIAEFFNISDPLQVVFTPNATEALNIGLKGLLKPGDHVLTSSLEHNAVTR PLEKLRSQGVEVTKLPTSVQEGLYPEQVAAAIQNNTKLIVLSHASNVMGLIQPIGEIG RIAGEKGVLFMVDSAQTAGSMPIDVQAMGIDLLVFAGHKGLLGPQGTGGLYLREDLRL DTLKEGGTGANSEEPFQPEESPERYESGTLNTPGIAGLGAGIEFIKQEGIEKIREKER TLTRQLMLGLSAIPGVILYGPDPSVERAPVVSINLEGREPSEVSYLLDKLYGIASRPG LHCAPDAHKTLGTFQQGTVRLSLGYFNTSQEVEECLDAVAGLSSPNKK" gene 1135667..1135945 /locus_tag="Dhaf_1039" /db_xref="GeneID:7258007" CDS 1135667..1135945 /locus_tag="Dhaf_1039" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457535.1" /db_xref="GI:219667100" /db_xref="GeneID:7258007" /translation="MQSNETTTTQANPIDLSDVKAALLMAVDLGYEVIKEVAQKPIET GEDVAKKACEEGKKVVEKGVGAAKEHPLATLLIAFGLGFLVVKLLKRK" gene 1135949..1136224 /locus_tag="Dhaf_1040" /db_xref="GeneID:7258008" CDS 1135949..1136224 /locus_tag="Dhaf_1040" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457536.1" /db_xref="GI:219667101" /db_xref="GeneID:7258008" /translation="MEALADIVVKFLDLLEAQFADFRGKLFKILIAVGLIVVALVLAI TAFIMFVYGVFLGLSVLMPSYLAAFAVALVAIILGGGLVLCAKKTMA" gene 1136200..1136412 /locus_tag="Dhaf_1041" /db_xref="GeneID:7258009" CDS 1136200..1136412 /locus_tag="Dhaf_1041" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457537.1" /db_xref="GI:219667102" /db_xref="GeneID:7258009" /translation="MRKENNGLTVAEAKQQFKQSVAKFQPKRIITDNLWQCTLISFVA GMVSADSRKSRESLVSLAVAVVKKAL" gene 1136765..1137490 /locus_tag="Dhaf_1042" /db_xref="GeneID:7258010" CDS 1136765..1137490 /locus_tag="Dhaf_1042" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH491 amino acid ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457538.1" /db_xref="GI:219667103" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258010" /translation="MILLEGLHKHFGHLHVLKGIDLQVKTGEKLVVIGPSGSGKSTLI RCMNLLEKPSSGKVVVDGVEITAHKAPVAKVRQSVAMVFQQFNLYPHKTVLENLTLAP TLIKGVSKEEAEVSGMAILERVGLKVKANAYPSQLSGGQQQRVAIARALNMKPKIMLF DEPTSALDPEMIQEVLDVMVDLAHEGITMVVVTHEMGFARQVADRVLFMDEGEVLETG TPEHFFTNPTHERTKLFLSRILR" gene 1137530..1138366 /locus_tag="Dhaf_1043" /db_xref="GeneID:7258011" CDS 1137530..1138366 /locus_tag="Dhaf_1043" /inference="protein motif:PFAM:PF00497" /note="PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: cbe:Cbei_4172 extracellular solute-binding protein, family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_002457539.1" /db_xref="GI:219667104" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR000634" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001638" /db_xref="GeneID:7258011" /translation="MKKLGILLASVFLVGSLLAGCGSSTAQQPAQPPAQSGGGSESGA PADVQAIKDRGALSVGVKVDVPGFGYKDPKTNVIDGFEIDLVKALAEEIFGDPSKIKL QAVTAKTRGPLLDSGDVDMVVATFTITEDRKKSYNFSDPYYIDGVGLLVKKAPGYKSL KDLDGKNIGVAQSATSKTAVQAEADKLGVKVKFQEFATYPEIKAALDSGRVDAFSVDR SILLGYIDDSTMLLDDKFSPQEYGVASKLGNDGLAKLVNDKIAEMKGNGELDKLIEKW GL" sig_peptide 1137530..1137610 /locus_tag="Dhaf_1043" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 27" gene 1138453..1139040 /locus_tag="Dhaf_1044" /db_xref="GeneID:7258012" CDS 1138453..1139040 /locus_tag="Dhaf_1044" /inference="protein motif:TFAM:TIGR01726" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4171 polar amino acid ABC transporter, inner membrane subunit" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_002457540.1" /db_xref="GI:219667105" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:7258012" /translation="MVSVLGLCLALALGVVFGVLGSTHLKLFRAINRVYVEFIQNTPL VIQVFFVYNGLPHIGLMLPVFSVGVLGVGVYHGAYIAEVVRAGIQAIHRGQMEAALSQ GFSYWGAMRHVILPQAARVVLPPLTNQAVSLIKNTSVLAMIAGGDLMYRADSWSAGNI YYGPAYVTAGLLYLLLCFPLAQLAQYLERKMEVSA" sig_peptide 1138453..1138518 /locus_tag="Dhaf_1044" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.928) with cleavage site probability 0.645 at residue 22" gene 1139040..1139687 /locus_tag="Dhaf_1045" /db_xref="GeneID:7258013" CDS 1139040..1139687 /locus_tag="Dhaf_1045" /inference="protein motif:TFAM:TIGR01726" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH488 amino acid ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_002457541.1" /db_xref="GI:219667106" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:7258013" /translation="MAEIFQPYVFRFLAEGLMTTLYIAGMTIVLSFVVGTILGIARYS KNPILAPLAAIYIEVVRNIPLLLFILMFRFMTRLEPVNAGILAMTVFTSAIIAEVVRG GLNSIDKGQWEAAKSQGLSYVQILRYIILPQALRKMIPPLVSQFITVVKDTSYVWAVG IEELTGKGLIIMGQFGSTPQVFTLFGMIALTYFVLNYALSVIARNQQARSAMQSY" gene complement(1139759..1142353) /locus_tag="Dhaf_1046" /db_xref="GeneID:7258014" CDS complement(1139759..1142353) /locus_tag="Dhaf_1046" /inference="protein motif:PFAM:PF01326" /note="PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sat:SYN_02383 phosphoenolpyruvate synthase" /codon_start=1 /transl_table=11 /product="pyruvate phosphate dikinase PEP/pyruvate-binding" /protein_id="YP_002457542.1" /db_xref="GI:219667107" /db_xref="InterPro:IPR002192" /db_xref="GeneID:7258014" /translation="MEQPQTISTGFPSLDDVIQFLWMGDNVVFQVKDIEVYQRFVQGF IHKNAGPHRKMIYIRFAQHPPLITCHEHIELFPVNAERGFEEFCTQIHEKITLEGRDV FYIFDCLSELLDRWATDTMIGNFFKVTCPYLFELNTIAYFATYKNRNSFHTTAVIRDT TQVLIDIFEAEGQTYIHPIKMWKRYTPTLFFPHIEEGDAFLPVTSSAEVAFLNAQLGE YDDNPERDLDYWDRLFLKAGQLLAAKALTHSEEKNHIRHLARIFLSRDEGILQLIDEH FSLQDILSIKSRLIGSGFIGGKSVGMLLARKILVQDSDDWRKILEPHDSFYIGSDVFY SYLIDNNLWQLKMEQRRAKEDALAKAAQLQEKILKGQFNDFIRNKFLRMLEYFGQSPI IVRSSSLLEDGFGNAFPGKYESVFCINQGTLEERYHMFTQAIREIYASTLSEEALAYR EKHNLSDTEEQMALLVQRVSGSNKGEYFFPDLAGVGFSYNTYVWDNRIDPQAGMIRLV LGLGTRAVDRLEGDYARIAALDRPLSVPYDGLENFKAFTQSKIDVLNIRANSQETVSI QDLLQKSLELYQTQFAERDWATEQRLRDLGRAPQELWFFTFNPLFANTNIAQIFSKLM KTLENAYRHPVDIEFTLNLRRNGDYFINLLQCRPLQIRGSKHQVHVPEEIPLSHTIFK GVGNFMGGSLSTRVHKIIFVEPLAYSNLTQSQKYEVARTIGKLNRQIDKESTTTLLLG PGRWGSRLPALGVPVSFAEINRISLLGEIGYQQTGFLPDVSFGTHFFQDLVESGIFYL ALFPEKKETVYQLESLENYTEPLPEECFDKPYLQKTLQVYDFPAEINLQFVSDVASQR FLLFLPIQ" gene 1143024..1143341 /locus_tag="Dhaf_1047" /db_xref="GeneID:7258015" CDS 1143024..1143341 /locus_tag="Dhaf_1047" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: hmo:HM1_0868 nitrogen regulatory protein p-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_002457543.1" /db_xref="GI:219667108" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR017918" /db_xref="GeneID:7258015" /translation="MKMIRSIIRPEKAEVVAEALADAGLTSLTKMHVFGRGRTKGIRI GDVVYDEFPKTLLLMVVPNENLEKAIQIILEKSKTGTMGDGKIFITEVEEAYTISSGT KGL" gene 1143381..1143764 /locus_tag="Dhaf_1048" /db_xref="GeneID:7258016" CDS 1143381..1143764 /locus_tag="Dhaf_1048" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: hmo:HM1_0867 nitrogen regulatory protein p-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_002457544.1" /db_xref="GI:219667109" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR017918" /db_xref="GeneID:7258016" /translation="MKEIIACIRRHQVPATKKALEEAGFPALTIQSIEGRGKQYGIGG WEAEVDPELNKVLRPQQVTESRINWIPKRMLTLIVQDQEVEAAVKTITAINKTGHCGD GKIFVCPLHEVVRVRTGEVGKEAVL" gene 1143804..1144631 /locus_tag="Dhaf_1049" /db_xref="GeneID:7258017" CDS 1143804..1144631 /locus_tag="Dhaf_1049" /EC_number="1.18.6.1" /inference="protein motif:TFAM:TIGR01287" /note="KEGG: hmo:HM1_0866 dinitrogenase iron protein NifH; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein" /codon_start=1 /transl_table=11 /product="nitrogenase iron protein" /protein_id="YP_002457545.1" /db_xref="GI:219667110" /db_xref="InterPro:IPR000392" /db_xref="InterPro:IPR005977" /db_xref="GeneID:7258017" /translation="MRQIAIYGKGGIGKSTTTQNTVVALAEMGRKVTIVGCDPKADST RLILNSKAQTTVMDLARERGTVEDLELEDVLVEGHLGVRCAESGGPEPGVGCAGRGVI TAINFLEENGAYTEDTDYVFYDVLGDVVCGGFAMPIRENKAKEIYIVTSGEMMAMYAA NNISKGILKYANTGTVRLGGLICNSRQTDKEYELISALAKALNTQMIHFMPRDNEVQR AELRKQTVIQYNPTHSQADEYRALARKIEANTMMTIPTPMEMEQLEELLMEYGIMEM" gene 1144697..1146130 /locus_tag="Dhaf_1050" /db_xref="GeneID:7258018" CDS 1144697..1146130 /locus_tag="Dhaf_1050" /EC_number="1.18.6.1" /inference="protein motif:TFAM:TIGR01282" /note="KEGG: hmo:HM1_0865 dinitrogenase molybdenum-iron protein alpha subunit NifD; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1" /codon_start=1 /transl_table=11 /product="nitrogenase molybdenum-iron protein alpha chain" /protein_id="YP_002457546.1" /db_xref="GI:219667111" /db_xref="InterPro:IPR000318" /db_xref="InterPro:IPR000510" /db_xref="InterPro:IPR005972" /db_xref="InterPro:IPR010143" /db_xref="GeneID:7258018" /translation="MSISEMVQARKELVNQVLEVYPEKAKKNRRQHLSVKESDCSSCA VKSNGKTVPGIMTARGCAYAGAKGVVWGPVKDIVHISHGPVGCGFYSWANRRNLAEGE VGIDNFVPFQFTSDFQESDIIYGGDKKLEKIIEEVVELFPNAKGVSVLSECPVGLIGD DIESVARRMTEKTQRPVVPVRCEGFRGISQSLGHHIANDAIRDHIIGKGPEREIGPYD IGIIGDYNIGGDAWASKKILEEIGLNVVNIWTGDSTLEMLQNGHLVKLNLIHCYRSMN YMANYMEETYGTPWLEFNFFGPTKIKESLLNIAAHFDDSIRENTQRVIAKYEAQMQKV IDIYRPRLAGKKVMLYVGGLRPRHVVGAYEDLGMEIIGTGYEFAHKEDYERTYPQLKE GTLIYDDVSALELEEFVKDLKPDLVGSGIKEKYVFEKMGLPFRQMHSWDYSGPYHGYD GFPIFARDMDMAVNSPTWKSIKAPWMK" gene 1146156..1147574 /locus_tag="Dhaf_1051" /db_xref="GeneID:7258019" CDS 1146156..1147574 /locus_tag="Dhaf_1051" /EC_number="1.18.6.1" /inference="protein motif:TFAM:TIGR01286" /note="KEGG: hmo:HM1_0864 dinitrogenase molybdenum-iron protein beta subunit NifK; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1" /codon_start=1 /transl_table=11 /product="nitrogenase molybdenum-iron protein beta chain" /protein_id="YP_002457547.1" /db_xref="GI:219667112" /db_xref="InterPro:IPR000318" /db_xref="InterPro:IPR000510" /db_xref="InterPro:IPR005976" /db_xref="GeneID:7258019" /translation="MESCTKATKEWLNSVEYREKNFAREKLVINPAKACQPLGALLCA LGIEGCLPFTHGSQGCTAYFRSTLSRHFREPVASVSDSMTEDSAVFGGQANFIEGLKN AYTVYNPKVIAVYTSCMAEVIGDDISSFLGNAKDQGAVPMDFPVALANTPSFKMSHIA GYDIMLKGLIECLATPRQEDQINERLYVVPGFDTYPANLREYKRLLNMMNVPYTLLPD YSNVVDTPNLGKYELYPGGTPLVEMEEALNGLGYLLCQTYSTSNTKKYLTGESIPVEA IPMPIGMAGTDRFIEAAAKLTGKEVSEEITYERGLAVDAMTDAHQYMHGRKFALFGDP DLLLGLVSFLLEMGGEPVHIVCSNSTPLFKKDMERLLASSPYGQGATLYPNKDLWHLR SLLVTEPVDMLIGDSHGKWAARDAGIPLVRVGFPFYDRVNLHRYPIVGYSGVINLITM IVNTFLEEKDRASTDAYFELLR" gene 1147604..1148962 /locus_tag="Dhaf_1052" /db_xref="GeneID:7258020" CDS 1147604..1148962 /locus_tag="Dhaf_1052" /EC_number="1.18.6.1" /inference="protein motif:TFAM:TIGR01283" /note="KEGG: hmo:HM1_0863 nife; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1" /codon_start=1 /transl_table=11 /product="nitrogenase MoFe cofactor biosynthesis protein NifE" /protein_id="YP_002457548.1" /db_xref="GI:219667113" /db_xref="InterPro:IPR000318" /db_xref="InterPro:IPR000510" /db_xref="InterPro:IPR005973" /db_xref="GeneID:7258020" /translation="MFTNLTKLDLKDQGCPAGAGSPQLCMKALPGEGAERSCAYDGAR VVLMPITDVAHLVHGPIACAGNSWDNRGARSSGSQLFRRGLTTDLMENDVVYGGERKL KEAILEIAAHHRPQAIFVYATCVSALIGDDVSAICEQAEQELTIPVIAVNCPGFLGDK NIGNRIAGEVLFDRVIGTGEGPDEKVPLSVNLIGEYNIAGDLWGILPDFENLGITVQA TITGDAKFEDIASAHRACLNVLICSKSLTNLARKMEEKYDIPFMEGSFYGIHDTSETL INIAKALGDLDLLKRTKTYVQKKEEETREMIAGYKKCLEHKQAILFTGGVKTWSMVST LAELGINILAGGTQNSTPDDFQRMKALMDPTAQIIEDTSPAGFLKIIAEKKPDLIVAG GKTKYLAHKTRTPFLDINHGRKLPYAGYEGMVTFAGSLARTVNSPVWELLKQEFPPRE EG" gene 1148964..1150262 /locus_tag="Dhaf_1053" /db_xref="GeneID:7258021" CDS 1148964..1150262 /locus_tag="Dhaf_1053" /EC_number="1.18.6.1" /inference="protein motif:TFAM:TIGR01285" /note="functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe" /codon_start=1 /transl_table=11 /product="nitrogenase molybdenum-cofactor biosynthesis protein NifN" /protein_id="YP_002457549.1" /db_xref="GI:219667114" /db_xref="InterPro:IPR000318" /db_xref="InterPro:IPR000510" /db_xref="InterPro:IPR005975" /db_xref="GeneID:7258021" /translation="MMKYRHYEGNPQKNSPALGATLAYLGINGLLALLHGSQGCSSFI RLQLNRHFKESIPLNSTALLEDSVIFGGWEHLKKGIAVAADKYKPQIIGVMSSGLTET YGDDMASALASLYSERPDLEDLPVVLASTPDYIGSMQDGYQRTVEALVDALVGLNHHS PASALKTDIQEAPYLALLPGCHLTPADVDELKEIVRDFGFRPITLPDLSVSLDGHAEL EAAPVVQGGTLLEDFQLLPRSRACLSFGLSMEKAGETLKEAYHIPHYNFPSLSGLTAT DGLILTLAKLSGKTIPEKQLRQRNRLLDTLADYHDQLGKLRVAIALETDLLYSLGSSL VEVGAELTVALAASQAGTDRLSLPVPMEVGDLETLEERAGQSKLIIANSNGRQAAGQL KLPHLRAGLPVFDRAGYPQTCWIGYEGTQRFLFATLNAVS" gene 1150274..1150645 /locus_tag="Dhaf_1054" /db_xref="GeneID:7258022" CDS 1150274..1150645 /locus_tag="Dhaf_1054" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: hmo:HM1_0861 NifX" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002457550.1" /db_xref="GI:219667115" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7258022" /translation="MLVGFASSDGLTIDSHFASAPGFERYVFTMDSQGVYQDSQGAKG PAESEDKVDARIQILKECAIVYCTQIGGPAAARLVQSGIHPIKVPEGTPIADEVRRLD QLLSSQKLPPWLKKKLNQEGN" gene 1150657..1150917 /locus_tag="Dhaf_1055" /db_xref="GeneID:7258023" CDS 1150657..1150917 /locus_tag="Dhaf_1055" /inference="protein motif:TFAM:TIGR02936" /note="TIGRFAM: ferredoxin III, nif-specific; KEGG: hmo:HM1_0860 ferredoxin III, nif-specific, putative" /codon_start=1 /transl_table=11 /product="ferredoxin III, nif-specific" /protein_id="YP_002457551.1" /db_xref="GI:219667116" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014283" /db_xref="GeneID:7258023" /translation="MSVVFETFGGSPWTPMYVDTFDKNKCLGCGRCIKLCVQKVLGVE TYEDDEGTERQIAKIDNKDHCIGCQSCGSICVRRCYTFKSKS" gene 1150958..1151800 /locus_tag="Dhaf_1056" /db_xref="GeneID:7258024" CDS 1150958..1151800 /locus_tag="Dhaf_1056" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: hmo:HM1_0859 NifB" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002457552.1" /db_xref="GI:219667117" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258024" /translation="MHKACTCTQGNMNTPRLNLGHPCFSTKGHGNTGRIHLAVAPGCN ISCNYCVRKFDCANESRPGVASKVQTPEEALATVRKVKASGKGDKFVVVGIAGPGEPL ANEGTFTTLRGVKRDFPEMILCLSSNGLLLPEKMEELTDIGVSHITITINTLEEQVGA QIYSYVRWKGQTLIGAEAARTLLHNQLSGLEMAAKAGMTVKINTVLMPGINDHGLNDL SVEIKKRGAHLHNIMPVIPQGKLAHIIPPSREQLAVRRSSLSSLLPQMTHCQQCRADA IGVF" gene 1151800..1152249 /locus_tag="Dhaf_1057" /db_xref="GeneID:7258025" CDS 1151800..1152249 /locus_tag="Dhaf_1057" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: afw:Anae109_3031 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457553.1" /db_xref="GI:219667118" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7258025" /translation="MKPVIREAVPADITDMAKLLKTLFSLEADFSYDETKQRRGLELM LEEGARRCMMVAEQNGRVIGMVTAQLLISTAEGGLSAWVEDLVVEEPYQGQGTGRALL LSLQAWAAARGVKRLQLLADRSNTRALAFYRKMAWQFTELICLRTYV" gene 1152282..1152668 /locus_tag="Dhaf_1058" /db_xref="GeneID:7258026" CDS 1152282..1152668 /locus_tag="Dhaf_1058" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: xau:Xaut_0093 nitrogen fixation protein NifX" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002457554.1" /db_xref="GI:219667119" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7258026" /translation="MIKVAFCSEDMQHVDAHFALSSNIVIYEFLPASFHRVKTKSFKS QTGQETETINERRLAERIEAIQDCDILYCSQIGSPAAARLINHNIFPMQTKENLLIEE AACRLQRMFHKNPPHWLENKFQRGGA" gene 1152670..1153803 /locus_tag="Dhaf_1059" /db_xref="GeneID:7258027" CDS 1152670..1153803 /locus_tag="Dhaf_1059" /inference="protein motif:PFAM:PF00682" /note="PFAM: pyruvate carboxyltransferase; KEGG: hmo:HM1_0858 homocitrate synthase, NifV" /codon_start=1 /transl_table=11 /product="pyruvate carboxyltransferase" /protein_id="YP_002457555.1" /db_xref="GI:219667120" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="GeneID:7258027" /translation="MKDSVWLCDTTLRDGEQTPGIAFRFKEKARIATCLAEAGIDEIE VGVPSVGADEMEIIKGLVDLRLPVRLATWNRTSKEDLEASFRTGVGAVSICIPVSDQH IERKLRKSRTWAMDSMGEAVELAKKEGKYVCVGFEDASRADVDFMIKMAKVAEGLRAD RIRLADTLGILDPLELARRFAPLPQRTALPLEFHAHNDLGMATANALTALRIGFKAVS VTVGGLGERAGNAPLEEISVAIHHILQRPTAFDIQKVNDISLLVSDITQREVPRSKPV VGSDVFTHTSAVHLDGIRKDVENYQPFPPESISRKHSMVFGKYSGIKELVRLLEEERV PYTQEQLTELLIRVRLHSSIKKIPLQAEDVLSLARSLNQLRNA" gene 1154176..1154613 /locus_tag="Dhaf_1060" /db_xref="GeneID:7258028" CDS 1154176..1154613 /locus_tag="Dhaf_1060" /inference="protein motif:PFAM:PF09021" /note="PFAM: HutP family protein; KEGG: hmo:HM1_0869 nif-related orf1" /codon_start=1 /transl_table=11 /product="HutP family protein" /protein_id="YP_002457556.1" /db_xref="GI:219667121" /db_xref="InterPro:IPR015111" /db_xref="GeneID:7258028" /translation="MPERSQKQEKPSLERTALALALTETREKENELKKLMLSQNVYCA VTELGGTYSALQPTGKLTHSVISAAINTGAIQKEPKAIHAVVHATLEASNGIFVHTNS NASYALKVGIACDRDWIAIAIFGRSSIHALSEHCRVGLGYMHL" gene 1154835..1156220 /locus_tag="Dhaf_1061" /db_xref="GeneID:7258029" CDS 1154835..1156220 /locus_tag="Dhaf_1061" /inference="protein motif:TFAM:TIGR00836" /note="TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: drm:Dred_2862 ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_002457557.1" /db_xref="GI:219667122" /db_xref="InterPro:IPR001905" /db_xref="InterPro:IPR010256" /db_xref="GeneID:7258029" /translation="MKRVWVLLLAIISMLALPVAVLAEDGAVVDTGDTSFIILSAALV FLMTPGLALFYGGMVRKKNVLSTVMHSFILMGVSSVLWVLIGFSLAFGTDHAGIIGSL EWIGLSGVGMEPNGDYSSTIPFLLFMAFQMMFTIITPAIISGSVAERMRFPAFLGFMV LWLLVVYYPLAHSVWGVGGFLREMGALDFAGGTVVHISSGVTGLVAALILGKRKGHGK EPMAPHQLPMTVLGAGLLWFGWFGFNAGSALGANGLAAMALVTTNTSAAAGALAWMAT EWMHRGKPTILGAASGAIAGLVAITPGAGFVTPMSSLVIGLVGGAICYFGVSVLKAKL GYDDSLDAFGCHGIGGIWGALATGIFASASVGGTDGLLYGNAAQVGIQAIGVAVTIVL AVVATFIIMKLVGIFTPLRVTAEEEEMGLDISLHGEEAYPDFIGSGYLPTIVSAAKAV SVSTPSGQPGK" sig_peptide 1154835..1154906 /locus_tag="Dhaf_1061" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 24" repeat_region complement(1156244..1158271) /note="IS element" gene complement(1156391..1157638) /locus_tag="Dhaf_1062" /db_xref="GeneID:7258030" CDS complement(1156391..1157638) /locus_tag="Dhaf_1062" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS116/IS110/IS902 family protein; KEGG: fgenesh4_pg.C_scaffold_8901000001; . ; K07486 transposase" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002457558.1" /db_xref="GI:219667123" /db_xref="InterPro:IPR003346" /db_xref="GeneID:7258030" /translation="MSLFVGIDVSSSDFKVRILDERGNEPVKRLRALNDQPGCEQVAR YLFDACAQVNVDRLVIGLEATSVYSWPLQMFLAEDHSLAPLQPQIYSFNPKVVANFKK AYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNY FLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVAARPLDELIDFLMEKGKRH FEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEI RHFPNTLITIPGIGPVLSAGIIAEIGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDT PLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRM VDALLRSNQIYRPHGNRGNANQA" gene 1158278..1158616 /locus_tag="Dhaf_1063" /db_xref="GeneID:7258031" CDS 1158278..1158616 /locus_tag="Dhaf_1063" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: hmo:HM1_0742 nitrogen regulatory protein p-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_002457559.1" /db_xref="GI:219667124" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR017918" /db_xref="GeneID:7258031" /translation="MKKIEAIIRPSKLDEVQSALDRFGVSGLTVTHVIGCGKQKGHTQ VYRGVEYKVFLLPKVKIEVVVNDQAVDEVVRIISDEARSGEVGDGKIFIYPVEGAIRI RTGEIGETVL" gene 1158902..1159906 /locus_tag="Dhaf_1064" /db_xref="GeneID:7258032" CDS 1158902..1159906 /locus_tag="Dhaf_1064" /inference="protein motif:PFAM:PF02743" /note="PFAM: Cache domain protein; chemotaxis sensory transducer; KEGG: hmo:HM1_1061 methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_002457560.1" /db_xref="GI:219667125" /db_xref="InterPro:IPR004010" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7258032" /translation="MKVNELSIDASILLVELKEANQNMGKVIESIQEVAKHTNLLSLN SAIEAARAGEAGRGFRVVADEIKKLATRSLASTKESTQIVENIQIKANEVMAVRTADV AYDTIDKIDRNLFERNCDAQAWARFDKVKHCFLADDPQRIAACNTLLKSLVEIYEVYI DLYVLDPEGTIVSAGVHTELIGKNFADKPWFIEAKAANAISVSDLYLSPLENRYTVAY TCPIVSDEGEVLGYFSTRFNWDFIYDIIDSARIGKNGEVYVLNKEGYVIASRNRKGVL KDNLKHLEAARRAINGETYGFLFENNGQKSTKIYGYAHTRGYNAYQGKNWSALICETI" gene 1160046..1160384 /locus_tag="Dhaf_1065" /db_xref="GeneID:7258033" CDS 1160046..1160384 /locus_tag="Dhaf_1065" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: drm:Dred_2863 nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_002457561.1" /db_xref="GI:219667126" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR017918" /db_xref="GeneID:7258033" /translation="MKKIEAIVRPGKLDDVQSALDDFGVSGLTVTQVLGCGNQKGHTQ VYRGVEYKVYLLPKVKIEVVVTDQDVDQVISIITQAARTGEVGDGKIFVYPVEEAIRI RTGEKGDDVL" gene 1160678..1161694 /locus_tag="Dhaf_1066" /db_xref="GeneID:7258034" CDS 1160678..1161694 /locus_tag="Dhaf_1066" /inference="protein motif:TFAM:TIGR00787" /note="TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pth:PTH_1351 TRAP-type C4-dicarboxylate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctP subunit" /protein_id="YP_002457562.1" /db_xref="GI:219667127" /db_xref="InterPro:IPR004682" /db_xref="GeneID:7258034" /translation="MSTKIYAIILGCLLLWITGCQRNVIDQQQVTKDERIVIKFSHVV AENSPKGLAAERFASLVRRRTGGYVEVQVYPNSELYKDGEEFDALKNGAIEMIAPATS KLSAMIPEWQLFDLPYAFNNLENIPYFVDGPVGQMLLARLEEHSMLGLAVWHNGFKQM TNSSHPLQRPEDYRGLEFRIMPFSNTLKYQFEVLGAVAHPLAFSDVHAALETGGVDGE ENTISNIFTQRFDQVQKYLTISDHGYLGYIVIVNKEFWEGLPEGIRKILEEALAEVTL WEREKAAEVNAQQLAALEREGEIKIHYLNAEEQKALEEALAPVYEMLAEDIGTELVDL MRNS" gene 1161803..1162873 /locus_tag="Dhaf_1067" /db_xref="GeneID:7258035" CDS 1161803..1162873 /locus_tag="Dhaf_1067" /inference="protein motif:TFAM:TIGR00787" /note="TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1366 TRAP dicarboxylate transporter, DctP subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctP subunit" /protein_id="YP_002457563.1" /db_xref="GI:219667128" /db_xref="InterPro:IPR004682" /db_xref="GeneID:7258035" /translation="MFYFKKDHKSLTLFMVITLIMALALAGCSSSSNSSNSGNAATAV DGGEKKADPIIVKFSHVTTIDSPKGLASEKFKELAEKYTDGRVTVEVYPSSQLYGDKE ELEAVQAGNVHIIAPSITKLVGMNPQFQYVDLPFLFKDNDAVYKFWESDANKKLMNSL DNYGVRLLAMWPNGFKQFVNGKYPLVTPADFKGLKFRVQAGSVLEAQFKALGAGSATI PFGETYTALQQGTVDATENTFNNIDTQKYAEVQKHLTVSNHGRLDYCIIVNTKFWDGL PGDIREALEKAMAEATDYAVELAEDLDQKSFENLKNAGMEVVELNEAQRAEFVKIMEP VVAEFESVIGKDIIDAARAANQ" sig_peptide 1161803..1161925 /locus_tag="Dhaf_1067" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.383 at residue 41" gene 1163024..1163557 /locus_tag="Dhaf_1068" /db_xref="GeneID:7258036" CDS 1163024..1163557 /locus_tag="Dhaf_1068" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: chy:CHY_1365 TRAP dicarboxylate transporter, DctQ subunit" /codon_start=1 /transl_table=11 /product="Tripartite ATP-independent periplasmic transporter DctQ component" /protein_id="YP_002457564.1" /db_xref="GI:219667129" /db_xref="InterPro:IPR007387" /db_xref="GeneID:7258036" /translation="MKRFWRAFNFLEDILAGGLLFIGVTVIFYGVIMRYFFNDPQPWV DEISQWLIIWGTLIGASVALRNNHHISVEMLYDRLPLRGRFMVTIFAHMVGLLFGIFV LRYGFELVAFVHKTGQKSTDTGIFLYIVYFILPLMGALLSMRFVVKLYETLKNGGKDW MAEQERSVKSDDHSFTV" gene 1163535..1164815 /locus_tag="Dhaf_1069" /db_xref="GeneID:7258037" CDS 1163535..1164815 /locus_tag="Dhaf_1069" /inference="protein motif:TFAM:TIGR00786" /note="TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: chy:CHY_1364 TRAP dicarboxylate transporter, DctM subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctM subunit" /protein_id="YP_002457565.1" /db_xref="GI:219667130" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="GeneID:7258037" /translation="MTTALLFSIFVVLFLLHVPIAISLAMSTILIFTLTSDFNLMMIP QRMFAGINTAPLMAIPGYVLAGVLMSRGGVSKYLIECLKAWIGHLPGGLSVVTILACT LFAAISGSSPATAAAIGAIMLPAMLKGGYPKRYTMGLIAASGTLGILIPPSIPLIVYG VTSDTSIGKLFMAGIIPGLILASTLVIIAIVYAKIHGYGQTEKATWSERWKSTIRAIP ASFLPVLILGSIYAGICTPTEAAVVAVFYTLIISLFVYKELRPQDFRKVLVETINTTS MIFLIIAAAMVFALFLTNNQVPNKVAAWIGESSVNIFVFFLLTQLMFFVMGTFLEAVS IILITLPILLPIMRSIGIDPIHFAIVMTVNMELAMITPPVGLNLFVVSSMAKEKLGEV VMGVLPFILVMIVMLIVLVVFPELSLMLPTAVMK" sig_peptide 1163535..1163612 /locus_tag="Dhaf_1069" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.899) with cleavage site probability 0.703 at residue 26" gene complement(1164905..1166086) /locus_tag="Dhaf_1070" /db_xref="GeneID:7258038" CDS complement(1164905..1166086) /locus_tag="Dhaf_1070" /EC_number="1.3.1.74" /inference="protein motif:PRIAM:1.3.1.74" /note="KEGG: chy:CHY_0655 serine protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein" /codon_start=1 /transl_table=11 /product="2-alkenal reductase" /protein_id="YP_002457566.1" /db_xref="GI:219667131" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR001940" /db_xref="GeneID:7258038" /translation="MNEMNEKKNRLLPLAALCIISALLGGVSSVSLLQYVYPETLSAI EAQATLNSPGTASPVTLLANTQTDESNSPVVQVAKDVGPAVVGVSNYQNVSNTYRYGF GLGSRNNTQSSELVEAGTGSGFIIDAQNGYIVTNYHVIENAQKITVSLSDGRNLEAKL IGSDSRTDLAVLQISDTSNLTEVKLGDSSKIEVGEFVVAIGNPGGNKFARSVTAGVIS ATNRTLQMSGESTLYNMLQTDAAINPGNSGGPLVNYSGEIIGINSAKYAESGFEGMGF AIPITEATSIITQLIENGAAKHPALLVSVSDQYLLYAKEQNLPLGAYIYEVNPEGPAG KAGIQEGDVITHVNDVKVENSTELIGEIYKHNVGDKVTLTFIRDGQTKAVQVTLGEIT T" sig_peptide complement(1164905..1165009) /locus_tag="Dhaf_1070" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.220 at residue 35" gene complement(1166346..1166546) /locus_tag="Dhaf_1071" /db_xref="GeneID:7258039" CDS complement(1166346..1166546) /locus_tag="Dhaf_1071" /inference="protein motif:PFAM:PF08984" /note="PFAM: Domain of unknown function DUF1858; KEGG: mta:Moth_2496 hypothetical protein" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1858" /protein_id="YP_002457567.1" /db_xref="GI:219667132" /db_xref="InterPro:IPR015077" /db_xref="GeneID:7258039" /translation="MLTGAEKITDVVEKYPQSVEVFQKYGMHCFGCMAARFENVEQGA MAHGIDVPSLIKDLNKAIGNQS" gene 1166739..1167029 /locus_tag="Dhaf_1072" /db_xref="GeneID:7258040" CDS 1166739..1167029 /locus_tag="Dhaf_1072" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457568.1" /db_xref="GI:219667133" /db_xref="GeneID:7258040" /translation="MDRLILMILAVGLVSIGITVLLGKVASRIKSLKYLPGALCLCLS IYYYYLARFVRAGEGFEDLGNFILAVFLFAAAFFSIITALIIEYRDRSKGDR" sig_peptide 1166739..1166810 /locus_tag="Dhaf_1072" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.678) with cleavage site probability 0.646 at residue 24" gene 1167078..1167153 /locus_tag="Dhaf_R0026" /note="tRNA-Lys1" /db_xref="GeneID:7258041" tRNA 1167078..1167153 /locus_tag="Dhaf_R0026" /product="tRNA-Lys" /db_xref="GeneID:7258041" gene 1167329..1167670 /locus_tag="Dhaf_1073" /db_xref="GeneID:7258042" CDS 1167329..1167670 /locus_tag="Dhaf_1073" /inference="protein motif:PFAM:PF00893" /note="PFAM: small multidrug resistance protein; KEGG: lsp:Bsph_1744 multidrug resistance protein" /codon_start=1 /transl_table=11 /product="small multidrug resistance protein" /protein_id="YP_002457569.1" /db_xref="GI:219667134" /db_xref="InterPro:IPR000390" /db_xref="GeneID:7258042" /translation="MNKHWYKVFVAAFLEVFWVIGLAHSHDVWTWSGTVIALIVSNYL MITAGQVLPAGTVYAVFVGLGTAGTVISEIFFFEEPFQWAKVLLILILLTGVFGLKAV TGERSKEGVDA" gene 1167670..1167984 /locus_tag="Dhaf_1074" /db_xref="GeneID:7258043" CDS 1167670..1167984 /locus_tag="Dhaf_1074" /inference="protein motif:PFAM:PF00893" /note="PFAM: small multidrug resistance protein; KEGG: lsp:Bsph_1745 molecular chaperone-like protein" /codon_start=1 /transl_table=11 /product="small multidrug resistance protein" /protein_id="YP_002457570.1" /db_xref="GI:219667135" /db_xref="InterPro:IPR000390" /db_xref="GeneID:7258043" /translation="MAWFTLCLAGLLEAFGVAMINQLQISRTWKTVGLLIMGFGASLA LLGYSLRFLPMGTAYAVWTGIGVVGGTLIGMIRYNESKDWRRVVFITMILGSVIGLKL IS" gene 1168074..1168943 /locus_tag="Dhaf_1075" /db_xref="GeneID:7258044" CDS 1168074..1168943 /locus_tag="Dhaf_1075" /inference="protein motif:TFAM:TIGR00417" /note="TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: gka:GK1740 spermidine synthase(putrescine aminopropyltransferase)" /codon_start=1 /transl_table=11 /product="spermidine synthase" /protein_id="YP_002457571.1" /db_xref="GI:219667136" /db_xref="InterPro:IPR001045" /db_xref="GeneID:7258044" /translation="MTRKLPTFLSENEHGLWMTEDERENLKIDYRIKEIIVEAKSTLQ HVMILDSYSFGRMLVLDGAVQTTSLDGHIYNETISHVPLSIHPNPKKVLIIGGGDCGV AKEVCKYSSVEQIDVVEIDPMVVEVCLKHLPEVSGGLADPRVNFIFDDGVNYVQNSPT KYDIVIVDSSDPIGPAEVLIEKSFYRSIFNALEEDGLMVCQSQSPIFHGEVMEQIFER VHDIFPKTKMFTAVVPTYPGGLWSFTLGSKGYVIPNEARMKELDALYVNEQIMASCFS LPEFMNKQLSKYR" gene complement(1169044..1170462) /locus_tag="Dhaf_1076" /db_xref="GeneID:7258045" CDS complement(1169044..1170462) /locus_tag="Dhaf_1076" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: esi:Exig_0009 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family with aminotransferase domain" /protein_id="YP_002457572.1" /db_xref="GI:219667137" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7258045" /translation="MLTYSFETIGSESMYEYLYHCIKTDILQKKLKADEKLPSKRVFA KNLGVSVITVENAYAQLAAEGYIYTQPKRGYFVANLDKQTLHPSLETSQNGLQSKKEP AYYADFVKNSVAPDSFPFSVWAKLLRDVMDTESQASLLSDTSVGGVMKLRQAIAEHLY QFRGLSVEPEQIIVGAGTQYLYSVIIQLLGRKLTYAVEDPGYTRLSKIYASNDVQCCH IPMDDCGVIPESLKECGADILHITPSHHFPTGIVMPVSRRYELLSWAAQENERTIIED DYDCEFRLFGKPIPTLQSIDVMEKVIYINTFSKSLAPTFRISYMVLPKHLVNRFYSQL GFYSCTVSTFEQFTLARFISEGYFEKHINRMRTYYRKQRDAILKALRQSELNPYITIQ EEDSGLHFLMEVATDVDDAQLIDAAKKSGVRISCVSQYYHGTPDHKTHKIIINYSGLE SAKIENAIQRLSQSLVEGVLSL" gene 1170577..1171452 /locus_tag="Dhaf_1077" /db_xref="GeneID:7258046" CDS 1170577..1171452 /locus_tag="Dhaf_1077" /inference="protein motif:TFAM:TIGR00343" /note="with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate" /codon_start=1 /transl_table=11 /product="pyridoxal biosynthesis lyase PdxS" /protein_id="YP_002457573.1" /db_xref="GI:219667138" /db_xref="InterPro:IPR001852" /db_xref="InterPro:IPR008867" /db_xref="GeneID:7258046" /translation="MDRKRYELNKELAQMLKGGVIMDVTTPEQAKIAEAAGACAVMAL ERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDE SEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAV RHMRMINRQISRLAGMREDELFQEAKELQVPYDLVLYVHEHKRLPVVNFAAGGVATPG DAALMMQLGAEGVFVGSGIFKSGDPEKRAQAIVKAVTNYQDPKVLAELSEDLGEAMVG INEQEIELLMAERGK" gene 1171454..1172053 /locus_tag="Dhaf_1078" /db_xref="GeneID:7258047" CDS 1171454..1172053 /locus_tag="Dhaf_1078" /inference="protein motif:PFAM:PF01174" /note="with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase subunit PdxT" /protein_id="YP_002457574.1" /db_xref="GI:219667139" /db_xref="InterPro:IPR002161" /db_xref="InterPro:IPR011698" /db_xref="GeneID:7258047" /translation="MRVGVLAVQGAFIEHEKILQNLGVECLELRNGKDARQDVEGLIL PGGESTTQGKLLRELDMFEPLREKIVAGLPVLATCAGLILLAEELANDSARYFATLPV RVKRNAYGRQLGSFYTEEQFGDLGKVPMTFIRAPYIESVGEDVEILAKVNGDIVGVRY KNQIGLSFHPELNGDRRIHQMFLDSISGGKSFPCTQKAV" gene 1172292..1173506 /locus_tag="Dhaf_1079" /db_xref="GeneID:7258048" CDS 1172292..1173506 /locus_tag="Dhaf_1079" /inference="protein motif:TFAM:TIGR01127" /note="TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pth:PTH_0102 threonine dehydratase" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="YP_002457575.1" /db_xref="GI:219667140" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005789" /db_xref="GeneID:7258048" /translation="MPTLLTLEQIQEAQQAIQPYIHRTLLDHSSNLSALAGTEIYLKL ENLQKTGSFKVRGAMNKALKLSEEEKKKGILAASAGNHAQGVAMAAARIGIPATIVMP ENAPLAKVSATEGYGAQVILSGAVFDDAYQKAVEIQKETGATFIHAFDDLEVMAGQGT IGLEVFEELPEVDTVLVPIGGGGLIAGIAVALKSLKPSVRVIGVQAAGAASMAHALSI GRPEPLGQASTLADGIAVKRAGDLTFAAVRHYVDEMVTVEEEEISQAILLLMERTKTL AEGAGAVAVAAALQGKLDLKEQKTVLILSGGNIDVNFLAQIIERGLRRSGRTMACQLL LPDQPGNLEKVIELIAQERANIINVEHSRYDLAVPLRSARVHMLLETQSFEHQKRIIQ RLEGAGYPLTVN" gene 1173585..1174253 /locus_tag="Dhaf_1080" /db_xref="GeneID:7258049" CDS 1173585..1174253 /locus_tag="Dhaf_1080" /inference="protein motif:PFAM:PF02586" /note="PFAM: protein of unknown function DUF159; KEGG: chy:CHY_1639 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF159" /protein_id="YP_002457576.1" /db_xref="GI:219667141" /db_xref="InterPro:IPR003738" /db_xref="GeneID:7258049" /translation="MCGRLILFNPMEILARFQVSADNLVPRYNMAPSQDIPVIINDGR NHLVMYRWGLIPYWAEDISIGNTLINARGETVDEKPSFKYSLPRRRCLVVADGFYEWR REGCRKYPYRITLKNNELFGLAGLWDTWKSPDGEMIHSCTIITTTANELIQPLHDRMP VILSREAESIWLDPHVTDSRLLKSLLTPYPADQMSLYEVTSRVNSPKFDDPECLVAAL PRLF" gene 1174320..1175354 /locus_tag="Dhaf_1081" /db_xref="GeneID:7258050" CDS 1174320..1175354 /locus_tag="Dhaf_1081" /EC_number="4.1.2.5" /inference="protein motif:PRIAM:4.1.2.5" /note="PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: amt:Amet_3510 threonine aldolase" /codon_start=1 /transl_table=11 /product="Threonine aldolase" /protein_id="YP_002457577.1" /db_xref="GI:219667142" /db_xref="InterPro:IPR001597" /db_xref="GeneID:7258050" /translation="MISFKNDYSEGAHPQILEALLTSNYVQESGYGEDSYCQAAAEIL RKKLGNNAVDIHFLAGGTQTNLIAIAAFLRPHEAAIAAHTGHIFVHETGAIEATGHKV LTAEVKDGKLTPAHVEEILNAHTDEHMVKPKLVYISNATEVGTIYTKKELRLLSEFCR EKKLYLFMDGARLGSALCSAGNDLTLSELPDLVDAFYIGGTKNGALLGEALVLCNEEL KQDFRYHMKQKGALLAKGRVLGIQFLELFRDNLYFDLATHANSMAYKLRDGLKEAGVS FLSESPSNQIFPIFANEVVQELKESYHFEIWGKVDERHTAIRLVTSWATKEEAVTAFV KDIRRILQPQ" gene 1175351..1176028 /locus_tag="Dhaf_1082" /db_xref="GeneID:7258051" CDS 1175351..1176028 /locus_tag="Dhaf_1082" /inference="protein motif:TFAM:TIGR01549" /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbt:CLH_2782 probable hydrolase" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase, subfamily IA, variant 1" /protein_id="YP_002457578.1" /db_xref="GI:219667143" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006439" /db_xref="GeneID:7258051" /translation="MTWQESECDMEKLQDSDGIIFDLDGTLWDATEPVRVSWNKALKE YGREQGLPTDELSIDQIKGVMGLQIPEIGRKLFPSFSEEARSKIMERGGEIECEYLKK HGGILYPHVEKTLATLAQRYKLFIVSNCQVGYIETFFFAHQLEKYFVDYEHPGRTGLT KGENIQLIMRRNKLKNPVYVGDTLGDAKAAQVAGIPFIYASYGFGRVENYTEAMDSFE QLLGILS" gene 1176124..1176888 /locus_tag="Dhaf_1083" /db_xref="GeneID:7258052" CDS 1176124..1176888 /locus_tag="Dhaf_1083" /inference="protein motif:PFAM:PF07739" /note="PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; Transcription regulator MerR DNA binding; KEGG: aoe:Clos_0665 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002457579.1" /db_xref="GI:219667144" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR012925" /db_xref="InterPro:IPR015358" /db_xref="GeneID:7258052" /translation="MEYTVQKLAHLAGVSSRTLRYYDEIGILKPARISSSGYRIYGQQ EVDRLQQILFYRELGMSLEGIKDMVTSPDFDGAKALREHREKLLEKREQLEQLIANVE KTIAQKEGRITMSDKEKFEGFKRKMIEENEAKYGEEIREKYGEETVEESNRKLMNMTQ EQYAEFTKLGEEVLVTLCEAFKTGDPAGELAQKTADLHRQWLTYSWPSYSKEAHAGLA QMYVDDPRFTAYYDEKQPGAAEFLRDAVFIYTGMKK" gene complement(1176930..1177520) /locus_tag="Dhaf_1084" /db_xref="GeneID:7258053" CDS complement(1176930..1177520) /locus_tag="Dhaf_1084" /inference="protein motif:PFAM:PF07665" /note="PFAM: M penetrans paralogue 2 domain protein; KEGG: chy:CHY_1703 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457580.1" /db_xref="GI:219667145" /db_xref="InterPro:IPR011654" /db_xref="GeneID:7258053" /translation="MDQEMREILNKILHGQTAMSENIGLLQKDVSSMKSDISILQKDV GSLQQDVGSMKGDISALQQDVGSMKGDISVLQQDVSSMKGDISALQQDVGSMKGDISA LQTQVAKNTLLLESARKDIQIIAEVQQSHYEQNQRAHQEILTVIDTRSSTIESAVKSI SSTLGEIQEDNQSFDTIIGRHARSIETIQRKLAKAL" gene 1178012..1179616 /locus_tag="Dhaf_1085" /db_xref="GeneID:7258054" CDS 1178012..1179616 /locus_tag="Dhaf_1085" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_1520 ATPase components of ABC transporters" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457581.1" /db_xref="GI:219667146" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258054" /translation="MILDIKKLSLYSEDRIGIVGINGVGKTTLLNLLSQKLAPDEGWV KAYGQSSTISQLEPPEHDLISQEMASKFNIPMTYSESMSGGEKTRFKLAACLSQNSTM IFADEPTSNMDLEGIELIEHYFAKYSGGLFLISHDRTLLDSLCTKILELEDGRLKIYP GNYSSYSEQKVRERERAQSEYEHYVSEKKRLERVVIETGEKSKSVRKTPRRMGNSEAR LHKMGNQKAKANLDRAKKSVETRIEQLEVKEKPQQTAKIKLDIADAQKLHSKVIIEGK GLNKAFAGKVIFQNAEFRIENEAKVALMGPNGCGKSTLLKMIINREDSIRVAPSARIG YFSQDLSILDEETSILANVMEESIHEESFVRQLLARLLFKGDAVYKKVNVLSGGERVK ASFAKILCQDFNLLILDEPTNYLDINSLEVIEDALQNYERSLLFVSHDRRFISSVANQ IMTIENHRIKMFKGGYEDYWAQQNKEGGKAKEEIEKEIFILQNRLSEVIGRISMPAKK DNVEELDKEYYAILTEVKRLKGMLEL" gene 1179789..1180064 /locus_tag="Dhaf_1086" /db_xref="GeneID:7258055" CDS 1179789..1180064 /locus_tag="Dhaf_1086" /inference="similar to AA sequence:KEGG:Amet_3947" /note="KEGG: amt:Amet_3947 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457582.1" /db_xref="GI:219667147" /db_xref="GeneID:7258055" /translation="MDYKVPHQCPICKHEMHVTKLFCTHCSTTLEGEFHTCKFCKLPD DQLLFVETFLKCRGNIKEVEKELGISYPTVRSRLDSVIQSLSNERKE" gene 1180298..1180777 /locus_tag="Dhaf_1087" /db_xref="GeneID:7258056" CDS 1180298..1180777 /locus_tag="Dhaf_1087" /inference="similar to AA sequence:KEGG:Cthe_3111" /note="KEGG: cth:Cthe_3111 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457583.1" /db_xref="GI:219667148" /db_xref="GeneID:7258056" /translation="MNIPTSLKHKPVIVSENYENVDGRYAYQSDAKGLSLGLAQWNDR GKVDISAKVWRYTGEKWSRQSEELPLHRVLDLAILVCRTKLHFREAYRYDNFYDPEKP VIDRIGLQGDAMTVAVCTDNEKINEDIKLFNQALCNDDELLGERLRTLSAILKEMGY" gene 1180781..1181131 /locus_tag="Dhaf_1088" /db_xref="GeneID:7258057" CDS 1180781..1181131 /locus_tag="Dhaf_1088" /inference="similar to AA sequence:KEGG:Clos_1685" /note="KEGG: aoe:Clos_1685 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457584.1" /db_xref="GI:219667149" /db_xref="GeneID:7258057" /translation="MDRKKELKEQYKQMRPDMGIVGVRSGKEAWCYIEGSQNLRAALN GIRFKLEAGFFPCRELMKKWQEQGGENFTFEVLEQLEYDKDETKTDYTDDLVLLLMEW EEKLLDQGFTVAKR" gene 1181250..1182530 /locus_tag="Dhaf_1089" /db_xref="GeneID:7258058" CDS 1181250..1182530 /locus_tag="Dhaf_1089" /inference="protein motif:PFAM:PF00933" /note="PFAM: glycoside hydrolase family 3 domain protein; KEGG: ctc:CTC02158 putative anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 3 domain protein" /protein_id="YP_002457585.1" /db_xref="GI:219667150" /db_xref="InterPro:IPR001764" /db_xref="GeneID:7258058" /translation="MGKRTIAIFVIIIAALVLGFLFLSQRLNPQEGNLSIPGQHDQQG NNNPAEPSEKPPEIDPLQERIQAMTLEEKVGQLVMVGVDGYEINANAQQLIENYHVGG FVLLKKNVRDSGQMLNLINTLKETNGVNRIPLFLALDEEGGRISRMPAEFKKMPSSQQ VGAQNSGALGKKMGEILGREVKGFGMNVNFAPVLDIFSNPKNKVIGDRAFGSNPELVS KVGIQTMRGIQEQGIISVVKHFPGHGDTSVDSHVGLPRVDYDLERLRNFELRPFAEAI ANDVDAIMLAHILLPKLDPDYPASFSEVLIRDILRKEMDYNGVVITDDMTMGAIVENY NIGEAAVKSILAGSDIVLVCHDFAKEEAVLKEILHAAETGKIPVDRIDESVYRVLKLK EKYALADRQKESVDVQGINAEIEQFYKDYPALKG" sig_peptide 1181250..1181333 /locus_tag="Dhaf_1089" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.631) with cleavage site probability 0.165 at residue 28" gene complement(1182651..1184243) /locus_tag="Dhaf_1090" /db_xref="GeneID:7258059" CDS complement(1182651..1184243) /locus_tag="Dhaf_1090" /inference="similar to AA sequence:KEGG:Cthe_1807" /note="KEGG: cth:Cthe_1807 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457586.1" /db_xref="GI:219667151" /db_xref="GeneID:7258059" /translation="MNTDHPKGHPTPEELLDHYIDILNENGFPEDYDTTEDEQGLYSL AKKVKTLASEPSQEFMASLWQKIEPMAATPSTINAPATANIPAATKDTLRKEGNSLKM PKKFFPWAGFAASILVFLLLFSPWSGSKQTIVMAMEESVKQLQNYHGVLEKVSTNEAG ERQVLIRTEIWSDGENYATKTQDGLLTVNNGETRWSTNPAAKEITLLPVYLDPHDFDL QKEAAKALRYPHQIIGDDTIAGRAATRIEIQPPGGLPYSLWIDQNTHLPIQLQTAMQK SLQTTYTYVSLETNTFLATDIFAYHPPQDYKVIDNNPDKVMASLAEALTASGITPVQL AETPQRMFASANRLVFDFGDTIVMQTKATTPFVPDLLATLGKAGDGPLEILPKSLRWQ QADLEILVQGERAEELAKQLSTNLDFTPQVGPLPQEGVIPVEIDREVVKNSQQQVDAG SSPWQLDPSQVAFTFVALKISPEGITGEPPLDYNALQLTDNDGQKAVIQVSEGPVKTV YLERLIRQDETGIWTVTGYVPR" gene complement(1184243..1184752) /locus_tag="Dhaf_1091" /db_xref="GeneID:7258060" CDS complement(1184243..1184752) /locus_tag="Dhaf_1091" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: gtn:GTNG_1263 putative RNA polymerase sigma factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457587.1" /db_xref="GI:219667152" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7258060" /translation="MESKIGPPASTMETWYQETVTKLYRFIYSQLQNKEETEDITQET YLRCLKQAPDALPPYPYLKQIARNLMTDRYRHKLVAQSHLEHLPEPEHPSPEEEWLTR ATLQELMNQLPSDYRQILEYRIIQGYSRKETATLMGRSESSIRGLQYRALQTLRSYIH LYQQKGGDL" gene 1184895..1185416 /locus_tag="Dhaf_1092" /db_xref="GeneID:7258061" CDS 1184895..1185416 /locus_tag="Dhaf_1092" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_1438 ECF subfamily RNA polymerase sigma-24 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457588.1" /db_xref="GI:219667153" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7258061" /translation="MFDQKKLTREIESYLIANQESIYRLAYSYVKHPEDALDVVQESI IKAISSVSTLRDSQGMKSWVYRIVVNTALDFLRKQKRLVVVDSETISTYIDEPAAGYE EGSDLDLASALEQLSPAERGRIILRYYEDLKIEEVALVLKENVNTTKSRLYATLKKLR VQMEEPMEEIKHG" gene 1185409..1186314 /locus_tag="Dhaf_1093" /db_xref="GeneID:7258062" CDS 1185409..1186314 /locus_tag="Dhaf_1093" /inference="similar to AA sequence:KEGG:Cthe_1437" /note="KEGG: cth:Cthe_1437 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457589.1" /db_xref="GI:219667154" /db_xref="GeneID:7258062" /translation="MDKQLSQLKDEYHNTSIPKELEQVVQKAIEDGKKKQQRSRLMMG RKIVATAAAAVVLLIGGINVSPTMASVIADVPGMKTIVQVLTFRDYQYDDGWHQANIE VPAISGLEESGLGQALNQKYLEENKKLYEDFMADVEEMKALGDGHMGVDSGYEIKTDN ERLLAIGRYVVNTVGSSSTVFKYDTIDKVDQVLITLPSLFKDDSYVQVISDYIVNEMK AKMKADSNLIYWVVTDENKDEVNYFEPFTQIKPEQSFYINSDYKLVISFDKYEVGPGV MGMQEFVIPTEVIADRLVSDEYVRP" gene 1186502..1186651 /locus_tag="Dhaf_1094" /db_xref="GeneID:7258063" CDS 1186502..1186651 /locus_tag="Dhaf_1094" /inference="similar to AA sequence:KEGG:Csac_1489" /note="KEGG: csc:Csac_1489 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457590.1" /db_xref="GI:219667155" /db_xref="GeneID:7258063" /translation="MIVLENVGKEFDTEFSLQNITLKVNRGEKILVSGPNGAGKTTFL KYSPA" gene 1186694..1186987 /locus_tag="Dhaf_1095" /db_xref="GeneID:7258064" CDS 1186694..1186987 /locus_tag="Dhaf_1095" /inference="similar to AA sequence:KEGG:Mbur_0982" /note="KEGG: mbu:Mbur_0982 ABC heme exporter, inner membrane subunit B" /codon_start=1 /transl_table=11 /product="ABC heme exporter, inner membrane subunit B" /protein_id="YP_002457591.1" /db_xref="GI:219667156" /db_xref="GeneID:7258064" /translation="MAMIQILVPALLASVGFVAIGLLVSLFSLKSQGRELLANVVSLP LFLPALFIGLSMTVDIAKGMSLPEVWRQVLFLFLYDVFFLAAAYLRFDANYME" sig_peptide 1186694..1186795 /locus_tag="Dhaf_1095" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.943) with cleavage site probability 0.861 at residue 34" gene complement(1186993..1187790) /locus_tag="Dhaf_1096" /db_xref="GeneID:7258065" CDS complement(1186993..1187790) /locus_tag="Dhaf_1096" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dol:Dole_2777 cobyrinic acid ac-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_002457592.1" /db_xref="GI:219667157" /db_xref="InterPro:IPR002586" /db_xref="GeneID:7258065" /translation="MIRANRHKRVIAVCGKGGVGKTAFTAMLTRSLLESQKAGDLLVI DADPAMGLPNTLGIQVEKTIGHVRDLIINTARAGIGEDRVDLSSRLDYLVLETLYESD DYAFLAMGRTDSQGCFCSVNDLLKKSIRILSERFDTIVIDGEAGLEQMNRQVMNMVDL LIILSDTSTRGLQTVEHITKMVTEDHVIDCTQLGVVFNRVINNELLLTQAAERIGIEV FGMVPQDQSIVHYDLIGQPLTELPADSLALSAIRDFVANHIVQLDCR" gene complement(1187860..1188675) /locus_tag="Dhaf_1097" /db_xref="GeneID:7258066" CDS complement(1187860..1188675) /locus_tag="Dhaf_1097" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_3486 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457593.1" /db_xref="GI:219667158" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7258066" /translation="MSIITSLMEVLPLTRHIIHEDIALAITDRTKFIAYYPAETFAMN IKVGDEIQPGDPVLEVINSGKEFYSIVPKEFFGITIKGGGFPIRDEMGQIIGAVTVAR NFEHQAQIDEVAQNIFASLQQTSASVEEIAVGSQKLAHLIENVTKLSEENYHKIKETD IIVTSIKNISSQSNLLALNAAIEAARAGGSGRGFSVVADEMRKLAQNSGEASQKVSNT LSKIKTAEDEIAKQINEISMSGQNQAAATQEITSSLQEIVSSSELLVHLAKVE" gene complement(1188785..1189540) /locus_tag="Dhaf_1098" /db_xref="GeneID:7258067" CDS complement(1188785..1189540) /locus_tag="Dhaf_1098" /inference="protein motif:COG:COG1614" /note="KEGG: dol:Dole_2773 hypothetical protein" /codon_start=1 /transl_table=11 /product="CO dehydrogenase/acetyl-CoA synthase beta subunit-like protein" /protein_id="YP_002457594.1" /db_xref="GI:219667159" /db_xref="GeneID:7258067" /translation="MAVFSQYFGKLNQYKNALTQKVDNYWTLSCFQDVAAINPWLVPG QGRKTGSSIVLKNDVLVELGSPEAGSCSMTLYTNSPHQITDGWITLMGSDITEYTPKK LPFGQVIMVGGEHLTEEDYYYLLQNLNVSEMIEGYMIRSTAESIWCRISKDAAKNGFN FHVLGSVLNWHIKQILPKVKAVEIVFVTTTKEDIEELNQISKEVGEIGRRIKERIWRE KGVDIYKCVPGGHCGACEDKTVCDTIRKIGAGR" gene complement(1189582..1190376) /locus_tag="Dhaf_1099" /db_xref="GeneID:7258068" CDS complement(1189582..1190376) /locus_tag="Dhaf_1099" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: afu:AF1959 (R)-hydroxyglutaryl-CoA dehydratase activator (HgdC)" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002457595.1" /db_xref="GI:219667160" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7258068" /translation="MIVCGCDLGSATGKAVLLKGDKILSWAVVKSARNPEITAQQVLE EALDKAGLVKSEIHYVVGTGYGRTGVSFIQDNMSEITCHARGAHWMHPNVRTVVDIGG QDCKVIALDEAGKVLEFGMNDKCAAGTGRFFEAMARVLDCTMSELSTLALNSANPANI TKQCSVFAESEVVTMINNGVKAEDIAAGIHDSIARRIHAMTYKIGIKTDVVITGGCAR NEALTKSLEKQLGVSIHQLTFNPQIAGALGAALLARDRAEKRLIKP" gene complement(1190502..1191812) /locus_tag="Dhaf_1100" /db_xref="GeneID:7258069" CDS complement(1190502..1191812) /locus_tag="Dhaf_1100" /inference="protein motif:PFAM:PF06050" /note="PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dol:Dole_2775 2-hydroxyglutaryl-CoA dehydratase D-component" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_002457596.1" /db_xref="GI:219667161" /db_xref="InterPro:IPR010327" /db_xref="GeneID:7258069" /translation="MTNAAKTGVERTYEYKERINGILGMMEQAPAEQRNPVLEGLLRL IMETNERTIDCAENGKPFVSTWYGNAPEILTAMDIHFIVPVFDILLHEYFTDLYDVKE ADKISLPDDICSLIRFGAYAIENKLLPRPTAIISMLEPCDAELMLHQYYQSSEHWGGV PTFGLDPAYGSTDEDFMYFAGELKRLIHFLVEITGQKYDVDKLRKVVAETNTQYELWA EYNELRRVTPCPHGSFQGSVPLWTLTQFISSGDPRATELIRMMIMDAEAKVKAGIGAV PNEQIRILWADLAPQWGDLLAPWLAEEWGANVVMDYQGYSPYTHIDTTSEDTMLYGLA RRALHEVPMIRQGRGTVEVMIEDMTRIIKDYTINCVFWPGHMGHKDVSGSVHFMQELC RSLNVPLLCLTTSLFDERYTPLDKVKQQMSEFFEATGWSKNSST" gene complement(1191815..1192954) /locus_tag="Dhaf_1101" /db_xref="GeneID:7258070" CDS complement(1191815..1192954) /locus_tag="Dhaf_1101" /inference="protein motif:PFAM:PF06050" /note="PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dol:Dole_2769 2-hydroxyglutaryl-CoA dehydratase D-component" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_002457597.1" /db_xref="GI:219667162" /db_xref="InterPro:IPR010327" /db_xref="GeneID:7258070" /translation="MNTLKTNAMEIFKQAVSTLNNPEVQGWKQQGGKVVGYFYSYIPE ELITAAGLLPYKIRGIGSPGAAMADKYFTHNVCSLVRDTFELVLKGECDFLDGVINFN GCDHIRRISDNWQSLENNPCFHFLVLPKKVGKEQTERYREELVSLKASIEKRFNLVIS EDKLKEAIRLHNKKRQLQRRLYELKKRENPPLSGAETLTVMIAGTVMPVARYNRLLAE LIDELSISEGKKPNARLMLIGGELDNPELLKILESQGGMVVSDTMALGAREIACDVSE TEDGLTALARYHMEDKPPCPRLYGTFQERFDFIRKTAREYQVDGVISLRFLLCDIWGF EQNDIAEILRTEKLPYLKLETEYALTNAGQLKTRVQAFVETLGEV" gene complement(1193156..1193536) /locus_tag="Dhaf_1102" /db_xref="GeneID:7258071" CDS complement(1193156..1193536) /locus_tag="Dhaf_1102" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: aoe:Clos_2101 FMN-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002457598.1" /db_xref="GI:219667163" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7258071" /translation="MKKIAINKIVAMILSVACLISVVGCSAESGADSSKKSGYQDGTY EGISPNGIGGEIAVAVEIAGGKIANVKVTSHGETEGIGTLAVDQLPGKIVEAQSTEVD GISGASVSSAAIKEAVNDALIKAK" sig_peptide complement(1193156..1193239) /locus_tag="Dhaf_1102" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.657 at residue 28" gene complement(1193582..1195378) /locus_tag="Dhaf_1103" /db_xref="GeneID:7258072" CDS complement(1193582..1195378) /locus_tag="Dhaf_1103" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002457599.1" /db_xref="GI:219667164" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7258072" /translation="MSHFTRRDFLKGATATAAGVALTGILTGCSSASVGTGNSDPVAP ADSASTGTPTKSTKWYDEAYFKKPASITDIKEKFDVDVVVVGAGNGGCIAAVSAADLG AKVAWVEQNAGPIMWAGEIHALNSKVGKEKYGITFTEAEKNEIVNDICRYASYEVDQR LIKLWADNSGRTMDWFSKKMAAKGVSMHVETDMYKSDMYRTNNRGEHCAYKGEWVEMG PKKMGSEVANPIWVEIATEMGVQKFFEHTALQLLQDSSGKVNGIIVQRKKDNAYIQIN AAKGVIISTGGYSGNTEMMDALRYRCKDNVVNNLGGAGHNGDGIKMAMWAGAAIDRNH GGGVAFDRAAVDLDHHTGEPYTSGLDDMWWPGSQPWLAVNTHGERFMNEKAPYDSKIH GASKQPKQIWFQIFDSNYWEDVNAFHTTICSRVVAAPGARNSEVLPGVFPCQTKEEFD KAYMEPALKSGKLKKADTLEDLAKQLGLPADALAATVKRYNENAAKGFDADFGKDPGS LRPVAQGPFYGIALGNWLLCTFNGVRINTNIQAINENGDPIQGLYVTGNDSGGFFANT YPQYYGGLAHGRTTCFARLAALHAITGSIYES" sig_peptide complement(1193582..1193680) /locus_tag="Dhaf_1103" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.630 at residue 33" gene complement(1195568..1196464) /locus_tag="Dhaf_1104" /db_xref="GeneID:7258073" CDS complement(1195568..1196464) /locus_tag="Dhaf_1104" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC3409 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457600.1" /db_xref="GI:219667165" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258073" /translation="MDFFDVQCFLSVAKNLNLSLAAKEMFITQPAMSKKISALEEDFG VKLFNRTRHKVELTSAGKSVQKNFAYILDCYENTKIEAKKIGISEYNHLSIGYHGPTE WAKMNDVVQEFHKRHPHIEIDVVVGDWGPLILDLINGKLDVVFSERSEILDVTILDSI FLFRDFAALAVSKSSPLAQYDQIKPELVKNEKIIMTNNKGAARSLKYIIECLGKAGFD MENAKLADFYETTIAMASAGMGVAPIPRSFKIAGHQSVTYVDIDSDKIPMDFVLAWHI NNEKPALHLFKDFCKQHEWPLT" gene complement(1196572..1196973) /locus_tag="Dhaf_1105" /db_xref="GeneID:7258074" CDS complement(1196572..1196973) /locus_tag="Dhaf_1105" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457601.1" /db_xref="GI:219667166" /db_xref="GeneID:7258074" /translation="MKMNGNETEECCHDHQHHQTEQRSDNIESHRHNDALVCSGNRNI IGDLEVVKKKLRDEMGMFAEWVEKRDGIIGHIKASIEVSGPAFVLSTTGGEVSSREVS STTIHVSIVVIVFQMDKQKTEDQIEALLDKL" gene complement(1196978..1197670) /locus_tag="Dhaf_1106" /db_xref="GeneID:7258075" CDS complement(1196978..1197670) /locus_tag="Dhaf_1106" /inference="protein motif:PFAM:PF02492" /note="PFAM: cobalamin synthesis protein P47K; KEGG: mbu:Mbur_0818 cobalamin synthesis protein, P47K" /codon_start=1 /transl_table=11 /product="cobalamin synthesis protein P47K" /protein_id="YP_002457602.1" /db_xref="GI:219667167" /db_xref="InterPro:IPR003495" /db_xref="GeneID:7258075" /translation="MRFLAELVYFMNLAGKILGLIYLRRRMHVKIIILGGFLGSGKTS VLLQLAKYLITQERDNKSEIKVAILENEIGTVGIDDKILANAGFTVENLFAGCVCCTL AGELVSSVKKMQNELNPAWLIIEATGVAFPGSISKAIFEAIGVGAYILTIVDAKRWRR LVSAMEPLVAGQLEESSQVLVNKKDLVNASELAQVKISVQEYSRAAKVICISAKEEIP VQCWQDMISEMG" gene complement(1197800..1198432) /locus_tag="Dhaf_1107" /db_xref="GeneID:7258076" CDS complement(1197800..1198432) /locus_tag="Dhaf_1107" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: csc:Csac_0423 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002457603.1" /db_xref="GI:219667168" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258076" /translation="MAKVNEVKISVEMGKTKIVPGLVQAALDEGNTAKELLQAMVDSM SVVGDKFSAGEIYVPEMLLAAKAMAKGVEVLKPHLTGDASASLGTCVIGTVAGDLHDI GKNLVGMMIESAGFDMVDLGVDVPASKWVEAIKENGNVTLVACSGLLTTTMPALKEAV QTIKESGLTGFKIIVGGAPVTQAYANEIGADGYAGDAGSAAIKAKELVNV" gene complement(1198481..1199284) /locus_tag="Dhaf_1108" /db_xref="GeneID:7258077" CDS complement(1198481..1199284) /locus_tag="Dhaf_1108" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002457604.1" /db_xref="GI:219667169" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7258077" /translation="MIIIGEKINGAIPSVAKAIAEKDVAFIHNLAKIQSNAGADFIDV CASTDTSIELETLKWLIDLVQEVSDTPICIDSPQAQTCVDAIKFCKRSGLINSVSGEG DKIDVVFPVIADTQWECVALLCDDTGIPKTAEKRLEVFAHIMKRAKEFNIAPSRLHID PLVEMLCTSEEGINMIMDVIREIKRQYPDIHVTGGFSNISFNLPARKLVNQAFCVLAM NAGMDSGIIDPTNQDLIGMIHATEALLGQDEYCMEYIGAFREGRFGQKK" gene complement(1199651..1201198) /locus_tag="Dhaf_1109" /db_xref="GeneID:7258078" CDS complement(1199651..1201198) /locus_tag="Dhaf_1109" /inference="protein motif:COG:COG2508" /note="KEGG: nth:Nther_1023 putative transcriptional regulator, PucR family" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, PucR family" /protein_id="YP_002457605.1" /db_xref="GI:219667170" /db_xref="GeneID:7258078" /translation="MKLCMGIIEDGISGDIIYKNYLNTDIPFNLERAEMYCESTKVLN AGVLNIAHAENLPEEMIVQEGAALICIGMPAELYTKSPLILLVLDQSKKVAELSNEVN RIFFEYNSLELRLHEAVNKGKSIQYLVEQMAQFLNNELVVMNAEFKLIGQSNSTIHMC EISGIKQPDSHGRLSTEHVEFFKNDLIYSNVKNMREPFIYEPSIFICRVICMNVFFQD DFVCRVVIAEDRSTFRGYEAGLLHFFTSFIQLVYDLAGYSGDIMPREHMVEIFSALIS GESIESWRLKNSVSQHGWNYDGPFLCASIMPSDRDYYNRTIPYYCQMINRDFKGCCAF EYERKIVCIVNLEYYNGSGECFNSVYLETLRDGYFRVGYSNVFTSIVDIQAHYVQAKI SLRIGLDQFPSRWYYKFSDIVLFYMESKLTEELDGQFLCSPKIIGLDSYDRANSSDYL HTLKVYLDNQMNAVKTAKDLFIHRATMVNRLERIKELAGINFKDPDDILYIKISIRLF YKADRRG" gene 1201386..1202402 /locus_tag="Dhaf_1110" /db_xref="GeneID:7258079" CDS 1201386..1202402 /locus_tag="Dhaf_1110" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mta:Moth_2111 uroporphyrinogen-III decarboxylase-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457606.1" /db_xref="GI:219667171" /db_xref="GeneID:7258079" /translation="MTITKRENYLMAMNHEKPLWTPVFLYDNAAVGFCAAPGPWFEKG PVGGGYDGFGVRWITPESGSGTPIPAPNEYILTSETVQDWKKLVKFPNVNDFDWEDYA KAELTPYNRNEVTIDFGSGNGPFERLAALMGFEEALIALLEEPEACDELIGAIVDYKI EVAEKVAKYYKADYFTNYDDIATERGLFMSPSTFRKIIKPHTKRMYDAIRSLGMQPIQ HTCGYAQDVIEDFIEMGAQAWTSVQPTNDIVALQKKYGDKISFIGGFNTNGRAAQVDA TDEEIVKEVYRTLDTYGPQGSFIFFAYKLANTLDMNKFMAECMRAIGPAIARSMENAG LSQV" gene 1202741..1204204 /locus_tag="Dhaf_1111" /db_xref="GeneID:7258080" CDS 1202741..1204204 /locus_tag="Dhaf_1111" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cth:Cthe_0266 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457607.1" /db_xref="GI:219667172" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7258080" /translation="MGDQTVMEEHVKFINFSFTLIYWFAFLATLILSLIGIFSNSYSA IILAVGATFQSILIYFKKPADIVSALIILVGFAAPSNIAMDIPASAGVYGTMFLCIAA TYLSGRLIAISGIAEICFLLFIGIVQRAYNFNEFMASVFGMVFVVCFLLFLTLAGNKI IKRVIAKEAEAKGHLTNLSKTLDTILLSTASLDKYVGNCYQSIASVKESSNTLTRAIQ EITHGVISQTDSITHINIGIKDANQEFIRINEISKQLTEVSQKASEVVSAGSEKIHLM DNQMDIIKETSTKACATVQELDSNMEEVNRFLSGIKTISDQTNLLALNAAIEAARAGE SGKGFAVVADEVRVLAEQTNIAVQQINNIINQINAKTKNVLDEVNRGNIVAEEGGIAV KYVSDSFESIHLSFMNIERAVSNQFSKISETWTLLESLQDEVQSIASISEEHAAATEE MNAISEEQAANIEAISNLMGDVKQANVDLLDAVNLKN" gene 1205064..1205564 /locus_tag="Dhaf_1112" /db_xref="GeneID:7258081" CDS 1205064..1205564 /locus_tag="Dhaf_1112" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bsu:BSU14730 hypothetical protein" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002457608.1" /db_xref="GI:219667173" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7258081" /translation="MKTIEEIYKTYEKPIFHYFYGLTGNTHLAEELTQETFFQVLRTF SGFRGEAQVTTWLYKVARNVYSMWKRKQKTSFPLPESDVLKGPASYEPDTVLEFKEKL TLTGKVLQELPENYREVFWLREWHELAYEQIAVIIGKSVPWVKVTLHRARLQFRKNYA EKEGKE" gene 1205561..1206685 /locus_tag="Dhaf_1113" /db_xref="GeneID:7258082" CDS 1205561..1206685 /locus_tag="Dhaf_1113" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: nth:Nther_1064 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457609.1" /db_xref="GI:219667174" /db_xref="GeneID:7258082" /translation="MKEPTSLPCELIQDILPLYVEEDVNPKTKDLVAKHLEECGSCRD FLKELKNEEPVLDDIPENLPEPDTFRKWFKRLRAGAIAGLIILILAAVGIGVVSYKAG TVAEKETIGTKDVVRVLKKAGLSLKASQSPVIDPNECLLGDIRPKVYNLDEEGFSQLY IYEFESTLARKKTIEGIERQDNPFMQRMSHRAYAAKNMVLVMTFNVAQENMENMEQAE KIFAQLAPITFTLGKTVFYDLNQGEKWVLYGEGEHWEAKLVVAAFEEKWIDEKGYKQS RYYVNKTPFINYKGNPEEIEKISYGFQHGLHGQRSGFEGGFRQGNFDEEQTHVYGGSP IFWGEFGFSQTYIVDKNEPGQFSAEWNGEEESFELTLQES" gene 1206839..1208086 /locus_tag="Dhaf_1114" /db_xref="GeneID:7258083" CDS 1206839..1208086 /locus_tag="Dhaf_1114" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lsp:Bsph_1346 hypothetical protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457610.1" /db_xref="GI:219667175" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258083" /translation="MVLNNKPEWKKNTILFLTSQTISLFGSSLVQYAIMWYITLETQS GIMMTISIICGFLPTFFLSPFAGVWADRYNRKRLIILADSMIAISTLILALLFFAGYK MMWLLFVMSAIRALGAAVQMPAVGAFIPQLVPEDKLLRVNGINGSIQSAVMLVSPMLS GALLTFTTIEAIFFIDVITAALGVSVLLFFLHVPAHRKAQEAQTVSYFADMSQGLKYI REHAFLKSFFVFCALFMIMAAPAAFLTPLQVARTFGDDVWRLTAIEMTFSVGMMIGGI LMATWGGFKNRIHSMALGTLGFGVCTVALGVIPVFWLYLVFMAFVGVSMPIFNTPATV MLQEKVEPDFLGRVFGILSMISSTMMPLGMLIFGPLADSIAIEVLLIGTGVIMVLESV FLFGNKVLLEAGRPAVKPIEPVN" gene 1208149..1209054 /locus_tag="Dhaf_1115" /db_xref="GeneID:7258084" CDS 1208149..1209054 /locus_tag="Dhaf_1115" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: amt:Amet_0979 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457611.1" /db_xref="GI:219667176" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258084" /translation="MDFRQIEAFVSVYRLRNFSRAGKALFLTQPTISSHISDLETELE VKLFDRSSREVMPTGAGDIFYQYAVNLLETRDCAISSLNQHNRQIEGRLEIAASTIPC QYLLPKLMIGFQKINPNIRFLIHQGDTNQVIKKVREKKYQVGIVGTRTDEDKLDYEIL TKDRLVLIAARDYIEAADSPCIAVESLLKKQFILRERGSGTRDTFETALKEKGIDPDT LKVVAEMNNTEAIKHAVSEGLGVAVVSSLSVGNELKSEAFQAFSIDGLELERSFYLVT YRNQPLSPSVAAFREFILNYYSNHA" gene complement(1209194..1210486) /locus_tag="Dhaf_1116" /db_xref="GeneID:7258085" CDS complement(1209194..1210486) /locus_tag="Dhaf_1116" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_0668 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457612.1" /db_xref="GI:219667177" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258085" /translation="MFSIGMMQLILATAMPFIVGEIGGSALYDWVFSSYMLASIVTIP LFSKFADIYGKRKFFILGMCFFALGSLCGGLATSMPHFIGARVIQGVGAGIISPVSMA MVSDMFPAEQRGKMIGLFGLVQLLSNLLSPPLGSFITRELGWSWIFFLNLGMIAFSML LVLLGKTVQENKSSMKLKEIDILGGLLFGGFCLLAVTLANAFSHQGRFGLLESALLPA LLFTGAMLVINERKQKNPIIKMEFLKTKIIRRSLISAILSGAIMYGLAALLPLCGVML SRQGFPLDESKTLLIFMVSLTSGLLGGSRLSKLQLGQVPRYLWLLLSVSSVFLLYSLY TVKLVPFCLCLILMGLCAGGIMATFLINSQNAVESADRTVLSGLVQLGRYFGASIGVT LLIGMLPEVGLTSGVGEFTGSFGLLVILCLAGVLNELL" gene complement(1210530..1213205) /locus_tag="Dhaf_1117" /db_xref="GeneID:7258086" CDS complement(1210530..1213205) /locus_tag="Dhaf_1117" /inference="protein motif:PFAM:PF01326" /note="PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: cbe:Cbei_2066 phosphoenolpyruvate synthase" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="YP_002457613.1" /db_xref="GI:219667178" /db_xref="InterPro:IPR002192" /db_xref="InterPro:IPR008279" /db_xref="GeneID:7258086" /translation="MEEHYTLFFNDIDQRDLPLVGGKGANLGEMTKAGFPVPYGFCVT TASYQEFLRANNLPAYIAETIKDAGLETIKTIGSAIRERLRMAEIPQSVKEAVLHALQ KSGAQHYYAVRSSATAEDLAFASFAGQQDTYLNIKGEEGILDAVRNCWASLFTDRAIL YRMQNGIDQEKVYMSVVVQKMIFPEVSGIMFTADPVSGHRGLISIDAGYGLGEALVSG LVSPDIYTFNKASGQIQSKSIAEKKLAILPVPGGGTEKVAITGEKATRQVLDDSLIQD LAELGKAIEQHYGCPQDIEWCLSSGLSADGSPTLSILQSRAITSLYPLPTPLPQDDAL HVYVSLNHIQVMTDPISPLGIDMLRLMLPFDKGTRSAEEYQRVKEAAGRVYIDISEIL ALKTARKAFPLFFKNVDALAAEAMAELINRPGFTGRIKKDEKTVKAFKSFFKPIVFKA IQAILFKRPEGAIQSIHDYIENRVRDAEKAIEQAKPGTDRLEAIRRTADFTADFKNLL PRLIPAIVSFKALEHWEEKLLGSRNYTSILVTGLEGNITTEMGLLIGDLADQVRRSPD LIHEFENEDYGTLFTRIHNLPGHETFKEAFRTFMAKYDMRAAGEIDMAKDRWIEHPEP LAKSILAIVHSAPEGIHRQEYQLTKEKALKAADDLVKEVADKHGRLKAKLVRRLIRIV RNYLPVREHPKYLIMKLILLCKRAFLAEAKYLVEKGLLATEKDIFYVNFWELYQAIQD NHSLTGLVEQRKEEYRHYKKLSAPRLLTSDGEEPKASYQREDLPVGSLIGMPVSSGRV EGIARVVTDPAQASVNKGEILVAPFTDPGWTPLFINASGLVMEVGGLLTHGTVVAREY GIPAVVGITDVTKKIRTGQKIRVEGDAGYVLILDE" gene complement(1213218..1213823) /locus_tag="Dhaf_1118" /db_xref="GeneID:7258087" CDS complement(1213218..1213823) /locus_tag="Dhaf_1118" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cbe:Cbei_2065 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002457614.1" /db_xref="GI:219667179" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258087" /translation="MMNRRERKKEETKSSIIHCALELFRAKGFPETSMEEIAENADIS KGTLYNYFENKESILSAYVQSAIMDFGEEMEAQLKEHRGIAAQLRLLLDFRHDFFGKD PELTAIYLSFRMQTLFNIPSANPFNHPHRSGLEKVILNMIAEAQKNGEVRKDIPTLVL ARNFQLITVNYFISCQFVQEPAELEQLREQLIEVLLSGAKA" gene 1214029..1214400 /locus_tag="Dhaf_1119" /db_xref="GeneID:7258088" CDS 1214029..1214400 /locus_tag="Dhaf_1119" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: ckl:CKL_2289 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002457615.1" /db_xref="GI:219667180" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7258088" /translation="MAATISTDLIRGHTDTVILNVLRQGDSYGYGIYKTIIELSGHQY ELKEATLYTAFRRMEQEGCIVSYWGDETSGGRRKYYRITDKGLETYEKNIKDWCLAKK ILDKLVLNRIDQEGMGGHETD" gene 1214387..1215046 /locus_tag="Dhaf_1120" /db_xref="GeneID:7258089" CDS 1214387..1215046 /locus_tag="Dhaf_1120" /inference="similar to AA sequence:KEGG:CKL_2288" /note="KEGG: ckl:CKL_2288 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457616.1" /db_xref="GI:219667181" /db_xref="GeneID:7258089" /translation="MRQTEHELEHKISAYIDALFAGVGASQQLFDLKEEITTNLNEKT LDYKNRGISEDQAFKEAIVSLGDLSGLVAEMRQIGQDKAKQAVYSTMTARISLAGTIA GSLIILFGFFNVAMLYFMKLDAVSISGSGIFIVAGGALLTYSLLTRETRQKYAMNKIR AGLYALSVGLLLFGMFSAAVAGFATGEVFIAIASLMMFFLVGFGVFLFLILTGPDRRK R" gene 1215070..1215633 /locus_tag="Dhaf_1121" /db_xref="GeneID:7258090" CDS 1215070..1215633 /locus_tag="Dhaf_1121" /inference="similar to AA sequence:KEGG:CLI_1741" /note="KEGG: cbf:CLI_1741 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457617.1" /db_xref="GI:219667182" /db_xref="GeneID:7258090" /translation="MYVYLVFSKTGTWLSRVLTLFTGEKYVHTSISLDHDLKTMYSFG RVTPNNPFSAGFIRENFNKGVFLKKSNCECIVYRIKINEIQHAMLINELSRFIAADQF LRYNFLGLFTAAMKIPMRRENHYFCSQFVSELLMKINLLQNPFPPELTKPMDLYHIEG KEEIYQGFTWQFGAASLGSANRGCVAK" gene 1215803..1216993 /locus_tag="Dhaf_1122" /db_xref="GeneID:7258091" CDS 1215803..1216993 /locus_tag="Dhaf_1122" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: wsu:WS1520 methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457618.1" /db_xref="GI:219667183" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7258091" /translation="MNNRLMNISTIGSSQAVADELHRVTSLYFGHKVQMRNKYYIKKV PANLNDDLYIVLPTRVEEASKYVVRQKIFPLELVPEDLFYIRVARLPAGANVVIFNNN GSQAKAIEQYLHEHEVDHVNYSLLPFTEMTNDQAKEILQQADYIVGMQGYVGPKGVLW THYGQYFDKHRVSIIGFNRAIKPEDILHLTEKVVEFNFNQILSNTQGISFDLNAHIQE VMSSMEGIVNFMQDTNSSIHEAHDRIQRQVERIDETIEVTNDLNTNTQKIDELINTIK QISDQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSKQSIQFIQQLVANIKQT NHRTVPLLHFLAGEIKDMDGIINKILNSSTINQTEAKSISEALNRVTKISEQLTNEFI AFSF" sig_peptide 1215803..1215859 /locus_tag="Dhaf_1122" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.975 at residue 19" gene 1217109..1217726 /locus_tag="Dhaf_1123" /db_xref="GeneID:7258092" CDS 1217109..1217726 /locus_tag="Dhaf_1123" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_1498 copper amine oxidase domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457619.1" /db_xref="GI:219667184" /db_xref="GeneID:7258092" /translation="MFKFKISRTLMLGMCLTLAASAPVYASEDRDMGQVSGVQPALAS MMVEPSDPVVSPGQEVDPALAELNKGIYQFIFEEHRGEFGDKGFSVTHTGLMSDYVEI GIQPYSEESAQYLYDRFGKEKVKVVEGEFASPLAAAAGGAEPAVNPLASGGETRNEAQ AEGVSAKSDEAQGEGSDAMLYGLGAAVVLGGGAFGVKRTLSRSKK" sig_peptide 1217109..1217189 /locus_tag="Dhaf_1123" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 27" gene 1217800..1218435 /locus_tag="Dhaf_1124" /db_xref="GeneID:7258093" CDS 1217800..1218435 /locus_tag="Dhaf_1124" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457620.1" /db_xref="GI:219667185" /db_xref="GeneID:7258093" /translation="MFKRFLIILASVLLLAGCAAKTPQDQNADLDKPGQQVGTDLPVG DQGQTGPGVGQGNETEQSASLGNIHLGDPFSQAEKILGKDYQETFYDEPGHFPEAWYS REYKQGIRLIVGKDSGKVLEIDAIAADFATNLGAKVGDTAERIKDVYADKYKPFESRH GEGPLEGFYLLEDGQLMIFDYNREDNQLVNTNVKPDSKVEMIRLTQSQYLD" sig_peptide 1217800..1217862 /locus_tag="Dhaf_1124" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.730 at residue 21" gene complement(1218548..1219201) /locus_tag="Dhaf_1125" /db_xref="GeneID:7258094" CDS complement(1218548..1219201) /locus_tag="Dhaf_1125" /inference="protein motif:PFAM:PF03358" /note="PFAM: NADPH-dependent FMN reductase; KEGG: mba:Mbar_A2580 iron-sulfur flavoprotein" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_002457621.1" /db_xref="GI:219667186" /db_xref="InterPro:IPR005025" /db_xref="GeneID:7258094" /translation="MKVIAVNGGPRKQWNTATLLHKALEGAQSVGAETDLFHLYDLNY KGCISCFGCKRKNSSRIGHCVLKDELTPLLEEVLKCDALLLGSPIYFGNVTGAMRSFL ERLFFSLLSYNEGQRTFFPRKVASGFIYTMNVPEDFLPQLGYEAVFKANARSLELLNG PSEYLLATDTYQFDNYSNYEASRFNEQHKAQVRQERFPQDCRQAFDLGARLSGRNAE" misc_binding 1219409..1219483 /note="gcvT element as predicted by Rfam (RF00504), score 52.55" /bound_moiety="glycine" gene 1219634..1219936 /locus_tag="Dhaf_1126" /db_xref="GeneID:7258095" CDS 1219634..1219936 /locus_tag="Dhaf_1126" /inference="protein motif:PFAM:PF01842" /note="ACT domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457622.1" /db_xref="GI:219667187" /db_xref="InterPro:IPR002912" /db_xref="GeneID:7258095" /translation="MSLEPTRDTSNRVIISILGKDQIGIIAWLTGRLAEKSINVLDLS QTILQGFFTMIMIVDVTQSTASSLTELTKQLQSEGEARGLKVNVQHEDIFEFMHRV" gene 1219948..1221315 /locus_tag="Dhaf_1127" /db_xref="GeneID:7258096" CDS 1219948..1221315 /locus_tag="Dhaf_1127" /inference="protein motif:PFAM:PF05167" /note="PFAM: protein of unknown function DUF711; KEGG: hmo:HM1_2099 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457623.1" /db_xref="GI:219667188" /db_xref="InterPro:IPR007841" /db_xref="GeneID:7258096" /translation="MKMHLAPQEILQTIAMVENENLDIRTITMGISLLDCAGDDVQQV EQKIYDKITRQAEHLVSVGESLAARYGIPIVNKRVSVTPVALLGSNFNPEEMVRLAKA LDRAAKTVGINFLGGFSALVQKGLTKGDRSLIEAIPQALAETEFVCSSVNIGSTKSGI NMDAVLRMGEVILDSARRTAAQDGIAAAKLVVFCNAPEDNPFMAGAFHGVGEPEAVIN VGVSGPGVVAHAVKKSPQADLGELANLIKRTSFKITRMGELIGREASQALQVPFGIVD LSLAPTPAVGDSVAEILENMGLERCGAHGTTAALALLNDAVKKGGAMASSHVGGLSGA FIPVSEDAGMIEAVEVGALSIEKLEAMTCVCSVGLDMIAIPGDVEPETIAGIIADEAA IGMINKKTTAVRVIPAIGKKVGDRVEFGGLLGSAPVIKLNPFSSREFIRRGGRIPAPI TSLSN" gene 1221452..1221787 /locus_tag="Dhaf_1128" /db_xref="GeneID:7258097" CDS 1221452..1221787 /locus_tag="Dhaf_1128" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: ckl:CKL_0346 hypothetical protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002457624.1" /db_xref="GI:219667189" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7258097" /translation="MAQIMKNIEFSQVLDLKELITYQQGQVISRTLAQTPIVSITLFS LDEGEGISTHTTSGDAMVQILDGEAEITIGDKVLIVKEGETLIMPSDVPHGLEARKRF KMLLTVIKY" gene 1221841..1221921 /locus_tag="Dhaf_R0027" /note="tRNA-Ala3" /db_xref="GeneID:7258098" tRNA 1221841..1221921 /locus_tag="Dhaf_R0027" /product="tRNA-Ala" /db_xref="GeneID:7258098" gene 1222242..1222433 /locus_tag="Dhaf_1129" /db_xref="GeneID:7258099" CDS 1222242..1222433 /locus_tag="Dhaf_1129" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457625.1" /db_xref="GI:219667190" /db_xref="GeneID:7258099" /translation="MRDLEKLIDEVNGSMAMEGMPLTQSDKDRIRYCAGNDKLVEKTI AELVKKHTAAHDYDHEQQL" gene 1222417..1223025 /locus_tag="Dhaf_1130" /db_xref="GeneID:7258100" CDS 1222417..1223025 /locus_tag="Dhaf_1130" /inference="protein motif:PFAM:PF02661" /note="PFAM: filamentation induced by cAMP protein Fic; KEGG: hmo:HM1_0604 cell filamentation protein fic, putative" /codon_start=1 /transl_table=11 /product="filamentation induced by cAMP protein Fic" /protein_id="YP_002457626.1" /db_xref="GI:219667191" /db_xref="InterPro:IPR003812" /db_xref="GeneID:7258100" /translation="MNNNYDYSYEWDHKYCYPHSNVLINKLRIEDAEKLRIAEREITS LRIANAKLNVIRGDFDLLHLKTIHKYVFGDVYEWAGKLRCVNVAKGNMFCNYQFIEPN AHILFRKLKEENYLKDVPRDEVPLRLAFYLSEINALHPFREGNGRVQRLFIEYLAENI GYQVDFSQVTDKQMVEASAASFLCDYAKMNEILMAITEPLSE" gene 1223406..1224320 /locus_tag="Dhaf_1131" /db_xref="GeneID:7258101" CDS 1223406..1224320 /locus_tag="Dhaf_1131" /inference="protein motif:TFAM:TIGR00027" /note="TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: cbk:CLL_A3460 methyltransferase family protein" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_002457627.1" /db_xref="GI:219667192" /db_xref="InterPro:IPR003455" /db_xref="InterPro:IPR011610" /db_xref="GeneID:7258101" /translation="MEQKSVTALVSTFSRAYHAENNEVKIFNDSMARLFLSEEEYGQI SKNMAEGIGFFNPSFKGTPDEALRWVVDNQLSPSPLGRAAFTEKALYAAVSSGARQYL ILGAGYDSFAYRQPAWAKEIQIFEIDHPATAKDKRAKLEKAKLTIPDNVQYITADFMK QEWQTALTQNIKFNKNQTSFCSILGVVYYLSVQTFVDLISGLSALLPVGSSIVFDYPD ENTYTDKGGERAKKQAMLAATANEKMLAGYSYEDMENVLSSHGFLIYEHLTPGEVTGQ YFEAYNHANPLHPMTAFDNVNYCLAVRK" sig_peptide 1223406..1223465 /locus_tag="Dhaf_1131" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.770) with cleavage site probability 0.767 at residue 20" gene 1224485..1224859 /locus_tag="Dhaf_1132" /db_xref="GeneID:7258102" CDS 1224485..1224859 /locus_tag="Dhaf_1132" /inference="similar to AA sequence:KEGG:Cphy_1607" /note="KEGG: cpy:Cphy_1607 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457628.1" /db_xref="GI:219667193" /db_xref="GeneID:7258102" /translation="MDINKFVTQYWNHIATQNEEELPKYFHEDACIRWHNTNEQFNVK EFLRANCDYPGSWSGEVERIEHIGNSVITVTRVWSKENSFHVASFFEMSEDKIKVLDE YWGDDGTAPQWRIDKNIGKPIR" gene 1225014..1227365 /locus_tag="Dhaf_1133" /db_xref="GeneID:7258103" CDS 1225014..1227365 /locus_tag="Dhaf_1133" /inference="protein motif:PFAM:PF00694" /note="PFAM: aconitate hydratase domain protein; KEGG: cpy:Cphy_2458 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457629.1" /db_xref="GI:219667194" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR006162" /db_xref="GeneID:7258103" /translation="MIRLIENGIYLIQGKQALEVKDTNVLWDLNGQTVDPEQLSTEEF PDREKARKNTMAYQILSRHNASGNMDDLKIRFDALTSHDITYVGIVQTARASGLKEFP IPYVLTNCHNSLSAVGGTINEDDHVFGLSAAQKYGGIYVPAHQAVIHQYMREMMTGCG SMILGSDSHTRYGAFGTMGVGEGGPELVKQLLSKTYDVKYPGVVAIYLEGKPRPGVGP QDVALAIIGAVFKNGFVKNKVMEFVGPGIENLSVDFRSGIDVMTTETTCLSSIWTTDD QVKKYYDIHGRSEAYAKLEPGEVAYYDGMVVVDLSKIVPMIAMPFHPSNTFTIAELNE NPYDILKQVEAEARKQLDNPRIKFNLTDRIVKGRLHVDQAIVAGCAGGSFENIMDVAA ILDSQSVGNDYLSFSVYPSSQPIYYELIKRGAIGKLMQAGTLIKTAFCGPCFGAGDVP ANGQFSIRHTTRNFPNREGSKPGELQISSVALMDARSIAATVIRGGRLTPATEIDFTP AEADYEFNADIYAKRVYQGFGKPLLKSELKFGPNIADWPEMIALPENILLKFAAVIHD PVTTTDELIPSGETSSYRSNPLRLAEFTLSRKEPQYVERAKGVQALEKERRSLVAGAK DLTGLSDGLRGLGERILQAAPAYTQLQEALANTGIGTVIYAVKPGDGSAREQAASCQK VLGGWANIAQEYATKRYRSNLINWGMLPFTWDNDPEIVFHVDDVLFVPGIRQSIISEA ETVTGQLFTAHGIKEVKLQLNPLTQDEREIILQGSLINYYAAN" gene 1227572..1229113 /locus_tag="Dhaf_1134" /db_xref="GeneID:7258104" CDS 1227572..1229113 /locus_tag="Dhaf_1134" /EC_number="4.1.1.49" /inference="protein motif:PRIAM:4.1.1.49" /note="PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase" /protein_id="YP_002457630.1" /db_xref="GI:219667195" /db_xref="InterPro:IPR001272" /db_xref="InterPro:IPR015994" /db_xref="GeneID:7258104" /translation="MDQIVHHNLEVSELVDMALERGEGTLASSGAFRVSTGKYTGRSP LDKFIVDEPSVHERIDWGSVNRPIAQEYFEKLYDEVQAYLEAKEEVFIFDGFAGADEE YRLPIRVINEFAWQNLFVHQLFIRPTPEELDNHQAQFTIIAVPSFKADPEVHGTHSEA FIICSFEKRVVLIGGTHYAGEMKKSIFSVMNYYLPLREVMPMHCSANIGADGDVALFF GLSGTGKTTLSADPERCLIGDDEHGWSKNGVFNFEGGCYAKCINLSEEKEPQIWQAIR FGTVLENVVLHPDTQVADYDDATLTENTRAAYPIDYIEGAVIPGVGGQPKVIVFLTAD AFGVLPPIAKLTKEQAMYHFLSGYTSKLAGTERGITEPQATFSTCFGAPFLPLAPQVY AEMLGERIDTYGTRVYLVNTGWSGGAYGVGKRIKLGYTRAMITAALQGTLEQAEFTAD PNFGVLVPDHVEGVPSEVLNPRLTWQNKEAYDINARELAQRFQKNFEQFAQTAEEIRQ AGPKA" gene 1229244..1230206 /locus_tag="Dhaf_1135" /db_xref="GeneID:7258105" CDS 1229244..1230206 /locus_tag="Dhaf_1135" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: tpd:Teth39_0095 beta-lactamase domain-containing protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002457631.1" /db_xref="GI:219667196" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7258105" /translation="MKGYKIGSFLLVLLLSILLIGCADLANPNPQNSQDQRNSVKEGQ NPGSFLGKDNADTKALQVSFIDVGQADSALIQIPNGKNILIDAGNNADAEFLIKYLQD RGIEEIHILIGTHPHEDHIGGLDKVIEKFKIGQVIMPKVTSTTRTFEDVLLAVQEKGL KIKEGKAGVQLDLGPLEEGMPAVSAEILAPLSGQYEDMNNYSIVLRLVYGPHAFLFTG DAEDVSEKEMLAAGVNLKADVLKVGHHGSKSSTTKDFLAAVAPKYAIISVGKDNSYGH PTETVLKRLSDAGIGIYRTDQVGTITVTANGSALTFATTTHEVQ" sig_peptide 1229244..1229324 /locus_tag="Dhaf_1135" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.686 at residue 27" gene 1230262..1230474 /locus_tag="Dhaf_1136" /db_xref="GeneID:7258106" CDS 1230262..1230474 /locus_tag="Dhaf_1136" /inference="similar to AA sequence:KEGG:Cthe_2753" /note="KEGG: cth:Cthe_2753 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457632.1" /db_xref="GI:219667197" /db_xref="GeneID:7258106" /translation="MKGIIDRFEGEFAVIEQEDRVIINVPRHALPREAKEGDSLVLSN GEYLIDPSETAKRKKRIEELSRELWE" gene 1230579..1231985 /locus_tag="Dhaf_1137" /db_xref="GeneID:7258107" CDS 1230579..1231985 /locus_tag="Dhaf_1137" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidoglycan-binding LysM; G5 domain protein; Peptidase M23; KEGG: mta:Moth_2422 peptidase M23B" /codon_start=1 /transl_table=11 /product="Peptidase M23" /protein_id="YP_002457633.1" /db_xref="GI:219667198" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR011098" /db_xref="InterPro:IPR016047" /db_xref="GeneID:7258107" /translation="MRPVKIKLEPKIWIESLNKLPWKSPKMIGGALAVLLALGGGGYY LNTTAPAAYVVINGETVGIVESVNNGEKLLEQVLDEEGAPVGEVAKTHDQIEYTTARI DNGYTPLTKEELKGKLSFFIEAVELKIADHPMFTLASQAEADKLLKAYEEMYVKEDEN NKLTAVTFEEEVEIQDVEALPEAITTVAEALEVLKQGNVQKEEYVVEENDSWWLIARK NDLKTVEVLAANPGATLDTIIKPGEKIAIEKVSPYLTVVFEGTKTATETIPFDVETKV DNKLASGTSKVTKAGADGEKVVTYSYVQKNDKIVTKTIVDEKVTKEAVSQVVTKGPQR VQVASASRGSGLVPALVRPYGGYVSSYYGYRGSEFHTGIDYAGSSGDPFVAAAAGTVV AAGRQGNYGNCILVDHGNGIQTRYAHASKILVKVGQSVSQGETIGLVGSTGRSTGSHL HFEIIVNGDTVNPANYVR" sig_peptide 1230579..1230716 /locus_tag="Dhaf_1137" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.753) with cleavage site probability 0.300 at residue 46" gene 1232014..1232919 /locus_tag="Dhaf_1138" /db_xref="GeneID:7258108" CDS 1232014..1232919 /locus_tag="Dhaf_1138" /inference="similar to AA sequence:KEGG:Moth_2111" /note="KEGG: mta:Moth_2111 uroporphyrinogen-III decarboxylase-like" /codon_start=1 /transl_table=11 /product="uroporphyrinogen-III decarboxylase-like protein" /protein_id="YP_002457634.1" /db_xref="GI:219667199" /db_xref="GeneID:7258108" /translation="MTKIERVLAMIDGEAVDKLPKGEFFVEDGLVAKLLQQSSFPSPP PLDLEARMKAYELLGLDALVFMADSQKPDKPWAELQQWQEESDFFLFALLDGPFQGVG HGYADFTAFLMDTVRDQEKIAELVKESMQKSLELGRKAIASGAHGILIADDIAYNRGL YISPRIMREIFFPYLKELLQSLRRTSRELAGRELPIFLHSDGDIRLILQDLKEMGFKG IHSLESVMDLAEVREAVGRDMCLMGGYGLDWFEAGGVPKVDELLRTVLPGSYIFGSSA GILDENLSPGAVLEVYRYVDGLKCI" gene complement(1233021..1233359) /locus_tag="Dhaf_1139" /pseudo /db_xref="GeneID:7258109" repeat_region 1233361..1234954 /note="ISDha2" gene 1233540..1234784 /locus_tag="Dhaf_1140" /db_xref="GeneID:7258110" CDS 1233540..1234784 /locus_tag="Dhaf_1140" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: drm:Dred_1795 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002457635.1" /db_xref="GI:219667200" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7258110" /translation="MQDKDTTHSTFMQAFQPLFSKDLWKDIHQQVPDLDRRTQKLKTN QLTLLISNAQLQEYRALRKISTSVLSDNLGQAIGLKSISHSQISRRLKTLPTKVSEML FRRTLHKVAQKQGYGKIRQQLGKLYMIDASTISLCLSRYPWAVFRKSKAGVKIHLRLS FDGIALPDEVVITPAKIADRKKLDELIVEDKDALNIFDRGYVDYELFDDYCEKGIRFV TRLKNNAIMEFTGVERPVEEDGIIEEDVDIILGTGSRKMKHTLREVTIDDTINEPFTI LTNDFELSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVTNQILLALMTYC SLMLLKLEVEYPRDLLTLQRLLITCLFESYEEFLEKLRRRRRKAAKRINHEKIYQMTE HYIITEEDTGWLNDLIYDPVIL" gene complement(1235391..1235696) /locus_tag="Dhaf_1141" /db_xref="GeneID:7258111" CDS complement(1235391..1235696) /locus_tag="Dhaf_1141" /inference="similar to AA sequence:KEGG:HM1_0385" /note="KEGG: hmo:HM1_0385 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457636.1" /db_xref="GI:219667201" /db_xref="GeneID:7258111" /translation="MFADKVLSCKDCGAEFVFSASEQEFYAEKGFTNEPGRCPSCRSA RKAQNRNGGGYSSRPQREMFPATCSSCGKETTVPFQPTGDKPVYCRDCYTPRKRSNW" gene 1236009..1236344 /locus_tag="Dhaf_1142" /db_xref="GeneID:7258112" CDS 1236009..1236344 /locus_tag="Dhaf_1142" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cbl:CLK_0150 putative DNA-binding protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457637.1" /db_xref="GI:219667202" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR001611" /db_xref="GeneID:7258112" /translation="MVDLGHYIWAQRVARKISLRKLAELARLSHTEIYRLENGERKHP SPCVLKSIALALDLSYNELMKAAGYLEDSSLNEGHPQKIDCGDLSQNEIEEVEKFIEY LRYKRAKTQ" gene 1236374..1237867 /locus_tag="Dhaf_1143" /db_xref="GeneID:7258113" CDS 1236374..1237867 /locus_tag="Dhaf_1143" /inference="protein motif:PFAM:PF07556" /note="PFAM: protein of unknown function DUF1538; KEGG: cpy:Cphy_2615 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1538" /protein_id="YP_002457638.1" /db_xref="GI:219667203" /db_xref="InterPro:IPR011435" /db_xref="GeneID:7258113" /translation="MNVLLEKLKEVLISVVPIIILVLVLNFTIIPMEPLLVFRFLLGA LLIVLGLAIFLFGVDIGISKIGTLMGGALTKSNKLWIVVAAGLVLGFFISIAEPDLHI LAGQVDMVTSGVIAKLSIVVVVSIGIAVMLTTGLVRIIYNIPLYKLLTVLYLIILGLS FFTSSEFLAISFDASGATTGALTVPFMLALALGVSSLKKDGKASEKDSFGLVAVTSAG AIIAVMIMSILSKQDEITGSLQESVQVSSSLLAPFINKLPVVAFEIFIALLPIMFMFF LFQKISFKLSSKAYRKVLKGLVYTFIGLVLFLTGVNAGFMEVGSKIGYNVAVLDSKWI IVVIGFILGLVVILAEPAVYVLTHQIEDVTSGYVKRPVVLIALSIGVAFAVSLSMIRI LIPGLQLWHFLLPGYVVSILMMYFVPKLFVGMAFDAGGVASGPMTATFILAFAQGAAE AIEGANVMVDGFGVIAMVAMTPIIALQTLGFIFKMKSVKEGLKENEA" gene 1237857..1238522 /locus_tag="Dhaf_1144" /db_xref="GeneID:7258114" CDS 1237857..1238522 /locus_tag="Dhaf_1144" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: amt:Amet_3184 nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_002457639.1" /db_xref="GI:219667204" /db_xref="InterPro:IPR002187" /db_xref="GeneID:7258114" /translation="MKLSSDGKEFELICFVVNFGVGSKVIKLAKQCGISGGTIFLGRG TVNHPILKFLDLTDIRKEIVLMLGEKSTAEYALKVINEKLALHKPNHGIAFTTTVRGF VGRHFSFRSEQESRGAEIPMYHAIYTVVDRGKAEEVIEAATKAGSRGGTIINARGSGI HETHTLFSMAIEPEKEIVMILAESQTTEAIVTAIRNELHIEQPGNGIIFVLDVTQTYG LRQ" gene 1238679..1239122 /locus_tag="Dhaf_1145" /db_xref="GeneID:7258115" CDS 1238679..1239122 /locus_tag="Dhaf_1145" /inference="protein motif:TFAM:TIGR00738" /note="TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cth:Cthe_1843 BadM/Rrf2 family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, BadM/Rrf2 family" /protein_id="YP_002457640.1" /db_xref="GI:219667205" /db_xref="InterPro:IPR000944" /db_xref="GeneID:7258115" /translation="MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQ VFSALRKAGIINSVKGAQGGYVLADKAAEIKVGTILRVLEGELSVANEELPQEGGVSI QECIQVKVWDQMTERINELVDSLTLEDLVHEYNVMSGHSGIMYYI" gene 1239337..1240626 /locus_tag="Dhaf_1146" /db_xref="GeneID:7258116" CDS 1239337..1240626 /locus_tag="Dhaf_1146" /EC_number="2.5.1.49" /inference="protein motif:TFAM:TIGR01326" /note="KEGG: cth:Cthe_1842 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase" /codon_start=1 /transl_table=11 /product="O-acetylhomoserine/O-acetylserine sulfhydrylase" /protein_id="YP_002457641.1" /db_xref="GI:219667206" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR000653" /db_xref="InterPro:IPR006235" /db_xref="GeneID:7258116" /translation="MSERQLKFDTLQVHGGQTADPTTGSRAVPIYQTSSYVFANAEHA ANLFGLKETGNIYTRIMNPTTDVFEQRIAALEGGVGALAVASGSAAVTYAILNIAGVG DEIVSASTLYGGTYNLFSTTLPKLGIKTVFVHPDDPENFRKAVTEKTKALYIETIGNP GINLIDIEAVAQIAHEYGVPLIVDNTFGTPYLIRPFEFGADIVVHSATKFIGGHGTSI GGIIVDSGKFDWAGSGRFPGLTEPDASYHGLNYAEALGPAAYITKARVQLLRDTGAAL SPFNSFLFLQGLETLSLRVERHVANTKKIVDFLSNHPQVAWVNYPSLKESKYYELAQK YLPKGAGSIFTFGIKGGIEAGKKFIDSLEIFSLLANVADAKSLVIHPASTTHAQLSEE DLVAAGVTPDMVRLSIGIEDAEDLIYDLEQALRKAAG" gene complement(1240755..1241792) /locus_tag="Dhaf_1147" /db_xref="GeneID:7258117" CDS complement(1240755..1241792) /locus_tag="Dhaf_1147" /inference="protein motif:PFAM:PF03601" /note="PFAM: conserved hypothetical protein; KEGG: gka:GK0890 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457642.1" /db_xref="GI:219667207" /db_xref="InterPro:IPR004630" /db_xref="GeneID:7258117" /translation="MAIINNPVERTERHFPSAKFPIAPFLPGLLFTMGVAAFATGIAT LPGISKIGAMLCAIFIAVLYRNTLGYPEKCRPGIQFTAQKILRFAIILYGFRLNIHLV LQQGPSLLFQGVFTIVIAVFTTLLVSKWLKGDRQLSLLLGIGTGICGAAAIAAVAPIL KAKDEDTAIGVGIIALIGTLFTLAYTLLYPYLGLTALQYGTWSGITLHEIAHAAAAAN SVGADALTASLLAKLARVFLLIPVSFVLLWWVRRQSKETEDSTQRASFPWFLLGFILT SLIGTYLPLPTEVLNAIATLSSFLMAAAMVGLGLNVHLASLRSRALRPLLAMLVASVL VSAFSYFTLIL" gene 1241924..1242835 /locus_tag="Dhaf_1148" /db_xref="GeneID:7258118" CDS 1241924..1242835 /locus_tag="Dhaf_1148" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bwe:BcerKBAB4_4969 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002457643.1" /db_xref="GI:219667208" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258118" /translation="MIIETLEIFRKVAEEKSFSKAAEDLFLSQPAVSSHIRNLENEFG TKLIYRSSKHVDLTPAGEILYEQACRIINQYQEAKEKINQIQSIVSGNLRIGASFTIG EYILPELVSQTARRYPNLNINVTIGNTEEIAQGLRQNRLDVALVEGKITGKEFILEPF MVDEMVLIALPSHPLAKIKGVTAQDLEDQVWILRETGSGTREFSDRFIETLKIPVKHS YGFSSNTGVKAAVLSGLGIALVSKLIIQKEIKAGEIAIIPLEENLPRLSREFLIARGQ QTYFTKASEAFLMELSHYSQDTHENGL" gene 1242964..1243899 /locus_tag="Dhaf_1149" /db_xref="GeneID:7258119" CDS 1242964..1243899 /locus_tag="Dhaf_1149" /inference="protein motif:TFAM:TIGR01139" /note="TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cth:Cthe_1840 cysteine synthase" /codon_start=1 /transl_table=11 /product="cysteine synthase A" /protein_id="YP_002457644.1" /db_xref="GI:219667209" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005856" /db_xref="InterPro:IPR005859" /db_xref="GeneID:7258119" /translation="MSKIARSLTDLIGNTPLLELSNYNRTTELEAKVIAKLEYFNPLS SVKDRIGYAMIKDAEEKGLLNKDTVIIEPTSGNTGIALAFVSAARGYRLILTMPETMS VERRNLLKALGAELVLTPGPAGMKGAIQKAEELAAEYKNSFIPQQFNNPANPEIHRQT TAEEIWRDTDGEVDIFVAGVGTGGTVTGVGEALKQKKPGVKVIAVEPADSPVLSGGTP GAHKIQGIGAGFVPGVYSSEVIDEIFQVKNEEAFETSRKLSKTEGLLVGISSGAAAYA ATQIAKRPENKGKNIVVLLPDTGERYLSTVLFQEG" gene 1244208..1244882 /locus_tag="Dhaf_1150" /db_xref="GeneID:7258120" CDS 1244208..1244882 /locus_tag="Dhaf_1150" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: lil:LA0574 DedA protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002457645.1" /db_xref="GI:219667210" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7258120" /translation="MELLQTVLDFFIHLDSHIGEIIASYGVWTYLILFLIIFAETGLV VTPFLPGDSLIFVVGTFAASGALDVWILFFLLLAAAVIGDTVNYEVGRFLGPKVFSKE MRFLNHENLMKTQRFYEKHGGKTIIIARFLPIIRTFAPFVAGVGTMKYLRFLAYNFVG ALLWVTVALCAGYFFGNLPFVKDNFTLVIFAIIGISAVPAVYAYIKNWLQGRNQRKVS TNNESN" gene 1244983..1245870 /locus_tag="Dhaf_1151" /db_xref="GeneID:7258121" CDS 1244983..1245870 /locus_tag="Dhaf_1151" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: nth:Nther_1064 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457646.1" /db_xref="GI:219667211" /db_xref="GeneID:7258121" /translation="MMSRAKTVQSLAVITLIFLMIAGSIGLSSGMTKEELEYRPLTLS EVTKLFAQKGLKLEAVAREGFEDTVLLGIEPEIFRIRGSEDLVWIYPFSSHREREQLA GHYWRFNDEMMAVFLPHSQLFQTLAAKNMFIVYCPLLDIESLKTMGPDYASYVQRSKA IRELVLRDLNGGKTLVFRGEGQYWMVEVVLDCFGQFYKDDQGVLGYESWSEGSSAAKY KGNPSQVESFNYSLEGNYGSISGTWHTLGPDGFARLGGGSGLVRKAEDSCSFSIQWNG RRETFNLEVDPFGMIRLPY" sig_peptide 1244983..1245075 /locus_tag="Dhaf_1151" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.470 at residue 31" gene 1246040..1246867 /locus_tag="Dhaf_1152" /db_xref="GeneID:7258122" CDS 1246040..1246867 /locus_tag="Dhaf_1152" /inference="protein motif:TFAM:TIGR01361" /note="TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: csc:Csac_2698 phospho-2-dehydro-3-deoxyheptonate aldolase" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="YP_002457647.1" /db_xref="GI:219667212" /db_xref="InterPro:IPR006218" /db_xref="InterPro:IPR006268" /db_xref="GeneID:7258122" /translation="MNLPLVGLKDERSTIRIGDTTIGAREVVLMAGPCAVESGEQMRA AAQGVKAAGGKILRGGVYKPRTSPYSFQGLGEEGIDYLREAAAEYGLLTVTEVMDERS LDVLVDKVDILQVGSRNMQNFHLLKLLGEVRNPVILKRGLAATVEEWLAAAEYILAGG NAQVILCERGIRTFEPSTRNTLDLSAVSLVKVLSHLPVIVDPSHAAGRVDIIPALAKA AVAVGADGLLIEVHPHPEEAQSDGMQSLTPEQFARLAAELRPIAQSVGRSMAHSPKA" gene complement(1246969..1247229) /locus_tag="Dhaf_1153" /db_xref="GeneID:7258123" CDS complement(1246969..1247229) /locus_tag="Dhaf_1153" /inference="similar to AA sequence:KEGG:Nther_0281" /note="KEGG: nth:Nther_0281 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457648.1" /db_xref="GI:219667213" /db_xref="GeneID:7258123" /translation="MKVMMQPLEMIAHFNDQGMPRPLKFKAYFEDSPVVIAVDKIISK SEEKLAGNPMLIFRCQSISNGLLKIYELKYELHTCKWFLYKM" gene complement(1247255..1248508) /locus_tag="Dhaf_1154" /db_xref="GeneID:7258124" CDS complement(1247255..1248508) /locus_tag="Dhaf_1154" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="PFAM: UMUC domain protein DNA-repair protein; KEGG: nth:Nther_0282 DNA-directed DNA polymerase" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_002457649.1" /db_xref="GI:219667214" /db_xref="InterPro:IPR001126" /db_xref="GeneID:7258124" /translation="MSKSIIFHIDVNSAYLSWEAVYRLQQGDPLDLRTIPSVVGGDPL TRHGIVLAKSIPAKEYAIKTGETLYSALAKCPDLIIARPNYLLFRQCSEALSLILRDY SPLIQQFSVDEYFLDFTAMDLLFGDPLATAYKIKERIRNELGFTVNIGISTNKLLAKM ASELQKPDQVHTLFPEEIAEKMWPLPVGELFMVGRATTRQLLSRNIKTIGELAHTDPR LLKGIMKSHGLLIWNYAHGIENSPVRPGGRVAVKGMGNSTTTSFDVKNRREAHLVLLS LVETVSARLRHDQYFARLISISFRTHEFLSYSHQRKLSHATDCTNELWEIACQLFDEL WKGQPLRHLGVRASELCQNDFLQFSFFTKDYERDRKVDQAVDIIRQRFGSQAIMRSSY LHSGLKSMTGGVIAEEEYPAMTSLL" gene 1248842..1250275 /locus_tag="Dhaf_1155" /db_xref="GeneID:7258125" CDS 1248842..1250275 /locus_tag="Dhaf_1155" /inference="similar to AA sequence:KEGG:Dred_0425" /note="KEGG: drm:Dred_0425 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457650.1" /db_xref="GI:219667215" /db_xref="GeneID:7258125" /translation="MKKYNVIIVGAGPAGIFASYELATQAPESAVLLIEKGRDIYKRS CPILKKTLSKCPPPNKQREFASCTPACSITNGFGGAGAYSDGKFNITTEFGGWLTEYL PPSEVLSLIHYVDQINLKHGATSSLTDPSTPTVKEIERKALGAGLKLLRAQVRHLGTE LNLEILKDIYEYLKGKIDMVFETEVADIMTAEAEGHLQVKGIRTNKGEEYYAPKVVVV PGRDGSEWFKDVLKKYNLEMSSNQVDVGVRVETLDTIMEDINENLYEGKFLYRTSVGT TVRSFCSNPSGHVVIENHTGVMLANGHAYRDKNLGSHNTNFALLVSHNFSYPFNKPTE YAKNISRLANDLSNGSVLLQTFGDIMKGRRSTEKRVKESFVEPTLKEAVPGNLGLVLP YSTMKSIIEMIEALDKVTPGIASEHTLLYGVEAKFYSSRPKLKNNFETEIAGLYAGGD GAGITRGLAQAEACGVKIARNIIEENS" sig_peptide 1248842..1248913 /locus_tag="Dhaf_1155" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.809) with cleavage site probability 0.761 at residue 24" gene complement(1250381..1251841) /locus_tag="Dhaf_1156" /db_xref="GeneID:7258126" CDS complement(1250381..1251841) /locus_tag="Dhaf_1156" /inference="protein motif:TFAM:TIGR02121" /note="TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: bcz:BCZK1128 sodium/proline symporter; osmoregulated proline transporter" /codon_start=1 /transl_table=11 /product="sodium/proline symporter" /protein_id="YP_002457651.1" /db_xref="GI:219667216" /db_xref="InterPro:IPR001734" /db_xref="InterPro:IPR011851" /db_xref="GeneID:7258126" /translation="MIAFSVIFYMVMMLAIGYYSYKRTTNLSDYMIGGRTLGPAVTAL SAGASDMSGWLMMGLPGAMFAAGISSGWIVVGLTIGAYFNWLYVAPRLRSYTEIASNS ITIPSFLGHRFRDTSHVIRLVSALVIIIFFTFYVSSGLVSGAVLFNTTFGIGYHTGLW LILLVIVGYTLIGGFLAVSFTDFVQGLIMVTALTMVPVVTLWHSGGLGSSFTTIQTID PALLNIFTGTSVIGIISLLAWGLGYFGQPHIIVRFMAISSVSEIKKSRRIGMSWMVFS EVGAMLTGLLGIAYFATHGLTLADPETVFIELGKILFHPIVTGLLISAILAAIMSTIS SQLLVTSSSLTEDIYRILFHREAKDKELVFVSRLCVLLVALLATYLAWTQNDTILNLV GYAWAGFGSAFGPVILLSLYWKRMNKWGALAGMIVGSATVILWEQFPTFAAVYEMIPG FIMGLLSIIIVSLLTTEPSQEILDEFAKSAAETKGN" gene complement(1252084..1252437) /locus_tag="Dhaf_1157" /db_xref="GeneID:7258127" CDS complement(1252084..1252437) /locus_tag="Dhaf_1157" /inference="protein motif:TFAM:TIGR01300" /note="TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: bcl:ABC0793 putative monovalent cation/H+ antiporter subunit G" /codon_start=1 /transl_table=11 /product="monovalent cation/proton antiporter, MnhG/PhaG subunit" /protein_id="YP_002457652.1" /db_xref="GI:219667217" /db_xref="InterPro:IPR005133" /db_xref="GeneID:7258127" /translation="MNGSTLIELGIGIIILMGTIFGFLSAIGFIRLPDVYNRAHALAK SSTLGVLFVLLGTFLFFLFVEDYFSIKLFLGIFFVFLTSPVSSHVICRSAYRAQVPLA KASVRDDLKEVLEKA" gene complement(1252415..1252711) /locus_tag="Dhaf_1158" /db_xref="GeneID:7258128" CDS complement(1252415..1252711) /locus_tag="Dhaf_1158" /inference="protein motif:PFAM:PF04066" /note="PFAM: multiple resistance and pH regulation protein F; KEGG: bpu:BPUM_2834 putative monovalent cation/H+ antiporter subunit F" /codon_start=1 /transl_table=11 /product="multiple resistance and pH regulation protein F" /protein_id="YP_002457653.1" /db_xref="GI:219667218" /db_xref="InterPro:IPR007208" /db_xref="GeneID:7258128" /translation="MIEGILFWVIFLSLCFSTLSILITIYRCLKGPTASDRVQALDVL GINIIASVAIFSVLLRTTAFFEVILLIGILSFIGTIAFARFIERGIVIERQHFD" gene complement(1252708..1253187) /locus_tag="Dhaf_1159" /db_xref="GeneID:7258129" CDS complement(1252708..1253187) /locus_tag="Dhaf_1159" /inference="protein motif:PFAM:PF01899" /note="PFAM: cation antiporter; KEGG: bcl:ABC0791 putative monovalent cation/H+ antiporter subunit E" /codon_start=1 /transl_table=11 /product="cation antiporter" /protein_id="YP_002457654.1" /db_xref="GI:219667219" /db_xref="InterPro:IPR002758" /db_xref="GeneID:7258129" /translation="MPMQVLINLFIGVLWMFLQDDWSILTFASGYLFGILVLFILRRF LDSKFYLFTLHAVIQLFFLFIYELFTSSILVLREIIKPQIDIKPGIISFATSLESDME VTLLALLLTLTPGSVVMEITPDKKLFYIHAMDIPELSDAVIRSKEKFEEAIKKVTRP" gene complement(1253217..1254704) /locus_tag="Dhaf_1160" /db_xref="GeneID:7258130" CDS complement(1253217..1254704) /locus_tag="Dhaf_1160" /EC_number="1.6.99.5" /inference="protein motif:PRIAM:1.6.99.5" /note="subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone" /codon_start=1 /transl_table=11 /product="putative monovalent cation/H+ antiporter subunit D" /protein_id="YP_002457655.1" /db_xref="GI:219667220" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003918" /db_xref="GeneID:7258130" /translation="MNNLVILPLVLPVMAGMIMVILRNHIRLHRFLSLLTTTLVGIVS LVLMRQIQATGIQTLQLGGWEAPFGISFVADMVAILLVLVTAIVTFCCVSYAFSSIGS QRERHYFYPLSQFLIAGVNGSFLTGDIFNLFVCFEVMLVASYVLITLGGTKLQLKESI PYILINMISSFLFLIALAFLYRLTGTLNLAHLSVRVAEIGQDGLMTAVAFLFLIVFSL KAGLFLFFWLPGSYSAPPTAIAALFAALLTKVGIYAIMRLFSLVFYHEPEVTHLLIGV LAAVTMLLGAMGAVAFGDIKSILTYNVVIGVGFILAGFASFTETGLRGSIYYLAHDMI VKALLFLLGGTILHLTGTGKLKDMSGLIRLHPQLGWMFFVAALSISGIPPLSGFLGKI FVTEGTFRAGYFWLGGIGLLTSLMVLYSMLKLFMNVFWGYTNFTEETEKGTTKGLLLP IALLTACTIALGLGAEGLHGVVDLAAAGLLDPQTYIEAVFQERYP" gene complement(1254697..1255023) /locus_tag="Dhaf_1161" /db_xref="GeneID:7258131" CDS complement(1254697..1255023) /locus_tag="Dhaf_1161" /inference="protein motif:PFAM:PF00420" /note="subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali" /codon_start=1 /transl_table=11 /product="putative monovalent cation/H+ antiporter subunit C" /protein_id="YP_002457656.1" /db_xref="GI:219667221" /db_xref="InterPro:IPR001133" /db_xref="GeneID:7258131" /translation="MAIVIGILFTIGTYLILSKTLLRIILGTSLIGHGVNLLILTMGG LKKGGPPLLGLKESLFTDPLPQALLLTAIVINFATTALFLVLSYRTYNVLGSDDSEAL RGCDDE" gene complement(1255036..1255461) /locus_tag="Dhaf_1162" /db_xref="GeneID:7258132" CDS complement(1255036..1255461) /locus_tag="Dhaf_1162" /inference="protein motif:PFAM:PF04039" /note="PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: oih:OB3108 putative monovalent cation/H+ antiporter subunit B" /codon_start=1 /transl_table=11 /product="Na+/H+ antiporter MnhB subunit-related protein" /protein_id="YP_002457657.1" /db_xref="GI:219667222" /db_xref="InterPro:IPR007182" /db_xref="GeneID:7258132" /translation="MKDPNDVILRMVTKVVVIIILTFAVNLFVSGHHHPGGGFIGGLA FVAAIVLLFLVYGIEKVRQNFPVDFKALAGVGVLISVLTGARGMFIGEPFLTQAFGYV HLPLFGKTEMATAVLFDVGVALAVIGTSLTIIMSIGDDR" gene complement(1255463..1257835) /locus_tag="Dhaf_1163" /db_xref="GeneID:7258133" CDS complement(1255463..1257835) /locus_tag="Dhaf_1163" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR00940" /note="subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit A" /protein_id="YP_002457658.1" /db_xref="GI:219667223" /db_xref="InterPro:IPR001516" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003916" /db_xref="InterPro:IPR003918" /db_xref="InterPro:IPR003945" /db_xref="InterPro:IPR005663" /db_xref="GeneID:7258133" /translation="MVWLYPILGIPFLFAFLVPVLHKRFTPQIHTGWFVVWIPLLIFG ILLSTVPTISSGGIIDLSLPWIPAYDINITLFLDGLSLIFGLLISGVGFLVILYSIYY LSKHKEALHNFYIYLLLFMGAMLGVVLSDNIFALYVFWEMTSISSFLLIAYWFEREKS RSGARKSLLITVFGGLAMLAGFILLTMMTDTYSIREMVHSLDGIHSHTLFLPVMVLIL LGAFTKSAQFPFSIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFGGGEVWFW LVTGIGLMTLFYGSFNAIRQTDLKALLAYSTISQLGLIMSLLGLGSAGLAPEAGNAQA AYALAVFTGLFHLVNHSTFKGCLFMVVGIIDHETGTRDIRKLGGLMHIMPISFTLALI GCLSMAGLPPFNGFLSKELFFTAVLNASEISVLIPVVAWLASVLTFVYSLIMVFKTFT GQPRVKSGKQAHEAPLGMLLPPMVLAALVVLLFFFPNVLVHYVLAPAWAAVLPSLARE NLLTVHVSPWHGVTPELLMTLGVIVLGGTLYKTLKKWVKLYRTYPQSLTLNHIYETAL ELMESLSLALTKRYMTGSLRDYLIYILSFIVVAVGGALVLAQGIAFDPSHDAAFSIYE LALLAGMVVCAITVLLAETRLTAIIAVGALGFLVVFFFVLFRAPDLALTQLVVETITT VLFLLCFYHLPKLKKETTPLPSKVVNGLLSLAVGLVMTLVALSANGNPLPESIAGYYE NAYELAGAKNIVNAILVDFRGFDTMLEILVLSMAGLGVYTLIKLRMAGGK" gene 1257963..1258646 /locus_tag="Dhaf_1164" /db_xref="GeneID:7258134" CDS 1257963..1258646 /locus_tag="Dhaf_1164" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA domain protein; KEGG: bcl:ABC0786 osmosensitive K+ channel histidine kinase" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_002457659.1" /db_xref="GI:219667224" /db_xref="InterPro:IPR006016" /db_xref="GeneID:7258134" /translation="MFKKKKHMDEGLLVCIYYGPNGERLIRRGSKIAKMFDCPLYILT VDAKPFDELDADKSMYITKWKKLAKEVEADGFILKDNEQRPVYKVIAETAREKRATQI IMGQTVQSRWEQITKESIVNLLLKEIPFVDLHIISVARYIKDPDCNYEKGIRAYLMKE GENFRLVFKHSKEIVYEGIFFKEFGTDFNNGIFKLIKDGETLQVQVIEDMVTELTNVD MEPNENNEN" gene complement(1258696..1259259) /locus_tag="Dhaf_1165" /db_xref="GeneID:7258135" CDS complement(1258696..1259259) /locus_tag="Dhaf_1165" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: bce:BC4741 DNA integration/recombination/invertion protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_002457660.1" /db_xref="GI:219667225" /db_xref="InterPro:IPR002104" /db_xref="GeneID:7258135" /translation="MEYVDPIKDVESINAIKKILSNHSQRDLLLFVFGINTGLRISDL LALKLSDVWEDGRIKEFLLIQDGKSGEEKAYYINNRIQEELLKYLALARLNGSDYLFK SKKDNLPITRQQAYRIINHAARQVGIPGKIGTHTLRKTFGYHAFRAGVAVSILMKAFH HHSPSETLKYIGINKEETRFIKVNVNL" gene 1259429..1261342 /locus_tag="Dhaf_1166" /db_xref="GeneID:7258136" CDS 1259429..1261342 /locus_tag="Dhaf_1166" /EC_number="1.2.99.2" /inference="protein motif:TFAM:TIGR01702" /note="KEGG: cbl:CLK_1658 carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase, catalytic subunit" /protein_id="YP_002457661.1" /db_xref="GI:219667226" /db_xref="InterPro:IPR004137" /db_xref="InterPro:IPR010047" /db_xref="InterPro:IPR013055" /db_xref="GeneID:7258136" /translation="MSETVLEKTEGRVSYHDSVEEMLVRIREDGMSNVFDRYQAQEKI RCKFCLQGLTCQQCSQGPCRINEKGEQDRGVCGIGPDAMAMRKLLLQNIMGAGTYSHH AYEAFRTLKATGEGKTPFKIKEPEKLQWMCEKLGIDTDQDMNKMAIQLADLLEHQQQI GVEEKNLMVEAFAPKKRKQVWRDLNIYPAGTVHEEQNCVASCLTNVDGNYASLALKAL RLGLATIYNSQIGLEMVQDILFGTPQPHEVDVDLGIMCPEHVNIVFNGHQPWIGAAMI ERARSSDVQEKARAAGAKGLRVVGSIETGQELLQRFEMDDVFVGLMGNWLAIEPLLAT GTVDVLAMEENCSPPAIDMYAEKYQATLVSISTIIDIPGLQHKFPYDPSETDKIVEAL IELAIDNFKKRKGKVTPKVPQYKAKAIAGFSTEAVLGALGNKLDPLVEVIAAGKIKGV VALANCSTLRNGPQDWNTVNLTKQLIKKDILVVAGGCGNHALEVAGLCNLDAIKEAGS GLQEICSALKIPPVLSFGTCTDTGRISMLVTALADHLDVDIPQLPIAVTAPEWMEQKA TIDGVFAVAYGAYTHLSPTPFITGAPQLVKLLTEDVEGLTGGKVAVGDDPVEVANAIE AHIVAKRKGLGLH" gene 1261520..1262239 /locus_tag="Dhaf_1167" /db_xref="GeneID:7258137" CDS 1261520..1262239 /locus_tag="Dhaf_1167" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cbe:Cbei_3016 putative transcriptional regulator, Crp/Fnr family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002457662.1" /db_xref="GI:219667227" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7258137" /translation="MKSCTACHSCGCHSEGQFCAAKAPIFAMLADEQLAVISGLITRR RYKKGQVLFFEGDVSDKFYIINHGKIKTFKHTREGKEQILYILSEGDFIGDLSLLKKS AFPYNAEALEDVGVCTLSKDDLDRILKENPEICLKILESVHDRLVNLENLVQTLSTKD VEARIAGLLFNFSKNFGEHKDGKVMLNIALTREEMANFIGVTRETMSRKLSGMQDEGI LELVGNKRIIINRLQDLEAMM" gene 1262467..1263165 /locus_tag="Dhaf_1168" /db_xref="GeneID:7258138" CDS 1262467..1263165 /locus_tag="Dhaf_1168" /inference="protein motif:PFAM:PF04405" /note="PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: cbk:CLL_A2036 nitric oxide-dependent regulator" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF542 ScdA domain protein" /protein_id="YP_002457663.1" /db_xref="GI:219667228" /db_xref="InterPro:IPR007500" /db_xref="InterPro:IPR012312" /db_xref="GeneID:7258138" /translation="MTQFNAGQKIGDIVTKFPKAADIFKEYRIDFCCGGERILREVLQ REGHNETEILGRINDLYAELKNIRDTEQDWSQEESGPLSDYVVNTHHAYLNAELPRIS KLITMILRVHGESHPELKGVHRLFHHLKLELEQHLIKEEAIEFPLMKEQETKPSANIQ KEIRRIIQELKAEHDGAGDILKELRTITNDFAVPADACNSYRITYQKLAELESDIFQH VHLENNILFPRYLG" gene 1263202..1263417 /locus_tag="Dhaf_1169" /db_xref="GeneID:7258139" CDS 1263202..1263417 /locus_tag="Dhaf_1169" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457664.1" /db_xref="GI:219667229" /db_xref="GeneID:7258139" /translation="MKAAPRGKHFAYKIVDRGFGKLYTGYSFRCMENFTIGEVRKEAV IMTMLLIQADVYGVNPVTSSAAWDYPI" gene 1263592..1264845 /locus_tag="Dhaf_1170" /db_xref="GeneID:7258140" CDS 1263592..1264845 /locus_tag="Dhaf_1170" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ooe:OEOE_0299 permease of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457665.1" /db_xref="GI:219667230" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258140" /translation="MSVLRTMLNPYRGMPKEIYVIFIARIINAIGAFVAPLMTIIMTQ SIGLAEGKAGFYLSLSGGISLMAALCGGKLVDRFGRKRVILLFSGSAVLVFFRIGFME PSLTMIHLIILAGALNSTTKPAYDSLIADLTTPANRSGAYALSYMGWNIGFAIGPVLG GFLYRHHLPWVFIGEGLAIFMSLVLIAAFIKETLEKAHEEIQDEERYLERRVEGSIFK VIRLRPLLICFALIVFGYNFTYSQWSFMLPMQVMKNYPVIGSQYFGFLAAFNGLIVII FTPIITRLAGHLPYLHRGIMGGILYAVGFGMIGVLNSLEWLFLWAFIFTLGEIMMAIT VVPFTVDNTPASHRGRMISTMAIIEDSGYTLGPLGMGIALSYISMETGWLALGASTLI FTLLMKGLEHREKTIAGKTAKVMAK" gene complement(1264983..1265273) /locus_tag="Dhaf_1171" /db_xref="GeneID:7258141" CDS complement(1264983..1265273) /locus_tag="Dhaf_1171" /inference="similar to AA sequence:KEGG:GK0347" /note="KEGG: gka:GK0347 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457666.1" /db_xref="GI:219667231" /db_xref="InterPro:IPR010106" /db_xref="GeneID:7258141" /translation="MSEPAIRKALTAEEIFLKQDKERYLYEMREKALLDHVSAIEGAK EEGIAEGITKGIAEGKAQANNEIALKLLEMKLPLSDIVKATGLTEEEIRKLH" gene complement(1265399..1265707) /locus_tag="Dhaf_1172" /pseudo /db_xref="GeneID:7258142" gene complement(1266241..1267131) /gene="garR" /locus_tag="Dhaf_1173" /db_xref="GeneID:7258143" CDS complement(1266241..1267131) /gene="garR" /locus_tag="Dhaf_1173" /inference="protein motif:TFAM:TIGR01505" /note="catalyzes the reduction of tartronate semialdehyde to glycerate" /codon_start=1 /transl_table=11 /product="tartronate semialdehyde reductase" /protein_id="YP_002457667.1" /db_xref="GI:219667232" /db_xref="InterPro:IPR002204" /db_xref="InterPro:IPR004455" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR006183" /db_xref="InterPro:IPR006398" /db_xref="GeneID:7258143" /translation="MKIGFIGLGIMGKPMSLNLLKAGHEVVVYNRSPKAVQECVQAGA EAGASPKDVAERCPLIITMLPNSPQVKEVILGPDGVLEGARPGAMVIDMSSIAPGASQ EVAQKLAEKNVRFMDAPVSGGEPKAIDGTLSIMAGGKSEDFEEFLPVLKAMGSSAVLC GDVGAGNVTKLANQIIVAVNIAAVSEALTLATKAGANPETVYKAIRGGLAGSTVLDAK GPMMLERRFDPGFRINLHIKDLNNVMETGHDIGSPLPITATVMEMMQTLKSYDLDHQD HSALVQYYEKLAGIEVKKAD" gene complement(1268152..1268940) /locus_tag="Dhaf_1174" /db_xref="GeneID:7258144" CDS complement(1268152..1268940) /locus_tag="Dhaf_1174" /EC_number="5.3.1.22" /inference="protein motif:TFAM:TIGR03234" /note="KEGG: bra:BRADO4945 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel" /codon_start=1 /transl_table=11 /product="hydroxypyruvate isomerase" /protein_id="YP_002457668.1" /db_xref="GI:219667233" /db_xref="InterPro:IPR012307" /db_xref="InterPro:IPR017643" /db_xref="GeneID:7258144" /translation="MHVKKDQLVANLSFLFNDLPMMERFQAVKAAGLKRVEFMFPYDL DLAQLKQELASHQLEMVLFNLPAGDWGAGERGIALDPSRQEEFKAGVEKAVALAQALH VKQINCLVGKVREDQSPAEQRATLIANIRYAAEQLQQIGVKLLLEPLNRFDAPGFYLN TTEDVLKVIAEADHENVFLQYDTYHAAREGEDLLQILREKLPHIAHIQVADNPGRHQP GTGEIDYHAFFKTLAEVGYSYAVSMEYVPQPDTVASLEWIKAFE" gene complement(1268971..1270746) /locus_tag="Dhaf_1175" /db_xref="GeneID:7258145" CDS complement(1268971..1270746) /locus_tag="Dhaf_1175" /EC_number="2.2.1.6" /inference="protein motif:PRIAM:2.2.1.6" /note="PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: hmo:HM1_1979 acetolactate synthase, large subunit, biosynthetic type" /codon_start=1 /transl_table=11 /product="Acetolactate synthase" /protein_id="YP_002457669.1" /db_xref="GI:219667234" /db_xref="InterPro:IPR000399" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="GeneID:7258145" /translation="MALWGNETNDTRLTESLAAGRVRMTGAQFLAAFLAKKGVSQIYG IPGAAILPFYDAVRELNMESYNVRHEQAAIFMADGYSRATGKVGVCAATSGPGATNFL TGLYSAYSDSVPLLALTGQVPTSLIGKDSFQEAPMVEMARPVTKAAYLVEKAGDLPRI LKEGWELATTGKKGPILLDLPLDVQKGLVEVDWSEFDFSPPQPPRQEIAQDTLNTILS MLYEAKTPTLLAGGGIVQGNAAELLRETAELLQIPVVSSLMGKDAFPNDHPLYGGLVG TMCQTPLGNKTILESDLIINLGGRFDGRGTGDSQRFQSGRKVVHVNLDNRELSRHIST ELAVAADIRDFLEHFLAFLRDKGFIPTPQARQRILDLQEERIRLARRTKFDTLPLKPQ QAIAEVREAMARDGILTLDCGISQIWATQLFEAYVPRSFLITGRAGTMGWGLGAALGA KLAYPDRQVVNLLGDASLGMSLQELATAAKHNIPVVVVVLNNSLFGLIRQQQNLLFEQ RCISTDLEYENHVQGHSRGLDFVATARGMGVEAELVDGPDQIQGALARAFSQNRPYLI EVLVDPLAQCSVSLDGTLTGVLELE" gene complement(1271271..1272665) /locus_tag="Dhaf_1176" /db_xref="GeneID:7258146" CDS complement(1271271..1272665) /locus_tag="Dhaf_1176" /inference="protein motif:PFAM:PF02133" /note="PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pcr:Pcryo_0405 permease for cytosine/purines, uracil, thiamine, allantoin" /codon_start=1 /transl_table=11 /product="permease for cytosine/purines uracil thiamine allantoin" /protein_id="YP_002457670.1" /db_xref="GI:219667235" /db_xref="InterPro:IPR001248" /db_xref="GeneID:7258146" /translation="MSLNTDNHADVHIEHAPGVEETLYPKKAKDRTMGPIPYMFMWIG DGVNLGNMTLGGSMIIAGVATLNIFQTFAAAIIAIGIISLVFTLNDRLGYRTGIPYVM QLRMSFGEKGSVISSLLRGIPAIVWYGFQSWVGGTALNEILKVFTGGAFDNIAICFVV LQLVQIVLSMYGFHAIKWVETLISVVLMVAFVYVFVLLLTNYSDVIAQKWVYTKGTWG LEFWAFIMVLMGNYAAIFLSAADYSRELKQGYGDVKRGLFYFSPIVIAYGAVIVIGAM LASATGNSNPVKALAIVFNNDFVTVFVSAFIVMGAIAVNMVANIIAPTYVIQLLTKIK YKPAVVITGLLGLCSFPWVLVQDSSSAGLATFILIYSAFLGPIVAIILVEYYILRKQK VNVVDLYRADGPFAGYNPAAITAMLIGAAAAFTLVDLAWIIGLVVGGLSYYLLTKYAF KGSKFKEGTIFENK" gene complement(1272715..1274064) /locus_tag="Dhaf_1177" /db_xref="GeneID:7258147" CDS complement(1272715..1274064) /locus_tag="Dhaf_1177" /EC_number="3.5.2.5" /inference="protein motif:TFAM:TIGR03178" /note="KEGG: sus:Acid_0362 allantoinase; TIGRFAM: allantoinase; PFAM: amidohydrolase; Amidohydrolase 3" /codon_start=1 /transl_table=11 /product="allantoinase" /protein_id="YP_002457671.1" /db_xref="GI:219667236" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="InterPro:IPR017593" /db_xref="GeneID:7258147" /translation="MSHYDLILRNGNVVCPDGVRKADIAVSDGKIVLIAEEIPGDAKE IIDAAGKHIFPGITDGHVHFNDPGRTEWETITTGSSALAAGGGVAYFDMPLNCSPCTL DAVNFNNKLAVAQKDSLVDYGFWGGLTSANLDKLDELAECGVIGFKAFACHSGIDEFP RMDDYTALVGMEKLAKLGLPLMVHCENAEITKELTELSLANNRTGVRDYFAARPPITE IENVSRMITFAEETGCKLIIAHISTAKAVELVAQARARGVDVYCETIGHYLYLTGDDV ERLGTVAKCSPPIRDGENQLQMWGRLFNDNIAFVSSDHSPCDPKLKNGEFMRVWGGIS ACQTTLQGLLTHAYHDRKFPLVKIAQLTAQHVNEIFKIKDKGQIALGYDADFALVDLD HEFTLQAEDLFYKHKVSPYVGDRFRGSVSQTILRGTTIYKDGKIVSQPIGKHLRPHQ" gene complement(1274104..1275462) /locus_tag="Dhaf_1178" /db_xref="GeneID:7258148" CDS complement(1274104..1275462) /locus_tag="Dhaf_1178" /EC_number="3.5.2.5" /inference="protein motif:TFAM:TIGR03178" /note="KEGG: rxy:Rxyl_2845 dihydroorotase, multifunctional complex type; TIGRFAM: allantoinase; PFAM: amidohydrolase" /codon_start=1 /transl_table=11 /product="allantoinase" /protein_id="YP_002457672.1" /db_xref="GI:219667237" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR017593" /db_xref="GeneID:7258148" /translation="MFNLVIKNGKVVTADKIIEASLGINNGKIAAIIEAGTEIQAEKV IDAKGNYVFPGAIDTHAHLNDPGYLWREDYAHGTAAAGVGGFTTIIDMPLQNEPAMTD GQILDKKLEVVSPNAYVDFCFWGGLVDYNLNQLKELDEKGCVAFKSFIGPVSPDYVSL TIGQAKEAMEICKEFDGRAGFHCEDYSLIKWEEARAKRKDTNDWQDFLDSRPVIAELI ATQNIIDLAKEVGAKVHICHVSHPRVAEIIRQAQNEGVDVTAETCGHYLTFTDQDVVK NGSLFKCAPPLRDAAAVERMWEYVNNGTLSAIASDHSPCELSEKSEEKHGVFGAWGGI SGIQNVMQVVFSEGVVKRGYCPTLLARSLSEGPAKAFGIFGKKGAIQVGFDADLVILD PEKEWEITPESLYYVNPISAFVGLKGKGLPVCTLVRGEVVAQDGQLVGQKGHGEYVRK IK" gene 1275926..1277155 /locus_tag="Dhaf_1179" /db_xref="GeneID:7258149" CDS 1275926..1277155 /locus_tag="Dhaf_1179" /EC_number="3.5.1.87" /inference="protein motif:TFAM:TIGR01879" /note="allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide" /codon_start=1 /transl_table=11 /product="allantoate amidohydrolase" /protein_id="YP_002457673.1" /db_xref="GI:219667238" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010158" /db_xref="InterPro:IPR011650" /db_xref="GeneID:7258149" /translation="MINSERVDRRLRELGKIGYRESGGVTRHAFTPEDRAAKDLVISY MQEAGLIVREDAVGNLIGRREGRNPKAPVVLTGSHIDTVCDGGIYDGGLGIIGAIEVL QSFNEQGISTEHPIEVYAFNDEEGSRFSFSMFGSRGVIGDLTEKDLEIKDRNGITVAE AMRNQGYDPNKIKDAVRSPEELKAFIELHIEQGKVLECNNLSVGIVTGIVNELWMKLI VKGEAGHAGATPMNLRQDALVAAAEMIQVIEGEAKKTGSTVATVGRLNVFPGGINIIP GRVEFTLDLRDTSQEVSDQVEAAIFKDLARICQERGVQLETELLQRIPPAPCSKEFQI AAKEACKKIGLQYFCLPSGAGHDAMQMVNICPIGMIFIRSKDGISHNPAEWSSSEDCA DGVNVLYHVLLDTAVQV" gene 1277176..1277637 /locus_tag="Dhaf_1180" /db_xref="GeneID:7258150" CDS 1277176..1277637 /locus_tag="Dhaf_1180" /inference="protein motif:PFAM:PF01042" /note="PFAM: Endoribonuclease L-PSP; KEGG: dau:Daud_1470 endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="Endoribonuclease L-PSP" /protein_id="YP_002457674.1" /db_xref="GI:219667239" /db_xref="InterPro:IPR006175" /db_xref="GeneID:7258150" /translation="MLEIEETLLLRYGLELPAPSEPDGYYARVIPTGNLLYVCGHTPK RQGEYVFLGKVGEDFSVEQGQEAARIAMTNCLAALKEHLGDLSLIKQFVQVIGYVRSA EHFTQQPLVMNGASELLLTCFGERGRHTRMALGTNQLPGGAAVEIMCVVEV" gene 1277912..1278673 /locus_tag="Dhaf_1181" /db_xref="GeneID:7258151" CDS 1277912..1278673 /locus_tag="Dhaf_1181" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: stm:STM0526 hypothetical protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002457675.1" /db_xref="GI:219667240" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7258151" /translation="MGYPNDLLSTRAVVQHGRYALIPPEGRVKNVLPNLEQCHVSIIA SPHYGPQFAMYTVEVLPGGGTVKPFQEEGIETFVYCLSGQGKVLVEGQEYSIDESGYV FAPASLGVELRNVGDASWKLLLYKQRYRPVEGHAARIVVGRLNDMPYAPYDGMENVRI KDLLPTDLGFDVNFHVLSFLPGGCHPFIETHVQEHGLYLLEGEGVYLIDERWIPVKKE DFIWFGPYVPQACYGVGRTPFTYIYTKDCNRDIKL" gene 1278731..1280398 /locus_tag="Dhaf_1182" /db_xref="GeneID:7258152" CDS 1278731..1280398 /locus_tag="Dhaf_1182" /inference="protein motif:PFAM:PF07905" /note="PFAM: purine catabolism PurC domain protein; KEGG: aoe:Clos_0295 transcriptional regulator, CdaR" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002457676.1" /db_xref="GI:219667241" /db_xref="InterPro:IPR012914" /db_xref="GeneID:7258152" /translation="MEITVKDLLKVGPLKTSQVVAGYQKLDNIVKGVTIIEAPDIVNW LSGGELLLTSLYSGPGEGMDYREFIHKMATKEVSALAIKVRRFVNDIPPEIIEAANEY GLPVIEVDGSVRFVDIMYPVMEQLFNSQVVKLKYYKDVQERFTTLALQCEGLAVICQT LEELVGNPVVVYDKNFKCLQSTNPQIERFEEPEEFALRENLNDKFSYYRQSVCYPDLD GRCIPQVVVPIQAFNQLKGYLTIVELNKPIVEMDFISIEQAATVTTLDMVKRFAVKEV EYKFKNDLIEHILSGELSSTNAQERINLMEWDLNRPYYVVLFDLKNLDAYHVEHRTQQ KMALQSIKSEITSTISGVIKTRTRDFIIGNKVDIIVLLWPVAANPQENSLEKIKKIAK QAQEQVKKRMKKLIVEVGIGDLAHGAEEIPRSYKEALDALSYGGMISNESAIVAFSEL GVFRILCKFAERNSLEEFIPKALLRILRYDKDNEAELLKTLEVFLECNGNASRAAKEL FIHYKTILYRLERIKEVGQLDLEDSKNRLELEMGLKMLHLMDASNLG" gene 1280524..1281051 /locus_tag="Dhaf_1183" /db_xref="GeneID:7258153" CDS 1280524..1281051 /locus_tag="Dhaf_1183" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: pca:Pcar_1624 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002457677.1" /db_xref="GI:219667242" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7258153" /translation="MDMKELLQKRRSIRKYTDTPIEKEKVEQLIRAALLSPTSRNTRA WEFILVEDQEVLAKLSLAKVGAQPLKGAALGIVVCADPQKSDVWVEDTSIATIILQLQ AQDLGLGSCWVQIRERNYQDGTPAGAYVKKLLDIPDHLQVESIIALGYPAETRQGPSE DELLREKIHWHTYKG" gene 1281051..1281383 /locus_tag="Dhaf_1184" /db_xref="GeneID:7258154" CDS 1281051..1281383 /locus_tag="Dhaf_1184" /inference="protein motif:PFAM:PF02694" /note="PFAM: protein of unknown function UPF0060; KEGG: bld:BLi00854 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457678.1" /db_xref="GI:219667243" /db_xref="InterPro:IPR003844" /db_xref="GeneID:7258154" /translation="MPMVQAAILFILAGLAEIGGGYLVWLWLREARPYWYGVIGAIIL VFYGIIPTLQKFPSFGRVYAAYGGVFIILAVLWGWGVDKKMPDTYDWIGAAICLVGVT VMLWAPRQ" gene 1281553..1282287 /locus_tag="Dhaf_1185" /db_xref="GeneID:7258155" CDS 1281553..1282287 /locus_tag="Dhaf_1185" /inference="protein motif:PFAM:PF01522" /note="PFAM: polysaccharide deacetylase; KEGG: ava:Ava_1295 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_002457679.1" /db_xref="GI:219667244" /db_xref="InterPro:IPR002509" /db_xref="GeneID:7258155" /translation="MRIIIFSRKGLRLSMMVLGLVLLGIGIRYTDLAFPAITKHPGTY YLVHTEEKVMALTFDDGPDPLYTGYILDVLKEKNVKATFFVLGESAKNNPDLLLRARQ EGHEIGNHGYSHTYTPSKFVQELIRTDEVLQEVLQERTAFYRPPGGVISNAVLAGVKE QGHILTLWSIDSRDWVNPGPAQIVQNVVNNSFPGGIILLHDGGEKREQTIRALGPIID RLREQGYRFVTVSELRNFESVKPVQK" sig_peptide 1281553..1281645 /locus_tag="Dhaf_1185" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.695) with cleavage site probability 0.551 at residue 31" gene 1282360..1283001 /locus_tag="Dhaf_1186" /db_xref="GeneID:7258156" CDS 1282360..1283001 /locus_tag="Dhaf_1186" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457680.1" /db_xref="GI:219667245" /db_xref="GeneID:7258156" /translation="MYGSIADYSSYADSYLSNYPRPSFLGHIKRTAPIPPQEEEERFE AKRAAHANVWLLVPAMTGTVAYYLFTSIFRGIRQREEEDKAVAGKIGSVVYTGIVTAG LSAYIYSVLILADGHLMDVYWPIAGAITVQLLYFAAVYTWLYRLDYSSFSAEVEDEPI EELLTFLYFSITNFATTGSSVFPESITARLLVGLQVLFLVFSFTMGLVFFTNP" gene 1283136..1284326 /locus_tag="Dhaf_1187" /db_xref="GeneID:7258157" CDS 1283136..1284326 /locus_tag="Dhaf_1187" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cbb:CLD_3434 metallo-beta-lactamase family protein/flavodoxin" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase/flavodoxin domain-containing protein" /protein_id="YP_002457681.1" /db_xref="GI:219667246" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR008254" /db_xref="GeneID:7258157" /translation="MSFKINDTITYVGKIDWELRNFHGEEYSTQRGSSYNSYLIRDEK TVLIDTVWEPFGREFIAKLKQEIDLNEIDYIVMNHNEVDHSGALPFLMEEIPNTPIYC TANGKKILQGSYHQDWNFVEVKTGDRLNIGSRELIFIEARMLHWPDTMFCYLTGDNIL FSNDGFGQHFASEHMYNDLVDTGELYAEALKYYANILTPFSKMVTAKIQEIVKMELPI SMICPSHGVIWRDNPLQIVHKYLEWAAEYQEEQVTILYDTMWNSTRKMAESLARGIRL ANPNLTVKLYNTARSDSTEVIAQVFRSKAIAVGSPTVNNGYLSSIAAILEEIKGMKFK NKKAVPFGSYGWSGEVIKLLNEELKKAGFEVVDDGVRALWTPSEENLLECVELGKRLA ASLQ" gene complement(1284427..1285071) /locus_tag="Dhaf_1188" /db_xref="GeneID:7258158" CDS complement(1284427..1285071) /locus_tag="Dhaf_1188" /inference="protein motif:TFAM:TIGR01065" /note="TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: swo:Swol_1904 membrane protein, hemolysin III-like protein" /codon_start=1 /transl_table=11 /product="channel protein, hemolysin III family" /protein_id="YP_002457682.1" /db_xref="GI:219667247" /db_xref="InterPro:IPR004254" /db_xref="InterPro:IPR005744" /db_xref="GeneID:7258158" /translation="MRIKEPMNTLTHFIPFIAAWFGLVSLILLSYGSLSKVITMTIYG ISVIALYGTSSLYHALRTTPKKELALRKIDHMMIYVLIGGSYTPVFYYGLDGVWRWVM LIAVWTLAVIGIVLKIWFINAPRYVSTAFYVTLGWIALVPIVQLVHNLPLGALIMMVA GGVMYTLGAVIYAAKILRIPRLHLGFHEIFHIFIAAGTLIHFLMILIYFVPMTS" gene complement(1285182..1286918) /locus_tag="Dhaf_1189" /db_xref="GeneID:7258159" CDS complement(1285182..1286918) /locus_tag="Dhaf_1189" /EC_number="3.6.3.16" /inference="protein motif:TFAM:TIGR00345" /note="KEGG: aoe:Clos_1110 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="arsenite-activated ATPase ArsA" /protein_id="YP_002457683.1" /db_xref="GI:219667248" /db_xref="InterPro:IPR003348" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7258159" /translation="MKLFHPDKIQLTQYLFFTGKGGVGKTSTACATAVNLADNGKKVL LVSTDPASNLQDVFNRELSNKGVPIPEVPNLMVANLDPIQAAADYRESVIAPYRGKLP EAVLKNMEEQLSGSCTVEIAAFNEFSHFITDQEMESQYDYIIFDTAPTGHTLRMLQLP SAWSNFISENTHGASCLGQLSGLESQKEIYAQAVRTLADGYKTTLVLVSRPEDTPLKE AARASQELAELGVSNQLLVINGVISSYDDSISAGLYGKQQKALQDMPGQLQGLTAYTI PLRAYNITGIDNVRALLTKDNYALSDEILSVQHLPQLKDVINDLDVSNRKVIFTMGKG GVGKTTIAAAIAMGISARGKKVHLTTTDPAAHLKFVIRETDGITMSHIDEDAELKKYQ EEVLSKARETMSEEDLAYIEEDLRSPCTQEIAVFRAFAQIVEKAEDQVVVIDTAPTGH TLLLLDSTQSYHKEIQRSQGDIPESVKKLLPRLRSAEETEVIIVTLAEATPVYEALRL EADLKRADIATKWWVINSSLYMTDTTNQLLAAKASNEIEWINKVAEHSHGKLAVIPWR AEDIKSENLLEL" gene complement(1287049..1287438) /locus_tag="Dhaf_1190" /db_xref="GeneID:7258160" CDS complement(1287049..1287438) /locus_tag="Dhaf_1190" /inference="protein motif:PFAM:PF06953" /note="PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: cbe:Cbei_2109 arsenical resistance operon trans-acting repressor ArsD" /codon_start=1 /transl_table=11 /product="Arsenical resistance operon trans-acting repressor ArsD" /protein_id="YP_002457684.1" /db_xref="GI:219667249" /db_xref="InterPro:IPR010712" /db_xref="GeneID:7258160" /translation="MKKMQLFEPAMCCPTGICGVGVDPELLRISAVLNALKNNGFEVD RFNLTSAPMEFIKNKAINDLLSSKGVDALPAALLDGKIIITGRYPSNEEFSQHLNIPV SQLSEPKKLLNTLPKNPGCGCPDGDCC" gene complement(1287471..1287788) /locus_tag="Dhaf_1191" /db_xref="GeneID:7258161" CDS complement(1287471..1287788) /locus_tag="Dhaf_1191" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: blj:BLD_1091 arsenical resistance operon repressor" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457685.1" /db_xref="GI:219667250" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258161" /translation="MENEHEYNAKVFKAFSDPNRLLILKMLQYGERCACEILDDLAIS QSTLSHHMKILCDSGIVNYRRHGKWMLYSLNQENCQSARNFLTEITSMKDLCDINEPR QIC" gene 1288017..1288949 /locus_tag="Dhaf_1192" /db_xref="GeneID:7258162" CDS 1288017..1288949 /locus_tag="Dhaf_1192" /inference="protein motif:TFAM:TIGR01098" /note="TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cau:Caur_0020 phosphonate ABC transporter, periplasmic phosphonate-binding protein" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter, periplasmic phosphonate-binding protein" /protein_id="YP_002457686.1" /db_xref="GI:219667251" /db_xref="InterPro:IPR005770" /db_xref="GeneID:7258162" /translation="MRVTKRRYSSIIFIVFATLILTGCQVNSTLPYVSLKNVDYSQAN PQPLENTGVLKVGVASVLSPRETLEEYDRFDEYLEKEIGRPVELVQRGSYQEINNLVK TQAVDVAFICSGAYVVGNKDDLDLLAVPVVNGKSTYQSYIIVNAQSQISRFEQLKGSV FGYTDPISFSGTIYPMYLVNQIQASSNNFFNRVVYTYSHDNSIKAVLDGVVNAAGVDS LVYEFALSKDPTLATKLKIINRSQEVGSPPVVVNKFIDPNLRTVLQEALLRMDSDPLG QEALKNLNYERFALPSHQDYGAIEVMIKAVPELN" sig_peptide 1288017..1288103 /locus_tag="Dhaf_1192" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.926) with cleavage site probability 0.583 at residue 29" gene 1288984..1290477 /locus_tag="Dhaf_1193" /db_xref="GeneID:7258163" CDS 1288984..1290477 /locus_tag="Dhaf_1193" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cau:Caur_0021 ATPase domain-containing protein" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457687.1" /db_xref="GI:219667252" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR011712" /db_xref="GeneID:7258163" /translation="MKVKHYLRRMWLHFNNLKIQYKILGLVIGIVVLLTSMSVWIMGN ILTTNLRDQLDMRAISIGSDVAARSTNDLLIKNTFSVYEMINETLKNNQNLVYIFVLD PDGNVLAHTFGNVFPNELLKANSVRDAERSHLTAFATEIGVVRDVAVPILDGKLGTVR VGMDELGLREAVVTMVWSFVATALFVSALGITAAVILTKVLTRPVRELVALTQKVARG NLTVQGTVRAEDEIGVLTQAFNQMINSLSETNRERENLLAKLKENEGMRIQLLEKVMI AQEEERKRISRELHDETSQALTSLMVGLKILEAETSISSVGEKAQEMRQVVSQTLDEV HHMARELRPSVLDDMGLIPALGRYIRDYQQKYGTEVDFHASGFEGQRLTASAEVAFYR IIQEALTNVAKYAQADSVSVVLDWREHWVTAIVEDDGVGFDTENVTNEPSHGLGLFGM RERAALLGGSVNIESKLGTGTTVFIKIPIQDEFMENGERGVNGEQEA" sig_peptide 1288984..1289100 /locus_tag="Dhaf_1193" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.808) with cleavage site probability 0.533 at residue 39" gene 1290461..1291114 /locus_tag="Dhaf_1194" /db_xref="GeneID:7258164" CDS 1290461..1291114 /locus_tag="Dhaf_1194" /inference="protein motif:PFAM:PF00072" /note="PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sth:STH3220 two-component response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_002457688.1" /db_xref="GI:219667253" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR013249" /db_xref="GeneID:7258164" /translation="MNKKLRIVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAID RVDDLHPDLVLLDLTMPKLNGVDCIEELLKKHADLKILVLTMHDDEEYLKAVLQVGAK GYVLKKAADVELLSAIRTVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSER ELEVLRNLALGHTNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVRYAMENGII" gene 1291271..1291864 /locus_tag="Dhaf_1195" /db_xref="GeneID:7258165" CDS 1291271..1291864 /locus_tag="Dhaf_1195" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA1012 molybdenum enzyme of unknown function, medium subunit" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457689.1" /db_xref="GI:219667254" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258165" /translation="MGKRYAMVIDLRKCVGCHACQVACKSENNVPLGVFRNWVDELET GKFPNVSRQRLPRLCNHCENPSCVKVCPVKATTQKEDGTVVIDYDLCIGCKYCIAACP YDARFINPERRTAEKCDYCYARVEAGLQPACVNTCIGGARIFGDLNDPTSEVAKFVAT NPVKVSKPETNNGPQTYYIGADEKTLRPNFEIVGGNK" gene 1291864..1292910 /locus_tag="Dhaf_1196" /db_xref="GeneID:7258166" CDS 1291864..1292910 /locus_tag="Dhaf_1196" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: wsu:WS0937 hypothetical protein" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002457690.1" /db_xref="GI:219667255" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258166" /translation="MPTVHLFQTAHEMPWGLLIAMYLFYTGISAGAVLVTSLGPIFGV KELKKTAQVGAVVGLSLLIIAPLHLIFDLEQPLRFVKLLFNFHATSPMSYGVFILLFY GISLVLYLWSLTQNNEKNIKIFGPAAFFLAVGLEVYTGLLLGNVQAHALWNTALMPVI FLFSGLASGTAMVLLVLGIHGKMTGNNLSVEKRFLAKFFKWFVLADLALMAIMVMVLL NGNDAQYAMGYYLLHEEGLTFIWLENIIGLLLPFALLSISSLARKGPVINFSAILVVL STLLMRINIVIGGQKLPLTGNSLLEYSPKSSHLLMAIVLAVLGTILIGILTKVVSSKI DQKVVSTTGKGVVS" gene 1292910..1295714 /locus_tag="Dhaf_1197" /db_xref="GeneID:7258167" CDS 1292910..1295714 /locus_tag="Dhaf_1197" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cau:Caur_0025 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457691.1" /db_xref="GI:219667256" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258167" /translation="MNLSRRKFLQGATTLGATVAIAPLAFAKSDVEIPSWSEGSPAID TLDTDPSVQFVHSVCLGCRSDCNIRGKVKDGVVIKIDGNPYSQMTLDKPLEYSTDPQE ARKEAGKLCPRGQAGVQVLYDPLRVQQPLKRVGKRGENKWQTISWEQAYEEIIEGGDL FGEGKVEGLRAVRDMDTLIDPEAPELGPKANQFVFLAGRIENARSDLSKRFVNGGLGS LNWFEHTTACEQSHHIASDHTFAGKHHLKPDFENAKLILNFGANYGEANFPMNGLSRK MVNFLTKGGKMITVDPRFSVSASHSDTWVPIIPGGDGAFALGMIQWIITNERYDKSFL EAPTKEAAAKRGESSWSDATYLVREDNGEFLHGDAAGLGGTKEDYVVLVDGALTLAAK ANAADLFGEVTVNSIRCKTVFQKLSERASEKSLAQYAELSGIPEELMIKVADEFTSYG KLAVADFYRGTAQHTNGFHICRAICILNLLVGNIDHRGGYQIGGSTTSYAGDKGLYKI ADLNPGALKPKGIRISREQINYEESTEFKKKGYPAKRPWFPLSKDVYQEAVAGIVEGY PYPCKILWLHMGTPAYSVPAIKESLIESLKDTQKIPLFISTDIVIGDTSMFADYILPD VTYMEQWCAQGAGPTILGLVSSVRQPMTHVFPNTKSLENIMIDIAKKMGFPNFGDNGF GTGMPLNKEEDWYFKLVANLATQYGKIPGATVEDQVQYILDRGGIFDSSGTYDGLFMK NKLGKLCNIYAEKVATTVDSMTGKNFDGLPLHLPVMNAKDQEIRDDGYPFIATTYKPA FQSHSRTVNAPWLMEVLPENFIEMNDEEGEKLGFKDGDVVKVSGPTSKEGVVGKLRLR PGMRPGVVSTCIGYGHWHYGSADTIIDEKTVAGDKRRSKGVNINYAMRLDDSIGNVCL QDKIGGSCSFYDSHVKIEKA" sig_peptide 1292910..1292993 /locus_tag="Dhaf_1197" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 28" gene 1295872..1296543 /locus_tag="Dhaf_1198" /db_xref="GeneID:7258168" CDS 1295872..1296543 /locus_tag="Dhaf_1198" /inference="protein motif:COG:COG3381" /note="KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="anaerobic dehydrogenase protein-like protein" /protein_id="YP_002457692.1" /db_xref="GI:219667257" /db_xref="GeneID:7258168" /translation="MTVKMHSDEEQSSDGSRAVFYNLFANMLGREINKSWLDSGFQSE LLRTLPDSEGKTALLNSLAKASAVPEGLREIQLDYEQLFIIPGPKLTFPYESCYTHRN MDGTYGRIWQEPARAMYKILKDWDIHFPEGQDLIPDHIAVELFFMAGLCQKQSIAQGS EKRILEDWQVRFFGAHIKNWVCEFLANLVKKADTGYYQGCAVLLGEFLEEEAVEISAK TAKTI" gene complement(1296614..1297096) /locus_tag="Dhaf_1199" /db_xref="GeneID:7258169" CDS complement(1296614..1297096) /locus_tag="Dhaf_1199" /inference="protein motif:TFAM:TIGR01909" /note="TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cbf:CLI_0838 hypothetical protein" /codon_start=1 /transl_table=11 /product="C_GCAxxG_C_C family protein" /protein_id="YP_002457693.1" /db_xref="GI:219667258" /db_xref="InterPro:IPR010181" /db_xref="GeneID:7258169" /translation="MQLSIKQYGGYFVDRKYKICKQAEDYYRQGDYFCSEAIVRSIRD EFDLDVPDDVIAMASGFPVGMGGSGCTCGALAGGIMALGLFFGRSEPGDPKVNHTMAL AKELHDYFTAQHKSTCCRILTKGMELGSSVHMEQCIAITGEIAEKTTELIERELPKKS" gene 1297251..1297547 /locus_tag="Dhaf_1200" /db_xref="GeneID:7258170" CDS 1297251..1297547 /locus_tag="Dhaf_1200" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: pth:PTH_0439 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457694.1" /db_xref="GI:219667259" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258170" /translation="MISKALSDPNRYRILMLLVKFERGEFEELCCNSPEEGLCNCDIV STLEVNQSRVSYHMKELVDAGLVKEETRGKWKFYSLNRETLREYIRQMSLDYNL" gene 1297624..1298436 /gene="arsM" /locus_tag="Dhaf_1201" /db_xref="GeneID:7258171" CDS 1297624..1298436 /gene="arsM" /locus_tag="Dhaf_1201" /inference="protein motif:PFAM:PF08241" /note="in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine" /codon_start=1 /transl_table=11 /product="arsenite S-adenosylmethyltransferase" /protein_id="YP_002457695.1" /db_xref="GI:219667260" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7258171" /translation="MDNIREGVRQKYAFAIANRGQGCCGSPGCCSDGLSDAVDPITGN LYDESDLQGLDPELIANSFGCGNPTALMNLNLGEVVLDLGSGSGLDVLLSAKRVGPTG KAYGLDMTDEMLAVAKENQRKSGIENAEFLKGHIEEIPLPDKSIDVIISNCVINLSGD KDGVLKEAYRVLKPQGRFAVSDIVIKRPLPEKIRDNILAWAGCIAGAMTEEEYRGKLS SAGFENIELQVTREYDLEDPSLRGMLGDLTEGEIKEFRWAIVSCFIRATKSE" gene 1298471..1298896 /locus_tag="Dhaf_1202" /db_xref="GeneID:7258172" CDS 1298471..1298896 /locus_tag="Dhaf_1202" /inference="protein motif:PFAM:PF04324" /note="PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cpy:Cphy_1798 mercuric transport protein periplasmic component" /codon_start=1 /transl_table=11 /product="BFD domain protein (2Fe-2S)-binding domain protein" /protein_id="YP_002457696.1" /db_xref="GI:219667261" /db_xref="InterPro:IPR007419" /db_xref="GeneID:7258172" /translation="MNKCPICDKEGTLVKNLTVKHLVLDEIVELVGDPDYFLCMNEEC DITYYNTESKKKFNKQQIKVPIWFKKDVNPKYACYCSKITEEEVINAVLNDGATKMSE VLKITGAMSNSQCQKNNPLGKCCHQIIQGAIDKALNRLG" gene 1299063..1300052 /locus_tag="Dhaf_1203" /db_xref="GeneID:7258173" CDS 1299063..1300052 /locus_tag="Dhaf_1203" /inference="protein motif:TFAM:TIGR01098" /note="TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter, periplasmic phosphonate-binding protein" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter, periplasmic phosphonate-binding protein" /protein_id="YP_002457697.1" /db_xref="GI:219667262" /db_xref="InterPro:IPR005770" /db_xref="GeneID:7258173" /translation="MGIDEMKFMNPQNHGQCFLRFLLLIILSFSMLTGCSSQGEEAID IDLANRSYNEARSNSPEISDAIYFGFDRRLETKEDVKMYVPLLNYLRKETGYRFEIHV TPVNSSVVEELGQGKIQMAAIGTLGYLQASETFGAIITVKGLNNEDKDMYKAAIVTRP NSQIKVISDIRGRSFAFGDLASTQGHLIPRIMLSQKGIEIISLKYYQNFASHSEVANA VMSGRFEAGGMQDTLAKSLEDAGLLKIIAVSEEYPSSGIAFAKGVDKDVIDKITQALV KFDPEGEDKAGLYHWERSEMPHGFTYANNEDYNVLRNWADKFGLLKKMDGESK" gene 1300049..1302388 /locus_tag="Dhaf_1204" /db_xref="GeneID:7258174" CDS 1300049..1302388 /locus_tag="Dhaf_1204" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: sth:STH2139 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; SMART: PAS domain containing protein" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_002457698.1" /db_xref="GI:219667263" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR011712" /db_xref="InterPro:IPR013655" /db_xref="GeneID:7258174" /translation="MKLSTKMIIITVILIVVMGLLTMGAISTIVEQAMTQQLEEQGLT YSRMAADNVANPLLDGNVLIVQRTIENLLQTGSGISYVYVIDNYGNVIAHTFSGGFPS NLTNINILGSNQMKNTILLNMQSQGLIRDVGVRILEGLNAEIHIGFSQNSILQWVYNV RKLMLNLTLYGVLLGAVAALILSTLITRPLKRLASYALRLGKGDLEEDIVIRGKDEIV ELALCLNRMRKDLFTGMQMLRQSEESNRTLLEAISAAGEGIAVFQDNLNKKGTMKFVN EQYENLTGYTKAELLEMEANEIIDSESGKQIEEVWERSKHGLNLPKQIEILFNRKDGT KLYMEASYCNITYEGNPAIISITRDITEKKKTSMEIIRKNRELAALNELSKAISGHMN LKDKLYEALNTILQVVGKQAGWIFLYNERDNDNKAELMCQIGILPEEALTQTKQFQSC SNFPKPNSNSIQVHSSLSTACSIKQLYLPDGTKALSHVYVPLSYKDRVLGVLNIIASN LESFTKEDLNLLNSIGLQLGVAIENAELWVELNKKEMLRKQLLNKVITAQEEERKRIS RELHDESSQSIAALGVGLKSVIEIMEFDKEYALTVLEDLKNNTSSILKELHQIIYDLR PSLLDDLGLLPAIRWYVESRLSNTGIKPHVAFTGDPLRLTDETEITIFRIVQESITNA VKYSNAKNLYLGLEFGQDSLFVYIEDDGDGFNIEKALAQKDGKESFGLLGMTERAELI GGEIEIKSRSNNGTRIELKLDYQNFEEDRYEENQGLSGR" sig_peptide 1300049..1300150 /locus_tag="Dhaf_1204" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.339 at residue 34" gene 1302357..1302995 /locus_tag="Dhaf_1205" /db_xref="GeneID:7258175" CDS 1302357..1302995 /locus_tag="Dhaf_1205" /inference="protein motif:PFAM:PF00072" /note="PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH921 two-component response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_002457699.1" /db_xref="GI:219667264" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR007050" /db_xref="InterPro:IPR013249" /db_xref="GeneID:7258175" /translation="MKKIKVFLVDDHTIFRQGIRLLLKLQSDLEVIGEADNGAQAVLM VQQLNPDVVLMDIAMKGMDGLTATKDILAASPKTKVILLTQHENKEYILPALKIGAAG YVLKRAAADEVVNAIRTTYQGRSFLDPEISDIVVNAYRHGSEDEYETLTEREREILIL LAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGLIHT" gene 1303190..1303771 /locus_tag="Dhaf_1206" /db_xref="GeneID:7258176" CDS 1303190..1303771 /locus_tag="Dhaf_1206" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457700.1" /db_xref="GI:219667265" /db_xref="InterPro:IPR000813" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258176" /translation="MPQDNKQKKYGMVIDLRKCVGCMSCSVSCKMENGVAFGVFRSWV NMTEKGDFPTVKRYYQPRLCNHCENAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYC VASCPYNARYMSKTQKVADKCTFCDHRVDNGGEPACVKNCMGKARIFGDLNDPSSEVS QLISRNAVQVIKPEKGTKPQVFYISADFNQQPK" gene 1303786..1304703 /locus_tag="Dhaf_1207" /db_xref="GeneID:7258177" CDS 1303786..1304703 /locus_tag="Dhaf_1207" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: eba:ebA6432 molybdenum enzyme related to thiosulfate reductase and polysulfide reductase, small membrane subunit" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002457701.1" /db_xref="GI:219667266" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258177" /translation="MTVNDMYTFMNESNWNALVPFYFFLISISAGSVMIASLSTVFGM KQYDVIVRPAAFTSLATLILAPVFLILDLQQPMRFLYVINPLNFNIQSPMSWGGWLLI LYGITLLLFAKRFITGSVSVQAVAETAATANGNKSLSSIVFVLALLLSAYPGFELGMI SAKALWNTQLLPIYFITTSLLAGLGILLLVTQFTAKKELNDKFISSVTRITISLIVIS LVWIASRSLILTTSGLESQLAAQTLWKSAWFLGGELALGLLAPLALLLFGNVSKNRTV LTIVSVLLLIGAFSMRYSLVFAGLAAVMS" gene 1304750..1307593 /locus_tag="Dhaf_1208" /db_xref="GeneID:7258178" CDS 1304750..1307593 /locus_tag="Dhaf_1208" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: wsu:WS0709 thiosulfate reductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457702.1" /db_xref="GI:219667267" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258178" /translation="MSSKNNSFSLSRRNFLKISAAVSATAGLGLGANMLNIKEVSAEE SEKLAKSLGNVEVKYTADVMCPSECAMEMWVKDGRIVKIYGNDSCPFNDGACCAKGAS GMQLVYSPDRNKYPMIREGERGEGKFRRATWEEAIDYIGKKLVDIKKNYGAESVIMDC GDVTDRDQYYRLFHAYGTPNCVEHGSICDTPRRHGPKLMLGGKRIEPDVMRPVLVRQP DGSLKKDYTYYSKLIIYVGWNPFVATRINYESRGTVGAKVENGCKVIVVDPAHTNTAS QADLWMPIRPGTDGDLFAAMLRYILENDNQNNPLTKYIDWSFKELSVGWDEFEKEFKT WWGKNDPINGKSYFSLDWAADRTGLPKEQIAQVAHEFGITKPAALVWGMQSPGHHFNG YPASILGTALNIITGNIDVPGGAIDTELVKSDKGGDAKGSNFKKKKVKRVIGDQEVES EVESLHMDWYGDWPAAWDDVVGDYPRRFREGVTLNYGPFKGHKYPIKGFMIRTGNPVM TGGNTRDWIDALTAKDSNGNYKVELVVNIDTLYLETGMYADVILPEASYAERMSLSDV YPSHQVLWLRDRVINPLHEAKCPTDIMNMLAKKFNELGDSDFKASDFWDKYKSEEDFV NEMLAPAPGRNHAGEPVPYPHLPLGYKLIGTPDSLDAGRVTIDHEKKTVKGEPVTVDW MRNNKGVAVWPMSWNRFKIYDKEAGKHVASKAVAKTNSKLFEFTFSGYDKYNKLISET GIIPRGLKEIGYDKYPNTFYWFETKWNPYTNTEYAKYKDEYPFQLICGRVHHAMTGTQ MVPWLSETPVEGIWMPLNNSFKHKIIDMNAKGELEEVEKEFMEGTLCVGTIAINASDA KALGLKTGDLAILENPLGAQEKGKVFVTEGMRPGTIKLGFGTGGRFSPGIGPTSKSKD YTPNHSGLVDPNAHSPIMGMPCYADMIIKVEKA" sig_peptide 1304750..1304848 /locus_tag="Dhaf_1208" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.535 at residue 33" gene 1307666..1308355 /locus_tag="Dhaf_1209" /db_xref="GeneID:7258179" CDS 1307666..1308355 /locus_tag="Dhaf_1209" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002457703.1" /db_xref="GI:219667268" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7258179" /translation="MEIQELKQIFITQQELYRFLSNVITLGPKKELLDRFQGVYSELI HEEADDDNLVKGLITIQMSLRGKDLASYEAVLTREYTRLFIGPGKPPVSPYASIYISD EPKPRLMDESTIEVRKQYLDANIVMANMNSVPDDFLGAELEYINYLTIKSLEAIKNSE SEELGLFLLKQEDFISNHLATWIPKFSERIFEFTSEDFFKGMALLLNGLINSHLAILE DFKYSLKVFMD" gene 1308555..1308989 /locus_tag="Dhaf_1210" /db_xref="GeneID:7258180" CDS 1308555..1308989 /locus_tag="Dhaf_1210" /EC_number="3.1.3.48" /inference="protein motif:TFAM:TIGR02691" /note="KEGG: bld:BLi02122 arsenate reductase; TIGRFAM: arsenate reductase (thioredoxin); PFAM: Protein-tyrosine phosphatase, low molecular weight" /codon_start=1 /transl_table=11 /product="arsenate reductase (thioredoxin)" /protein_id="YP_002457704.1" /db_xref="GI:219667269" /db_xref="InterPro:IPR014064" /db_xref="InterPro:IPR017867" /db_xref="GeneID:7258180" /translation="MSNKIVYFICTGNSCRSQMAEGFGKKYLGDQYKVYSAGVEAHGL NPKAVEVMAEVGVDISEQTSDILDPAILSQADHVITLCGDAKDRCPIAPPHVKRDHWG FDDPAQAEGSEEERMITFRRVRDEIEERIKKFALERKVKKII" gene 1309019..1309372 /locus_tag="Dhaf_1211" /db_xref="GeneID:7258181" CDS 1309019..1309372 /locus_tag="Dhaf_1211" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: gtn:GTNG_1598 transcriptional regulator ArsR" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457705.1" /db_xref="GI:219667270" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258181" /translation="MNETEILESLVEEFKALGDKTRLRIISLIHNQELCVCDLTEVLE ISQPGVSQHMRRLRQGGLVKERRGGQWTYYSLNEDNPFIEVILPLIPVIQEDEKRLQE FREGKEKARRMLNEC" gene 1309362..1310432 /locus_tag="Dhaf_1212" /db_xref="GeneID:7258182" CDS 1309362..1310432 /locus_tag="Dhaf_1212" /inference="protein motif:TFAM:TIGR00832" /note="TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mta:Moth_2208 arsenical-resistance protein" /codon_start=1 /transl_table=11 /product="arsenical-resistance protein" /protein_id="YP_002457706.1" /db_xref="GI:219667271" /db_xref="InterPro:IPR002657" /db_xref="InterPro:IPR004706" /db_xref="GeneID:7258182" /translation="MSVDLPTSRRLSVLDRYLTLWIFLAMGIGVGIGYLFPGVSDWLN SLSIGSTSIPIAIGLIVMMYPPLAKVKYEEMGLVIKNKKVMSLSIVQNWIIGPLLMFV LAVVFLHDYPEYMAGLILIGLARCIAMVILWNSLAKGDSEYAAAIVALNSIFQVIFYS VFAYFFITLLPQWLGIAQGLEIHISMGEVGKSVLIYLGIPFLAGMLTRMFLLPRKGKE WYEKTFVPTISPLALLALLFTIVIMFSLKGQYIVTLPMDVVRISIPLVIYFLVMFFVS FFMSYRMGIPYEQAVTLSFTAASNNFELAIAVAVAVFGINSGQAFAAVIGPLIEVPIM IALVNVALKMGAKYFKVEQKAL" gene 1310667..1311491 /locus_tag="Dhaf_1213" /db_xref="GeneID:7258183" CDS 1310667..1311491 /locus_tag="Dhaf_1213" /inference="similar to AA sequence:KEGG:Bsph_3778" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457707.1" /db_xref="GI:219667272" /db_xref="GeneID:7258183" /translation="MEEVSTERTPLLIAAEINTIKRQVSKVLLHNAIEIGCRLAEAKG KVPYGEWGRWLEESVSYSQRTATNLIRLFEEYGTPKPTLPDWKALAKVSYTQGLILLG VPEEERAQFIAELDLESMSTRELQKAVQERNRAAAERNRALQERAELQQVLTDQEGQI TRLSGEQVNLLSKVKELNQAKAKSEARAEQLSLDLQSLKQDTSAQAIGRMSNRLDEAY HKAKANKVAFLYESLDRTFRELTWELKEFAKQEPESYKVYKDKLVDFLTKSLKANM" gene 1311603..1312218 /locus_tag="Dhaf_1214" /pseudo /db_xref="GeneID:7258184" gene 1312420..1312959 /locus_tag="Dhaf_1215" /db_xref="GeneID:7258185" CDS 1312420..1312959 /locus_tag="Dhaf_1215" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457708.1" /db_xref="GI:219667273" /db_xref="GeneID:7258185" /translation="MDRSELARAQSRKDVYFFLYTCLSRDPSFQFILSLLGEHFDRCF VGIKEVCPSCIEFEKALQTWKVNTKVRKRVREDYTNLSHRKEGFKELCGLLKQMEELV NKEIIIRQADRREQVDGILLAQIKLLEEHSSKYNSQRIHDITCKSFTEFYRSLFYTVS EFLAIDFKELKKMLDYCIA" gene 1313166..1313486 /locus_tag="Dhaf_1216" /db_xref="GeneID:7258186" CDS 1313166..1313486 /locus_tag="Dhaf_1216" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: drm:Dred_0561 regulatory protein, ArsR" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457709.1" /db_xref="GI:219667274" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258186" /translation="MNNNMGNQLISNVFKALSHPTRIQIIKLLRNGELCVCDILPNLD AEQSNTSQHLAVLKNQGIVESRKEGSKVIYSIKHNEVYEMIDFAETIILRQIEDTKTS LLNK" gene 1313541..1314080 /locus_tag="Dhaf_1217" /db_xref="GeneID:7258187" CDS 1313541..1314080 /locus_tag="Dhaf_1217" /inference="protein motif:PFAM:PF00085" /note="PFAM: Thioredoxin domain; KEGG: ccv:CCV52592_1651 hypothetical protein" /codon_start=1 /transl_table=11 /product="Thioredoxin domain protein" /protein_id="YP_002457710.1" /db_xref="GI:219667275" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7258187" /translation="MGENENRKSNRIVLKIVIPLLLLSIVAGIWAMKNSDSGLASESN INPDFALHVTQELELEKLKSYGVPVVIDFGADSCIPCKEMAPVLKELNEELQGRAIVK FVDVWKYEEFAKGYPINLIPTQIFIDAEGQPYKPKDPEATQMTLYSLRETGEHVFTTH EGGLTKNQLLEILKEMGLE" gene 1314080..1314781 /locus_tag="Dhaf_1218" /db_xref="GeneID:7258188" CDS 1314080..1314781 /locus_tag="Dhaf_1218" /inference="protein motif:PFAM:PF02683" /note="PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cbl:CLK_1201 putative cytochrome c-type biogenesis protein" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein transmembrane region" /protein_id="YP_002457711.1" /db_xref="GI:219667276" /db_xref="InterPro:IPR003834" /db_xref="GeneID:7258188" /translation="MGITTNLWLESIASAISVNTWLAPFLALVAGILTSITPCALSSV PLVIGYVGGAGQRDARKAFWLSAVFALGMSLTFTVLGTVASLLGRLLHGTGSWWYIFL GVLMLLMALQIWGIYDFVPSSYAISKNTKRGFGGAFLAGILGGFFSSPCATPVLVVLL AVVAQEGSLMWGILLLLLYSLGHSFLILIAGTSVGFVHTLSSSEKYGKLSNLLKILMG LIIMCISFYMFYIGF" gene 1314900..1316054 /locus_tag="Dhaf_1219" /db_xref="GeneID:7258189" CDS 1314900..1316054 /locus_tag="Dhaf_1219" /inference="protein motif:TFAM:TIGR01977" /note="TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: drm:Dred_0266 cysteine desulfurase family protein" /codon_start=1 /transl_table=11 /product="cysteine desulfurase family protein" /protein_id="YP_002457712.1" /db_xref="GI:219667277" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR010969" /db_xref="GeneID:7258189" /translation="MIYLDNAATTWPKPPEVVQAMADFMINMGGNSGRGTHSASIQAA NVVFDTRVELAELFGLKNPSRIAFTSNATHAINQALVGLLYPGDHVITSSLEHNAVVR PLKALERYGVSVTEVSGEPGNEFSLEHYRQSFQKNTKCVITLHASNVTGTLLPIEEIG KIAGEHGVKYIVDAAQTAGVFDIDLETLPIDILTFPGHKGLLGPQGTGGLALREGVNL KPLIYGGTGSLSESENQPDFLPDALESGTLNGVGIAGLGASVQYLRSLGLHVIRKREL ELCQQLIDGLSEIPEVKIYGENNALNRAPIVSFNIGSLDSMFVADRLDQVYGIRSRAG MHCAPHAHRMFKTISQGVIRFSPSHFTQSEEIAEAIQAVRNLAKEFERTV" gene 1316090..1316350 /locus_tag="Dhaf_1220" /db_xref="GeneID:7258190" CDS 1316090..1316350 /locus_tag="Dhaf_1220" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tte:TTE1677 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457713.1" /db_xref="GI:219667278" /db_xref="GeneID:7258190" /translation="MLYGSLIEYRALVTFPSLTQSLGAERVLKRLDCPYASIPTPRSV RSGCNTAICFPIERREIIEDLIDSGVVFLGAYEATDEGFTNL" gene complement(1316448..1316678) /locus_tag="Dhaf_1221" /db_xref="GeneID:7258191" CDS complement(1316448..1316678) /locus_tag="Dhaf_1221" /inference="protein motif:TFAM:TIGR00412" /note="TIGRFAM: redox-active disulfide protein 2; KEGG: ckl:CKL_1713 predicted redox-active disulfide protein" /codon_start=1 /transl_table=11 /product="redox-active disulfide protein 2" /protein_id="YP_002457714.1" /db_xref="GI:219667279" /db_xref="InterPro:IPR005243" /db_xref="GeneID:7258191" /translation="MVIKILGTGCANCKKLEANAKEAIKELGLDAVVEKVEDLQAIMA YGVMKTPALVVNEQVKVMGKVLSAEEIKKYLN" gene complement(1316712..1316825) /locus_tag="Dhaf_1222" /db_xref="GeneID:7258192" CDS complement(1316712..1316825) /locus_tag="Dhaf_1222" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: dth:DICTH_0271 DNA-directed RNA polymerase subunit D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457715.1" /db_xref="GI:219667280" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7258192" /translation="MSKNWYPVIDYETCTECGACVAKVPTGFTNQTPINQR" gene complement(1316848..1317852) /locus_tag="Dhaf_1223" /db_xref="GeneID:7258193" CDS complement(1316848..1317852) /locus_tag="Dhaf_1223" /inference="protein motif:PFAM:PF03773" /note="PFAM: permease; KEGG: aoe:Clos_1123 permease" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_002457716.1" /db_xref="GI:219667281" /db_xref="InterPro:IPR005524" /db_xref="GeneID:7258193" /translation="MFIFDWLNNQLLKMQWLSDLTESLVENVFGLSISDRLGGSIHFF IYDVLKIFILLSVLIFIISYIQSYFPPERTKKILGRFNGISGNILGALLGTVTPFCSC SSIPLFIGFTSAGLPLGVTFSFLISSPLVDLASVILLASIFNWKIAIAYVVVGLVLAV VGGTIIGKSKLEKYIEPFVLNNKMAEVEQEELTFKDRIDFSKNQVLDIIRRVWLYILI GVGIGAAIHNWIPQSIISAALGQDKWYSVLLATFVGMPMYADIFGTLPIAEALVLKGV GLGTALSFMMAVTALSLPSLIMLKRVVKMKLLVIFVSVVTIGILIIGYTFNIYGYLLL" gene complement(1317893..1318249) /locus_tag="Dhaf_1224" /db_xref="GeneID:7258194" CDS complement(1317893..1318249) /locus_tag="Dhaf_1224" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: ckl:CKL_1711 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457717.1" /db_xref="GI:219667282" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258194" /translation="MTSSLTNIFKILSDETRLRVLILLYQEELCVCELSGVLDLPQPK ISKSLSKLRDTNLVSDMRKEKFVFYSLKKENQTLINILRSILRDLESYPQLITDQNRL EDKEIYLNACCNLKED" gene complement(1318518..1319372) /locus_tag="Dhaf_1225" /db_xref="GeneID:7258195" CDS complement(1318518..1319372) /locus_tag="Dhaf_1225" /inference="protein motif:SMART:SM00450" /note="SMART: Rhodanese domain protein; KEGG: mma:MM_0350 putative molybdopterin biosynthesis protein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_002457718.1" /db_xref="GI:219667283" /db_xref="InterPro:IPR001763" /db_xref="GeneID:7258195" /translation="MRSKAVLYLVYLILVTSLLAGCNSESTTQPSLSPAPSQSTISNT PTQDLFQTNLLEFDAWKAKMSGEINKDYYVIDLRTPAEIKLEKAIEGSINIDANETLA KGDMTIINEKLTAIPKDALILLHCKSGGRVKAHLAKFVEAGYTNVYGLNGWTAFDSKG YIGAAKINANTEHLKPNAWQAKMIGEIGKDYYIIDTRNKVDHETGNIKGAMNLGAAET FTVDHVATMAIVEQAIPNKDSVILVHCNAGTKARVTQAHLKAEGYMNVFVLDNRMIID KAGNYTFE" sig_peptide complement(1318518..1318598) /locus_tag="Dhaf_1225" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.823) with cleavage site probability 0.224 at residue 27" gene complement(1319654..1320241) /locus_tag="Dhaf_1226" /db_xref="GeneID:7258196" CDS complement(1319654..1320241) /locus_tag="Dhaf_1226" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: amt:Amet_0992 cytoplasmic chaperone TorD family protein" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002457719.1" /db_xref="GI:219667284" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7258196" /translation="MTALLDTQELTQTANIYKLISLLYGSPTDAMEDVLSFLKETLTD IRPDLIPIVSEMEKFFVGNTNLEDLKLEHAKLFVGPFDLLAPPYGSIYLDGQRRLMGD STVEVLQAYREAGLTLSNDFKQPPDHIITELEFLYYLIAKHLETKDNKWLTMKDAFNN KYLRPWIMDFANRIENNSKNKFYKGLAKLTQELVS" gene complement(1320330..1321016) /locus_tag="Dhaf_1227" /db_xref="GeneID:7258197" CDS complement(1320330..1321016) /locus_tag="Dhaf_1227" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aoe:Clos_1097 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457720.1" /db_xref="GI:219667285" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258197" /translation="MARYGMVINLQKCVGCGACGIACKNENNVDQGMFWAHHIKQTTG VFPNVTYEYVPTLCNHCDNAACVRACPTKAMYKDDKGLTLHDPNKCIGCKSCMQACPY EVINYNSKEPHGYWRDKISVIEQGTTNGAEVAEKVEEKVPYYNPDRATTYAGIRPKGI VEKCTLCDHRLAKGEIPYCAASCPADARTVGDFDDPTSEVSQLIGKYGYKQLKPNAGT QPRVFYIRNF" gene complement(1321043..1323574) /locus_tag="Dhaf_1228" /db_xref="GeneID:7258198" CDS complement(1321043..1323574) /locus_tag="Dhaf_1228" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: wsu:WS0764 molybdopterin oxidoreductase, molybdopterin binding subunit" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457721.1" /db_xref="GI:219667286" /db_xref="InterPro:IPR000911" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258198" /translation="MKITRRRFLQASAATGLLVAGSTGFPALQALAQGENTAPSAEGK WMSTLCQGCTTWCAIQAYVVDGRVIKVRGNPNSKASHGKICPRPHLAIQQLYDPDRVK VPMKRTNPVKGRNEDPKFVPITWEEAIDTIADKMMELRKNNEPEKYIFFRGRYSGTTD ILYDATTKVFGSPNNISHSSICAEAEKFGPYYTEAYWDYRDYDLAETRYILNWGADPV ASNRQVPHVMNIWGNVADQATIVTIDPRLSASAAKSQEWMPVIPGEDGALAVAIAHVI LTDGLWNKDFVGDFNDGVNLFKKGAIVPEESFTEKYTSGIVKWWNLELKDRTPEWAAE RAGIPADQIIRVARGFAKAAPRSISWLSPGSSMQVRGAYTTMAAHALNGLVGSVENIG GTLRGSSVPTGKLPSYEAYQDDVSKKGTKAKKIDQRGNKEFPALKDGKSGGGVLTNRV ADAMLEKNPYEIKMAIADWCNLPFSCTGAQRWEKALEQLPFLAHITTNPSEMTQYADI VLPAPMHVFEKWSFNKSKANKYGFASIQQPVVEPLWDVVNDETGVSWLLAESLAKKGF PNLLDYFKNEVKDPETGKTPSSHEEFTMACLKMLTHTLWDPSAVKKGDVLNGWQDFVD KGVWNTVEPAYFKNWDKFGTKTTKFEFYSETLKAALEGHAEKHKTTVDDIMQATKYLA KGEQAFVPHYEEPFRHGDAAEYPFIFFEHRSRLNREGRSANTLWYQEFKDVDPGDEAW DDVAKINPVDGASLGIQSGDTIRITSPQGSITCTAKLWEGVRPGTVGKCYGQGHWAYG KIASLEYGKTPRGGNNNEILPSDFERLSGSTARHGGVTRIKIEKV" sig_peptide complement(1321043..1321141) /locus_tag="Dhaf_1228" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.978 at residue 33" gene complement(1323699..1324613) /locus_tag="Dhaf_1229" /db_xref="GeneID:7258199" CDS complement(1323699..1324613) /locus_tag="Dhaf_1229" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: wsu:WS0763 hypothetical protein" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002457722.1" /db_xref="GI:219667287" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258199" /translation="MEWHAPWDIRVTLDLFLGGLGVGLFLLSVLLTVYDKNRYHKLAA MGAYLAPVLVGGGVLFLLSELGRPTRFISTLYNFNPQSITSWGSIVQMIFVILSLIYA WLYFKNNTSGSLFKGVLGLGAIFALLVGGYHGLLLSSLGRPLWVGGMVTALFLVSSLL GGTALMILIKELGISIGVPKNVSGEVASVSDVKGFNFSFLVCILSALQLVLVISWQVS MTRSGLEPAATYSNLMEQYGGLWIGLVLICGLILPLLGSLYSLIKDKTAEMSKGMGLA LSVLIIAGGFTFKHLVLLAGQIKLPFLF" gene complement(1324871..1325518) /locus_tag="Dhaf_1230" /db_xref="GeneID:7258200" CDS complement(1324871..1325518) /locus_tag="Dhaf_1230" /inference="protein motif:PFAM:PF00072" /note="PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: nth:Nther_0648 two component transcriptional regulator, LuxR family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_002457723.1" /db_xref="GI:219667288" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR013249" /db_xref="GeneID:7258200" /translation="MTRQIRLLLVDDHSVLRSGLKMILNSQKDMVVIGEADSGAAAIA KIKEINPDIILLDISMPDMSGLQALEKLSKVSSAKILMLTMHADEKYLQEALKSGASG YVLKQAADTELLQAIRDVAGGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEV LRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYIST" gene complement(1325523..1326971) /locus_tag="Dhaf_1231" /db_xref="GeneID:7258201" CDS complement(1325523..1326971) /locus_tag="Dhaf_1231" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cau:Caur_0021 ATPase domain-containing protein" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457724.1" /db_xref="GI:219667289" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR011712" /db_xref="GeneID:7258201" /translation="MTIIKKLFYWPQSAPIKMKIMGIVILFVSLLGLIVIMETRSHMQ QILREQLKERGRAIASDVAARSTNPMLIGDSFSLYEILQGLPSHYEDIRYLMIFDKNG ELVTHTFGEGVPSGLLNLRSIPADLSHDNTLSFNSNEGEIIDVLVPIADGKVGWLRLG MSEISIYSSIDQLSQLLLITTVIISLLGIFGAILISHLVTKPIRDLAAASQGISLGDY SLRVSIYGTDEIADLGHNFNAMALSIQNYAQEREALVEELQAKETVRQELLKKVISAQ EDERKRISRELHDEASQSLTSLILGLKYLSELEEHEKSPAMASELKELASSTLKEVHR IAVELRPTVLDDMGLVPAIERFVKFFKRQYRLDVDFHAQNRIASRLPNEIEITLYRIV QEALTNVAKYAEARNASIVLEIKPDYVNLIIEDDGKGFDVDQVLKSSASDSHLGIAGM QERTSLLGGEFTIESSPDQGTAVYVRIPMERR" gene complement(1326971..1327936) /locus_tag="Dhaf_1232" /db_xref="GeneID:7258202" CDS complement(1326971..1327936) /locus_tag="Dhaf_1232" /inference="protein motif:TFAM:TIGR01098" /note="TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cau:Caur_0020 phosphonate ABC transporter, periplasmic phosphonate-binding protein" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter, periplasmic phosphonate-binding protein" /protein_id="YP_002457725.1" /db_xref="GI:219667290" /db_xref="InterPro:IPR005770" /db_xref="GeneID:7258202" /translation="MSDKLFTRREAIWIGTLGLLQLGILTSASVGWWDFKPIRNQSEI NLSILNAPPQKQEHDSNELLRIAVASVITPMENVDLYGDLLNLLGERVDMQAQMVQRE NYSDTNHLIENGDVQVAFICSGALLGRDKAEQAERILVAPEIAGSSKYRSYIIVPAHS PAHFFRDLKGKTFAYTDPLSFSGRIAPQYMLKKAGYNPSSFFSKTIFTYSHDNSIKAV AEGLVHGAAVDSLIYDLTLSRRPELMDKIKVIDQSEEVGNPPVVVSSQIDPELRARIK NVFLTLHLDDEGRKALRLLQFDRFVHADLDLYDRVWEMSQEVGVG" gene 1328182..1328640 /locus_tag="Dhaf_1233" /db_xref="GeneID:7258203" CDS 1328182..1328640 /locus_tag="Dhaf_1233" /inference="protein motif:PFAM:PF04024" /note="PFAM: PspC domain protein; KEGG: tte:TTE0864 putative stress-responsive transcriptional regulator" /codon_start=1 /transl_table=11 /product="phage shock protein C, PspC" /protein_id="YP_002457726.1" /db_xref="GI:219667291" /db_xref="InterPro:IPR007168" /db_xref="GeneID:7258203" /translation="MTDKLYRSETDKKVGGVCGGLADYFDIDSTLIRLVVLLTFFMGG VGFFLYIIAWAVIPVNPGYRAGGGYHHGGTVVDEMKESVQDIGSSAQSFAQDLRTANP SQRKRYIGIGLMVLGVIFLLDQWFPHFFAWGKMWPLILIIIGIGIIIRRD" gene 1328642..1329604 /locus_tag="Dhaf_1234" /db_xref="GeneID:7258204" CDS 1328642..1329604 /locus_tag="Dhaf_1234" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_1043 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457727.1" /db_xref="GI:219667292" /db_xref="GeneID:7258204" /translation="MRRAVDSVFKGIFLILLGIVFFANMYGFLPWNFWSNVLDLWPLL LIFAGLALFFNKRIPFSAVLVAFLIGLVGYSVILGSPAPDKWLPGAHGSGQTMELAAP LDPQVEKVRLTLNLGGVDMSVRGIDGRSEPSQLAKGTYEWNGRTNYGPPEFNYRTDGD TTKLQFNSEKRPRSGDHKLLLNLSDQVYYTKVELNAGAVQGAMDFSRLQIEDLDISTG ASDIELRFGDTGGRTKLDLSTGATKLNLVVPESVGLKITMSGIASETNFAGDGLILSS QDWVSPNYEAARTKIDMDISMAAGRINLERIPAPIQSDGNPQSL" gene complement(1329722..1330552) /locus_tag="Dhaf_1235" /db_xref="GeneID:7258205" CDS complement(1329722..1330552) /locus_tag="Dhaf_1235" /inference="protein motif:TFAM:TIGR03331" /note="S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase" /protein_id="YP_002457728.1" /db_xref="GI:219667293" /db_xref="InterPro:IPR003826" /db_xref="InterPro:IPR009165" /db_xref="GeneID:7258205" /translation="MEVKPLKKLRLYGFNNLTKTLSFNMYDICYAKTPEHRDAYIQYI DEEYNAQRLTSIVTEVARIVGANILNIAKQDYDPQGASVTMLIAEEHLGPENPDNDPF SPVYTDKEGPLPDAVVAHLDKSHITVHTYPESHPHGGISTFRADIDVSTCGQISPLKA LNFLIESFAPDIIVADYRVRGFTRDVDGKKVFIDHKINSIQNYVDRKYRDLYQMIDVT VFQEYIFHTKMILKDFDLDNYLFGTAKKELSINDKRKIKQRLKKEMAEIFYGKNMPRI" gene 1330837..1331433 /locus_tag="Dhaf_1236" /db_xref="GeneID:7258206" CDS 1330837..1331433 /locus_tag="Dhaf_1236" /EC_number="1.15.1.1" /inference="protein motif:PRIAM:1.15.1.1" /note="PFAM: manganese and iron superoxide dismutase; KEGG: drm:Dred_1239 superoxide dismutase" /codon_start=1 /transl_table=11 /product="Superoxide dismutase" /protein_id="YP_002457729.1" /db_xref="GI:219667294" /db_xref="InterPro:IPR001189" /db_xref="GeneID:7258206" /translation="MPYQLPELPYAYDALEPHYDEATVRLHHDIHHKGYVDGLNNAEA KLAEAREKGDFGLVKHWERELAFHGSGHLLHTLFWTNMTPDGGGTPAGSLGERISQDF GSFEAFKKQFSAAAVAVEGSGWAVLVWNPEFKKLEILQAEKHQNLTQWGVVPLLTVDV WEHAYYLKYQNKRAAWVETWWNLVNWADVSQRFDKAVK" gene 1331631..1332335 /locus_tag="Dhaf_1237" /db_xref="GeneID:7258207" CDS 1331631..1332335 /locus_tag="Dhaf_1237" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_2047 DNA-binding response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002457730.1" /db_xref="GI:219667295" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258207" /translation="MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKE KPDLVLLDVMLPELDGLDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYI TKPFSPRELLARIKARLREERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKE FELLHIFMKRPNQVFSREYLLQKVWGYTVSGDTRTVDVHISNLRSKLKSVSPIIESVR GVGYRLAVNYSRPKDV" gene 1332352..1333011 /locus_tag="Dhaf_1238" /db_xref="GeneID:7258208" CDS 1332352..1333011 /locus_tag="Dhaf_1238" /inference="protein motif:TFAM:TIGR02135" /note="TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: chy:CHY_2045 phosphate transport system regulatory protein PhoU" /codon_start=1 /transl_table=11 /product="phosphate uptake regulator, PhoU" /protein_id="YP_002457731.1" /db_xref="GI:219667296" /db_xref="InterPro:IPR008170" /db_xref="GeneID:7258208" /translation="MANRQMFDKSLEELNEKVFELGKKVNSRVDAAIKSLAKQDLELA DNVITGDLEINELQADIEETCMLLIAQQQPFAKDLRKIVAAFKISINLERIGDLSVDV AKHTLRTGGQELLKPLVDLPRMADLVQQMVIKGIEAYKTEDGSAAKAMALMDDEVDHL YAQVFRELLVFMMEAPKTINQATYLIFVGRFLERMGDYCTNIAEEVVYVETGKRSDLN Q" gene complement(1333286..1333963) /locus_tag="Dhaf_1239" /db_xref="GeneID:7258209" CDS complement(1333286..1333963) /locus_tag="Dhaf_1239" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; KEGG: bha:BH2751 two-component response regulator" /codon_start=1 /transl_table=11 /product="response regulator receiver and unknown domain protein" /protein_id="YP_002457732.1" /db_xref="GI:219667297" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7258209" /translation="MKKIRVLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALE TLKTNMPDLILLDVFLPNGNGMHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAV DFLIKPFGFKRFKQALLNYVHLKKVIDTEQEINQADLDSRFDFLEIDYTTSSLPKGVH LLTLKLITDYLYDHPNPKSCHEIAADLSMSRITAWKYLEHLVKQGQVTVSLEYKVGRP TKLYKLK" gene complement(1333935..1335560) /locus_tag="Dhaf_1240" /db_xref="GeneID:7258210" CDS complement(1333935..1335560) /locus_tag="Dhaf_1240" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; SMART: PAS domain containing protein; KEGG: bha:BH0397 sensory histidine kinase DcuS" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase regulating citrate/malate metabolism" /protein_id="YP_002457733.1" /db_xref="GI:219667298" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258210" /translation="MEKRLSLQKEVFLYALIIGFTPLLLTLWVLQLSVNEAVEKRIEQ EAIEIASHVSVNINVINTFSQILPDRELLQSVSNNLRERNGAHVVFLDIFGKALIDPY PPNYGLQVIGKEKGRALKGETYTTKVEGVSGRAIRAFAPIINDAGKQKGVAVVAFLEP DIKLFTSQFYNSSITVLPLTIMIIIALSSFLAHSIKRRIFGMEPIEIATLVSERESLF QSVTEAIIATNERLEITVANEAALSLFPKGSQVIGENFLTLIPNPGPAHVIETKKPEY NKQLLVNGEIMLANISPLLIRDRAWGIVVTLRNRAEIKQLAEELTGVRNMVQALRAKT HEFSNKLHVIYGLLQRGHYQEAERYVDRLAEEKSFINSVVNHVQPVSVRELLLGKASE AEERKIKLIIDSQSFLFELPDTFDENSMIVVLGNLIDNAYDAVEKHPDHSSVFISLKQ DESKIEILVKDNGAGIPEENFPMLFNPGFTTKSKGTGFGLYNIKTQVSLAKGTIAFSS DADGTSFLVTIPYPILKKQKRGESYEKDQGIDY" gene 1336030..1337187 /locus_tag="Dhaf_1241" /db_xref="GeneID:7258211" CDS 1336030..1337187 /locus_tag="Dhaf_1241" /inference="protein motif:PFAM:PF03480" /note="PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_03539 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter- DctP subunit" /protein_id="YP_002457734.1" /db_xref="GI:219667299" /db_xref="InterPro:IPR004682" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7258211" /translation="MKRRFTGALVMLLSALLLLSGCGGGNAPAQTGESGGKAAVPEFT WKFQVVHNPEQMDYKMFKEVCDQVYEATNGRMKIELYPSGSFASSMEAFQACGEGVFE MHSSWPSYVKGVEYAFVPIADGNMSMGPLDRMIFLEQGGGKQLMQEAFDKLNLQFISY RIWPPDTLASRYDFKSIAEMKGKKFRTSAPDIAVAQGISAITLPIEEIFTAMASGAVD MLENCYLSYNHDLGITDIAPYGIYPDFWNCSFVETVVVNKNAWNKLPEDIKIIVKSVF DAKMIDVFAKAEITSAQDLKELDESGKVNFRRLDAEQFKAMRQDMMEIEAAETEKQGQ DSLTAKTYETIYEFYRNYYPYKELTAHWSTGLTASEAAGFQIPKYHKDANE" sig_peptide 1336030..1336125 /locus_tag="Dhaf_1241" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.934 at residue 32" gene 1337240..1337845 /locus_tag="Dhaf_1242" /db_xref="GeneID:7258212" CDS 1337240..1337845 /locus_tag="Dhaf_1242" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: har:HEAR0105 putative TRAP-type C4-dicarboxylate transport system, small permease component" /codon_start=1 /transl_table=11 /product="Tripartite ATP-independent periplasmic transporter DctQ component" /protein_id="YP_002457735.1" /db_xref="GI:219667300" /db_xref="InterPro:IPR007387" /db_xref="GeneID:7258212" /translation="MNNPPVVISEMLNSYNTLKRTVRRIPQKEEVSFVIRKYVETMDK ISIFVGKAFSFLIIPIVILQAGEALLRYVFDSPTIWSWEVAMLLYGAHFIVGAAWVMT YEGHVRTDMLYAKFSAKTQQLLELILFPLIFFPFVSVLLWKCTVNTLYSISIRETTFT QWAPPFYPLKVVITFAFLLLLFQGIAKWLRVFVLFTKGEEI" gene 1337849..1339168 /locus_tag="Dhaf_1243" /db_xref="GeneID:7258213" CDS 1337849..1339168 /locus_tag="Dhaf_1243" /inference="protein motif:TFAM:TIGR00786" /note="TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ttj:TTHA0768 putative large integral membrane transport protein" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctM subunit" /protein_id="YP_002457736.1" /db_xref="GI:219667301" /db_xref="InterPro:IPR004680" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258213" /translation="MSTTTIVIIMMVVFISILLLGHPLSWILGGLGVIFGVFFWGDLN VLNIFTRAVYKVVTTSSYVCIPLFIFMGALLEKSGSADKLFDSLYIVFGRLKGGLALA TVVISALMGAATGIIGASISIMAMLALPTMLKHRYEEKLACGTVMAAGSLGTLIPPSV ILVIYGSLSNLSIAKLFAGGMGAGICLAAIYSIYVVVLSYIKPSYGPPISKEESQKYS AGQKAAMILVSVVPTLSLILLVLGSILLGAATPNEASALGCVGAMIIAIMYKNFNWKM FKESCFSTMKTTSMIMWIIVCATMFTSIFIGLGGDKVIADMVVGVGENKWVILSVILV LLVAMGMLLDSYGVLLIGVPLFTPIVYSLGFDPIWFGIIFTLMIQVSVLSPPVAYAVF YMKGFVPHIPIGKLYWAVIPFMAMQIICIILCCIFPDIIMFLPNRMQ" sig_peptide 1337849..1337914 /locus_tag="Dhaf_1243" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.610) with cleavage site probability 0.581 at residue 22" gene 1339202..1340095 /locus_tag="Dhaf_1244" /db_xref="GeneID:7258214" CDS 1339202..1340095 /locus_tag="Dhaf_1244" /inference="protein motif:TFAM:TIGR03215" /note="catalyzes the formation of acetyl-CoA from acetalaldehyde" /codon_start=1 /transl_table=11 /product="acetaldehyde dehydrogenase" /protein_id="YP_002457737.1" /db_xref="GI:219667302" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR003361" /db_xref="InterPro:IPR015426" /db_xref="GeneID:7258214" /translation="MGKQRLNAAIIGPGNIGTDLMYKILRRSEYLELKLVAGIVAESE GLRLAREEGVATSAAGIQAILDRKDIDIVFDATTAHAHAQHAPLLKDAGIIAVDLTPA AVGPYVMPVVNLEEHIDAMNVNLITCGGQATIPIVYAISRVVPTAYAEIVATIASKSA GPGTRQNIDEFTLTTAKGIVDIGNAQKGKAIILLNPADPPMMMNNTIYALIDQVDPAI EQKITESVEEIIKEVQAFVPGYKLKIPPMFDGNKVTVMIEVEGSGDYLPQYSGNLDLE TCAALAVAEKMAKHKLAAGAN" gene 1340132..1341133 /locus_tag="Dhaf_1245" /db_xref="GeneID:7258215" CDS 1340132..1341133 /locus_tag="Dhaf_1245" /inference="protein motif:TFAM:TIGR03217" /note="TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein; KEGG: chy:CHY_1280 4-hydroxy-2-ketovalerate aldolase" /codon_start=1 /transl_table=11 /product="4-hydroxy-2-oxovalerate aldolase" /protein_id="YP_002457738.1" /db_xref="GI:219667303" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR012425" /db_xref="InterPro:IPR017629" /db_xref="GeneID:7258215" /translation="MKKVKIFDLTLRDGSHAKSHQFTPEQMAVLAEQIDSTGVAAIEF GHGNGLGGSALQYGFAAATDREYMEAVAPVVKNADLSIIILPGVGTRHELHLAKEFGA KYARMCTQITEVDIAEQHIKMAKQLGMIPIAVLPCAGIIPVKDTVRYTQMAESYGAEV IYLLDGGGYQLPEQTYERIAAMKKAVDVPIGFHGHNNLQLAVANSKAAVEAGAEYIDC CLKGFGAGAGNCPTEIFAAVMDRMEIDCGIDLYKTMDIAEQYLRPLMPRAMEVDNDRI MLGYAGCYSSFLLFAQRAGARYGVDPRDIIKEIGRRQCTEGQEDICIDVAYALAQKK" gene 1341270..1343660 /locus_tag="Dhaf_1246" /db_xref="GeneID:7258216" CDS 1341270..1343660 /locus_tag="Dhaf_1246" /EC_number="2.3.1.54" /inference="protein motif:TFAM:TIGR01774" /note="KEGG: cno:NT01CX_0498 pyruvate formate-lyase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL" /codon_start=1 /transl_table=11 /product="pyruvate formate-lyase" /protein_id="YP_002457739.1" /db_xref="GI:219667304" /db_xref="InterPro:IPR001150" /db_xref="InterPro:IPR004184" /db_xref="InterPro:IPR010098" /db_xref="GeneID:7258216" /translation="MYNVVFMKDKGKKQEQVSERIRALREEIVATVPEIFMDRALLVT ESYEETFGSSYIYRRAKALEKVLLNMDICINDKELIVGSYAGKPRGCQVFPEYDMKFL VDEMDEFALRQADKFTISEDNKAIARQIYEKWKGNTITDQALNLFPEEAAKASQQLIF LLTCLGSGIGHMLVNYEKVIQKGLAGFMLEIEELENGLDICDPEYNDKKTYYQSLTIV CQAVCKFAGRFSLLALAQAEKTADPQRKEELLQIAENCRRVPAQPAQNFWQALQALWF VQLVLHLESNGHSVSPGRFDQYMYPYYAAETDKDACEELLHCLWLKFFELNKIRNKVS SVVFGGYPMFQNIVVGGQNANGESAVNELSHLCLEATAKVHLPQPSLSVRWFYGCPEE FIRHALEVVSYGTGMPALFNDEVIIPNMLQLGYTIEEARDYAIIGCTEMNVPHKTEPF LTGGFLNILKILELTIFDGFDPVSQTQQAFQSGCVESFTTFEEFQKAYYEQLSYYLRQ HVTCDNILDALHGKICPTPFESMLLSDCLENGKSNLEGGARYNTTTLQLVGMANVADS LATIKKLIYVEKSLTWNQLKAALQNNYEDDELLRQRIINHVPKYGNDHDFVDRLGRDV VYHCCREAAKYRSPRNGTYNIAVYTLATNVLWASKVGATPDGRKMGSVLADGGVSCSH GMDKNGLTALFNSVRKIDPYKPLGSALLNIRLSPSSFNETDFQKTVDVVKSFFMNKGQ HVQFNVFDVNALRDAQKNPEKYPLLMVRVAGFSVLFTTIETILQEDIINRTLHSSH" gene 1343684..1344583 /locus_tag="Dhaf_1247" /db_xref="GeneID:7258217" CDS 1343684..1344583 /locus_tag="Dhaf_1247" /EC_number="1.97.1.4" /inference="protein motif:TFAM:TIGR02494" /note="KEGG: cbk:CLL_A1512 glycyl-radical enzyme activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein" /codon_start=1 /transl_table=11 /product="glycyl-radical enzyme activating protein family" /protein_id="YP_002457740.1" /db_xref="GI:219667305" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR001989" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR012839" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258217" /translation="MEDLIFNIQRYCLHDGPGIRTVLFLKGCHLQCRWCSNPESQRFT RELIHKEATCIKCGTCVAKCPQQVFEIREGKLDITRQKCDFCGICVRECSTTSLEISG ENPDFDKIMEIILQDKSYYDMSGGGVTLSGGEALAHRAFCRKILTLLKTENIHTAVET SGYTDTQTLIEMLPLIDLFLFDLKHISAEAHLRGTGKDNQLILDNLTTVVSAGANIII RYTLIPGFNSQPEALSGIADLMKNLNLNEIDILPYHRLGAEKYKNSGRNYELAALLPP EHETMQEVKDYFIKRGIKRVTLY" gene 1344985..1347102 /locus_tag="Dhaf_1248" /db_xref="GeneID:7258218" CDS 1344985..1347102 /locus_tag="Dhaf_1248" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_1575 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457741.1" /db_xref="GI:219667306" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7258218" /translation="MKRILSKTGSIGLDNLKIHNKLILMVLFTVLIPLILLSLIFMNN AGNKIKEQVSAANELYAALTEERMREYFYNREVDARILANSRVISEGMAKLNSFDYTK LELAELKDRFKEFLDIPLEDHDYTDIVITNKYGEIVFSNRYPQNDIAPVIFSGDFNEK AMGGEQNWSPIFRNAFIDDNLIVLATPIYSNTQEKTPGGVLNIILNQEKINGIVQNGI DKLGRTGESYLIDAEGLLLTDTMKEQAAVHIPLKDSIETEATSLLAGPLTNEEVAFHQ TTTYENYQGKPVIGTLSLVRIGDYLAGLVIEVEEEEAYGSIGDLQRSLGIMVVLIIVA ALFLAMILAQSISKRISEVIGVTHEMANYDLQSTGINALAITRKDEIGDLERAIITIR DNLKRIIQEVEKSAGEVASSSQELKLNAQQSSQAVEQVVRNAAEISARTLEQAQAVRE SSAKSGELSKVIMEASLNSEEMTKAANDMNQLIHSGLIIIEVLSTITNESSTANHEVY SSIIQAKESSQKIEKATQLITSIAEQTNLLALNAAIEAARAGQHGRGFAVVADEIRKL AEQSRESTRIIEGIVNDLKKDNTQSVHTMEKLVKINSEQVESVNITKDKYLEIAKAIK TVEERVQDLNESSLEMDRMRSEVEERLNRSVRMTEENSAGIGKVSESMEEQAASMQMI TSASEVLDECAQHLQVLVSRFKL" sig_peptide 1344985..1345122 /locus_tag="Dhaf_1248" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.785) with cleavage site probability 0.612 at residue 46" gene 1347537..1348559 /locus_tag="Dhaf_1249" /db_xref="GeneID:7258219" CDS 1347537..1348559 /locus_tag="Dhaf_1249" /inference="protein motif:TFAM:TIGR02136" /note="TIGRFAM: phosphate binding protein; KEGG: bha:BH2994 phosphate ABC transporter (phosphate-binding protein)" /codon_start=1 /transl_table=11 /product="phosphate binding protein" /protein_id="YP_002457742.1" /db_xref="GI:219667307" /db_xref="InterPro:IPR011862" /db_xref="GeneID:7258219" /translation="MFKKQILAAIVGMGMIFSLAGCGQTNEQSNNPTNQPAAGNNEPA QVEKLKGNVVIDGSGTVYPLMAHIAEDYMTNSQSGVSVQVGRAGSSAGFKKFIPGETD FADASRAIKDSEVEELKGKGLEMGANVMEIKLAYDGLTIVINKNNDWAKEMTDDEIVK MFTSKAVKGDDNVLWSDIRAEWPQEEIKFYGPNENHGTYEFFYETILDKKDLVSSVNL QQEYSTLVDLVAQDKNAIAFFGYGYYATNTDKLTAVKVDFGKGPVEPALNTIGEDLDY AGFTRLVYTYLNLNYAKEKPQVLDFAQFVVSPEGAAKFAADNGFAPLPEATYAEYTSA LKALKQ" sig_peptide 1347537..1347608 /locus_tag="Dhaf_1249" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.526 at residue 24" gene 1348669..1349589 /locus_tag="Dhaf_1250" /db_xref="GeneID:7258220" CDS 1348669..1349589 /locus_tag="Dhaf_1250" /inference="protein motif:TFAM:TIGR02138" /note="TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3135 phosphate ABC transporter permease" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter, inner membrane subunit PstC" /protein_id="YP_002457743.1" /db_xref="GI:219667308" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR011864" /db_xref="GeneID:7258220" /translation="MEDTQVRDKIRNNSAQKKHISDKVMPNFFLLMASLSVLTTLGIV IILVTDASKFFSAVPLTEVFSTELAPLRKDPSFGILPLISGTIITTLIAMLVAVPVGL AAAIYLSQFASDKLRRVFKPMMEVLAGIPTIVYGFFAYSFVTPLLMKIIPSLQAKNAL SPGLVMGIMIIPMVASLSEDAMNSVPEIIREGSLGLGATKLETAFKVIIPGAISGIMA SIVLALSRAIGETMIVTIASGSSKNFTLDITQSMQTMTAYIVEFTSGDAGSGTLGYYS LYAVGLILFIFTLGINLLAQYISRKYREVY" gene 1349589..1350476 /locus_tag="Dhaf_1251" /db_xref="GeneID:7258221" CDS 1349589..1350476 /locus_tag="Dhaf_1251" /inference="protein motif:TFAM:TIGR00974" /note="TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3134 phosphate ABC transporter permease" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter, inner membrane subunit PstA" /protein_id="YP_002457744.1" /db_xref="GI:219667309" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR005672" /db_xref="GeneID:7258221" /translation="MISRPKFMIDSQRISNRIRLNNALNYLFSLSTVFSILVLGVLLY QVGLDSMGWLDGQFLTSNLSIFPEKAGIYGAIIGTILMMLIVIPVTIILGVSTAIYLE EYAQKGRLQYLINVNISNLASVPSVIFGLLGLTVFGRLMNLGSSILAGGLTMSLLVLP IVVVAAQEAIRAVPDFLREASYAMGADKWTTVRKVILPVAIPGILTGTILAMSRAIGE TAPLVVLGIPTLIMRIPTSVMDDFTVLPIQIYYWTLDAVLKPEYANLAAATIVVLLVI LFLMNSVAVIIRNKFQQRF" gene 1350491..1351270 /locus_tag="Dhaf_1252" /db_xref="GeneID:7258222" CDS 1350491..1351270 /locus_tag="Dhaf_1252" /inference="protein motif:TFAM:TIGR00972" /note="ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation" /codon_start=1 /transl_table=11 /product="phosphate transporter ATP-binding protein" /protein_id="YP_002457745.1" /db_xref="GI:219667310" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005670" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258222" /translation="MTKDRSKNESVVFDVQGLNLWYGEDQALKNIKMQIKKNKVTAII GPSGCGKSTFIKTLNRMIENIPSVKTTGEIIYQGQNIFDKSVRVEELRTKVGMVFQKP NPFPKSIFANVVYGPRIHGIKDKKLLLDIAETSLRNAALWDEVKDRLHDNAYGLSGGQ QQRLCIARCLAVQPDVILMDEPTSALDPIATYKIEELMESLKKHYTIAIVTHSMQQAA RISDDTAFFLMGDLIEFDKTTEIFSNPKDKRTEDYITGRIG" gene 1351462..1353378 /locus_tag="Dhaf_1253" /db_xref="GeneID:7258223" CDS 1351462..1353378 /locus_tag="Dhaf_1253" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: swo:Swol_1054 signal transduction histidine kinase nitrogen specific-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, nitrogen specific, NtrB" /protein_id="YP_002457746.1" /db_xref="GI:219667311" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7258223" /translation="MCTKLPEDYEIVFDFAAIGMALLSLEGEFLRVNAYFCQFFGYDP IELSKLLFSKLVHPEDIGLGFQEIQKLLSGEIPTCHLENRFVHKTGEIKWGLSSVSLV RDEMGIPLYSIVQIQDITARKRVEDNLSYRVEFERFVTTLSTGFINCPVDKIDEEITS ALEKIGKFLRVDCIFVDQFYEEGRKYQKVMEWNPPGITPFLAPELTVEAVPRRYRKLS EKDGFNYAEKEQTLKAQLLLNIPITQAGENVGFIGVASHQGQSFSEEDIRLIKVVGEV IFSAIQRKQAEIARRNSEQLIAAAFAASPALMMILSMEGKGVIDVNDTFIEVLGYDRS ELLNKQSGELSELIRQSDYEHIYETLNQHGTILNREIELITKSGIKRTCLFSAEKIMI GKEMCLLLVSQDITEKKCLEKEMARLERLDLIGQMAAGIGHEIRNPMTTVRGYLQYIS KKDKYADEIETFQLMIEELDRANEIITEYLSLSQDRVVDFKRINLNTIIQHLYPILSV HTKMEDKSIELNLGSLPELYLDKKELCQLILNLVRNGLEAMPIKGKLTISTYIQQGNV ILEVEDQGRGIPNEIKDKVGTPFFTTKLNGTGLGMAICYSIAERHNALIDLQSGPQGT KVRVKFQGAEEVKA" gene 1353378..1354172 /locus_tag="Dhaf_1254" /db_xref="GeneID:7258224" CDS 1353378..1354172 /locus_tag="Dhaf_1254" /inference="similar to AA sequence:KEGG:Teth39_1545" /note="KEGG: tpd:Teth39_1545 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457747.1" /db_xref="GI:219667312" /db_xref="GeneID:7258224" /translation="METILLELMILTLIIHLIDTLSYSVRLNSVKSGQFALSVSLFNL FVLVSRTANMFQAPLIGWIIGESLAAGIDPIDDIRRVIFAATIGTLLGILLIPTFLRL FEVAVKRLETTGSVPLLVIEALQISNVKRMLKRATRPNKTMLERLRYREIPKRLLIIN SLVTGIYTVGVLAANYSALLVAEQYRIAAVGSSGMINGLATILLTLFIDPKSAVITDQ ALRGDRPYGDVKALVILLIAAKLIGTLLGQAIFFPAAKIIASFYGG" gene 1354281..1355102 /locus_tag="Dhaf_1255" /db_xref="GeneID:7258225" CDS 1354281..1355102 /locus_tag="Dhaf_1255" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: gbm:Gbem_3715 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_002457748.1" /db_xref="GI:219667313" /db_xref="InterPro:IPR004843" /db_xref="GeneID:7258225" /translation="MRTANKGLSRRTFIIGGIGLLSYLYFNVHSLAVKHYTIAIDGLP QEFEGFTILHLTDLHAKKYGERQDKLIELINRQNFDMVAMTGDFIDKDNPDVEPTLAL IQGLAAKPIFFVPGNHEWRHDFRIKSSLEEHGVKILDNKNAKLAKGEAQLWIAGVDDP YLHRDKLEQALHGIADAQPKLLLAHAPNIFKPAAASGVELVLVGHTHGGQVRLPLIGA IVAPGQGLFPQYDYGHFTTGSTNMIVNGGLGESTLPLRFCSRPEIVLVKLVSAPQ" gene 1355127..1355969 /locus_tag="Dhaf_1256" /db_xref="GeneID:7258226" CDS 1355127..1355969 /locus_tag="Dhaf_1256" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amr:AM1_1244 oxidoreductase, short chain dehydrogenase/reductase family" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_002457749.1" /db_xref="GI:219667314" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7258226" /translation="MHTKSLWEAVLFPPRALNRSRLEAKLRGKTILITGASSGIGEAL AYQLADSECHLILVARTEAKLFQVKQNIEQKKAAVSIFPADLREPEQVKELLNFIEQL PAGLDVFVNNAGLSIKRGIKDSLDRYHDFTRTMAINYLAPVQLALSLIPLLEKNKGQI INISTINVLLLPLPHWAAYQASKAAFDTWFRSAAAELNAMGIATSSVYLPLVRTPMIL PTKEYQKLPAMSPKQAGKIVAKLIYTQRSKYRPWWLLPGQFASIVCRGIWECAAPAYL TKRR" gene 1355980..1357536 /locus_tag="Dhaf_1257" /db_xref="GeneID:7258227" CDS 1355980..1357536 /locus_tag="Dhaf_1257" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: amr:AM1_1243 2-succinylbenzoate--CoA ligase" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_002457750.1" /db_xref="GI:219667315" /db_xref="InterPro:IPR000873" /db_xref="GeneID:7258227" /translation="MIKLLYTLFKIGLLSPLGLYSLAVALGKHGINIMALLSLAAKVY GEKIGLIDEKEELTYRELYARSRRIALLLQEKYQLQRGNKVGLICKNHTSLIKALFAV AQSGADIYLLNAEMSSSQFNQLAEQIDFNLVIYDFEASPLLEASVYQKGKLLSYHEHL PALNNLAEQSFPENLQIQPSSSGRLVILTGGTTGKARAAAHQPSLYNYLNPFLTLINR LKLTHYQTAYIATPLYHGYGLAILLVLITLGKKVVIQKGFDQVKACRLIRKHQVEVVT VVPLMIDKMLKQNPEDLQSLACIVSGGAELNPKLTRETTEKLGDVLYNLYGTSEAGLN IIATPQDLSYAANTLGKIIKGVRLKVMDDNKHEVPIGSVGQFCIKNAWSMGNKSGPWL ETGDLGYRDHQGYYFLCGRVDDMVVSAGENVYPADLEQVLRNHPHIKEVAVIGISDER FGQRLKGFVVREEGACLTQEELLAWLRPRVARFQLPKEIVFVQQLPYTPLGKIDKQQL RNSMGGDCGD" sig_peptide 1355980..1356057 /locus_tag="Dhaf_1257" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.828) with cleavage site probability 0.519 at residue 26" gene 1357517..1358044 /locus_tag="Dhaf_1258" /db_xref="GeneID:7258228" CDS 1357517..1358044 /locus_tag="Dhaf_1258" /inference="similar to AA sequence:KEGG:Csac_0890" /note="KEGG: csc:Csac_0890 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457751.1" /db_xref="GI:219667316" /db_xref="GeneID:7258228" /translation="MVIVVIKAELMGALIEVLIKGRIECYVKKSSAYNPYSPGQIYDW DFKLSWGDYLFSDSYRGFNPYSGVEYIYYKERSEPIWSCDYVGYALAGAGVSEKEIYG FLKQGRGKHLLEWAGECTGTLFSDYSYQEGDFGYQTRFRSSSQGVLQTEEIYCRGRLA ATQLSAGYWREEAAP" gene 1358041..1358610 /locus_tag="Dhaf_1259" /db_xref="GeneID:7258229" CDS 1358041..1358610 /locus_tag="Dhaf_1259" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cpy:Cphy_2100 hypothetical protein" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457752.1" /db_xref="GI:219667317" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7258229" /translation="MRHRGTKELETEGLILRRFELTDAEAMFKNWANDGEVTKYLTWP PHENVEVSLEVLKDWVSLYEDEKFYQWAIVLKENGSEPIGSISIVKMDDRIDMVHVGY CIGKRWWGKGVTSEALAELMRFFFAEVQVNRIESRHDPRNPNSGKVMKKCGLLYEGTL KQGDRCNQGICDCSMYGLVAEDYYANHQR" gene 1358801..1359334 /locus_tag="Dhaf_1260" /db_xref="GeneID:7258230" CDS 1358801..1359334 /locus_tag="Dhaf_1260" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: chy:CHY_2492 HD domain-containing protein" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002457753.1" /db_xref="GI:219667318" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7258230" /translation="MYKEKVIEKMKEVFREVPYGIEHTLRVLQNAESIMEGEEYPQEE RELVSIVTILHDIGAIEAQRKHGSMEARFQELEGPPVSRKILEEIGYNAAQIDRVCYI VGNHHTPSRIDGLDFQIQWDADLLENLGAMEISKDRVKAEHFIAKNFRTRTGKAMAYE RFVREAAMMEDPDQESR" gene 1359573..1360481 /locus_tag="Dhaf_1261" /db_xref="GeneID:7258231" CDS 1359573..1360481 /locus_tag="Dhaf_1261" /inference="protein motif:PFAM:PF08338" /note="PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dau:Daud_0459 NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="domain of unknown function DUF1731" /protein_id="YP_002457754.1" /db_xref="GI:219667319" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR010099" /db_xref="InterPro:IPR013549" /db_xref="GeneID:7258231" /translation="MNVLIFGGTGFVGRNLTKELLENGYQVYIVTRNAQRMAGTLAGG AGVIEWDNIFPLASLKNLTQIDAVINLAGESIGNRRWTPSVKEEIIASRLRTTGAIVT AINEGVIQPEVLINASAVGYYGPRGDEEITESEGPGKDFLAQVCQKWEEEAYKVQDSL TRVVTPRIGVVLGNEGALNRMVLPFKFYLGGPLGTGEQWLSWIHSQDLISMIRFIIEH PELSGPINAVAPHPAKMKDFSKTLGKVLNKPSWFPVPEILLKIALGQMAEMLLHGQRA VPKQMQQAGFAYRYGNLQEALENALL" gene 1360567..1361262 /locus_tag="Dhaf_1262" /db_xref="GeneID:7258232" CDS 1360567..1361262 /locus_tag="Dhaf_1262" /inference="protein motif:TFAM:TIGR00035" /note="TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: btl:BALH_1986 aspartate racemase" /codon_start=1 /transl_table=11 /product="aspartate racemase" /protein_id="YP_002457755.1" /db_xref="GI:219667320" /db_xref="InterPro:IPR001920" /db_xref="InterPro:IPR004380" /db_xref="InterPro:IPR015942" /db_xref="GeneID:7258232" /translation="MKTIGLIGGMSWESSAEYYRLINEEVKRRLGGLHSAQCILYSVD FAEIETCQSSGEWGKAAEILANAARSLEAAGAEFIVLCTNTMHKVADEIQAGLQIPLL HIADMTAQQALTSNIRTIGLLGTRYTMEQEFYSSRLEAQGIKVLTPEEGDKAVVNEVI YQELCLGIINQESRNQFKRIIADLVEQGAQGIVLGCTEIGLLIKQEDSAVSLLDTTLI HASGAVDYALTEG" gene 1361280..1361768 /locus_tag="Dhaf_1263" /db_xref="GeneID:7258233" CDS 1361280..1361768 /locus_tag="Dhaf_1263" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457756.1" /db_xref="GI:219667321" /db_xref="GeneID:7258233" /translation="MKQDKKLKEVFIVIRVIAIIKERHRTLGYRLLDEISATMQDMGL ASTLEYIKEHGCRNAHASGVALVADEGTIDMLPVIDAQTKKCIKNDKYIIVGTYKEGD RITSIRVTDYTGTIMDIDVKQLLMLEDKGYCNAKIQNVGEKRAIKPLDLPWPVLRWSP AK" gene 1361809..1362096 /locus_tag="Dhaf_1264" /db_xref="GeneID:7258234" CDS 1361809..1362096 /locus_tag="Dhaf_1264" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457757.1" /db_xref="GI:219667322" /db_xref="GeneID:7258234" /translation="MNINNDVGIIEGVYDITLPKVPTSLHRWGRVVWLQDIEIGSRGK LLYIQDGQCSRTHLSRITNVIKAMDYVEIHTENNIYRLRLLPGESYHSGNN" gene 1362206..1363813 /locus_tag="Dhaf_1265" /db_xref="GeneID:7258235" CDS 1362206..1363813 /locus_tag="Dhaf_1265" /inference="similar to AA sequence:KEGG:Sfum_0797" /note="KEGG: sfu:Sfum_0797 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_002457758.1" /db_xref="GI:219667323" /db_xref="GeneID:7258235" /translation="MNHYRPVILADQRVVSDFELDPLTRKISIKILQGHEQGNKGMVD TLRQNLQQRLGVPVEIPLALMNHLVKLVRDDNEVITVTLAAGNDINEDGKAASYQAID AEPGDHTDAHVGLAIDIGTTTVVVYLVNMVNGDIIAKASDYNGQIKLGDDILSRIMAA REEKGLKELQTLIVNTLNALIKQACLEADLKPQAISGVCIGANTTMVHLCLGLDPGSI CRAPYRPAVNNAGIFCAGEIGLAVHPLAPIYCLPSIGSYIGGDVLAGILVSGMHKQEE VSLLVDIGTNGEFILGNQEWLVGCAGAAGPALEGGVTEWGIRAEQGAVDQVSIDSEHH VRYTTIDNAPARGICGSGLIDSLAELFLNGLINRAARFTDGRERFTIVPAGESATGKE IFISQKDINSLMRTKGAVNAALEVLMESVGCQWEEIAKFYAAGAFGQYLPIESAITIG LYPDLPREQMLRLGNSSGEGARQVLLSHSKRQEIEEIAGKITYFEMNASSSFMDKYGG SRFLPHTNMDLFPSVKEKLAVRQRGLC" gene 1363877..1364695 /locus_tag="Dhaf_1266" /db_xref="GeneID:7258236" CDS 1363877..1364695 /locus_tag="Dhaf_1266" /EC_number="4.2.99.18" /inference="protein motif:PRIAM:4.2.99.18" /note="PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: bcl:ABC0889 hypothetical protein" /codon_start=1 /transl_table=11 /product="DNA-(apurinic or apyrimidinic site) lyase" /protein_id="YP_002457759.1" /db_xref="GI:219667324" /db_xref="InterPro:IPR000214" /db_xref="InterPro:IPR012319" /db_xref="InterPro:IPR015886" /db_xref="InterPro:IPR015887" /db_xref="GeneID:7258236" /translation="MPEIPEMETYKNYLQLSVLDKRIVGTEITRARSTNVPTDEFVRW VQDTSIEQVLRYGKYLILALSSGKALCAHMMLDGRMYYEVAGEPVELPGRSHIRLKFA DHSILHFCDLRLGYLKLLAPSQVDAIKEGLGLDPLDAEFSLAAFLNILSGKRGMIKPL LMDQKNISGIGNAYSNEILFAAGILPERKTPTLTDGERDRLYGVIPDLLQQAIAKGGY IEEPFASWDKLSGGMIPYFKVYDRTGQPCLQCGEPIKQKTVGGRNAYYCLTCQH" gene 1364765..1365229 /locus_tag="Dhaf_1267" /db_xref="GeneID:7258237" CDS 1364765..1365229 /locus_tag="Dhaf_1267" /inference="similar to AA sequence:KEGG:RoseRS_0451" /note="KEGG: rrs:RoseRS_0451 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457760.1" /db_xref="GI:219667325" /db_xref="GeneID:7258237" /translation="MGFKIKRRPFASKLLIALHIILGLGAIFGGVVLIIDPSGGIIQM PVTILEGSIFSSFLIPGIILLTLLGILPLLAAYGLVRNQPLPIANRLNLFADKDWAWT YSLYIGFILIIFIAVEAYIIKGFVAIHLGYIFGALLIQALTLLPSVQRYYTL" gene 1365290..1365832 /locus_tag="Dhaf_1268" /db_xref="GeneID:7258238" CDS 1365290..1365832 /locus_tag="Dhaf_1268" /inference="protein motif:PFAM:PF08002" /note="PFAM: protein of unknown function DUF1697; KEGG: det:DET1387 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1697" /protein_id="YP_002457761.1" /db_xref="GI:219667326" /db_xref="InterPro:IPR012545" /db_xref="GeneID:7258238" /translation="MKYIALLRGINVGGKNKVPMAQLKQCFTKAGFQNVVTYINSGNV IFDAQAQDHLMLAEKCKVILEEEFKFPVDLALIDEESMREALEHAPDWWDEDPEAKHN ALFVIHPATAADIVAEVGATKPEYEQVFAHGPVIFWSAQLKTFSRTRWSKIVGTKTYK SVTIRNANTTKKMLELTLSD" gene 1365932..1366561 /locus_tag="Dhaf_1269" /db_xref="GeneID:7258239" CDS 1365932..1366561 /locus_tag="Dhaf_1269" /inference="similar to AA sequence:KEGG:Moth_1159" /note="KEGG: mta:Moth_1159 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457762.1" /db_xref="GI:219667327" /db_xref="GeneID:7258239" /translation="METNYRVAYHKFWQDIKKREPAEITATRAVSYNEDTGQFSVIFF AQEYIADSKQETVYRKADGHAPDIMDAIIILNYLAYAQPLSEAEPRWVSIKEIPGGMI FYAAFLKTAISPLLKAFGHQAQLLDTVAASLGGQPAQMGSSSVLFQAFPEIPVCVVIW EGDEEVKANATILFDPSIEPMLHSESIIGLGISLANRLNKRAAKESSSR" gene 1366630..1367418 /locus_tag="Dhaf_1270" /db_xref="GeneID:7258240" CDS 1366630..1367418 /locus_tag="Dhaf_1270" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: rci:LRC338 hypothetical protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002457763.1" /db_xref="GI:219667328" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7258240" /translation="MEIFLQEFNEAQDVSMLFIHGGGLSGWMWDKQIKALNDFHCLVP DLPGHGKSRELQIFSIKECAQLMAALIKSKGHHGKAHVVGHSIGAQILLQLLADSPEV VHTGVVHSALVRSLWGVSSLIKPTVKLTLPLTRKKWFAKLQAQTLSIPAEYFPRYYEE SKSISAETLAGLLRENAAFKLPEGLENNPVPTLVLVGEKERGVMIRSAQDLVSFLPHA EGYIVQSAGHGFNFEDPVLYNEILQAWLAESRLPTGSLKRILKP" gene 1367759..1369360 /locus_tag="Dhaf_1271" /db_xref="GeneID:7258241" CDS 1367759..1369360 /locus_tag="Dhaf_1271" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: amt:Amet_2035 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002457764.1" /db_xref="GI:219667329" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7258241" /translation="MKRYNKKWTVLGMLIMSLALVLAGCGGSNAAVTKEKTNKDELVI YIGYGMTSGGYDPCTGYGIYGDGIFHSNLLKFNAQIEAEPDLAVGYTVSDDGLTYTYT LRDDVKFSDGEPLTADDVAFTYMTAKASGSSVDLTMLEKAEAKDKVTVVFTLNKKWSA FASTTALLGIVPEHAYGPGYGDNPIGTGPFKVAQLDKEQQLIVVPNDYYYGTKPAFKK ITILNLDEEAALAAAKSGNLDVVMVNPEYAYEEVPGMSMARIKTVDNRGFNLPVIGET KDGKGNVIGNNVTSDYAVRKALNIGIDRETIIQNALNGIGTPAYGRVDALPWNNTPEF EDGRVEEAKALLAEAGWIDTDGDGIREKNGIKAEFKISGRTDDLQRYNLAVALSEDAK KLGINLIAEALAWADCKALTRTIPTCWGSGDYNPIDLYNAHYSQMIGVGTSNPASYAN PKVDDYIEKALAATSMAEAIDYWKLSQWDGETGTSVDYPFLWIVNIDHTYFVRDGLSL GEQRIHPHGHGVPVIANLNEWTFES" sig_peptide 1367759..1367851 /locus_tag="Dhaf_1271" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 31" gene 1369427..1370425 /locus_tag="Dhaf_1272" /db_xref="GeneID:7258242" CDS 1369427..1370425 /locus_tag="Dhaf_1272" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_2036 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457765.1" /db_xref="GI:219667330" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258242" /translation="MKLRNKVLQKLIVPSFLRMITLLVAMSVIAFALVMSSPVDPIDG FVGSESNVSQEQRDNVARYWGLDKPPAERFLIWAGHVLQGDMGISSTYRLPVTQVIGE RVKASLALMGVAWVLSGVMGFVLGILAGVNRGRLLDRFIKTFCLALSSAPTFWIGLLI LMVFAVNLQWFPIGLAAPIGKIASEVTLWERIHHLILPAFTLSIVGVANIALHTRQKM IDVLESEYVLFARARGESTYSIVKRHGIRNIMLPAITLQFASFSELFGGSVLAEQVFT YPGLGNAVTQAGLRGDVPLFLGIALFSAVFVFTGNLLANLIYGIVDPHIKEANPHG" sig_peptide 1369427..1369525 /locus_tag="Dhaf_1272" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.481 at residue 33" gene 1370418..1371278 /locus_tag="Dhaf_1273" /db_xref="GeneID:7258243" CDS 1370418..1371278 /locus_tag="Dhaf_1273" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_2037 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457766.1" /db_xref="GI:219667331" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258243" /translation="MDNYTMTAELTRNGGFNRRTKTFLMLGFCAAVLIAITVVGVTMG PEAYAPDYGAKKLAPSAAHWFGTDYLGRDMFARTIKGLSTSILVGLLAATVSAVIALV LGIVAATAGGKVDQCISWLVDLCMGIPHIVLLMLVSFMLGRGLQGVIIAVAVTHWPAL TRVVRAEVLQIRHAHYVQAAQKLGKSSWTIAKDHIAPHVFPQFVIGLILLFPHAILHE AAITFLGYGLPLDMPAVGVILSEAMKHLATGMWWLAFFPGVMLLLIVMMFEAIGESLR RLIDPYSAQE" gene 1371290..1372201 /locus_tag="Dhaf_1274" /db_xref="GeneID:7258244" CDS 1371290..1372201 /locus_tag="Dhaf_1274" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: amt:Amet_2038 oligopeptide/dipeptide ABC transporter, ATPase subunit" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457767.1" /db_xref="GI:219667332" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258244" /translation="MSLLEVNNLSVKFRMYEKGLRQRELEVITHLDVTIHKGEILAVV GSSGSGKSLLAHAILGILPANATMAGTLKYEGEPLTPQRQKKLRGHEIALVPQSVSYL DPLMRVAKQVRGEQGTQEQQRKAFERFALQEEVGQKFPFQLSGGMARRVLVATAVLGD AKLIIADEPTPGLNPEIAEETMRIFRELADQGCGVMLITHDIDLALKYADRIAVFYAG TTVEVTPVENFLGGEEALRHPYSRALWQALPQNGFHPIAGSQPYAGSILTGCRFAPRC AQISRECAGEVPMRRVGDCEVRCVHAS" gene 1372191..1372790 /locus_tag="Dhaf_1275" /db_xref="GeneID:7258245" CDS 1372191..1372790 /locus_tag="Dhaf_1275" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_2039 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457768.1" /db_xref="GI:219667333" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258245" /translation="MLLEGKNICFRYGQPWLLQDINLQLEEGERVGLIGPSGCGKSTL AKILSGYLKPIRGEVLLAGKPLPEKGYCPVQLIYQHPEKALNPRWKLGASLAEGWEPD DQTLEELGIEKEWLKRYPNELSGGELQRFCIARVLGHPTRFILADEISTMLDVITQAQ IWDVLLKIIKERNMGLLTVTHNRALAEKICTRLIHFEDL" gene 1372972..1374429 /locus_tag="Dhaf_1276" /pseudo /db_xref="GeneID:7258246" gene 1374447..1375022 /locus_tag="Dhaf_1277" /db_xref="GeneID:7258247" CDS 1374447..1375022 /locus_tag="Dhaf_1277" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002457769.1" /db_xref="GI:219667334" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258247" /translation="MGYLGFYFDMTACIGCRTCQIACKDKNDLKVGTIFRQARTYEVG VYPAPGAYHYSGSCNHCAQPKCVEGCPTGAMHVAEDGTVQHDRGKCIGCRYCTWACPY GVPQFIKDLGKVGKCDGCKDLRDEGKNPVCVDACPMRALEWGDTDELKAKHGDTTSEL AILPEASRTKPSLVIKAKRIAAQKDFRYKEV" gene 1375025..1375855 /locus_tag="Dhaf_1278" /db_xref="GeneID:7258248" CDS 1375025..1375855 /locus_tag="Dhaf_1278" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002457770.1" /db_xref="GI:219667335" /db_xref="GeneID:7258248" /translation="MGESALLVFSFFMQASIGIMLFMTLGKILHADQEFKKAAYLAAG LSIIGVIASLAHLGKPLAALNSLLNVGSSWLSREVLFSGVFMGIAVLYALVQYLKVEN QGIKAALRWAGSGIGLIAVFSMAKLYSTASVPVWQGANTFADFYGTTLAVGALLFLAL SFKELQGKDKKILGLIVLAAVVIQAAVAVPYGINLGLGGSAAHASAEILNGLSAAVGL KWLLVLGGAGILLWPTLQQEAKSATGMIYLAGIALVCGQFIGRYIFYAAMVVTNIGLI" gene 1375875..1378472 /locus_tag="Dhaf_1279" /db_xref="GeneID:7258249" CDS 1375875..1378472 /locus_tag="Dhaf_1279" /EC_number="1.7.2.3" /inference="protein motif:PRIAM:1.7.2.3" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mta:Moth_1389 trimethylamine-N-oxide reductase (cytochrome c)" /codon_start=1 /transl_table=11 /product="Trimethylamine-N-oxide reductase (cytochrome c)" /protein_id="YP_002457771.1" /db_xref="GI:219667336" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7258249" /translation="MTKFFDKINEMTISRRNFIKASTAAAASLSLVGCGNTLTTTNAG QAANEEGTWITAACWHNCGGRCLNKALVVDGVVVRQKTDDTHPDSPDYPQQRGCARGR SQRQQIFGADRLRYPMKRKNWNPGDGGKRELRGKDEWVRISWEEALDHVAAELKRVKE TYGNKAILAKSTGPALNAYGGAMTYWGCTSDGAWPKPQQFMNGGRSRGSNDRLDLRNS KLIVLWGANPVWSSGGNPAYNFKQAKEAGAKFIIVDPLYNDTAQLLADQWIPVRPGTD TALLLGMAHYMITNNLHDQEFLDKYCVGFDAEHMPEGADPKENFKDYVLGTYDGTPKT PEWASEHCGTDPDLIRSFAHEVAVTKPMTFTSSSAAARTSVGEQFCQAFLTVGWMTGN VGKPGASVCSNNRHNTQSYGGPALVKAGGAGGKSPANPVYKEPTFPGPDPFKTDWHGI VIDEAWDAVINGEYTAGVRGKQPCDIRMIWNIGSGNVLNQNTDIMKGIEAFRKVEFVV TSAHFLTATAQYADIVLPATTEWERLGGFLTGNPEMIIFYSQITQPMFEAKDDDWMYA EIGKRLGLDPADFDPLSPEQKLFNMVAGCTVMKEDGSGYEKLVTITAEDIAALGVKGT PQEGRISYQEFKEQGVYQVPRSPGDQYTYIDYKDFIEDPEKNPLGTESGKFQIHSQGL ADTINAYGWNTLAPIPKYQYVTEGYEETFANFEKKEKSGYPLQLTTIHYARRSHSTLD NISWLREAFQNRLYIHPADAAARGIAKNDIVKISSRHGQVIRPVYITERIMPGTLTLG QGAWAEVDDETGICKAGATNVLNGGLPTGQGVQAYNTCNVQVEKYDSKLETDYLWPKR IVAAQGGNK" sig_peptide 1375875..1375994 /locus_tag="Dhaf_1279" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.496 at residue 40" gene 1378472..1379050 /locus_tag="Dhaf_1280" /db_xref="GeneID:7258250" CDS 1378472..1379050 /locus_tag="Dhaf_1280" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1388 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002457772.1" /db_xref="GI:219667337" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258250" /translation="MAQYGFYFDMTACGGCKTCQIACNDRNDLKPGTLFRRVKGFEGG KFPTPWIYYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCPY GVPQFIEETGQVSKCDMCQNLVEKGENPACVDACTMRAIKWGELDELRAKYGADAVSD LPVLPSSAKTTPSVLIKPKTVALNKEFIVKED" gene 1379053..1379895 /locus_tag="Dhaf_1281" /db_xref="GeneID:7258251" CDS 1379053..1379895 /locus_tag="Dhaf_1281" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002457773.1" /db_xref="GI:219667338" /db_xref="GeneID:7258251" /translation="MGGETALLIFSFCMQAAIGIMLFMTLSHQLYKGKVFKGAAATAA GLSVIGVLASLAHLGQPFHALNSLFNLGSSWLSREVLFSGMFMGVAVLYALVQWFKAD ASALSAGLRWLGSGIGLIAVFSMSKLYTTASVPVWQGINTFVDFYATAIAVGALLFLA VSMKELQNADKKIFGYLVLAAVIIQAAVAIPYAINLGLGGPAAQASAAILGGMSLIIT VKWILVLGGAVILLWPTLQKSAKPENQSSSLLYASLAALICGQFIGRYVFYAGMVAST IGLT" gene 1380116..1380934 /locus_tag="Dhaf_1282" /db_xref="GeneID:7258252" CDS 1380116..1380934 /locus_tag="Dhaf_1282" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002457774.1" /db_xref="GI:219667339" /db_xref="GeneID:7258252" /translation="MYSGEWSLILFSILTQCAVGIWVVAVGLRTFLTGKTAPEIVAKL TRRPLLVVGPLMCVALVISIFHLGSPTQAYASVANLLTSWLSREIVFSGLFLFFWVIS IVFYRREAPGTALGWFTSALGLIAVFSMSSIYYTTPIPAWASANTYISFFATMLILGA VVCALFMKTVRDFPNVPEVRGLLWKLSILTLGVLLVQLAFFLFNSESYSLLPLLYCTL LFLGGINFVVYSFQNFKNPGKSLRSVFYLSFILLFSAQIIGRYLFYAGAIPIMG" gene 1381016..1381522 /locus_tag="Dhaf_1283" /db_xref="GeneID:7258253" CDS 1381016..1381522 /locus_tag="Dhaf_1283" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457775.1" /db_xref="GI:219667340" /db_xref="GeneID:7258253" /translation="MLFLNRFTKTYQKLLFALGLSIVFLLITAVTRSTVKQAGGIACF FIAGILILAVFKVLFLEFVEDPDWRMKGKKAIEFLHTCLGWIVFVLVIYHSLYFLSLA FWPQNEISPNYYITGVLALIPMSLVVTSGLDKNIMARSKEIKSSYFNHIFMTILLAVL IVIHINFQ" sig_peptide 1381016..1381105 /locus_tag="Dhaf_1283" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.242 at residue 30" gene 1381577..1383259 /locus_tag="Dhaf_1284" /db_xref="GeneID:7258254" CDS 1381577..1383259 /locus_tag="Dhaf_1284" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sth:STH732 two-component sensor histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457776.1" /db_xref="GI:219667341" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR009056" /db_xref="GeneID:7258254" /translation="MMKDSLTHRFMLFTTIVVVFIMLINFIWDYRNQRAQATLEMHEK AQVITKQLIATREVIAKNQNRINYDSKGNFEFKHLNPAAVGMQIGDIFGQLTHYSIKQ TRLDYRSAGNAPDDYEAQGLLRFSNEPHLAEIWGEDVVAGERVFRYMVPLHMQEECLS CHGEPIGDLDITGHCKEGYKVEDLGGAISLIMPMDIFLHGIKLNVYRHLSFSLLLIGV IVISMYLLVTRLVTRSLGELKGATAQVGQGDFDIDLNRIKAQGEIKELAQHIQEMADQ LKDLYQNLEAKVEKRTHQLKLVNEDLRIKQDELEAANIKLNEINTYKSEFLAIMSHEL RTPLTSVMAFTDLLLQDLPKELKQERQNLKYIKANSQNLLKLINNILDLAKIEAGRLE LKLEYVDMADVMGAIDSVIAPLAKKKGITWEISLDPEVSLLRADPEKLRRVIENLVGN AIKFTPAEGRVEIEVKNGPRDNWLMIRVIDTGIGIPPEEQEEIFERFTQIDSSNSRKY GGTGLGLALAKELVSLHKGELWVESELNKGSTFVVLLPKDPDKVDPGGNKEI" gene 1383284..1383988 /locus_tag="Dhaf_1285" /db_xref="GeneID:7258255" CDS 1383284..1383988 /locus_tag="Dhaf_1285" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH1041 two-component response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002457777.1" /db_xref="GI:219667342" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258255" /translation="MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESF QKESPDLVILDVMLPLIDGYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYL VKPFSPVELGLRVKALLRRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVY LTPKEFELLTFMAEHPDQVFTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAK PQYIQTVWGIGYKFSQ" gene 1384179..1384439 /locus_tag="Dhaf_1286" /db_xref="GeneID:7258256" CDS 1384179..1384439 /locus_tag="Dhaf_1286" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457778.1" /db_xref="GI:219667343" /db_xref="GeneID:7258256" /translation="MVISSLIVKCLPGFEEPLLSRLKDLERVSVEGVMNGDIILVMEN ELVHDAVQMIESGIGALPGVTGVYPVYIAMDTDFPEGGVNFA" gene 1384432..1385010 /locus_tag="Dhaf_1287" /db_xref="GeneID:7258257" CDS 1384432..1385010 /locus_tag="Dhaf_1287" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1057 MauM/NapG family ferredoxin-type protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457779.1" /db_xref="GI:219667344" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258257" /translation="MLKGNEPISRRDFLGTVVNDFCRLTINAVKATAPGKSLIRPPGA IEEIAFLAGCQRCGKCSGACEDRSIHIAGPDEGVLVGTPYLVPDEQPCTFCLRCIEVC PSGVLEKRESSQSYAIGVAKINQDHCLAYHEQLCSSCLYACPMGIKAIELRDFRYPII RTECCIGCGRCIKACIAENPAITVVPCPTKKE" gene 1385026..1385331 /locus_tag="Dhaf_1288" /db_xref="GeneID:7258258" CDS 1385026..1385331 /locus_tag="Dhaf_1288" /inference="similar to AA sequence:KEGG:Glov_1059" /note="KEGG: glo:Glov_1059 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457780.1" /db_xref="GI:219667345" /db_xref="GeneID:7258258" /translation="MVRCQKTAKVLLLMLLVLMLSALVLTGCQSQPVDQSANPPAPVG EKEPGTAMGSATVEGFPPPASHAIEGRENCGTCHNEGVGGAPKTPHPELTVCRQCHV" sig_peptide 1385026..1385118 /locus_tag="Dhaf_1288" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.713 at residue 31" gene 1385365..1387641 /locus_tag="Dhaf_1289" /db_xref="GeneID:7258259" CDS 1385365..1387641 /locus_tag="Dhaf_1289" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH917 nitrate reductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457781.1" /db_xref="GI:219667346" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258259" /translation="MEFSRRNFLKTCAISAAMMTVGCTSQTKTIQVDPPEPAPSAPKQ IDVDQWVKSVCRYCGTGCGVLIGVKDGKVAAVKGDPDNEGNKGLLCAKGYYLPQVITH SERVTKPLIRKNGKLEPCTWDEAMELVTAKFKESIANNGPDSVAFYGSGQQLAEEGYV ANKLFKGAIGTNNIDGNPRLCMASAVGGFTTTFGADEPMGCLEDFEHANVFFIIGSNI AEAHPVLFGRLTDKKKKDPDTKIIIADPRRHRSHEIADISLQFVPGTDMALLHAMAYV IIEEGMADEEFIAKHTSFSNGKEAITFAAYKEFLKEFTPEKAEKVTGLPAAQIQEVAR LFGEKGKNTMSMWTMGINQRVAGVWANNLIHNLHLLTGKICKPGSTPFSLTGQPSACG SVRETGALSHLLPGHRVIANEKHRKEVAELWGVPADRISPQAGLHTMELFKACGDGRV KCLYVMCTNPAHSLPNVNAYQEGFEKVFLVVAEAFHPTATTKYADVVLPAAFWCEKEG VYGNTDRRTQHLAKAINPPGEAKPDLDILLDLAQRLGYGELFPFKTPEDVWNEYLKCT TGTHMELATYPALREAHGIQWPVKDHQGNKGAVRRYVAPEDPYVKEGIDFYSAKDHKA VIFARPYLGPAEVVDEEYPYYLTTGRILEHWHTLTMTGKCPTLMRAVPKQYVELNPQD AAELGIKEGDTVRLVSRRGKVEIPVRVGKPGEPRPGLLFALWFEPDPLVNAVTIDAVD AASKEPEFKICAVKIEKV" sig_peptide 1385365..1385442 /locus_tag="Dhaf_1289" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.528 at residue 26" gene 1387658..1389070 /locus_tag="Dhaf_1290" /db_xref="GeneID:7258260" CDS 1387658..1389070 /locus_tag="Dhaf_1290" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457782.1" /db_xref="GI:219667347" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258260" /translation="MLKFSWNRCRRLVQAGMILIFLLPLTGMYQVLGTLSSSRILGLT LTDPLAFGEVLLASKTITMTFLISALWIAGLYLFLGKAFCSWICPIGFLIEGVDALKR KWPWLTRIQIHKNVIDEQNQYYWALPFFLVLSLVVGIPVFQTLSPIGIIYRAFLFGLG LEVLLILIIIVLELAGYRRGWCRMLCPIGAFYALSARWSPVKVRCDTDKCVQCFQCVK ACDYTAASLKNMIEEGKVYAASSLCTRCGRCIDVCPARALQFSLKPEKSPEPESMTMA KNLKAAAPAAGRISRRTALQGVGLVVLAGLSYRPAKALAAAAPKVFRPPGAVGDEEFL AKCVRCGKCIEICPDKTLLSAHLDQGLNLGTPYFIPRQIPCSLCMECPDVCPSGALVP LDMREVKIGIAEIDQDRCYAYQDDVCRSCYNSCPLIDEAIMMEGFQYPVVDPEICTGC GICEYVCVMEYPAIRIKRMS" gene complement(1389178..1390707) /locus_tag="Dhaf_1291" /db_xref="GeneID:7258261" CDS complement(1389178..1390707) /locus_tag="Dhaf_1291" /inference="protein motif:PFAM:PF00614" /note="PFAM: phospholipase D/Transphosphatidylase; KEGG: cth:Cthe_1396 phospholipase D/transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase D/Transphosphatidylase" /protein_id="YP_002457783.1" /db_xref="GI:219667348" /db_xref="InterPro:IPR001736" /db_xref="GeneID:7258261" /translation="MKNLPMLYRVIFIALLLLLQIFALVMIIWRFSSYFIYFYTVCTS LSIVALLYILNSKSDPAYKIAWVIPILIFPIFGGLFYLLFGRNKLSKRKKREMKAVNE KMNQSLIPNQAILQELEAQNHRAANLSRYIDKYSYCPVYQNTITEYLPLGELMYERLL EELRKAEKFIFLEYFIIDEGVMWDSILEILVEKVQQGVDVRVLYDDVGSLFKLPYGYE KKLEEKGIKCSVFNRLIPVLSIHMNNRDHRKIAVIDGKTAFTGGINLADEYINAYDRF GHWKDSAILIQGEAVWNFTVMFLSLWNYETETDEDYTRFKLPVHEAEAYPSDGFVQPF GDSPLDEEPMGENVYLTLIVQAERYIYINTPYLILNNVMLSALCSAAKRSVDVRIVTP YRGDRWFVHSMTRSNYEFLVESGVKIYEYSPGFIHAKSILIDDVHAVVGTINMDYRSL YLHFECGVYLYNTQSVLAVKEDYLATLTKCQQITLEDCRAVRWYRRLGRTILRIFAPL M" sig_peptide complement(1389178..1389255) /locus_tag="Dhaf_1291" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.602) with cleavage site probability 0.346 at residue 26" gene 1390883..1391335 /locus_tag="Dhaf_1292" /db_xref="GeneID:7258262" CDS 1390883..1391335 /locus_tag="Dhaf_1292" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: fma:FMG_0444 MarR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002457784.1" /db_xref="GI:219667349" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7258262" /translation="MRSMVFENEIWDFLRTITEGMANAFRPIVEEYGLTLMQTRILVE VKDGAPHTIGSLGSIIGLSSGNASSMCKKLEAAGFLRRIRTPEDERFVKLALTRHGED TIYRIEEDLERRCGVFLEYKGEQEYQRFIECMENVKAFMQEMYEFQPK" gene 1391403..1393229 /locus_tag="Dhaf_1293" /db_xref="GeneID:7258263" CDS 1391403..1393229 /locus_tag="Dhaf_1293" /inference="protein motif:TFAM:TIGR01241" /note="KEGG: aoe:Clos_2310 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ATP-dependent metalloprotease FtsH" /protein_id="YP_002457785.1" /db_xref="GI:219667350" /db_xref="InterPro:IPR000642" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR003960" /db_xref="InterPro:IPR005936" /db_xref="InterPro:IPR011546" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7258263" /translation="MNEKPTPKKPLIYYSLIALLILLLLNAFVFPHLLKRQVTQVDYG SFLSYLESGTISEVEVQDNQIAFMTKDSTGKETIFVTGAMADPELVNRLKAAGVDKYS QVIPKENSPLMNILLTWILPMILLFGLWMLLGNLMQRKMGGGMNAMTFGKSNAKIYVQ AQTGKTFADVAGQDEAKEALTEIVDFLHDPSRYAAIGADLPKGALLVGPPGTGKTLLA KAVAGEAKVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKR DGGSFGGGNDEREQTLNQLLSEMDGFDGKKGVVILAATNRPESLDKALLRPGRFDRRI PVELPDLAGREAILRVHGQKVKMDSPIDFKAIARATAGASGAELANIINEGALRAVRC GRSRVNQSDLEESVEVVIAGYQRKGAVISHREKEIIAFHEIGHALVATKQTDSAPVHK ITIIPRTSGALGYTMQVEEDERVLMSKEEAFNKITTFTGGRAAEELIFGTYTSGASND IEQATKIARAMVTRLGMSKNFDMMALETVNNPYLGGDTSLMCSPETAARIDEEILSII KSAHKKAFEILKENIEKLHELARYLLEKETITGEEFMAVLSR" sig_peptide 1391403..1391486 /locus_tag="Dhaf_1293" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.718) with cleavage site probability 0.417 at residue 28" gene 1393364..1394206 /locus_tag="Dhaf_1294" /db_xref="GeneID:7258264" CDS 1393364..1394206 /locus_tag="Dhaf_1294" /inference="protein motif:PFAM:PF01501" /note="PFAM: glycosyl transferase family 8; KEGG: cth:Cthe_1397 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 8" /protein_id="YP_002457786.1" /db_xref="GI:219667351" /db_xref="InterPro:IPR002495" /db_xref="GeneID:7258264" /translation="MNILVTLNSSYVKQLMVMLTSLLDSNPGEQFTVYVAHSAMSKED FARIDQAIDSSRCKVEGIKLSDEGLSKAPITSRYPKEMYYRIFAVNYLPDHLERILYL DPDLVVINPLKELYTIDFQGNFFAAASHVKELLKKLNHVRLNMAEDSTYVNSGVMMMN LSLLRQEQDVHEVYQYIEEYKHRLFLPDQDVLNGVYSDRTLTVDAKIYNLSERYYALY NLNPKYWDAKIDLDWVRSNTAIIHYCGRNKPWKDNYIGDLNVFYKNYEQKVRAKMKDF ETMR" gene 1394253..1395398 /gene="cbiD" /locus_tag="Dhaf_1295" /db_xref="GeneID:7258265" CDS 1394253..1395398 /gene="cbiD" /locus_tag="Dhaf_1295" /inference="protein motif:TFAM:TIGR00312" /note="Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A" /codon_start=1 /transl_table=11 /product="cobalt-precorrin-6A synthase" /protein_id="YP_002457787.1" /db_xref="GI:219667352" /db_xref="InterPro:IPR002748" /db_xref="GeneID:7258265" /translation="MRKKTKDRHSWKTGFTTGSCAAGAAKAACLLLKGLHQGTEVDIP LPQGERLQLPVHRWDRAEDVAWVSIIKNAGDDPDVTHGLEVVARVQLLSQRGEILIRG GRGIGVVTKKGLQIPPGESAINPVPRSMIQAAVREVFPQEEILVVIEVPEGERLALKT LNPRLGIMGGVSILGTTGIVRPMSEEAFKNSILPELDQAVAYGHKAIVLTPGNYGFKV AREQLMVPEEAIIQMSNFVGFLLEEAAYRKIEKVLLLGHIGKLIKVAGGIFHTHTHVA DARMEILVAHAALAGMDQNSLQTIAELPTVEGAAEEIRSKGWGSLLFKLAERASHRAQ DHVHGELQVGTAFTLLNGEIIAWDDPAMEIGKEFWHWPPVEEEFWRK" sig_peptide 1394253..1394336 /gene="cbiD" /locus_tag="Dhaf_1295" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.959 at residue 28" misc_binding 1395434..1395612 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 123.49" /bound_moiety="adenosylcobalamin" gene 1395595..1396962 /locus_tag="Dhaf_1296" /db_xref="GeneID:7258266" CDS 1395595..1396962 /locus_tag="Dhaf_1296" /inference="protein motif:TFAM:TIGR02467" /note="TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Protein of unknown function methylase putative; KEGG: hmo:HM1_2387 precorrin-6y c5,15-methyltransferase (decarboxylating)" /codon_start=1 /transl_table=11 /product="precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit" /protein_id="YP_002457788.1" /db_xref="GI:219667353" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR012818" /db_xref="InterPro:IPR014008" /db_xref="InterPro:IPR016065" /db_xref="GeneID:7258266" /translation="MNIALRPRAMDDVVTISEIPKGRTKEPLRALFCLACFFIELNRG EGDGMIQIVGIGPGTRAWVPQAVEAMVAQSDVLVGGIRALELFPDFQGESYRVTGNLA ETRQTLQKVLQQGKKASVLVSGDPGFYSLLPWLKREFPQEEIQVLPGLSSIQLAFARA GIPWQDAELLSVHGRPLNCLPLHLSRPVGVLTGGENSPRKIAEYYRTYGCNPRISLGN ALTYAEERWLNTDADQLMNSEEDFANAVMILYPEEAEHKPEQSVLSLPRSFGIKDEEF IRGDVPMTKTEIRVQVLAKAGIIPASRVLDVGAGTGSISIEAALLAHRGCVYAVEENP EAQELILKNQEKFRVSNLRLIRGSAPLALQEIPPVDVCIIGGSHGQIREILHQAPLVP GGRAVVTAVTLETLAHGMEALKSLQYEDVDVVSIQAVRWKGIKDIHLAQAQNPVFILS GRKGS" gene 1397060..1397803 /locus_tag="Dhaf_1297" /db_xref="GeneID:7258267" CDS 1397060..1397803 /locus_tag="Dhaf_1297" /inference="protein motif:TFAM:TIGR01467" /note="TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1091 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase" /codon_start=1 /transl_table=11 /product="precorrin-2 C20-methyltransferase" /protein_id="YP_002457789.1" /db_xref="GI:219667354" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR006364" /db_xref="GeneID:7258267" /translation="MKKDKHEDKNTVTTLIGEKAKFYGVGVGPGDPKLITLRAVEILQ AIQVVAIPKSKMERESVAWEIAQSHCPSGVSILELEMPMTADESILQAAWQSAAEKIE AELSQGHSVAFLTLGDPSLYSTYSYLLTILRERLEPDQIETIPGITAMAAAAARVNWP LATGDEPLIVLPGIEGLEEYEHYPNLVLMKVSRNLPEVLNHVQRTGSQAVLATRVGQA GEEIRLLDPEEVLEKVDYLSLVLCRKPQS" gene 1398221..1399006 /locus_tag="Dhaf_1298" /db_xref="GeneID:7258268" CDS 1398221..1399006 /locus_tag="Dhaf_1298" /EC_number="2.1.1.133" /inference="protein motif:TFAM:TIGR01465" /note="KEGG: aoe:Clos_1019 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase" /codon_start=1 /transl_table=11 /product="precorrin-4 C11-methyltransferase" /protein_id="YP_002457790.1" /db_xref="GI:219667355" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR003043" /db_xref="InterPro:IPR006362" /db_xref="GeneID:7258268" /translation="MAENTNSGLGQVLFVGAGPGDPDLITLKGKKALEEAQRVIYAGS LVNPDILQHCREGIALFDSAGLTLEETVAIMAEGVQRGEKVVRLHTGDPSVYGAIQEQ MQCLEEKGIAYGVIPGVSSVFAAAAAVKKEFTLPEVSQTLILTRLAGRTPVPEKEDLA LLAQHQASMAIFLSVQDIGEVVATLRKGYPPHTPVAVVYRASWPDQHILEGTLETIAD QVKEAGIRKHAQILVGDFLRDQGTRSKLYDPEFTHEYRQGRST" gene 1399003..1400142 /locus_tag="Dhaf_1299" /db_xref="GeneID:7258269" CDS 1399003..1400142 /locus_tag="Dhaf_1299" /inference="protein motif:PFAM:PF01890" /note="PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: drm:Dred_2710 cobalamin (vitamin B12) biosynthesis CbiG protein" /codon_start=1 /transl_table=11 /product="cobalamin (vitamin B12) biosynthesis CbiG protein" /protein_id="YP_002457791.1" /db_xref="GI:219667356" /db_xref="InterPro:IPR002750" /db_xref="GeneID:7258269" /translation="MKTAIVVLRDQGLQTACRIIGKWPEEEAVSLYLHRRLQGQEHVQ EREEVKEAPPGLRPHYFDKLNDVLPKLWESSSLLIFIMATGIVVRHIAPFLQGKDRDP AVLVLDEKGEFAISLLSGHLGGANAWAKSVAQWINARPVITTATDVQGLTAPDEYARR FGWSVEPLSGLKEVNSLLLEQGYLKVWTDCLPEEHPLRQDPHYHFLEDDDQEHAQLWI TAKQVSGNEVFGHEVPGPGQLQGKSRPLHLLPRIFGIGIGCRRGVSREQVMEAIAGSL RQVEISPKSIRGLYSIELKADEAGIIEAAQTLGIPFHTFSAQAIQNMNEQRGLRPSEY VKEKIGVDGVCEAASLLGTSQGELVLPKQKWNGVTVAISKAKSMW" gene 1400094..1400855 /locus_tag="Dhaf_1300" /db_xref="GeneID:7258270" CDS 1400094..1400855 /locus_tag="Dhaf_1300" /inference="protein motif:TFAM:TIGR01466" /note="TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: amt:Amet_0076 precorrin-3B C17-methyltransferase" /codon_start=1 /transl_table=11 /product="precorrin-3B C17-methyltransferase" /protein_id="YP_002457792.1" /db_xref="GI:219667357" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR006363" /db_xref="GeneID:7258270" /translation="MERGHGGHQQGKIYVVGIGPGDAEHMTQRAQSVWNEVDVVAGYK TYIDLIRPWLADKKVVATGMRQEIDRCREVVEIALEGQSIALVSSGDAGVYGMAGILI ECLEEKDALDISLEIIPGVSAANAASSLLGAPLMHDFAVISLSDLLTPWEVIQKRVKL AAEGDFVMAIYNPKSKGRQDQIEWVRQAVLDYRDPQTPVGIVREALRGESQVIITTLA EFTQSPIDMLTTVVIGNSHTRVIGPYMVTPRGYIL" gene 1400852..1401637 /locus_tag="Dhaf_1301" /db_xref="GeneID:7258271" CDS 1400852..1401637 /locus_tag="Dhaf_1301" /inference="protein motif:TFAM:TIGR00715" /note="TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: drm:Dred_2708 precorrin-6X reductase" /codon_start=1 /transl_table=11 /product="precorrin-6x reductase" /protein_id="YP_002457793.1" /db_xref="GI:219667358" /db_xref="InterPro:IPR003723" /db_xref="GeneID:7258271" /translation="MRLFVLAGTEDGRELALALQERGHEVLVSTLTEYGAELAERQGL RTCSGALDQDSLMKILQEQAIHALIDATHPYAQNIRNLARCVAGECNLPYFRWERPSG AYPVHPLLYFTATIEGAARLAARLGKRIFLSTGSKNLRDWMESPKLKDCQLYVRVLPT SQVLSQCEEAGLKPYQIIAMQGPFSQRFNEGLWEQLNIDVVITKDSGAVGGTDEKVQA CLQLGIPIIVLERPQETQAGMAAEKDTATIEEFMRKVEEHCEN" gene 1401627..1401995 /locus_tag="Dhaf_1302" /db_xref="GeneID:7258272" CDS 1401627..1401995 /locus_tag="Dhaf_1302" /inference="protein motif:PFAM:PF01903" /note="PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mta:Moth_1096 cobalamin (vitamin B12) biosynthesis CbiX protein" /codon_start=1 /transl_table=11 /product="cobalamin (vitamin B12) biosynthesis CbiX protein" /protein_id="YP_002457794.1" /db_xref="GI:219667359" /db_xref="InterPro:IPR002762" /db_xref="GeneID:7258272" /translation="MKTEFLLLGHGSRRQEANQGLIEVAHKVSKILGEEVTPVFMDHD KPSLPDGVLEKIQEGAKKIIIMPLFLFRGMHVTVDIHEEIREIKEQYPDVEILFANEL GADDVIAQLASLRIKEALGA" gene 1401992..1402630 /locus_tag="Dhaf_1303" /db_xref="GeneID:7258273" CDS 1401992..1402630 /locus_tag="Dhaf_1303" /inference="protein motif:PFAM:PF02570" /note="PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: drm:Dred_2706 precorrin-8X methylmutase CbiC/CobH" /codon_start=1 /transl_table=11 /product="Precorrin-8X methylmutase CbiC/CobH" /protein_id="YP_002457795.1" /db_xref="GI:219667360" /db_xref="InterPro:IPR003722" /db_xref="GeneID:7258273" /translation="MKGFITDPLEIERESMRIIHGYLQQEWTEQELKVVERCIHTSGD PTLESVIRIHPQGIEAGLKALQQGAPVITDVEMVRAGIAKKQLAQLGGVAECFLSDPR VADQAAEWGITRSMAALRLNKERLKGAIVAIGNAPTALLEVLELAQDPETRPALVVGI PVGFVGARESKDLLWDEHQELPSITILGNRGGSPLAATCVNALIYLAVNREI" gene 1402646..1404190 /locus_tag="Dhaf_1304" /db_xref="GeneID:7258274" CDS 1402646..1404190 /locus_tag="Dhaf_1304" /inference="protein motif:TFAM:TIGR00313" /note="TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mta:Moth_1098 adenosylcobyric acid synthase (glutamine-hydrolysing)" /codon_start=1 /transl_table=11 /product="cobyric acid synthase CobQ" /protein_id="YP_002457796.1" /db_xref="GI:219667361" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR004459" /db_xref="InterPro:IPR011698" /db_xref="GeneID:7258274" /translation="MSGKKAAARLMIQGTSSNVGKSVLAAAFCRIFYQEGYHVAPFKA QNMALNSFITRSGGEMGRAQVVQAQAAGLEPDVRMNPVLLKPTGHTGSQVIVLGKAQG TLSALKYHGDYQRKTWPIVEEALHELLEEHEIVVIEGAGSPAEVNLKQNDIVNMRVAK EAQAPVLLVADIDRGGALASVVGTLELLEPEERQLVQGIVMNKFRGDIKLLQPALDFL EERTGIPVVGVVPFYDQFKIPEEDSVVLEEQNTSKRDQGKSRDEALDVAVIRLPYLSN FTDFDPFEDEPDVILRYVREPSELGEPDCVIIPGSKNTLSDLRFLWESGLGEKIIKFW QEDVPIIGICGGYQMLGRIVRDPLGTESDLKEIAGLGILPMETEFELDKHTVQSRGKV VGGELFLARCQGTEITGYEIHMGRSQGEGHSLFEIEAQETAYGDGMSAGSAVGTYLHG IFDNDPLRTALLEWLWERRGGTRPVGETMSQAAIREQSFNELADWVRNSMDMEKIRAM MGLHKG" gene 1404196..1405161 /locus_tag="Dhaf_1305" /db_xref="GeneID:7258275" CDS 1404196..1405161 /locus_tag="Dhaf_1305" /inference="protein motif:TFAM:TIGR00380" /note="TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: bha:BH1588 cobalamin biosynthesis protein" /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein CobD" /protein_id="YP_002457797.1" /db_xref="GI:219667362" /db_xref="InterPro:IPR004485" /db_xref="GeneID:7258275" /translation="MILMLHPLAFGLGFLWDQAVGDPPKWPHPVIYMGKAIAWYEQRF NQGSPQLRRLKGALLTLALVIGSYALTAGVIEGAQEISAALGLIIEVLLLGSTLAGKS LLEAGNLVLTPLREGNLDEARHKLGWFVSRDTAQLPEGEIVRGTVETLAENFVDGILS PLFYMLIGGAPLAMAFKAVSTLDSMIGYRNERYEDFGWFAARTDDWANYLPARLSVGI LLLAGWFYKLPVGHALTIWRRDAKTHPSPNGGNPESVVAGLLEIQLGGKNIYHGQVHH RAEMGDPLHELTWRDIERCRKLVRLGTWISFALILSGIVLVNSIM" gene 1405827..1407293 /locus_tag="Dhaf_1306" /db_xref="GeneID:7258276" CDS 1405827..1407293 /locus_tag="Dhaf_1306" /inference="protein motif:TFAM:TIGR00379" /note="TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pth:PTH_0959 cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="cobyrinic acid a,c-diamide synthase" /protein_id="YP_002457798.1" /db_xref="GI:219667363" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR004484" /db_xref="InterPro:IPR011698" /db_xref="GeneID:7258276" /translation="MPHSLPPRILIAGTHSGVGKTTIATGIMAALTRRGLPVQPYKVG PDYIDPSYHTLATGRSSRNLDRWMLREELIPIFARTSQDCWAVIEGVMGLFDGVSGTK GYGSSADIAKLLDAPVVLILDAGNLSRSAAAVVHGFCTFDPEVKIAGVILNRVKSPAQ ESLLREALSEIQVPILGVLPKEEGIRLPERHLGLVPSQEQAFQESFFDELISVVNRTI DLEQIQRIMQQRVIQEAPPEKQSVAELTCPKGTASWGGEPILHEGLSEEAAAGNRNYH PLRLGVARDEAFSFYYQDALDCAENLGFVLVPFSPLHDSSLPAGLDGLFFGGGFPELH LERLSQNQSFLESLRQFSRSGKPIYGECGGYMYLGTQVTDFEGRTYPMAGLIPIAAEM APKLQGMGYRQGIFRRDNFLSKAGNMVYGHEFHYSKVNYLSCDDEAFPAFELVKGERS LRMDGYARDNIVASYLHINFAGQPELLQHWAEHIRQGA" gene 1407296..1407856 /locus_tag="Dhaf_1307" /db_xref="GeneID:7258277" CDS 1407296..1407856 /locus_tag="Dhaf_1307" /inference="protein motif:PFAM:PF02572" /note="PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: hmo:HM1_2400 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP" /codon_start=1 /transl_table=11 /product="ATP:corrinoid adenosyltransferase BtuR/CobO/CobP" /protein_id="YP_002457799.1" /db_xref="GI:219667364" /db_xref="InterPro:IPR003724" /db_xref="GeneID:7258277" /translation="MIRVYTGKGKGKTTSALGEALVAQSQGIKVLMVQFLKGSTYMGE LYTMGRLGIPLIQFGVGCRWSGMIRTGLRHCSGCGECFRQNRDPNVALPLVAQGVEFL RTQIEEGDWGLIILDEVSHALNKGFLEMGILQELIGLKPEGLDWILTGRDMPEELLPF VEHWWELNPIKHPLQAGIRSRRGIEY" gene 1407856..1408845 /locus_tag="Dhaf_1308" /db_xref="GeneID:7258278" CDS 1407856..1408845 /locus_tag="Dhaf_1308" /inference="protein motif:PFAM:PF00288" /note="PFAM: GHMP kinase; KEGG: drm:Dred_2702 GHMP kinase" /codon_start=1 /transl_table=11 /product="GHMP kinase" /protein_id="YP_002457800.1" /db_xref="GI:219667365" /db_xref="InterPro:IPR006204" /db_xref="GeneID:7258278" /translation="MKGLGWAKCPGTCGEWVQGAKDGTPFLVGCPINRFVEAKAEILF SESVARDNSGHQQELKDWIWQLPEGKEKTRQALERFARIQNLPPLTGKIHMQSQLLIG KGMASSTADMTAAVSAVAQALAIPWQSEEQARLALAIEPSDPIMFPGVTELAHGDGTY IKSLGPKISAQLLMLDGGGFLDTLAFNARRDLPGHYRKYEPKIKNALALFYEGMAQRD LGKIAQAGTISARCNQDINPKPFFEEFLSWTLGKGGLGVITAHSGTLLAGIFPPDLST TEKKNLERESRIQFRPVIVEWVETYDGGTEGGVMNAWRKSVGRLGTVWETELY" gene 1408787..1409923 /locus_tag="Dhaf_1309" /db_xref="GeneID:7258279" CDS 1408787..1409923 /locus_tag="Dhaf_1309" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: pth:PTH_1314 histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_002457801.1" /db_xref="GI:219667366" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7258279" /translation="MHGGNLLDASAQYGRQNFIDLSANINPFGPPQGVWEALQKGVAN IIHYPDPNYRRLRGKMAEYYALNAEEILLGNGAGELIFLILHGLRPRKVLIPQPAFSE YERAALACGAEVNKLILGVKGWGELSFQNEESHREWEQALAENELVFINSPHNPTGSA LSKQQFEVILNLALKHQTWVVLDESFVDFLEDESRWSGKGYLRRYPNLLVLYSLTKFY AIPGLRLGAVFGAAKLLGRLQDQRDPWAVNSLAEEAGLAALADAEYGKRVRRLLQESK ESFYRSFAEGRKGKKYWGLRLYSSKVNFALIQVLEAEDSGTDRDDAGKGKKNLIQELG KQGILVRDCGNFAGLEGNYIRVAIKDQESMNSLLAGFKMLDNLC" gene 1410187..1411575 /locus_tag="Dhaf_1310" /db_xref="GeneID:7258280" CDS 1410187..1411575 /locus_tag="Dhaf_1310" /inference="protein motif:PFAM:PF01654" /note="PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: drm:Dred_1639 cytochrome bd ubiquinol oxidase, subunit I" /codon_start=1 /transl_table=11 /product="cytochrome bd ubiquinol oxidase subunit I" /protein_id="YP_002457802.1" /db_xref="GI:219667367" /db_xref="InterPro:IPR002585" /db_xref="GeneID:7258280" /translation="MTELILSRLQFAVTTSYHFLFVPLTLGLSVLVALMETWYVRTGD ETYKKMAKFWGKLFLINFAMGVVTGLVQEFQFGMNWSEYSRFMGDIFGAPLAIEALLA FFIESTFLGVWIFGWDKLSKKVHCMSIWLVAIASNLSALWILIANSFMQEPVGYVLRN GRAEMVDFLAVVTNQHVFYQFPHTVLSGFTTGAFFVLGISAYHLAKKKHVDVFMRSAK FALIFGIISIFGVLGIGHAQGMHLVESQPMKMAAAEAHWETESPAGFNVFAIVDKENN TNSFEIKVPGVLSFMSYGTFDAEVKGMNELQAEAVQKYGEGNYIPPVTSLFWSFRIMV GVGSLLVLIALLGAFLYKTKRFENTMWFLKLLPWMIPLPYIANLTGWFLAEQGRQPWI VYGLQKTADGLSTSVPAAYIWTSLIGFTLLYGILAIVDVYLILKFVKRGPVEAEDEDS STDVAKGASLWT" gene 1411566..1412570 /locus_tag="Dhaf_1311" /db_xref="GeneID:7258281" CDS 1411566..1412570 /locus_tag="Dhaf_1311" /EC_number="3.1.3.1" /inference="protein motif:TFAM:TIGR00203" /note="KEGG: drm:Dred_1640 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase, subunit II" /protein_id="YP_002457803.1" /db_xref="GI:219667368" /db_xref="InterPro:IPR003317" /db_xref="GeneID:7258281" /translation="MDLNILWFILISVLFIGFFFLEGFDYGVGILLPFMGKNDTERRI VINTIGPVWDGNEVWLITAGGAIFAAFPNWYATLFSGFYLALFFILVALILRGVAFEF RSSDRSPRWRSAWDGGIFVGSLLSAILWGVAVTNILRGVPINGEMQYVGTFFDLLSPY TLLGGVTTLLLFTVHGALYLTLKTEGEMVRRAWGIAKAVSVAALVVLVLLAAMTYLQT DLFLSTPATLGILVCALAMILTVLFTYKKAAGKAFIASSLTIASLVLSVFLGLFPRVM VSSLNPEWSLNIYNASSSPYTLKIMTIVALTLVPIVLAYQIWTYWVFRKRVTAKDVHY" gene 1412678..1414447 /locus_tag="Dhaf_1312" /db_xref="GeneID:7258282" CDS 1412678..1414447 /locus_tag="Dhaf_1312" /inference="protein motif:TFAM:TIGR02857" /note="KEGG: drm:Dred_1641 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD" /protein_id="YP_002457804.1" /db_xref="GI:219667369" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR014216" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258282" /translation="MLDKRLMREGKHVKRYLLGTIALGLGIALLAIIQAWLLSQVIAQ VFLEDAPFGQVQGYLLAILGVIGVRGIFQYCSEVTAREAAIRVKERVRVRFLHKILAL GPVYARGERGGELLNTAVEGIEALDDYFARYVPQLILAVLVPMLTLAFVLPKDFQSAL VLIITGPLIPFFMILIGKLAEKKSLRQWQSLSRMSAHFLDMLQGLTTLKLFGRSKDQA TVISRVSEAFRKSTMSVMKVAFLSAFVLEFMGMISTAIIAVTLGLRLINGTVPYAEAL FILILAPEFYLPLRTLGLSFHARLSGSNAAQRIFEVLELENQLESELNGVELGGGAEE PGHLFRGEQGAPWLTFKQVDLCYEQEGERVLKDINFTLRLGERVALIGPSGAGKSSLL QILLRFVEPTQGKVLINDTVLNRIPAAAWREMISYVPQKPYLFAGSIMENIRFGNPGA AWADVVRAAQLAMAHEFISELPQGYDTLVGEGGARLSGGQAQRIAISRAFLKDAPLLL LDEVTSGLDNENEKDLLIALEGLCQDRTVIFTTHRMRTTIEADRILVLDKGRIIEEGS PQTLLNNQGLYTHFVSTYGREEE" sig_peptide 1412678..1412809 /locus_tag="Dhaf_1312" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.799) with cleavage site probability 0.478 at residue 44" gene 1414444..1416165 /locus_tag="Dhaf_1313" /db_xref="GeneID:7258283" CDS 1414444..1416165 /locus_tag="Dhaf_1313" /inference="protein motif:TFAM:TIGR02868" /note="KEGG: drm:Dred_1642 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC" /protein_id="YP_002457805.1" /db_xref="GI:219667370" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR014223" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258283" /translation="MKNLRWIIKEILPLWPRVCLALLLSALTVTSHIGLMATSSYLLA RAALQPPIMDLMITIVGVRFFGISRAVFRYFERLVSHDVTFRVLSRMRMIVYKGIEPL APARLKELRSGDLLSRIVGDVEVQQNLFLRVLAPPLVAVLVLLCYGGFLAYFNQGFTM ILAAFFLAAGVALPLLVRALGKGIGQMKIQAKARMYTFILDSLQGMPEMLAFGQTGAV FQRIQEAQSELSHSERRMAKVTGTANALMGMSSHLGMLAVLVLGIILVEGRQIDGVLL GMLALGVLSSFEAVATLPAGQQYLEENEAAGRRLKHLIDEGRNLEKEKGRLDAPGLEP ELAFENVRFRYEPNGPWVLDNISVKIPGGRRIGIVGQSGAGKSTLVNLLVRFWEPAAG EIRLGGVNIKELTPQVVRENMGIVSQKPYLFHATIKENLLLAKPEATNEELYEAARRA RIHDFILSLPQGYDCLIGEEGMKLSGGQQQRLAIARVLLKDAPILILDEATSGLDPVT ERELKEELFALAENRTLIVITHHLELVKDMDEILVLGKGRILEQGKHEELMRKEGQYR RLWEKGY" sig_peptide 1414444..1414578 /locus_tag="Dhaf_1313" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.495 at residue 45" gene 1416379..1417788 /locus_tag="Dhaf_1314" /db_xref="GeneID:7258284" CDS 1416379..1417788 /locus_tag="Dhaf_1314" /inference="protein motif:PFAM:PF03600" /note="PFAM: Citrate transporter; KEGG: sfu:Sfum_1157 hypothetical protein" /codon_start=1 /transl_table=11 /product="Citrate transporter" /protein_id="YP_002457806.1" /db_xref="GI:219667371" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7258284" /translation="MEHSLGTLLPLYSVIPFVGMLLSIALGPVLFPKFWHHHFGKVSA AWAALLAVPLIVVYGKQGVDELLHLLIADYIPFIILIGSLFTVGGGILVRTSLKGTTW VNAGFLTIGAIVASWMGTTGAAMLLIRPFLRVNKDRKYKAFMVVFFIFMVANVGGSLT PLGDPPLFLGFLHGVPFFWTLRLITPMAVVLAGLLLMYIAFDKYYLAKEQKEAGLALA SSAGDRAVAATQNIANEGSAPEKKLEILGAQNFILLAAIIGVILFSGYVKMSEVSILG VHLGWQDVIRNLVLVAIMVISMKITAKTVREENEYSWGPILEIVYLFFGIFVTMAPAL AILKAGESGALSFITAAVKEPAQYFWITGALSSFLDNAPTYLTFFSTALGQFYPGVAE GPAVAQFLVEQPLYLLAISAGSVFFGAVTYIGNAPNFMVRSIAEESGVKMPSFFGYMV YSVCILLPLFGIVTWLFFL" gene complement(1417954..1418505) /locus_tag="Dhaf_1315" /db_xref="GeneID:7258285" CDS complement(1417954..1418505) /locus_tag="Dhaf_1315" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457807.1" /db_xref="GI:219667372" /db_xref="GeneID:7258285" /translation="MKRSIWVFSVLLATIFLLGHWIPGFSAHSTLNSSGQPALASAFT DPVTPTERKEMETLALDFTKRYYTYTLDNYLEEGLKLLPLLTQDYQPIYMGSLEKSFS AAEAVNARSTVESALVLGLEKTASDSSLIKMQFKAKVLTHDVVTLNRYSVVLDLKKED DAWLINDIVEEEPVAFSNLQDLL" sig_peptide complement(1417954..1418043) /locus_tag="Dhaf_1315" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.366 at residue 30" gene 1418747..1420975 /locus_tag="Dhaf_1316" /db_xref="GeneID:7258286" CDS 1418747..1420975 /locus_tag="Dhaf_1316" /inference="protein motif:PFAM:PF03413" /note="PFAM: Propeptide PepSY amd peptidase M4; KEGG: hmo:HM1_2567 hypothetical protein" /codon_start=1 /transl_table=11 /product="Propeptide PepSY amd peptidase M4" /protein_id="YP_002457808.1" /db_xref="GI:219667373" /db_xref="InterPro:IPR005075" /db_xref="GeneID:7258286" /translation="MNKKKMHKLAIPMAVALLVQGALPASVMAAAEVSAKTISAVETI AAPAQVKVSLEDAIKLVKNNFTIPAAYTKFTSGYNNYNERETWSLNWNSTDDAGGSFN AQVDVSTGEIIHMNSWNPASSSSQTSVPKYSYAEAKDIAQGLVNKILGDRLNQMELVP ENTQITPVIDYGYTTYSVQWKRVANGVAFPSNGVSVQVNAYDGTITSYSLNWSKESIP DPKDVISADKAREAFVKNNLLQLQYFLNYGIRPLDSQEKDAKKDALLVYKLSNQSFSG MIDAQTGEPLKLNSGEWLNSDAVMEAGGGMGGMAKSSENALAPAEQKEVDDASKLLTK EQAIESAKKWVEIPDSLTLRGANLGLEGGLSQKRVWSFDWSQEESTDGYNYVYARVDA ATGEVLGFSAYSPNPQPKGPDAIDRTAAKAIADAFIKKIQPDRVQQVEYLEVMDNGQK YPEDQPNHDFSYERVVNGVHVPGNGFSVSVERNTQKVVSYNMDFANVNFPDIAQAMDQ KQGEDTFLKKRPLELKYVQINKNGQLSDIRLVYQPKMDNSFAVSNIMDAKTGEFLDWQ GKPIKEQPRPYNFGDISGSFAEEEIRLLGQAGAFGEYGDQFRPDEHVTVKSLLSSMLI AKNGVWSYQGLSDEELLKQVKELGWVKENLSLNDQVSREFQAKLVVRMLQLEKIAQLE ELFQAPYEDADTFSDGSLGYIALAKGLGVMNIEGNKFESTKKMTRAEAAYALVKALQS NR" sig_peptide 1418747..1418836 /locus_tag="Dhaf_1316" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.947 at residue 30" gene 1421232..1422197 /locus_tag="Dhaf_1317" /db_xref="GeneID:7258287" CDS 1421232..1422197 /locus_tag="Dhaf_1317" /inference="similar to AA sequence:KEGG:Cbei_3061" /note="KEGG: cbe:Cbei_3061 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457809.1" /db_xref="GI:219667374" /db_xref="GeneID:7258287" /translation="MSTLPMTGDFIRESLELHLFWARIIKEHLIFLESGFMCKDADWM QEADALKCSFEEILHEANCLADGKVGIEVMKSGELFTNKTLKAEQKTQELTCIPINSQ LTVETMSLHPYMGVGMGMVPCEQEIAEQVYALNEKALACACNVYEFTDRALKAILQCC ITSHNFPSLYEHQMKETEMYMKQIRKLQNHQYTDPTCHMVEMQMFWDHIMKEHAEVIS HLLDPKEKAMITRADHFAQAYEQLLNQLGNGTVPDQSFRRITSETIRVTGEFKDFKAA GTDAILCCQLRSLILPLLADHVLREAIHYLRILGLPLPEFKGGKG" gene 1422383..1423258 /locus_tag="Dhaf_1318" /db_xref="GeneID:7258288" CDS 1422383..1423258 /locus_tag="Dhaf_1318" /inference="protein motif:PFAM:PF03446" /note="PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bsu:BSU13960 hypothetical protein" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydrogenase NAD-binding" /protein_id="YP_002457810.1" /db_xref="GI:219667375" /db_xref="InterPro:IPR004455" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR006183" /db_xref="GeneID:7258288" /translation="MSKSNLKIGFVGTGVMGRSMVKNLLKDGYSVAVYNRTKSSAEEL FALGVQWVDSVAGLARLSDVVITMVGYPKDVEEVYLSEEGLIPNAKPGSVLIDMTTSS PLLAQRIALAGKAGGIDVLDAPVSGGDVGAQNGTLVIMVGGEEGVFDKVKPIFEAMGK NIILQGPAGAGQYTKMANQITVAGGMIGVCEAIAYAQKAGLDPSRVLDSIAGGAAGSW SLSNLGPRMIAGNFEPGFYVKHFIKDMNIALESAKEMGLMTPGLELAKSLYEQLAAEG EENSGTHALYKLYMK" gene 1423352..1423849 /locus_tag="Dhaf_1319" /db_xref="GeneID:7258289" CDS 1423352..1423849 /locus_tag="Dhaf_1319" /inference="protein motif:PFAM:PF04024" /note="PFAM: PspC domain protein; KEGG: tte:TTE0864 putative stress-responsive transcriptional regulator" /codon_start=1 /transl_table=11 /product="phage shock protein C, PspC" /protein_id="YP_002457811.1" /db_xref="GI:219667376" /db_xref="InterPro:IPR007168" /db_xref="GeneID:7258289" /translation="MTNRLYRSSREKMIGGVCGGLAEYFDVDVTLVRLVALITLLMGG AGIFLYIAALFVVPGDQSEGPLASGGQRGHVEDIVDEVVQNVKNTARDFGIDSFANST SYSGSSYSSNKRYSQSGRTAGLILIILGIFLLVNQWFPVWESISKMWPLVLIMIGAAL IWKRV" gene complement(1423846..1424403) /locus_tag="Dhaf_1320" /db_xref="GeneID:7258290" CDS complement(1423846..1424403) /locus_tag="Dhaf_1320" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: Nup214; nucleoporin 214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457812.1" /db_xref="GI:219667377" /db_xref="GeneID:7258290" /translation="MHLFSPAKPQVNSLDTPQANSRSFQYNINNLPPSPLSSSSPSST PPQTLERPSAQPPANSILQSNLNPVQANLANSQPVANSTSTPNLTPKPAAPAPVDVNS ELKSLLQKQGVNFLQSFGPAFAREFGAPLARNIAPQLADRLGPPLAEKVALPLIQKVG FPLAKRVGLPLAKKLGGLVLKRIGL" gene 1424838..1427087 /locus_tag="Dhaf_1321" /db_xref="GeneID:7258291" CDS 1424838..1427087 /locus_tag="Dhaf_1321" /inference="protein motif:PFAM:PF04122" /note="PFAM: putative cell wall binding repeat 2-containing protein; KEGG: ctc:CTC01364 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative cell wall binding repeat 2-containing protein" /protein_id="YP_002457813.1" /db_xref="GI:219667378" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7258291" /translation="MKKTRARVVSSVIVAAMVLGTALPAAVLADTQVPAESKVSLNRL HGENRFETAAKVATEGWETSKAAILASGKQENLVDALTAAPFANSIDAPILLTNGADI PEATIEALKTLKVEEIYTVSGAIKKDALEKIFKENNLEIVIKEELGGKDRFETAKNIA SHLDDVEGIMVTTAYKYADALSVASIAAAKNIPILLADQDGLPEIEAAYLDEIKDQVK ATYVLGGEILISEEVYEELPGTDGESKLRIFGDDRFDTNLEVLKTFTDLEYSKVYVGN GYDEHLVDALVVSALAAKTNSPIVLAQKELSKKAEDLLLPKLGEKSIVAVGGTTAVTD KALTFNHVRPQDFAVMQASGVNGYNVGLQIVDGSARDLASVEVTLYRGETVLAKNTSM NKLFNSYPTATQLSSPFNIDGNFSADGYWSYGKWNGSVLDVPTKAVIKVTYLDGRVYE VVNTKLAGNPEDLNQEALNHVKAEDFGVMQASGVNGYNVGFSLVDKLPVDLQSIEVSL VKVETIKDEDGEEQQIKETVLATNTATRAKNAKLFELTGQQLSSPFNIDGSFENDGYW TYGDFNGTVEDVPTKAIITIQYQDGRKFTVQNTELTGDAKLLAAPAIVSGLAEELTVG ETVDFAVTTAPNSFVAEPAAATTKVRVKITLTQGKKENMVLQYLENDGTYQALPLNAE NSAFYGPETGFPFLNAASQFKVTFSEAGTYKYNLEVVTVAEEGQQSEVLASTKGEVVV TKAPAEGNE" sig_peptide 1424838..1424927 /locus_tag="Dhaf_1321" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 30" gene complement(1427218..1428579) /locus_tag="Dhaf_1322" /db_xref="GeneID:7258292" CDS complement(1427218..1428579) /locus_tag="Dhaf_1322" /inference="protein motif:PFAM:PF01645" /note="PFAM: ferredoxin-dependent glutamate synthase; KEGG: sth:STH930 glutamate synthetase" /codon_start=1 /transl_table=11 /product="ferredoxin-dependent glutamate synthase" /protein_id="YP_002457814.1" /db_xref="GI:219667379" /db_xref="InterPro:IPR002932" /db_xref="GeneID:7258292" /translation="MINELMLRLMNPLTDGMLKNMLTESYPNNPMVMTTTFEKLTLRA VIEAGIRAETGKALTRPMGSPLRLSPWEQLLLNPRQLFELPTPDDTTIDTKVVIGPQA QKPLKLDTPILITGMSYGGSLNLPMKIALAKGASTAGTATNTGESAVSEEEREAADFL IGQYNRGGWLNSPEQLGLVDAIEVQLGQGAWGGAVSSSVKEEDMDEHLRVLWQIDEGG STGKSSRLPEVNSPEDLVKLIKKLKKEYSVPVGIKIAATHFMERELEVIAKTEADFIC IDGQEGGTAASSPTLEDDMGLPTLFGLGRTINWLKGQNLREQFTVIAAGGFRTPGEIL KALALGADAVYIGSIAIIAALQNQITKALPQHPAHQLALYNGSLAEEFDIEEGSRCLA NFLLSCQEELKMALQAMGKKAIQELGREDLVCLDPELARNLQIGYAGTPAANYWGSPL AAR" gene complement(1428719..1429099) /locus_tag="Dhaf_1323" /db_xref="GeneID:7258293" CDS complement(1428719..1429099) /locus_tag="Dhaf_1323" /inference="protein motif:TFAM:TIGR00004" /note="TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cbe:Cbei_1979 putative endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="YP_002457815.1" /db_xref="GI:219667380" /db_xref="InterPro:IPR006056" /db_xref="InterPro:IPR006175" /db_xref="GeneID:7258293" /translation="MSINVLHTDKAPAAIGPYSQGIKAGNLVFTSGQLPLNPVTGELE TDIRKATHQSLENVRNILESAGTSLAKVVKVVVFLRDMNDFAAMNEIYGTFFTTNPPA RSAVQVARLPKDAIIEIEAIALAD" gene complement(1429302..1430690) /gene="tnaA" /locus_tag="Dhaf_1324" /db_xref="GeneID:7258294" CDS complement(1429302..1430690) /gene="tnaA" /locus_tag="Dhaf_1324" /EC_number="4.1.99.1" /inference="protein motif:PRIAM:4.1.99.1" /note="tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan" /codon_start=1 /transl_table=11 /product="tryptophanase" /protein_id="YP_002457816.1" /db_xref="GI:219667381" /db_xref="InterPro:IPR001597" /db_xref="GeneID:7258294" /translation="MAIKYVPEPFRIKVVEPLRMLTQEEREEKIAKANYNLFNLKGED CYIDLLTDSGTNAMSQEQWAGVMRGDEAYAGASSYFKLMEAGKDIFGFGYIQPVHQGR AAEKVVFPLLLSEGKFAISNMFFDTTRAHVILSGARPIDCVVEEAKDPSKRAPFKGNM DVAKMEEVIKEKGPENIGLVVMTITNNSAGGQPVSMKNLREVSALAKKYGIPMCIDAA RYAENAHFIKRDEPEYKDVSIKDIVREMFSYGELFTMSAKKDTIVNMGGLLGVKDADS PLVLKIKANCISYEGFFTYGGLSGRDMEALAIGLYEGIDENYLRYRIGQMEYLAARLD DAGIAYQSPVGGHGVFVDAAAMFPHIPYNEFPGQVLCVELYKEAGIRTCDIGSYMLGN DPDTGEQLKADFEFSRLAIPRRVYTQAHLDIMADALIAIKERAHTIKRGYKITWEPPI LRHFQASLAPIE" gene complement(1430820..1432178) /locus_tag="Dhaf_1325" /db_xref="GeneID:7258295" CDS complement(1430820..1432178) /locus_tag="Dhaf_1325" /inference="protein motif:PFAM:PF00324" /note="PFAM: amino acid permease-associated region; KEGG: lsp:Bsph_0500 hypothetical protein" /codon_start=1 /transl_table=11 /product="amino acid permease-associated region" /protein_id="YP_002457817.1" /db_xref="GI:219667382" /db_xref="InterPro:IPR004841" /db_xref="GeneID:7258295" /translation="MSNQENGMHRGLKNRHIQMIALGGAIGTGLFYGSAATIELAGPA ITFSYLIGGLVIFFIMRMLGEMAVDEPVSGSFSHFAYKYWGEFPGFLSGWNYWFNYIV VSMAELTAVGIYINFWFPDIPHWLTALVCLVLVTLLNLISVGTFGEFEFWFAIVKVVA IIGMIVFGLFLIFSGINGEATGFDNLWIHGGFIPNGMIGILFSLVPVMFSFGGIELIG ITAGEADNPQKSIPKAINQVMWRILIFYVGALSVLMVLYPWNQVGADGSPFVMIFSKI GIPAAATLLNIVVLTAALSVYNSGVYSNGRMLYSLAMQGNAPKLFAKLNKRGIPVAGV LVSSGITLVGVILNFLLPGKIFTYLMAVAIIAAVITWTTIIIVNLKFRKAKIAQGEGD ALHFKTPLHPYTNYFCAAFLVMIVILMAFTESMKMAVLVLPIWLLILWISFKIKKSRE SK" gene complement(1432426..1434048) /locus_tag="Dhaf_1326" /db_xref="GeneID:7258296" CDS complement(1432426..1434048) /locus_tag="Dhaf_1326" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: drm:Dred_0663 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="putative sigma54 specific transcriptional regulator" /protein_id="YP_002457818.1" /db_xref="GI:219667383" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7258296" /translation="MESPEFIVRIDFVDRPGLGYDIFQRFEDHNADKIVMEVSHGQQM MIKFRSPDQEGSETLIRDLLTVQGVVSVTLVDYMPYERREQELKTILDLVSEGIIAVN TNHKVTHINEVAAQIFHTTPEEALNQDAELLFEADAPIFETLKTGIPYSLKERKIRKN QKLIHFLTSGVPILNKRGQIIGGVMTIKDFRQVEELLSKVERKPQSINFDSIIYESRR MRDLIETAKTVARGTSTILLRGESGTGKELFAKAIHAESPRSRQAFIPINCAALPDTL LESELFGYEEGSFTGATKGGKKGLFEQAHGGTLFLDEIGEITPQVQVRLLRVLQEGTI RRIGGSKEIPVDVRIIAATHRNLEELIDKGQFREDLYYRLNVIPLHIPSLRERPEDIP LIAQVLTRKIARKLGKSEVHLTKESADLLRAQKWPGNVRQLENLLERIINLNSNSEIK PDSFYEWGDLTPALPVSESENTAHQLIIPFGEPWPPLKDIVAQVERQVLLKVLAEHPS SRKAGKILGVSNTTILNKMNSYGLGKMDEPEG" gene complement(1434197..1436290) /locus_tag="Dhaf_1327" /db_xref="GeneID:7258297" CDS complement(1434197..1436290) /locus_tag="Dhaf_1327" /inference="protein motif:PFAM:PF00120" /note="PFAM: glutamine synthetase catalytic region; KEGG: cth:Cthe_0863 L-glutamine synthetase" /codon_start=1 /transl_table=11 /product="glutamine synthetase catalytic region" /protein_id="YP_002457819.1" /db_xref="GI:219667384" /db_xref="InterPro:IPR008146" /db_xref="GeneID:7258297" /translation="MDFFGKNVFNDAVMRERLPKNTYKALHKTIDEGLPLQLEVAEVV ANAMKDWAIENGATHYTHWFQPMTGFTAEKHDSFISPTSDGKVIMEFSGKELIKGEPD ASSFPNGGIRSTFEARGYTAWDCTSPAFLREDAGKVILCIPTAFCSYTGEALDKKTPL LRSMETISKQALRILRLFGNTTAKRVTPTVGAEQEYFLIEKKYHQKRLDLMLTGRTLF GVLPPKGQEMEDHYFGIINERVTAFMQEVNIELWKLGVLAKTQHKEAAPGQYEIAPIF TSTNIATDHNQIIMDTLHKVANRHGLACLLHEKPFAGVNGSGKHNNWSLSTDEGVNLL EPGKTPHENAQFLTFICAVIKAVDEYADLLRASAANSGNDHRLGANEAPPAIISIFLG DELSDIIEQLKNGKPNSSKQGGELTIGVSTLPSLPKDSTDRNRTSPFAFTGNKFEFRM VPSSLSIAGPNVVINTIVAEVLSQMADRLEKAEDFHGELQAILQEIAIHHSRVVFDGN GYSEEWVKEAARRGLPNLSSTVEAISALISEKTIELFKHHGVFSATELHSRYEIYLEQ YSKTINIEALTMVDVAKRQILPAVMRYSTELAHSINTIRTADPEAEVLAQRSLLNEIS PLLKELSFKTKALQDATCAAKQLHGDAYKQGIYYRDVVFKAMNELRQTADQLEVLVDY DMWPLPSYTKMLFRL" gene 1436620..1438596 /locus_tag="Dhaf_1328" /db_xref="GeneID:7258298" CDS 1436620..1438596 /locus_tag="Dhaf_1328" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_4638 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_002457820.1" /db_xref="GI:219667385" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004010" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR006162" /db_xref="GeneID:7258298" /translation="MVFSIRQKITAVILFAALIPTALLGFFSYKGASNALENELKNTA EQSMQRIQDSTTLYLEGYEQNLKRLGMEDRILIAALQGESEEALQSFQIYKESNPDIL NIYLGTKSGEMIVYPAAELPPGFDPTATDWYRQAAGSGQIIWTEPYVDTATKRLVVSA ARPVLDPSTKELTGVVGVDIALDTLSALVGDMKIGRQGYIFLLDQSGKIMTHPDPALI GEEIPVEELKKAVAQEQGIVDYTYGGEEQFSVIAAYPKTQWKFVGVLGYNEINKAVSQ ILRNTLTYCVIFAALAIVFGILATRGFTKALKALFAYSEKIGSGDFTVRARALSRDET GALTNTLNQMVIQLAGLIGNIKHVAEEMNTSAEKLAASAEETMASSEEINATAAQIAG GASDQAAQAEKGTRMVTELATKIQTLGANSVEMVNSSMDAKQANERGLQSVEHLRVKT EDSSLAVDQISEVIRNLDGKSQAIGSILAAITNIAEQTNLLALNASIEAARAGEAGRG FSVVADEIRKLAEQSAQSVQGIEGIVEDIQRESYHAVGVMKEVKNHSQATVQSVADVS QSFAEISQAMAAIREKIAHTTALIQEMTMDSNQVVDVIQNISAVTEETAAASEEVSAS MEQTASAFSNVVKTAEELEQLAGKLSLEIAQFKI" sig_peptide 1436620..1436727 /locus_tag="Dhaf_1328" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.420 at residue 36" gene 1438742..1439572 /locus_tag="Dhaf_1329" /db_xref="GeneID:7258299" CDS 1438742..1439572 /locus_tag="Dhaf_1329" /EC_number="1.11.1.6" /inference="protein motif:PRIAM:1.11.1.6" /note="PFAM: manganese containing catalase; KEGG: pae:PA2185 non-heme catalase KatN" /codon_start=1 /transl_table=11 /product="Catalase" /protein_id="YP_002457821.1" /db_xref="GI:219667386" /db_xref="InterPro:IPR007760" /db_xref="GeneID:7258299" /translation="MFKHIKDMEYTVRVDRPDPRFANLLLEQFGGPHGELKAAMQYFS QAVGCNDPKLRDMLQDIAAEELSHFEMVGECIAMLLGPTDNVSRDFPAIHMALLPAGP IITNSMGAPWTAAYIETTGDLYTDLASNSSAELRAKLIYERLLQQTDDAGVKDMIRFL LSREESHNFSFLQALETLKGTGTDANFRDTEFTKKYMNLSTGAGDARGPWNQGNGIQY EENPNEKYGGPAAYGQDLGADSKGEIGPGYSDSTRNNPQYTQPKAPTPNVAGQEKPVH" gene complement(1439661..1440278) /locus_tag="Dhaf_1330" /db_xref="GeneID:7258300" CDS complement(1439661..1440278) /locus_tag="Dhaf_1330" /inference="protein motif:PFAM:PF01980" /note="PFAM: protein of unknown function UPF0066; KEGG: mem:Memar_1885 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0066" /protein_id="YP_002457822.1" /db_xref="GI:219667387" /db_xref="InterPro:IPR001378" /db_xref="GeneID:7258300" /translation="MSIELKSIGTIHTPYIPTLPIPEQPVQDAPGEFWISLNPEYVEG LSELSSYRYITLLFYLDKVSEKSLKVNPSIAPELEVGVFASRSPRRPNPLGLSVVELR GIEGNEILISSIDAYNGTPLLDIKPYIKSIDIKADANDGWMDTLPDKEHLLAHFLGLP HDHAHEHSHDHAHEHSHDHAHEHSHDHAHEHSHDHAHKHSHDHNH" gene complement(1440284..1440472) /locus_tag="Dhaf_1331" /db_xref="GeneID:7258301" CDS complement(1440284..1440472) /locus_tag="Dhaf_1331" /inference="similar to AA sequence:KEGG:Sfum_0850" /note="KEGG: sfu:Sfum_0850 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457823.1" /db_xref="GI:219667388" /db_xref="GeneID:7258301" /translation="MCEANAYLKDGVEEVLFMEAVDIIEPHDEGLKLVDIYGKQKFIR ASIKDMNLLNHRIVLEKG" gene 1440737..1440952 /locus_tag="Dhaf_1332" /db_xref="GeneID:7258302" CDS 1440737..1440952 /locus_tag="Dhaf_1332" /inference="protein motif:PFAM:PF01361" /note="PFAM: 4-oxalocrotonate tautomerase; KEGG: rci:RCIX321 putative 4-oxalocrotonate tautomerase" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate tautomerase" /protein_id="YP_002457824.1" /db_xref="GI:219667389" /db_xref="InterPro:IPR004370" /db_xref="GeneID:7258302" /translation="MPMIHFDGPVLTMDQKRSLIHGISQAASQATGLPMASFTVVLDE HEYSNFGIGGEVLVESNFWAKVKEIKD" gene 1441074..1442249 /locus_tag="Dhaf_1333" /db_xref="GeneID:7258303" CDS 1441074..1442249 /locus_tag="Dhaf_1333" /EC_number="2.1.1.63" /inference="protein motif:TFAM:TIGR00589" /note="KEGG: ctc:CTC01413 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding" /codon_start=1 /transl_table=11 /product="methylated-DNA/protein-cysteine methyltransferase" /protein_id="YP_002457825.1" /db_xref="GI:219667390" /db_xref="InterPro:IPR001497" /db_xref="InterPro:IPR014048" /db_xref="GeneID:7258303" /translation="MGETMERMEKILLERNWQDLEKLVLVSSKKAIRTLVNRIYIKDG LGFWRAVEALGVASALAEEQKKDSSVELVRRYFWSLNEESGGNAWNAAEAIGSIMASN PKECGHFNWMLANLLEDESLQEGTLWGLLNLSINAPEVVDPLVERVYPFLEARDVNQR GLAVWIFSLMKACPSAKERWEIEEELHKTLIQDQEMAEIYWEGEYYHFPVSELLGKEI VTFYAREYKQADFTWNISVASSQKGLCWVGLGTPEKEEGELRTWVQKRVPGSLVIPRA LPNQKVMEQLEDYFSGIRQEFNLPLDPRGTDFQLKVWEELCRIPYGETRSYGEIAQNI GNPKGQRAVGLANNKNPIAIIIPCHRVVGKKGDLVGYASGLDHKVRLLNWEAAHRHQ" gene 1442293..1442673 /locus_tag="Dhaf_1334" /db_xref="GeneID:7258304" CDS 1442293..1442673 /locus_tag="Dhaf_1334" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbl:CLK_1011 glyoxalase family protein" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_002457826.1" /db_xref="GI:219667391" /db_xref="InterPro:IPR004360" /db_xref="GeneID:7258304" /translation="MSEKKLFQGIAHIGIKAIDMDRAAAFYSEVLGFELIERIKPGDV ELIFLKCGETVIELIEVNDQRKFGDGVVNHLALGVKDIFPAVAWLKDHHVECIDEEPR EMEGGRYNFFFRGPSGEKLELFQG" gene 1442712..1443698 /locus_tag="Dhaf_1335" /db_xref="GeneID:7258305" CDS 1442712..1443698 /locus_tag="Dhaf_1335" /inference="protein motif:TFAM:TIGR01212" /note="KEGG: gtn:GTNG_2746 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457827.1" /db_xref="GI:219667392" /db_xref="InterPro:IPR005911" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258305" /translation="MSYGRQEKLNFNWQNGDKRYYTLNQHLRHFFGDKVFKVSLDAGF TCPNRDGRVGQGGCIYCSARGSGDFAGQAEKSIHEQFCEIKEVMNRKWSSARYLAYFQ AYTNTYAPLKRLQEVYEQALAEEGVVGLSIATRPDCLPAEVLDYLEELNQRTYLWVEL GLQSIHDRTMEWVGRGHTFEDFLQGLDKLRRRNIRVCTHMIYGLPGETLEDMFGSAQT LAKLDVQGVKLHLLHVLKGTPLADIYEQSPFPLLSQDEYIHLICDTLEILPAQTVIHR LTGDAPRKDLLAPLWSLKKWEILNAIDRELERRGTWQGKKAQNKTADTTHSI" gene complement(1443759..1443953) /locus_tag="Dhaf_1336" /db_xref="GeneID:7258306" CDS complement(1443759..1443953) /locus_tag="Dhaf_1336" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457828.1" /db_xref="GI:219667393" /db_xref="GeneID:7258306" /translation="MNSQKLTPDPVYQAILQTHTDSLKRYLSLAPALRTPSQGNKSGA NPANQYYQNLQSQAKSFEEG" gene complement(1443978..1445219) /locus_tag="Dhaf_1337" /db_xref="GeneID:7258307" CDS complement(1443978..1445219) /locus_tag="Dhaf_1337" /EC_number="5.4.3.2" /inference="protein motif:TFAM:TIGR00238" /note="KEGG: chy:CHY_2479 putative L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein" /codon_start=1 /transl_table=11 /product="lysine 2,3-aminomutase YodO family protein" /protein_id="YP_002457829.1" /db_xref="GI:219667394" /db_xref="InterPro:IPR003739" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258307" /translation="MAIEFLPPNPRQASQARALELKQKVQSYNKRKETIPCGLALSEE FNENRDFILDQLDADLEHWQDWKWQLKNRIQDAENLSTLLPLTPKQRHEINEVGKAYR WAVSPYYLSLIDKDDPQDPIRLQSLPSVEEILDDSGEADPMGEEYTSPAPCITRRYPD RLIINVTNLCAMYCRHCQRRRNIGEIDLHETRANLEAALDYIRSNPEIRDVLVTGGDA LLLSDQMLDWLLGELHEIKHVEIKRIGTRVPVTLPMRITDELCAILEKYPPLYINTQF NHPQEVTEETKKAADRLIKAGVILGNQAVLLKGINDQPEIMKRLNQELLKIRVRPYYI FHAKNVKGTSHFIPRIQDGLRIMENLRGYTSGLAIPTYIINAPGGGGKTPILPQYLIS LNDEEAVIRTWEGKVVHYPNH" gene 1445629..1446234 /locus_tag="Dhaf_1338" /db_xref="GeneID:7258308" CDS 1445629..1446234 /locus_tag="Dhaf_1338" /inference="protein motif:PFAM:PF02080" /note="PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: tex:Teth514_1200 TrkA domain-containing protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002457830.1" /db_xref="GI:219667395" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR006037" /db_xref="GeneID:7258308" /translation="MEYNARYQEIAIDIAHSIVMGEYREGEKIHGRSTLAGRYNVSPE TIRRSIAILQTMGVVMVSQGVGITVVSKSMAEKFMRGFDQKAEIQVYFDELKKLMEQR RELDQKIDAHLTKIVNYTDRLASRWMDVAEIEVAKGSSAKGKTLSDLKLREKTGLTVV AVVRGGIEQFSPGAEFILDDGDILLAVGSEQGKEKLQEILR" gene 1446302..1447582 /locus_tag="Dhaf_1339" /db_xref="GeneID:7258309" CDS 1446302..1447582 /locus_tag="Dhaf_1339" /inference="protein motif:PFAM:PF06580" /note="PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: mta:Moth_2171 ATP-binding region, ATPase-like" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_002457831.1" /db_xref="GI:219667396" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR010559" /db_xref="GeneID:7258309" /translation="MIFESIVILGVELMLVLVTGQMNLLILFLIGNTFFLLYHLNLEY KKTARQATERNAELSFKIANQTLPYLRRGLNEQNAEYIAKIIQEIGQVAAVSITDCEK QLAYLGVGCDQHHPGDKILTRATRDVIQSGVYKIVRTQKELNCPRQNTCDCPLAAAVI VPLKCQGEVVGTMKLYETKVGQLSSDLIRLAIGMADLLGIQIELAELDHQAKLAAEAQ LNALQAQINPHFFFNVLNTIIATSRTSPNRSRRLLIHLAEFFRKALKSHGSLITLREE MSFVKTYLILEKARFGRKLHFKSEIPEELMDALVPRLSVQPLVENAVKHGITEKIGNG VVSVKVEQKGQELYITVADDGVGIQPERLQEVLKPGVGSGNGVGMANVHERLIGHYGK EYGLQIKSQPNISTTVTMHLPLTTMEDEDMLEKL" gene 1447604..1447960 /locus_tag="Dhaf_1340" /db_xref="GeneID:7258310" CDS 1447604..1447960 /locus_tag="Dhaf_1340" /inference="protein motif:TFAM:TIGR00516" /note="TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: tte:TTE2171 phosphopantetheinyl transferase (holo-ACP synthase)" /codon_start=1 /transl_table=11 /product="holo-acyl-carrier-protein synthase" /protein_id="YP_002457832.1" /db_xref="GI:219667397" /db_xref="InterPro:IPR002582" /db_xref="InterPro:IPR004568" /db_xref="InterPro:IPR008278" /db_xref="GeneID:7258310" /translation="MIPGVDIVEIQRFAKACERTPKLRERLFTEREIEKLQHKAVSSW AARFAGKEAVLKALGTGLRGLSWHDIEILSNDLGEPAVFLTEKAEIVLHRRGGTQIRI SLSHEKEYAVGMAILF" gene 1448120..1449685 /locus_tag="Dhaf_1341" /db_xref="GeneID:7258311" CDS 1448120..1449685 /locus_tag="Dhaf_1341" /inference="protein motif:TFAM:TIGR00196" /note="TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: pth:PTH_0657 carbohydrate kinase" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, YjeF related protein" /protein_id="YP_002457833.1" /db_xref="GI:219667398" /db_xref="InterPro:IPR000631" /db_xref="InterPro:IPR004443" /db_xref="InterPro:IPR017953" /db_xref="GeneID:7258311" /translation="MRVVSAHQMRELEERAIRDFGIPSLLLMENAALAVIQEVRQMLE DRHIQLSAGRATVFVGKGNNGGDGLAVARHLLILGMDITVYSFARAEEFKGDAALNYR LYQNTGGKLFTIEGEKQRRLVRISLAQADVIIDAIYGTGFRGALPSLIDEYVEEINRA QVPVVAVDIPSGVEADTGKVYRKAIMADATVTFGLPKLGHFLGVGPEYAGRVSVDPIS IPERFLDDEKLTTSILTEDVCQYLPIRSLQGHKGTHGRGVLVAGSEGMTGAALLAGKA ALRSGIGLLQMVVPRGLAEGIDLALTEATVWGAESEKALNGNAWPVIYERAEKAQALA IGPGLGQEPELLLVIEEVLRNLPLPVILDADALNVLAKEPGILGWRQGRGPLILTPHP GEMARLCGCTTEEVQANRLELAISKAVEWESIIVLKGAITIIAAPDGRAFLNPTGNPG LGTGGTGDVLTGSILAWLAQGVEPLAAACLGVYLHGKAADQLTGEFGLSGYTAGEVAD QLPKARRSLENNH" gene 1449697..1450809 /locus_tag="Dhaf_1342" /db_xref="GeneID:7258312" CDS 1449697..1450809 /locus_tag="Dhaf_1342" /EC_number="5.1.1.1" /inference="protein motif:TFAM:TIGR00492" /note="KEGG: pth:PTH_0660 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="YP_002457834.1" /db_xref="GI:219667399" /db_xref="InterPro:IPR000821" /db_xref="InterPro:IPR001608" /db_xref="InterPro:IPR011079" /db_xref="GeneID:7258312" /translation="MENRRPVWTEINLQALQRNYDRIQALTESEIMPIVKADAYGHGA LQAVEAFYERGARRFGVALLNEALELRRAYPDIKVMLIGSLPEESIETVVKEDIICGV YQLDQAVILAKEAERQGKKAVIHLKVDTGMGRIGFREEDWEELFGCTKLPGLYIEGIY THFATADHSDLRFAREQLRKFLVMCDKIKAQGIHIPIRHAANSGALLQLPEAHLDMVR PGIILYGLPPSQHVGNDLGLEPVLSWKAKISHIKVVPQGETISYGRTFRTAYPTRVAT IPLGYADGLRRNLSNKGEVLIKGRRTTMIGRVCMDQTMLDVTKIPEVQVGDVVTLLGM DGYERIDATEMAGWLDTINYEIVCGISKRVPRVYIK" gene complement(1450995..1451525) /locus_tag="Dhaf_1343" /db_xref="GeneID:7258313" CDS complement(1450995..1451525) /locus_tag="Dhaf_1343" /inference="similar to AA sequence:KEGG:Nther_0108" /note="KEGG: nth:Nther_0108 ferripyochelin binding protein (fbp)" /codon_start=1 /transl_table=11 /product="ferripyochelin binding protein (fbp)" /protein_id="YP_002457835.1" /db_xref="GI:219667400" /db_xref="InterPro:IPR001451" /db_xref="GeneID:7258313" /translation="MLYSYLDKRPTLGKDVFIADGAKIIGDVHIDEGASIWYNSVIRG DIASIYIGKGTNIQDLSVIHVNTNVPVIIEDDVSIGHSVTLHGCTIKKGTMVGMGSTI LNGAIIEEGSMVAAGSLITENKQFPPHVLIMGSPAKVVRALTSDEVNALKETAERYSQ KAREHRENSPLPIAKC" gene 1451818..1452834 /locus_tag="Dhaf_1344" /db_xref="GeneID:7258314" CDS 1451818..1452834 /locus_tag="Dhaf_1344" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bce:BC1415 glycerate dehydrogenase" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /protein_id="YP_002457836.1" /db_xref="GI:219667401" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:7258314" /translation="MKQNVDSNRKKVFITGRIPSLAYEILSKEFDVTMHDDLRLLSKE EIIAGLKGKDALLCLLSDAIDKDIIEANPQLKVIANYGAGYNNIDIAAAGEANIPVTN TPDVSTDATADLTFGLILAIARRIVEGDKETRAGRFKGWAPLYHLGVDVTGKTLGIIG MGNIGKAIARRAKGFDMKIVYTSRTRLSEQQEKELGFTYMSLEGVLKTADFVSLSLSY SPATHHMIGERELETMKPSAYLINTARGPLVDEKALLKALENKSIAGAALDVYEFEPQ ITAGLEKLDQVILTPHIGNATVETRDAMAEIAAGNIAAVLRGEAPLTCVNQNYLKKRN MAAK" gene 1452939..1454369 /locus_tag="Dhaf_1345" /db_xref="GeneID:7258315" CDS 1452939..1454369 /locus_tag="Dhaf_1345" /inference="protein motif:PFAM:PF08353" /note="PFAM: Mur ligase middle domain protein; domain of unknown function DUF1727; KEGG: dau:Daud_0588 domain of unknown function DUF1727" /codon_start=1 /transl_table=11 /product="domain of unknown function DUF1727" /protein_id="YP_002457837.1" /db_xref="GI:219667402" /db_xref="InterPro:IPR001645" /db_xref="InterPro:IPR013221" /db_xref="InterPro:IPR013564" /db_xref="GeneID:7258315" /translation="MGHRVKRRYRRETNKSFLACPMGGQGHEQYIKAAGQKGTTLPGK IALQVEPQLMGMLSSAYTDGIIMVTGTNGKTTTANLLAQILKADGKTFAFNQAGANLV TGITGALLANTGWGGRSKVKMALLEVDEATVPKFCQQVTPYVAIVTNFFRDQLDRYGE LDTTIKLVRDAIPPQTHLILNADDPLVAQFGRERIHTLYYGVEQTPDSKIYSTETREA RFCPHCGAELVYTLYHYGQLGIYACPCGYKRPEPPVLAQNVKAGEDGIQFRVEPTSYS ITLQGYYNLYNALAAMTAAKRIGIKDREIQRGLSEFIPQAGRMEQFILPQGAVTLTLV KNPTGFNQVLQTVLSRKEHPIRLLIGINDLAADGRDISWLWDVDFECLGREEERIQRI VCSGLRAEDMAVRLKYAGVPADKLHLEREMSNALEKLSEGLAGQATIFILPTYTLLFP TRELLANRQIKSCELNSRQHIQRGEG" gene 1454372..1455136 /locus_tag="Dhaf_1346" /db_xref="GeneID:7258316" CDS 1454372..1455136 /locus_tag="Dhaf_1346" /inference="protein motif:PFAM:PF07685" /note="PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: tex:Teth514_0007 glutamine amidotransferase" /codon_start=1 /transl_table=11 /product="CobB/CobQ domain protein glutamine amidotransferase" /protein_id="YP_002457838.1" /db_xref="GI:219667403" /db_xref="InterPro:IPR011698" /db_xref="GeneID:7258316" /translation="MKIKLGHLYPDLLDLYGDRGNILVLAARTRWRGLDFEVQNVSLG EQIDFHALDILFLGGGSDREQNILVADLMGRVEELKAAIEDGLVVLSICGGYQLLGQY YQTAEGQRIPGLGILDLWTVAGANRLIGNVVVNLELEELAEVNSGSLSTLVGFENHSG RTYLGPGLEPLGKVIHGHGNNGEDQGEGMRYKNVFGTYLHGPLLPKNPHFADVLLKLA MERRGEAGNLTLLDDQLERLAHESVVERILAKQKKI" gene 1455366..1455644 /locus_tag="Dhaf_1347" /db_xref="GeneID:7258317" CDS 1455366..1455644 /locus_tag="Dhaf_1347" /inference="protein motif:PFAM:PF01402" /note="PFAM: CopG domain protein DNA-binding domain protein; KEGG: mta:Moth_2166 CopG family transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, CopG family" /protein_id="YP_002457839.1" /db_xref="GI:219667404" /db_xref="InterPro:IPR002145" /db_xref="GeneID:7258317" /translation="MAESKRIMISLPENLLAEVDDVVTLENRNRSEFIREAINSVLHE RRKRGIREQMRKGYEEMAQLNLAIARELFLAEEEVQVVYEDSNVECQR" gene 1455641..1455991 /locus_tag="Dhaf_1348" /db_xref="GeneID:7258318" CDS 1455641..1455991 /locus_tag="Dhaf_1348" /inference="protein motif:PFAM:PF02452" /note="PFAM: PemK family protein; KEGG: mta:Moth_2165 transcriptional modulator of MazE/toxin, MazF" /codon_start=1 /transl_table=11 /product="transcriptional modulator of MazE/toxin, MazF" /protein_id="YP_002457840.1" /db_xref="GI:219667405" /db_xref="InterPro:IPR003477" /db_xref="GeneID:7258318" /translation="MIIKRGEIYYAELNPVVGSEQGGTRPVLVIQNDIGNQFSPTTII AAITSQIAKAKLPTHVEVRAKRSGLERDSVILTEQIRTIDKSRLKEKVAVLDEEVMLR VDQAIEISLGLTDI" gene 1456188..1456910 /locus_tag="Dhaf_1349" /db_xref="GeneID:7258319" CDS 1456188..1456910 /locus_tag="Dhaf_1349" /inference="protein motif:PFAM:PF07722" /note="PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: swo:Swol_1878 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptidase C26" /protein_id="YP_002457841.1" /db_xref="GI:219667406" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR011697" /db_xref="InterPro:IPR011702" /db_xref="GeneID:7258319" /translation="MKRKPVIGITAAHCNEELKSYPRARYVEAVREAGGQPILLPPVA AAEDAEEVIALMDGLILTGGGDISPILLGEDPLRGIGDCLPDRDFSEILLTQKALEVN LPLLGICKGIQVLAVAAGGKIFQDIISQCPESMEHKMKAPRDFSWHEITLKESRLRTF LGEERIAVNSVHHQAVSEAPQGFVISAVAPDGIIEGIEKVDAHFCIGVQWHPEVMMKD KSSQKIFQELVAAGAGYYRRRH" gene 1457199..1459334 /locus_tag="Dhaf_1350" /db_xref="GeneID:7258320" CDS 1457199..1459334 /locus_tag="Dhaf_1350" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mgm:Mmc1_1581 aminotransferase, class V" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002457842.1" /db_xref="GI:219667407" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258320" /translation="MKMSTKVTQKTICGICPGGCAVEVGVKNGELVEISPLKGVPFGA LCIRGKHAPEVVHSPDRLKKPLIRTGKRGDGQFRETTWDEALNYVAERLLAIKEKYGP QAVASHSGRGTFEQSFAEFTGGGETMTSRFLWPFGSPNVASVSSLCFTSFGVLAPKAN FGLLGPALEPDIENSKLIVVWGANPATDSPPFMFDRILKAKQKGIGIIAIDHMRSDIA KRADQWIAVRPGTDGALALGLLNLVIEEELYDKEFVESWTIGFAELREYVKEFSPVEV EKITGVPAEQVIQLARLIATTKHTTLRTYTGLEYSNGGVQSIRAVYLLWAITGNIDVP GGLIINQALRSGNQRLFAYKPEGIAPIGAAEYPLFYELTESAQFMEFPKAVLEGKPYP IKGLINIGASILTSYPQTHIWEETFASLDFLVVIDRFLTRDAQFADVVLPATTYFENT SYQRYPGYLRLRRPVIEPVGEAKSDLAILAALAERLGYGELFPQGDDEFLKQAFAENP EVLERLQEAEDGILLPRPEPQYQKYAKGLLRADGQAGFNTPSGKVEINAGILLQYGYD GLPVYSEPAEGKFGNPDLYKKYPLILNTGARIQSTFRSQHLNIPGLLKLQEKPQVIIN PEDAFLRGVRNGDKVVILTERGSVEFYAAVTEDIPQGVVELNVGGGGPIQAEPWRHAN ANNLTDFYNRDPISGFPVLKALLCQIERT" gene 1459597..1459905 /locus_tag="Dhaf_1351" /db_xref="GeneID:7258321" CDS 1459597..1459905 /locus_tag="Dhaf_1351" /inference="similar to AA sequence:KEGG:BCE_A0020" /note="KEGG: bca:BCE_A0020 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457843.1" /db_xref="GI:219667408" /db_xref="GeneID:7258321" /translation="MRIAIVGGQNHNQETYGKLLGKTGRVEIHFYDGIPKKHNKRNLE KLIKDVDLVIVILGACSHASMWDTKKAAKKCHKEVLFSRGIGISSIVKQIAGKPAYTA" gene 1459936..1460163 /locus_tag="Dhaf_1352" /db_xref="GeneID:7258322" CDS 1459936..1460163 /locus_tag="Dhaf_1352" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbe:Cbei_0619 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457844.1" /db_xref="GI:219667409" /db_xref="GeneID:7258322" /translation="MIKYPCQEVLRIKESEKVQPAVSQVNPSWVVTLLEIIDSMKHGS VTIIVQDGIVIQIDKNEKFRLKNQVNRKGTA" gene 1460361..1461239 /locus_tag="Dhaf_1353" /db_xref="GeneID:7258323" CDS 1460361..1461239 /locus_tag="Dhaf_1353" /EC_number="1.18.6.1" /inference="protein motif:TFAM:TIGR01287" /note="KEGG: rru:Rru_A0795 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein" /codon_start=1 /transl_table=11 /product="nitrogenase iron protein" /protein_id="YP_002457845.1" /db_xref="GI:219667410" /db_xref="InterPro:IPR000392" /db_xref="InterPro:IPR005977" /db_xref="GeneID:7258323" /translation="MEKKITQIAIYGKGGIGKSTTTSNLSAALSKLGYKVMQFGCDPK SDSTNTLRGGKYIPTVLDTLREKSVVKASEVIFEGFNGIYCVEAGGPAPGVGCAGRGI ITAVELFKQQKVFASLDLDFVIYDVLGDVVCGGFAIPIREGIAEHVFTVSSSDFMSIY ASNNLFKGIKKYSNSGGALLGGVIANSINQGYAKAIVDDFVERTQTQVVEYIPRSITV TQSELQGKTTIEAAPESEQAKVYTRLAEKIVEHKSSKVPAPLEIKELQEWATSWSDQL LALERGVVVGGNAAGI" gene 1461278..1462612 /locus_tag="Dhaf_1354" /db_xref="GeneID:7258324" CDS 1461278..1462612 /locus_tag="Dhaf_1354" /EC_number="1.18.6.1" /inference="protein motif:PRIAM:1.18.6.1" /note="PFAM: oxidoreductase/nitrogenase component 1; KEGG: mbn:Mboo_2010 nitrogenase" /codon_start=1 /transl_table=11 /product="Nitrogenase" /protein_id="YP_002457846.1" /db_xref="GI:219667411" /db_xref="InterPro:IPR000510" /db_xref="GeneID:7258324" /translation="MAIFIERPRTSCALGGALATMSALPRVVPIIHSALGCGGNLSGA AAFGAGYCGSSYASGQSAPTSAVTETEIVFGGSDRLHEEIQSTLDLIDADLFVVATGC MTEMIGDDVQGVVSEFAGGRKPVIAISTPSFKGDAYAGYSITLEGIFNKYLPRSNSKK PKLVNLFGLVPSYDPFFRGDLSEIKRLLEKLGLEANTFFTPDQTFANLTSAPSATLNI LFSHVWGVEFVKNFEQTHGTPYWITDLPIGPEATDHFLREVAEKLEIEPQRVEEVIAQ ENKEYYGYFQRAVDIFTDADYKFYAAIITNSNYAIPYAEFLEKELGWVPKDIFITDLL HDGQKERLREAFQAKNLLGELIFERDTSRIGVTLRQRHPQDQGQRYFDAYAPLYLLGS SLEKELAVGRGLHYLSVSFPVYNRIIVDRGYSGYRGGLHLFEDLIDVLVAPK" gene 1462623..1464140 /locus_tag="Dhaf_1355" /db_xref="GeneID:7258325" CDS 1462623..1464140 /locus_tag="Dhaf_1355" /EC_number="1.18.6.1" /inference="protein motif:PRIAM:1.18.6.1" /note="PFAM: oxidoreductase/nitrogenase component 1; KEGG: ckl:CKL_0527 predicted nitrogenase molybdenum-iron protein" /codon_start=1 /transl_table=11 /product="Nitrogenase" /protein_id="YP_002457847.1" /db_xref="GI:219667412" /db_xref="InterPro:IPR000318" /db_xref="InterPro:IPR000510" /db_xref="GeneID:7258325" /translation="MSYYEQNIPPTREQRLTIGDSFSGCGKELLDCAQSGCMLQKNRK FWQAGACQMQLSLMMAATVENSVIIMHGPVGCGSTLHSLGPAANKGKAKRGKKPQALV WLSTNLQESDVIGGGEKKLRETVEYADKTFRPEIIFVVSTCTPSIIGDDVEEVVHQTQ KGVAAHLVSIHCPGFRTRVVATAYDSFYHGLLKHLPLEPLPAEAFIPLKENDPGYELA AQQFAYRKSRTVNLFNATSIGPADEEELVRLLKALNLNVQVYTEYSSLAEYRKMSQAA LNISMCNVHDDYLLAYLQDKYALPYVIQGMPIGTKAVRKWLLAVAEHFDLEEKANRLA DQEEKQVNEALQPFLPALKGKRVLISGGVIRVAEEAKVLKDLGLEVIGVRAYHYDNGA EPVYGSLVDELPEVHVSVSNQLFELANQIARYQPDLVIAHNGTQGWVAKMGVPAIQLF DVDRAYFGYRGLFSLVKRIAFAFENTSLPRRLAQHVNLPYKKEWYEKDPFSYLKG" gene 1464178..1465281 /locus_tag="Dhaf_1356" /db_xref="GeneID:7258326" CDS 1464178..1465281 /locus_tag="Dhaf_1356" /inference="protein motif:COG:COG0715" /note="KEGG: smu:SMU.651c putative ABC transporter, substrate-binding protein" /codon_start=1 /transl_table=11 /product="ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein" /protein_id="YP_002457848.1" /db_xref="GI:219667413" /db_xref="GeneID:7258326" /translation="MRKPQRGLVFRLTAVLLAGALLAGSLTGCASNQGAPAQSSQVGT EQPQPGESANLTPEQYEAAYQAEPAAKRVIHIGYNGGLCQAPIAIAQEKGFFEAEGLN TELTRAEDTRDAIVGGKIDTSAGMVAGWLKPITSGVDLVFTVGLHTGCASAIALADSP INSFADAKGKVVAINGGIGGIYHNIAYRLIAHDGYVPGDFTWKDFPAEQALQVLQKGE ASIAVLADQLAEKWVQEGLVKRIRSTTLDEDFKNETCCVLGISGDFIRENPVTAEKIT RAIYKASLWVEENKEETAQILLDNKHISGSVDYAMDLLKLYNYNVTNDGTEKSIYDSI DEYKALGVIDQNLDAETFKKQVWHRFELEDLKN" sig_peptide 1464178..1464270 /locus_tag="Dhaf_1356" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.509 at residue 31" gene 1465303..1466319 /locus_tag="Dhaf_1357" /db_xref="GeneID:7258327" CDS 1465303..1466319 /locus_tag="Dhaf_1357" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_0605 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457849.1" /db_xref="GI:219667414" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258327" /translation="MSTTPPLTSDQLAELEKRPKTEWQRTLDYMISGAPVAVAVILFL QYYFLPNYKFNTTTAVYPLFVGFFVLLLLGRFIGSFFSKKVHESLRAQAPFYSAVFIL LIIFDYLTLKTGKLPLPYFPWPDKILNAIIEDRVLLLDCIRNSLILLFTGYFFGGIVG LITGVTAGWSKKVHYWVMPIIKILGPIPSTTWLPIVLIIASSLFKGSVFLIALGVWYP VTIATLTGVANVRKSYFEVARTLGARQRRLVFKVALPAAMPNIFQGLTQGMSVACTTL MVAEMMGVESGLGWYINWQKGWAEFGKMYAAVIVICLTFTVVNIVLTQVKKRVLRWQE GTIQ" gene 1466316..1467104 /locus_tag="Dhaf_1358" /db_xref="GeneID:7258328" CDS 1466316..1467104 /locus_tag="Dhaf_1358" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2174 predicted ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457850.1" /db_xref="GI:219667415" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258328" /translation="MNGGKGYIQIKNVTKIFARNDLATTLTALSDVSIDIQPGEFVSI VGASGCGKSTLLRIIAGLETPTHGGAFCDGERIEEPSARRGLVFQDPTLFPWLNVWDN VAFGLKAEGKYKEKKESISKLLQLIGLEEFHKSYPHQLSGGMSQRVSLIRALANEPDV LLLDEPLGALDAFTRMNIQDELINLWKQRGTTMILITHDVDEAIYLSNRIIVMSPRPG RIMKELKLDMYHPRNRGASEFVDYRNQILKLLHFADEEVTEYYL" gene 1467123..1467485 /locus_tag="Dhaf_1359" /db_xref="GeneID:7258329" CDS 1467123..1467485 /locus_tag="Dhaf_1359" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_0627 dinitrogenase iron-molybdenum cofactor biosynthesis protein" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002457851.1" /db_xref="GI:219667416" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7258329" /translation="MLAAFASKDGKFVSQHFGHSPCFYIVEINEESYAWTFAERRENS PPCRFGEHDDQTFADSISLLSDCQVLFAVKVGSYAKAVLQRHNVQVLEMTGFIEDILA GYISYLKKQRERRAHHKH" gene 1467532..1468488 /locus_tag="Dhaf_1360" /db_xref="GeneID:7258330" CDS 1467532..1468488 /locus_tag="Dhaf_1360" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_0628 radical SAM domain protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002457852.1" /db_xref="GI:219667417" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258330" /translation="MAVEIEAQGIRPLRRQIINQIEQLIETQMEHQLRTPNISDHPCF NGAVHGKKGRLHLPISPACNIQCRFCRRACNSKELRPGVAKGILPIEEAVDIVGKALE LCPEITVVGIAGPGDALASFHAVEAFRQVHKAYPHLIKCLSTNGLALPGKADLLYDLG VRTVTVTVNAVDPWSASKVVSHILWEGKVYRGEEAGRILLAHQLRGIQQASQRGIIVK VNTVLIPTINDHCIGDIARTVKQAGATVHNIIPLIPQHELKDIPAPTCEQINKARSDG EVYLKQFRHCQHCRADACGIIGQEDLSAELYGGRRMETFSHG" gene complement(1468570..1470804) /locus_tag="Dhaf_1361" /db_xref="GeneID:7258331" CDS complement(1468570..1470804) /locus_tag="Dhaf_1361" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_3308 sigma-54 dependent trancsriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002457853.1" /db_xref="GI:219667418" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7258331" /translation="MRDELFESFPFGIIRIDSTNKIQRMNHYAKQLTHALDPESLETL LTLKPKNDITTWSVANHQIALNVELFMVSGDSNRLLLLGLEPNFTSALPPQFERALED LTTDPEEIVLRIVTMISEATSFERFDLVRVNPQLRKYSYAYSIGLEIEGSIYAPYSQI RKTGLGWILETEAPQLSSSLQPEGFSFSEDPMLYRTGFRSALRVPILFGHEVIGAILL GGTKALQFEIEDAYLISQISRHFSQAFYHSGIIQERSYQAMATSAFLHSMAENLKDDH ILDFLNDYCIQLQIATQLESIYLCLLDQTHQQQKLLVSAGRKFPQKNEWKPLDKEIAA MLQAKSIVCYSLVHTSIQNTDELLNQGFTSTLYAPIEHRETIVAALVAAAMDEKASSP YMSGLFKVATEQLSSVVARLPNAPGAVPEPNSSRQLPKPTRKDRLQDQETSGFSRIIG SSKIMQDTIQNAARVAQYDFPILITGETGTGKELLAKAIHQSSQVAQGPFIVVNSAAI PANLLESELFGYQEGAFSGGVKGGKPGKILLANRGTLFLDEIGELSPELQAKLLRVIQ EQEIEPLGAIKPIPIKVRILSATHRDLSSMVEQGEFREDLLYRLNSIEIKIPPLRERG QDILELAEHMLQFLAQSHDTPEKTLSPGAQDLFLKYTWPGNIRQLQNIINRLYVFAEG STIHTQDLPPDLRVAETDKGHSEKEEIAGLLAEFGGNKTALAQYLGITRTGLWKKLKR LGLQ" gene 1471138..1471713 /locus_tag="Dhaf_1362" /db_xref="GeneID:7258332" CDS 1471138..1471713 /locus_tag="Dhaf_1362" /inference="protein motif:PFAM:PF07681" /note="PFAM: DoxX family protein; KEGG: bce:BC0194 hypothetical protein" /codon_start=1 /transl_table=11 /product="DoxX family protein" /protein_id="YP_002457854.1" /db_xref="GI:219667419" /db_xref="InterPro:IPR011637" /db_xref="GeneID:7258332" /translation="MKNPIKSVIALLIRFYFGYYFLNAGIGKFQTGFNGDSVGGFLKG GLAQTAEAMAAAGKTGKANVTDTWGWLISHVFLPNADIMAVMVKTGEVMIGLGLILGC FTTLAAFFALTMNFSFLLSGTVSSNPQMVIGFLFVLYFAAASGAIGVDRFFMHKLVDK FPILNKGFLRHLFPVDAGHRGAIKNTISQVG" gene complement(1471774..1472316) /locus_tag="Dhaf_1363" /db_xref="GeneID:7258333" CDS complement(1471774..1472316) /locus_tag="Dhaf_1363" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: msi:Msm_1574 nitroreductase, NfnB" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002457855.1" /db_xref="GI:219667420" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7258333" /translation="MDTIKAIELRKSVRSYLPKPVEAEIITQLVRAGNSAPKVGIFHT SVIENPGILGEINEEALVQYKNSGDKLLMGRAALEGYQPLYGAPVFFLFSAPFANPLK EATTSCAATCITIAATALGLGSCYIHSALQGIRGNSKLMEKIGIPFGLTPICGVVVGH SAEHSLPPHRSITENVNYCR" gene complement(1472642..1472959) /locus_tag="Dhaf_1364" /db_xref="GeneID:7258334" CDS complement(1472642..1472959) /locus_tag="Dhaf_1364" /inference="similar to AA sequence:KEGG:Sala_1702" /note="KEGG: sal:Sala_1702 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457856.1" /db_xref="GI:219667421" /db_xref="GeneID:7258334" /translation="MKCPVCDAELTMSERQGIEIDYCPKCRGVWLDRGELDKIIERSN SFANSVNPAPASSNAPNPGQQYSGQTYEQPYGQPQHNPNYSNQDYYYKKKRRKSFLEE LFD" gene complement(1473091..1473258) /locus_tag="Dhaf_1365" /db_xref="GeneID:7258335" CDS complement(1473091..1473258) /locus_tag="Dhaf_1365" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457857.1" /db_xref="GI:219667422" /db_xref="GeneID:7258335" /translation="MIKKLALGVITAALLIVGTTAVFAETGGSAQPAQNQGCYGPQCG ASPCGPINNSY" sig_peptide complement(1473091..1473165) /locus_tag="Dhaf_1365" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" gene complement(1473409..1474800) /locus_tag="Dhaf_1366" /db_xref="GeneID:7258336" CDS complement(1473409..1474800) /locus_tag="Dhaf_1366" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tex:Teth514_0767 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002457858.1" /db_xref="GI:219667423" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258336" /translation="MRKRLFLSFLAIILLTLLLSILSVNFVFQKHFSDYLARSTEVTL EQLPERLSSSFFSHGCWNSDSLYNIAHSLPFGTHIVIKEPSGKTILTLINPMESMLKN DPGLWMDMGLNYTIEEWKNKTLMISGPNGVFAVAEVRYPARAKVLNPADQSFISAIYQ SLFLAGALALIIGIILSYWISRRLTSPLQGLTKAVQRVGEGFLDEQVPVATKDEVGQL ATAFNGMAESLKKQERLRKQLTADIAHELRTPLTSIRSYIEAFQDGVLPADKENLAII NEEIERLTRLSSDLKDLNVAEMGALRPYLTQVNLSALIDKTVNMLSPLIQEKGISLTW HKPESILIEGDEYLLTRLFYNLLHNAYKFTESPGKIEVQMELRHQEVLITISDSGIGI PEEDLPFIFERFYRSEKSRSRETGGTGIGLALAQQIALLHQGTLTVESCPDKGSRFML LLPLTIGEKSTSV" sig_peptide complement(1473409..1473498) /locus_tag="Dhaf_1366" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.350 at residue 30" gene complement(1474805..1475497) /locus_tag="Dhaf_1367" /db_xref="GeneID:7258337" CDS complement(1474805..1475497) /locus_tag="Dhaf_1367" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1847 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002457859.1" /db_xref="GI:219667424" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258337" /translation="MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENS YDLVLLDLMLPGLSGEEICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIVKPF SPREVVARIKAVLRRTHIETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKI LGALAKYPGRVYSRGQLVQIVQGHDFGGDERVIDAHIKKLRQKLEGVPGDPKIILTVY GVGYKFNAHKEE" gene complement(1475677..1476444) /locus_tag="Dhaf_1368" /db_xref="GeneID:7258338" CDS complement(1475677..1476444) /locus_tag="Dhaf_1368" /inference="protein motif:PFAM:PF00899" /note="PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: aoe:Clos_1707 UBA/ThiF-type NAD/FAD binding protein" /codon_start=1 /transl_table=11 /product="UBA/THIF-type NAD/FAD binding protein" /protein_id="YP_002457860.1" /db_xref="GI:219667425" /db_xref="InterPro:IPR000594" /db_xref="GeneID:7258338" /translation="MQHKFSRTELLIGKSALAKLSQSTVIIFGIGGVGSYTAEALARA GVGHLILVDYDEICLTNINRQLHALHSTIGKAKVDVMKNRILDINPKAKVDAVKEFFS AENAESFLGQKPDYVVDAIDTVSSKVALAKECSQRNIPLIASMGAGNRLSAENYRITD LSKTSGDPLAKAVRKLLRKEGITKGIKVVYSPDLPLTPLDTEADCRSNCICPGGDAHC ALKRQIPGSISFVPPVSGLLMAGQVVNDLIADCPREA" gene 1476784..1477365 /locus_tag="Dhaf_1369" /db_xref="GeneID:7258339" CDS 1476784..1477365 /locus_tag="Dhaf_1369" /inference="similar to AA sequence:KEGG:CHY_2094" /note="KEGG: chy:CHY_2094 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457861.1" /db_xref="GI:219667426" /db_xref="GeneID:7258339" /translation="MSNNQNSKKEKFTQPEKKSKAPLIGGVIVLGIAIIAGSFFLGNK GSDGDQYAVATLGQTFDYSGSPLPQVETPPVQAANGKVVVTTLSELKEKKFIYTQYQV NDKTIPLTAIALPDGKAIVAVSICEPCNSDSFRIEGKKLVCNACNTTWALDSFKGLSG GCQAYPPDRLIYTQNGDNLEVDQGILDAWKPRV" gene 1477433..1478131 /locus_tag="Dhaf_1370" /db_xref="GeneID:7258340" CDS 1477433..1478131 /locus_tag="Dhaf_1370" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1341 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457862.1" /db_xref="GI:219667427" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258340" /translation="MSLIKVDHVAKIYQGGEGTVYALKDTNLQVLQGQFLALLGPSGS GKSTLLSILGALNPPTEGKVFIDDIDIYGLDEERRADFRHEYIGFVFQQYQLIPYLTA LENVMLPLAITRHSDRTQREMAQKVLEKVGLGSKSLRLPNQLSGGEQNRVAIARAIVN NPVILFADEPTGSLDTKTAKEILELFQALNKEGQTIIMVTHNLENLAYVSHAVQIRDG IIEKAPQPVVGGVI" gene 1478128..1479288 /locus_tag="Dhaf_1371" /db_xref="GeneID:7258341" CDS 1478128..1479288 /locus_tag="Dhaf_1371" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2168 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002457863.1" /db_xref="GI:219667428" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258341" /translation="MNLFTITLGNLKRRKLRSLLLLFSIIIGVASSVFLFTTTRSMEQ DVADKIDQFGSNLLILPKTGETLSFGGVTVGTSPGQELDMDMIPQMKTIKNNETLATI SPKLLAEGEINTKRVLLVGVQFPEELRLKKWWTIEGLAVGQLPKSNEILIGSEVARIL DLSLGQEVEIKGEKFRVGGIIQPTGSLENDQAIFMDLPALQKVEDKPTAISLIEAAVL CYTCPIEDVSLQLSEKLPGTKVAALQSTIESRDDTVAQFSLFAAVISVILLMTSGFVV AMSMISAVKERTRDIGILRAIGFRKKHILRMFLYEVSLISALGGLMGFALGMGLAMQL GSTVVQMTVQVPFQPLLALYSLAAALVISLIAGIYPAWQASRLDPVEALRYF" sig_peptide 1478128..1478235 /locus_tag="Dhaf_1371" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.589 at residue 36" gene 1479322..1480458 /locus_tag="Dhaf_1372" /db_xref="GeneID:7258342" CDS 1479322..1480458 /locus_tag="Dhaf_1372" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0545 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002457864.1" /db_xref="GI:219667429" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258342" /translation="MTLNHIALQNLRRRPGKTLFLILIFAFIVAAISALTILALEMKA NLQKSLTEYGANVVISPRSEHLNLSYGGLSFSGVEYEVKKLDAGTGEKVSQEVGQEVI IAPKVIGSAETPGQTFMIIGVDFDQELKMKPWWKIEGMAAQDNQVVIGSRLAMSSDLK IGDTLDLGKGNYPVVGIMAETGGSEDQGVFTTIHTARTLTGITSEWSLIELNTPDAAQ TVAQLRPVLESANVTEVTQLVQGSQENVERFTSFSRTISLAMGLIGAMVIIVTLAGNV NDRTRELGVLRAIGFRQKHILFLLGREALIISLVGSLLGYSIGIVAPLVLGPLLGYGK FSFAFHVGLGSALVIGSLLVGILAMIYPAWRTLKLDLQEILIAL" sig_peptide 1479322..1479441 /locus_tag="Dhaf_1372" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.653 at residue 40" gene 1480649..1482364 /locus_tag="Dhaf_1373" /db_xref="GeneID:7258343" CDS 1480649..1482364 /locus_tag="Dhaf_1373" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3045 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002457865.1" /db_xref="GI:219667430" /db_xref="InterPro:IPR000712" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7258343" /translation="MQKFRNLKTASKINSLVLLMAVFLGLVGFVGIYSANNLAASLEG MYQDNLLPIKWLNAARGQSRAVEAMTLELFITQDQDRQQEILQDVQERAAEVDTLLSD YGKTTMDTYEQERLPKLMDELQIYRTERSKAVDLALAGKQDEAYTYFAANAADDLDVV NALLEELADYNAQIADDEGIKSKSLASMVSKLMIGITFAAIVLALGIGWYIARMIANP LAQLVGTVREIAQGNLAVRRMDLISQDEVGQLAAEFNTMTDNLRVLVKNIAYTSEQVA ASSEELTASAEQSASATNQIAATITDVAAGATRQEAAIDDTASIVEQMSAGVQEIAAN ANTVSRSAEMTATAAGQGDKAVEAAVSQMKNIEITVAGTAQVVRQLGERSKEIGQIVD AISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQEAAKEIAGLIAEI QQETGSAVNAMHDGTREVKVGSEVVNSAGQAFKEIVNLIGEVSTQVREISAAIQQMAS GSQQIVDSIRDIEHISNEASSQTQTVSAATEEQSASMEQIAASSQALAKMADELQNSI GKFRV" sig_peptide 1480649..1480768 /locus_tag="Dhaf_1373" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.630 at residue 40" gene 1482528..1482944 /locus_tag="Dhaf_1374" /db_xref="GeneID:7258344" CDS 1482528..1482944 /locus_tag="Dhaf_1374" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457866.1" /db_xref="GI:219667431" /db_xref="GeneID:7258344" /translation="MQEYVKPNMILPISLHDARLSSIRVESDMITFVMEDGIRTIDGN QVEQIGKAMVSFPKADFDFCRIYCTGRDNYQKEWDIRDFTTKLQAGVFIIDIIDETYG YNQAKFVCNMTVNHEWFACDIEIYHFGLIKYNWEST" gene 1483012..1483605 /locus_tag="Dhaf_1375" /db_xref="GeneID:7258345" CDS 1483012..1483605 /locus_tag="Dhaf_1375" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sed:SeD_A1350 putative periplasmic phosphate-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457867.1" /db_xref="GI:219667432" /db_xref="GeneID:7258345" /translation="MRIRIIKLRKTVMRITAGLVLAMIPLLIQGCTKTGNAEGPVPSQ LPAAQKSVVQTVTPTPSEDAASIGITAENYPRIDGSTSTLPLVQRIYKRMFLHVDGGG DGWPGLPQKASKTMRSYEMLIAGDVDLILVPDPSQEIRQMAESSGTELEYIPVGAEAL VFVTHKDNIVNNITASQVQREVAISELGALKTLYESP" sig_peptide 1483012..1483104 /locus_tag="Dhaf_1375" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.832 at residue 31" gene 1483690..1484211 /locus_tag="Dhaf_1376" /db_xref="GeneID:7258346" CDS 1483690..1484211 /locus_tag="Dhaf_1376" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457868.1" /db_xref="GI:219667433" /db_xref="GeneID:7258346" /translation="MNQREIASIGCKLIGIFFIVQGTSLLSLNVPVTANMIVDYTLIN LVYSLITILFGILLWCFSDKLAKILVKEKNRNETVGLGANELQRIGFSVLGLYFIGNS LPELVTKSASLHTSGYGLPEPTGLRILFLGGPITELLIGIGIFLGSQGLVNLLSLIRT AGLKRERDSELEE" gene 1484290..1484817 /locus_tag="Dhaf_1377" /db_xref="GeneID:7258347" CDS 1484290..1484817 /locus_tag="Dhaf_1377" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: amt:Amet_1436 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002457869.1" /db_xref="GI:219667434" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7258347" /translation="MEFYIRPIEIGDGKGINELRRMPGVFENILGIPSEQLKRNEDFI ANLDANQHQFVAVARSQDGQEVIIGHAGLTVYPNQRLRHSGGIGIMIHKDYQNQGVGS ALLGRLVDVADNWLMLVRIELTVFADNARAIHLYERFGFEKEGVKRLAAIRNGKYEDE YLMARINRSNYNPQS" gene 1484839..1485051 /locus_tag="Dhaf_1378" /db_xref="GeneID:7258348" CDS 1484839..1485051 /locus_tag="Dhaf_1378" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457870.1" /db_xref="GI:219667435" /db_xref="GeneID:7258348" /translation="MPEWFNISLWIFGLLAGIVLYTLTYSRRYIGWVRERLPMPDEKI KLMERSGGIILATLSVLSLLKLLLIG" gene 1485163..1485546 /locus_tag="Dhaf_1379" /db_xref="GeneID:7258349" CDS 1485163..1485546 /locus_tag="Dhaf_1379" /inference="similar to AA sequence:KEGG:BC2802" /note="KEGG: bce:BC2802 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457871.1" /db_xref="GI:219667436" /db_xref="GeneID:7258349" /translation="MAIKRNRWAYLILVGVTIMLGLSSRQFSGYLPGAINLYLGDALW ALMVFFIFCFIFRSKGTGWLAAVALLFAFGIEISQLYHAPWIDAIRQTRLGGLVLGYG FLWRDLVAYTIGAAVGAVIDRQINS" sig_peptide 1485163..1485249 /locus_tag="Dhaf_1379" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.683) with cleavage site probability 0.569 at residue 29" gene 1485619..1486263 /locus_tag="Dhaf_1380" /db_xref="GeneID:7258350" CDS 1485619..1486263 /locus_tag="Dhaf_1380" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cbk:CLL_A2693 TetR-family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002457872.1" /db_xref="GI:219667437" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258350" /translation="MARNKYPEVTINRILDTAMKLFMSKGYEHTTIQDIIDGLGDLSK GAIYHHFNSKEEIMDAVNKRLAEQGIADIKTIAHERSLSGLDKLCKMLVFSIQSAQHE ALDQTVPPFLRNPQLLALHMRDTMGSAADLLTGVIEEGIRDGSIHTAQPRQLAQMILL FFNVWFNPWMYSWTPNELKDIISFARNVFEEIGVPIVTEEVLQSIGELHSLSQK" gene 1486362..1487585 /locus_tag="Dhaf_1381" /db_xref="GeneID:7258351" CDS 1486362..1487585 /locus_tag="Dhaf_1381" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_2619 predicted transporter, permease component" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457873.1" /db_xref="GI:219667438" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258351" /translation="MSIDSSNGKQPWKRNFFTITIGQTISIVGSSAVQFTLIWWIASN TSSPLMLAMAGLFAFLPQLLLGPFAGVWVDRLKRKTVIICADLFIGMVAAVYALILIV VNPPFWSACAVLGIRAIGSVFHTPAIQSVIPLLVPEKELVRVNGWSQFAQTGALMLGP VLGAALYAIFPLPIVLLSDLVGALLASIAVAAVKIPELKKEKQLAPNFRKEMHEGVAV FQRDKKLCIVTLAAALSMVFYMPLSSFFALMASDYFKASAWHASIVQFGYSGGMMLCA LLIGAYGRIKKKLFVVHIGLLGLGLTAFFCGLLPQNESAFWLFAALCTFMGASGNLYN IPYIAYMQEKIPREVQGRAFSIMSSFMSATMPLGLLIAGPVAEIYGVKFWFYLTGIAF FIITSISFLLVVSQP" gene 1487701..1488369 /locus_tag="Dhaf_1382" /db_xref="GeneID:7258352" CDS 1487701..1488369 /locus_tag="Dhaf_1382" /inference="protein motif:PFAM:PF02588" /note="PFAM: protein of unknown function DUF161; KEGG: cdf:CD1022 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF161" /protein_id="YP_002457874.1" /db_xref="GI:219667439" /db_xref="InterPro:IPR003740" /db_xref="GeneID:7258352" /translation="MSLWKRLVYLFLGTFLLSVGIVMTMKANLGYAPWDVFHRGTADT VGMTIGNVSIVASLVISIIVVLLGEKLGFGTIFNIFAIGIYIDLLLPLKLIPEMQSFI PGMVMLILGLFLCAFSSYLYIASGFGAGPRDSLMVALERKTKLSIGLCRGIIEVTVCL IGWIFGGPVGIGTVISAFGIGICVQMVFAWVKFDATSVKHETIDETVKNLKGFYKKSV GEDA" sig_peptide 1487701..1487781 /locus_tag="Dhaf_1382" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.883) with cleavage site probability 0.354 at residue 27" gene complement(1488375..1489505) /locus_tag="Dhaf_1383" /db_xref="GeneID:7258353" CDS complement(1488375..1489505) /locus_tag="Dhaf_1383" /EC_number="2.5.1.48" /inference="protein motif:PRIAM:2.5.1.48" /note="PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mta:Moth_1989 cysteine synthase / cystathionine gamma-synthase" /codon_start=1 /transl_table=11 /product="Cystathionine gamma-synthase" /protein_id="YP_002457875.1" /db_xref="GI:219667440" /db_xref="InterPro:IPR000277" /db_xref="GeneID:7258353" /translation="MNILTELAQIGNRRDPYGAISFPVYHSSTFAHPGFGQSTGFDYS RTGNPTRQALEDAMASLEEGTKGFAFSSGMGAITTILSLFSQGEHLLVTEDLYGGTYR ILEEVFSRFGLQVTFVDSSDLDTIAKEIRPHTKAIFTETPTNPLMKIADLKGIASLCQ KHGLLNIVDNTFLTPYLQKPLNLGADIVIHSGTKYLGGHNDVVAGLVVVQGEELAARF GRLQNSLGATLGPQDSWLIIRGLKTLALRMRAQEENALQIAQWLETHPLVTAVCYPGL KHHPGYATQLEQARGFGAMLSFRVKSPSLIPEILKSLKIISYAESLGGVESLITYPAT QTHADIPHEVRTRLGVDDCLLRLSLGIEAAEDLIGDLEQALK" gene 1489968..1490324 /locus_tag="Dhaf_1384" /db_xref="GeneID:7258354" CDS 1489968..1490324 /locus_tag="Dhaf_1384" /inference="similar to AA sequence:KEGG:Clos_1799" /note="KEGG: aoe:Clos_1799 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457876.1" /db_xref="GI:219667441" /db_xref="GeneID:7258354" /translation="MTIEGILVYSILLFIIIFLAVRLAIQPLIKNANNVAVNEEGELS LVKLQAIGVLDNHELEEVIQFYNQKKVSSKKMKELERYTKVLSELVRQGILTQEEYSR KMEKLRNYYFSDNSKA" gene 1490375..1491178 /locus_tag="Dhaf_1385" /db_xref="GeneID:7258355" CDS 1490375..1491178 /locus_tag="Dhaf_1385" /inference="protein motif:PFAM:PF06508" /note="PFAM: ExsB family protein; PP-loop domain protein; KEGG: chy:CHY_1281 hypothetical protein" /codon_start=1 /transl_table=11 /product="ExsB family protein" /protein_id="YP_002457877.1" /db_xref="GI:219667442" /db_xref="InterPro:IPR004479" /db_xref="InterPro:IPR005232" /db_xref="InterPro:IPR011063" /db_xref="GeneID:7258355" /translation="MQAKLNHLKQIIKEMEAVVVAFSGGVDSTFLLKVAHETLGDHCL AVIGASETMPSADYNNALQQAKEFGAKFLVIETEEMGKEEFVKNPQNRCFHCKNELFT KLLGIAQEKKINWVLDGSNADDLKDYRPGMQAARALGIRSPLQEAGLSKEEIRQLSKK MGLSTWDKPSSPCLSSRFPYGEEITIEKLRRVEQAEALLKELGFTNLRVRYHQDMARL EIPKKDFLKLMELDHDTIVKPLKELGFTYVTLDLEGFRSGSLNEGIQIL" gene 1491496..1492524 /locus_tag="Dhaf_1386" /db_xref="GeneID:7258356" CDS 1491496..1492524 /locus_tag="Dhaf_1386" /EC_number="1.1.1.3" /inference="protein motif:PRIAM:1.1.1.3" /note="PFAM: oxidoreductase domain protein; homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: bcy:Bcer98_3923 homoserine dehydrogenase" /codon_start=1 /transl_table=11 /product="Homoserine dehydrogenase" /protein_id="YP_002457878.1" /db_xref="GI:219667443" /db_xref="InterPro:IPR000683" /db_xref="InterPro:IPR001342" /db_xref="InterPro:IPR005106" /db_xref="GeneID:7258356" /translation="MKENTVKIGLLGCGNVGQGVIKGILLHSNKILRKLGATLVVSKA LVQDISKERAIEGVVLTQKPQDILDDPEIEVVVEVMGGEHPTYSFIKEALAKGKHVVT ANKLLLALHGAELQEIAQRKGICLLYEGSVLGGIPILRTIQYGLAGDQVKKICGILNG TTNYILTQMAESGKGYEEALREAQEAGYAESDPTMDVTGLDAACKLVILCRECFELNI PLEEVEINGIQGLTPEEVAEQKEQGRVPKLVAEAAIIEHSSSEPEKRREGIRAKVSVQ WLSGEAILSHVSGVDNGLSLETQLVGDLFWKGPGAGGLATGGAVLSDIVEIAKKVVVE RRIGNAAR" gene 1492872..1493576 /locus_tag="Dhaf_1387" /db_xref="GeneID:7258357" CDS 1492872..1493576 /locus_tag="Dhaf_1387" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbf:CLI_3619 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457879.1" /db_xref="GI:219667444" /db_xref="InterPro:IPR000577" /db_xref="GeneID:7258357" /translation="MEEPTYSAMLVTDPEQTPQQRIQQQRANYAAYVKKVKTAAANPS ETDRGAVKEETPQPVTTEQTGQLFRVTTNPYVPAFILQGNYVVHGSSPNKQFTAYIYP DEWETIGDIYIKDNVSNRWTRLQINQENRIKMWNSFAPEGKYTPKKKILWLNDQEFIT IIGLAYGTIAKGGELVKVTPATGEAETLYPAYQKLNQEVIDFEQVEEELIITIDHLDA NGFCLEKEEMRVPLFD" gene 1493745..1495910 /locus_tag="Dhaf_1388" /db_xref="GeneID:7258358" CDS 1493745..1495910 /locus_tag="Dhaf_1388" /inference="protein motif:PFAM:PF00575" /note="PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: cth:Cthe_1955 RNA binding S1" /codon_start=1 /transl_table=11 /product="RNA binding S1 domain protein" /protein_id="YP_002457880.1" /db_xref="GI:219667445" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR006641" /db_xref="GeneID:7258358" /translation="MEFAESIAQELSLRAHQVKEAIQLLDAGNTIPFIARYRKEATGE LDENALRSIVERLEYLRNLKQRKSEVLRLIEEQGKLTDELAEQIQNASILQEVEDLYR PYKQKRRTRATIAKEKGLEPLALWILEQYPKAQPLEEAQKYINPELGVETSEEAISGA SDILAEMISDDAAMRKRIREATFRFGDIAASAKKAEERSPYEMYYDYREPVKKLPPHR ILALNRGEKEEVLSVKVDVPTERMLALLEQAYVKHGPAAEIVRNAADDSYKRLIAPSI EREIRGALTEKAEEQAIKVFAENLKQLLLQPPVRGKVVLGLDPGFRTGCKFAVVDDTG KLFHVGVIYPHPPQNKREEAKKVLRDTIAKYQVEVIAIGNGTASRETEEVTAEMIRES DLASEYIIVSEAGASVYSASKLAGEEFPDFDLSLRSAVSIARRLQDPLAELVKIEPKA VGVGQYQHDVQPKRLEESLHGVVESAVNAVGVDLNTASPSLLQYVAGLKPTIAKNIVA FRESNGKFQKREQLKKVPRLGEQTFVQCAGFIRIPEGANPLENTPVHPESYELAQNIL HKAGFTIMDLKERPNEVRLGIARLNPEECAREFSAGVPTVKDILAALQRPGRDPREDL PRPKLRQDVTHLEDLKTGMILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHP MEVLSVGDIVKVRVLGIDTARERVSLSMKEIAADAMVSI" gene 1495963..1497132 /locus_tag="Dhaf_1389" /db_xref="GeneID:7258359" CDS 1495963..1497132 /locus_tag="Dhaf_1389" /inference="protein motif:PFAM:PF01979" /note="PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tte:TTE0530 imidazolonepropionase and related amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_002457881.1" /db_xref="GI:219667446" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7258359" /translation="MKAKTSLFIRDGLIKTMKGQEFIGGILVEGTQIKALGENLVAPE GAEIIEAHGKLILPGFIDAHCHVGLGEEIYQNEGDDLNEMTDPVTPELRAIDGINPED EGLRDARLGGVTAVFSTPGSGNVIGGTGVVLKTVGKVVDKMIVREPAGLKVAFGENPK MVYGGEQKKMPMTRMATAALLRQALVDAETYLEKLEQGIEDPEKVPERDLGMESLIRV IKREIPLRAHAHRADDIMTAIRIAKEFNVDLVIEHCTEGHKIAEEIAEYGYPAVVGPS LVNRAKVELKDKSFETPHVLTQAGVKVAIITDHPVTPIEQLSLCAALVARAGMDEEEA LKAITINPAEILGVDHRLGSLEVGKDADIVIWSEHPFVLKSRPETVIINGKVITD" gene 1497238..1497741 /locus_tag="Dhaf_1390" /db_xref="GeneID:7258360" CDS 1497238..1497741 /locus_tag="Dhaf_1390" /inference="protein motif:PFAM:PF02367" /note="PFAM: protein of unknown function UPF0079; KEGG: cbe:Cbei_0469 protein of unknown function UPF0079" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0079" /protein_id="YP_002457882.1" /db_xref="GI:219667447" /db_xref="InterPro:IPR003442" /db_xref="GeneID:7258360" /translation="MELEVQSLSADYTHALGYNLGKVLRGGDVVCLAGDLGAGKTALA KGIGEALAVQEPMTSPTFTFQIEYSGMAQDSPVRLIHMDLYRLRYPEEVEIIGVEDAF QEDAICLIEWPGIAEDILPDDSLAIRIEGSGEEPRLIGFSSQAEAWAERLKDIITEIN LVNPFEY" gene 1497750..1498466 /locus_tag="Dhaf_1391" /db_xref="GeneID:7258361" CDS 1497750..1498466 /locus_tag="Dhaf_1391" /inference="protein motif:PFAM:PF00814" /note="PFAM: peptidase M22 glycoprotease; KEGG: hmo:HM1_1718 glycoprotease family protein" /codon_start=1 /transl_table=11 /product="peptidase M22 glycoprotease" /protein_id="YP_002457883.1" /db_xref="GI:219667448" /db_xref="InterPro:IPR000905" /db_xref="GeneID:7258361" /translation="MKYLTIDTTTKVTALALADDGQLVAEGFLHTSKTHSERLIPVLD QVLEASAWKLQDLDFIGVVRGPGSFTGIRIGIATAQGLAQVLKLPLIGVLSLDSLAWA GHSRKEEIVPILDARKNEWYTAQYRWSEREEIPIRSREPFAVEPALWLKELAEQGKPI VFVGDAVSRYQEKIKAILGDKAVLLPDYLALPRGAYTVRCVWNEWQKGSQEKLVEPYY IRLSEAETNWAKKEEAQKGK" gene 1498463..1498909 /locus_tag="Dhaf_1392" /db_xref="GeneID:7258362" CDS 1498463..1498909 /locus_tag="Dhaf_1392" /inference="protein motif:TFAM:TIGR01575" /note="TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: mta:Moth_2158 SSU ribosomal protein S18P alanine acetyltransferase" /codon_start=1 /transl_table=11 /product="ribosomal-protein-alanine acetyltransferase" /protein_id="YP_002457884.1" /db_xref="GI:219667449" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR006464" /db_xref="GeneID:7258362" /translation="MMIRPMQESDLSTILEIEHACFPAPWAPQSFVSELRDNEYARYF CLEHEGNIIGYMGLWFILEEGHITNVAVAPGYQGMGGGEFLMRSVIDLMVKEGMERMT LEVRASNTSAQRLYERLGFVTAGVRKGYYSDNREDALIMWLDIGKD" gene 1498939..1499958 /locus_tag="Dhaf_1393" /db_xref="GeneID:7258363" CDS 1498939..1499958 /locus_tag="Dhaf_1393" /EC_number="3.4.24.57" /inference="protein motif:TFAM:TIGR00329" /note="in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity" /codon_start=1 /transl_table=11 /product="putative DNA-binding/iron metalloprotein/AP endonuclease" /protein_id="YP_002457885.1" /db_xref="GI:219667450" /db_xref="InterPro:IPR000905" /db_xref="InterPro:IPR017861" /db_xref="GeneID:7258363" /translation="MNNKDINILGIETSCDETSAAVLRNGCELLSHIISSQIKTHQKY GGVVPEVASREHILHLQSVVEQALQEAKMGFGDLAGIAVTYGPGLVGSLLVGVAGAKA MAYGAGIPLLGVNHLEGHIYANFLHNPGLKFPLLALLVSGGHSHLVYFEGHGKYQVLG QTRDDAAGEALDKVARTLGLGYPGGPYIQKAALEGNPHAYEFPRAMLEPGSLDFSFSG VKSAVLNTLNSARMKGETVNVADVAASFQEAIVDVLVRKTLLALARTKAPTLVLAGGV AANTLLRERLTEATQKRGIAFSYPPPILCTDNGAMIATAGYYRYLDKDYAPWNLNAIP GLNLA" gene 1500491..1501417 /locus_tag="Dhaf_1394" /db_xref="GeneID:7258364" CDS 1500491..1501417 /locus_tag="Dhaf_1394" /inference="protein motif:PFAM:PF03956" /note="PFAM: protein of unknown function DUF340 membrane; KEGG: nth:Nther_2478 protein of unknown function DUF340 membrane" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF340 membrane" /protein_id="YP_002457886.1" /db_xref="GI:219667451" /db_xref="InterPro:IPR005642" /db_xref="GeneID:7258364" /translation="MWVLFVCLIAGAFVGWFRLLPKAVLNQAGRGMMIGVLILLLTMG LRIGVDQDTLSQLGNFGLQAFLFAVAAIIGSVVAVLLLERAFIGKAGMVPQQDKLEVD STETTHPYRMTFTIIGAFIAGVFGGMIFFPQVWTVYLPTITTLALDFTLVMVGIDLGL NRDIWRHMLKVGWQVFLAPVGVVLGSIAAAMLVGLCFGWNLREGGAVGAGFGWYSLSG VLISDLHSVSLGTIAFLSNIFREVLAIIFAPFLARRVGPLALVAPSGATAMDSTLPLL VAVGPKGVSIVAIISGLSLSLLVPVLVPLVLG" gene 1501561..1502163 /locus_tag="Dhaf_1395" /db_xref="GeneID:7258365" CDS 1501561..1502163 /locus_tag="Dhaf_1395" /inference="protein motif:PFAM:PF01812" /note="PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: amt:Amet_4132 5-formyltetrahydrofolate cyclo-ligase" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase" /protein_id="YP_002457887.1" /db_xref="GI:219667452" /db_xref="InterPro:IPR002698" /db_xref="GeneID:7258365" /translation="MKEDGKVSEEKRLLREHVLSLRSALTPEERASKSQRIRAIVTQT REFQEAGTIMLFMNFRDEVETTELAQKVLDLGKRLVLPRCAPKGVLIPALIGDLAKDI ESGMWGIREPKKQELTEVDPLEIDGIFVPGAAFDGQGNRLGYGGGYYDRFFERVREGT PKIALAFHCQIVDRIPVEVYDKKVDMLITEQGAMRFKETL" gene 1502192..1502674 /locus_tag="Dhaf_1396" /db_xref="GeneID:7258366" CDS 1502192..1502674 /locus_tag="Dhaf_1396" /inference="protein motif:PFAM:PF01257" /note="PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: chy:CHY_0731 Fe-hydrogenase, gamma subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (ubiquinone) 24 kDa subunit" /protein_id="YP_002457888.1" /db_xref="GI:219667453" /db_xref="InterPro:IPR002023" /db_xref="GeneID:7258366" /translation="MCEECKELVDPKEEQLEQILAHHKREKGALIPVLQEAQGLYGYL PEHVIKHISRGLGIPSAKVYGVVTFYAQFRLTPMGRNVISVCLGTACHVRGGAKVLEA IEKDTKIKDGQTTEDGRFTLEIVNCIGACGLAPVMSINGNVHGRLNADQIPGILAEYK" gene 1502686..1504479 /locus_tag="Dhaf_1397" /db_xref="GeneID:7258367" CDS 1502686..1504479 /locus_tag="Dhaf_1397" /EC_number="1.6.99.5" /inference="protein motif:PRIAM:1.6.99.5" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (quinone)" /protein_id="YP_002457889.1" /db_xref="GI:219667454" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR001949" /db_xref="InterPro:IPR011538" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258367" /translation="MNTEAKKQVFICAGTGCISSGANTIIDLINVEIERRGLAKDVEL IATGCRGFCEQGPTLVIEPAQRFYRRIQPEDIPELVEKELAQGEKVERLFYVDPQSGE PALSYEDISFFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMDPEAIVEEVK ESGLRGRGGAGFSTGLKWSLCRATPSDKKYVICNADEGDPGAFMDRGLLEGDPHAIIE GMLIGAYAIGADEGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKIN AGAGAFVCGEETALMASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILR NGAQWYAQYGTEKSKGTKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGGGIKDGGKFK AVQIGGPSGGCLPEDMLDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFS QSESCGKCTPCREGNKRMWEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAP NPILATLKYFREEFEEHIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISG NKNTPYVIDGERCIRCGSCMDSCKFGAVIRA" gene 1504497..1507178 /locus_tag="Dhaf_1398" /db_xref="GeneID:7258368" CDS 1504497..1507178 /locus_tag="Dhaf_1398" /inference="protein motif:TFAM:TIGR01591" /note="Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: chy:CHY_0733 NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing" /codon_start=1 /transl_except=(pos:1505553..1505555,aa:Sec) /transl_table=11 /product="formate dehydrogenase, alpha subunit" /protein_id="YP_002457890.1" /db_xref="GI:219667455" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006478" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258368" /translation="MEWLNLTIDEKEVVVPKGSTVLEACRMYDIPIPTLCQDPELTNA GACRLCIVEIAGMRNLPPSCVTQVTQGMVVKTQTPKVRKSRKVILELLVANHPLDCMT CQKMGDCALAQYAYEYGVTGEDYRGERRELPLDDSNPFILRDPNKCILCGKCVRACEE IQGRSVLDFFKRGFDSQVGPAFDVPYSESECVFCGSCVSVCPVGALVEKKMVGQARAW NIEKVQTTCPFCGTGCNFDLNVSNGKVIGVTSNPESPVNGKALCVKGRFGMDLIHSPQ RLTTPLIKKDGEFVPAGWDEALDLIAAKFSQIKEDYGPDSFAALSSARCTNEENYLMQ KFMRAVIGTNNVDHCARTUHAPTVAGLATSFGSGAMTNSINEIPNAEVMFVIGSNTTE AHPIIGTKMKQALARGAKLIVADPREIELARDAHIWMRLKPGTDIALINGIMNIIVEN GWEDRAFIEERTEGYQELRENLKKFPPEEVSKITGVPVELMAEAARLYTSVERAQIFY TLGITEHVCGTDNVMSLANLAMLTGNIGKESSGVNPLRGQNNVQGACDMGALPNVYPG YQSVTNPEARAKFEEAWGVSLNPNQGFMIPDMFDSAVKKELRAMYIMGEDPVLTDADA NHVRKGLKALDFLVVQNIFMSETAELADVILPGASFAEKDGTFTNTERRVQRVNRAIK PIANTKADWEIICELSNRMGYPMAYPSPAEIMLEVASLAPQFAGVTYERLGKKGLQWP VPHAEHPGTKFLHQGKFTRGKGVFTVIEHQLPDELPDEEYPFLLTTGRKLQHYNISTR FSAALDEHAPEELAELNPKDARRLGIQDGEKIKVVSRRGEVVTKVWVTKRVPPGVLFM TLHYRESPTNVLTNGAYDKVTKTYEYKVCGVRVEALK" gene 1507441..1508064 /locus_tag="Dhaf_1399" /db_xref="GeneID:7258369" CDS 1507441..1508064 /locus_tag="Dhaf_1399" /inference="similar to AA sequence:KEGG:SYN_00482" /note="KEGG: sat:SYN_00482 molybdopterin-guanine dinucleotide biosynthesis protein A" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein A" /protein_id="YP_002457891.1" /db_xref="GI:219667456" /db_xref="GeneID:7258369" /translation="MGADYGQTLLPMTGIILAGGKSSRMGCNKAFIEWDGAPLIEHSL AVFNAVFAEVMISSNHPELYADYGVKVIKDNYPDHGPLGGLEACLREARYDHAFFAAC DMPFLNTKVIRFMAGEIEGESILVPEIEGVVHPLHAFYHKNCLPLLAESLKAKHLKLT KLVQQYSRVRYLREKDFRDFPAIHLFLSNMNTPQECLELRQHNSHSI" gene 1508464..1509435 /locus_tag="Dhaf_1400" /db_xref="GeneID:7258370" CDS 1508464..1509435 /locus_tag="Dhaf_1400" /inference="protein motif:TFAM:TIGR02666" /note="KEGG: hmo:HM1_0064 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein A" /protein_id="YP_002457892.1" /db_xref="GI:219667457" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010505" /db_xref="InterPro:IPR013483" /db_xref="GeneID:7258370" /translation="MQDQYRRQIEYLRISITDRCNLRCKYCMPAEGVQWIPHERILTY EEILRVMRISTTLGFRRFRITGGEPLIRSGVLEFLQNASQIPGVEDLMLTTNGILLAD MAEDLKKAGVNRVNISLDTFNEDRFRELTRGGDIKKVFQGIHRSLEVGLHPVKLNVVV VRDFNSHELPRFMELARDYPLHVRFIELMPIGISSDKRSDFVSIDEMKAILGLEGLKA THDIQGGGPAEYITSEGFKGSVGFISAISKHFCSTCNRIRLTPDGKLRLCLHSSKEVD FREVLRSNKSDNEVRDVFAQAIWNKPAEHHMNDQAWQDQRIMSQIGG" gene 1509438..1509929 /locus_tag="Dhaf_1401" /db_xref="GeneID:7258371" CDS 1509438..1509929 /locus_tag="Dhaf_1401" /inference="protein motif:TFAM:TIGR00581" /note="TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: hmo:HM1_0063 molybdenum cofactor biosynthesis protein C" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein C" /protein_id="YP_002457893.1" /db_xref="GI:219667458" /db_xref="InterPro:IPR002820" /db_xref="GeneID:7258371" /translation="MELTHFDEEGRARMVDVSAKAETTRVATARGKVEMQAETLERIR SGQIAKGDVLAVAQVAGIMAAKQTSNVIPMCHPLAITGAKLNFEIVPPGTIEIEGIVK VTGKTGVEMEALTAVSVAALTIYDMCKAIDKTMVISDIRLMEKTGGKSGHFIREDHLK STT" gene 1509973..1510407 /locus_tag="Dhaf_1402" /db_xref="GeneID:7258372" CDS 1509973..1510407 /locus_tag="Dhaf_1402" /inference="protein motif:PFAM:PF03473" /note="PFAM: MOSC domain containing protein; KEGG: drm:Dred_2266 MOSC domain-containing protein" /codon_start=1 /transl_table=11 /product="MOSC domain containing protein" /protein_id="YP_002457894.1" /db_xref="GI:219667459" /db_xref="InterPro:IPR005302" /db_xref="GeneID:7258372" /translation="MAKIIAVCTSEKKGMRKKNVGEGVLKVNFGIEGDAHGGDWHRQV SLLAMESIKKMQDMGLDVGPGDFAENLTTEGIDLVSLPLGTKLKIGETGVGEVTQIGK ECHTRCAIYYQAGDCVMPKEGIFIRVLEGGPINVGDSVEVME" gene 1510407..1510907 /locus_tag="Dhaf_1403" /db_xref="GeneID:7258373" CDS 1510407..1510907 /locus_tag="Dhaf_1403" /inference="protein motif:TFAM:TIGR00177" /note="TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: hmo:HM1_0061 molybdenum cofactor biosynthesis protein, putative" /codon_start=1 /transl_table=11 /product="molybdenum cofactor synthesis domain protein" /protein_id="YP_002457895.1" /db_xref="GI:219667460" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR008284" /db_xref="GeneID:7258373" /translation="MLRVGVITASDKGSQGQREDLSGAVLKELVKEIDGEVVLYTILP DDQELLAQTMKKWADEEGLDLILTTGGTGFSLRDVTPEATTAIADRMVPGIAEVMRYE SYKITPKAMLSRAVAALRKQTLIINMPGSPKACKECWAALVPALPHGIQILKGEASEC AVPVHQ" gene 1510967..1511857 /locus_tag="Dhaf_1404" /db_xref="GeneID:7258374" CDS 1510967..1511857 /locus_tag="Dhaf_1404" /inference="protein motif:PFAM:PF01936" /note="PFAM: protein of unknown function DUF88; KEGG: sth:STH42 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF88" /protein_id="YP_002457896.1" /db_xref="GI:219667461" /db_xref="InterPro:IPR002790" /db_xref="GeneID:7258374" /translation="MSLLSFSCVLYSKGKWKWGDIVLKAIAFIDYENIWTGLFEQGYE LTPEILMESIQLYAKQNDYVLSAIYLYANFDREEFWRAQTSFEKIHVYTRHVYGKNNF ASTGLRRNAADVELILEAQEILLTRTATFDVFLLLTGDGDFLPLLRKVRAWGKDVKVI GVKGSMHHELQAFSDSGDFFGEFLPQERPQEYEPEKDLEQAISIIAQLQLSMTYIAST KARLTLSDHLGVTISQVKELIRYALREGILLEQEYADSSLKIGKTKVYLLNLDHSMVQ VVLGSAIEEIRKRYEKLRTH" gene 1512257..1512541 /gene="groES" /locus_tag="Dhaf_1405" /db_xref="GeneID:7258375" CDS 1512257..1512541 /gene="groES" /locus_tag="Dhaf_1405" /inference="protein motif:PFAM:PF00166" /note="10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring" /codon_start=1 /transl_table=11 /product="co-chaperonin GroES" /protein_id="YP_002457897.1" /db_xref="GI:219667462" /db_xref="InterPro:IPR001476" /db_xref="GeneID:7258375" /translation="MNIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVG PGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVIG" gene 1512641..1514275 /gene="groEL" /locus_tag="Dhaf_1406" /db_xref="GeneID:7258376" CDS 1512641..1514275 /gene="groEL" /locus_tag="Dhaf_1406" /inference="protein motif:TFAM:TIGR02348" /note="60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth" /codon_start=1 /transl_table=11 /product="chaperonin GroEL" /protein_id="YP_002457898.1" /db_xref="GI:219667463" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR012723" /db_xref="GeneID:7258376" /translation="MAKQIVFNEEARRALERGVNALAESVRVTLGPKGRNVVLDKKFG APLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREG LKNVAAGANPMGIKRGIEKAVESVVEDIKTNAKPIESKESIAQVASISAGDDNIGVLI SDAMEKVGKDGVITVEEAKGMTTELKVVEGMQFDRGYLSAYMITDTDKMEAILNDPYI LITDKKIGAIADILPVLEKVVQAGRQLLIIAEDIEGEALATLILNKLRGTFTCVAVKA PGFGDRRKAMLEDIAILTGGTVITEDLGLKLENTTIDMLGRARQIRVTKEETTIVEGS GSQDDIKSRVEAIKKQIDETTSDFDREKLQERLAKLAGGVAVIQVGAATEVEMKEKKL RIEDALAATRAAVEEGIVAGGGCALVDAAKALDSLKLTGDEKTGVAIVCRALEEPLRQ IANNAGFEGSIVVEKVRNGGRGVGFNALTEAYEDMIAAGIVDPAKVTRSALQNAASIA AMLLTTECLVSDIPSKDNGAAAMAGMGGMGGMGGMM" gene complement(1514420..1514761) /locus_tag="Dhaf_1407" /db_xref="GeneID:7258377" CDS complement(1514420..1514761) /locus_tag="Dhaf_1407" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: wol:WD0626 transcriptional regulator, putative" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457899.1" /db_xref="GI:219667464" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258377" /translation="MEAIKLRVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGT NSIDISTLLNICNFLEINLDDIYGISDKKISPVELTEDELALISNFRKLSHDNKMKVL GMVELKAAEDV" gene 1515479..1515739 /locus_tag="Dhaf_1408" /db_xref="GeneID:7258378" CDS 1515479..1515739 /locus_tag="Dhaf_1408" /inference="similar to AA sequence:KEGG:YPK_0890" /note="KEGG: ypy:YPK_0890 putative relication initiation protein" /codon_start=1 /transl_table=11 /product="putative relication initiation protein" /protein_id="YP_002457900.1" /db_xref="GI:219667465" /db_xref="GeneID:7258378" /translation="MRIDINEKYCITSDEYQYILNTKSVSNGKKIKGQKELKAVAYCS DLNHCLKELVKRQIRESDCTSLRDVAKRIEEIRSEINRTVNF" gene 1515863..1516291 /locus_tag="Dhaf_1409" /db_xref="GeneID:7258379" CDS 1515863..1516291 /locus_tag="Dhaf_1409" /inference="protein motif:TFAM:TIGR01636" /note="TIGRFAM: phage transcriptional regulator, RinA family; KEGG: lwe:lwe1219 phage-related transcriptional activator" /codon_start=1 /transl_table=11 /product="phage transcriptional regulator, RinA family" /protein_id="YP_002457901.1" /db_xref="GI:219667466" /db_xref="InterPro:IPR006523" /db_xref="GeneID:7258379" /translation="MEERIEKHIHQYVEAELRNYRTYKKLIGEYDKELLYRGAKSGLG KDPTGRFSQNRISDPTYDEVAGVIANEQRVRRMKDVVMCIEDVLEELSEEEARLVEMK YFKSCYTDFGIIGELHIGQTKYYGDKKRIIRKFALRMRLI" gene 1516492..1516653 /locus_tag="Dhaf_1410" /db_xref="GeneID:7258380" CDS 1516492..1516653 /locus_tag="Dhaf_1410" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbo:CBO1731 phage protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457902.1" /db_xref="GI:219667467" /db_xref="GeneID:7258380" /translation="MAYQRTTALPGCRPEKKNGWAEGRFMMNISMQEMDQEMPKYPAK RAMGQIMND" gene 1516674..1517141 /locus_tag="Dhaf_1411" /db_xref="GeneID:7258381" CDS 1516674..1517141 /locus_tag="Dhaf_1411" /inference="similar to AA sequence:KEGG:CBO1732" /note="KEGG: cbo:CBO1732 phage protein" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002457903.1" /db_xref="GI:219667468" /db_xref="GeneID:7258381" /translation="MSAITVNGVRDSVMTILHQHFPGISVYSEEIRQGFDKPCFFVKL FPVSQNQLLGRRYQRNHSFDIGYFPVVVDEGEGEGNRQNQDMHDVAEQLYEAMELIPV VDESDGLMRGTKMGHEIVEGVLHFYVDYNFQVIKEATLEPLMQTMEQEGFIRG" gene 1517134..1517313 /locus_tag="Dhaf_1412" /db_xref="GeneID:7258382" CDS 1517134..1517313 /locus_tag="Dhaf_1412" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457904.1" /db_xref="GI:219667469" /db_xref="GeneID:7258382" /translation="MARKDELIEKVYSKLQILQSKQFTAQQRDVLEALLQDGANYTKS EVISISEDFRTKEAK" gene 1517316..1518632 /locus_tag="Dhaf_1413" /db_xref="GeneID:7258383" CDS 1517316..1518632 /locus_tag="Dhaf_1413" /inference="similar to AA sequence:KEGG:CBO1733" /note="KEGG: cbo:CBO1733 phage protein" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002457905.1" /db_xref="GI:219667470" /db_xref="GeneID:7258383" /translation="MAAGTFTAQNKVRPGVYINFKSEPQAAGTLGERGIVSMPLILSW GEPGKMITIEAGDDVFPKLGYSIMDAQLRLINEALKRAKTLLLYRLNAGTKAAVTVGN LTVTAKWGGARGNDITLVIQENIDDETKFDVSTLVDGAELDKQTVSDIAGLAANDWVI FSGTGALTETAGAPLINGSDGAVTNQAYIDYLAAVEIFDFNTIALPSTDDALKATFTA FAKRLRDDEGKKIQVVLENYPAADYEGVISVKNGVVLADGTILTAAQATAWVAGATAG ARVNESLTYQGYDEAVDVAPRYTNAQIIAALQAGEFLFTASDNQALVEQDINTLTSFT ADKGKQFAKNRVIRVLDGINNDFVRIFSKFYIGKVSNNADGRNLLKSECINYMNTLQD IDAIKNFDGQTDLTVQSGNDVDAVYIEAYAWPVDSIEKIYVRVRIK" gene 1518652..1519119 /locus_tag="Dhaf_1414" /db_xref="GeneID:7258384" CDS 1518652..1519119 /locus_tag="Dhaf_1414" /inference="similar to AA sequence:KEGG:CBO1734" /note="KEGG: cbo:CBO1734 phage protein" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002457906.1" /db_xref="GI:219667471" /db_xref="GeneID:7258384" /translation="MAFLRAEDAVGGKQAKAFATINGRVEELFYAKSIEATIEKNKAD VPVLGRTNVGKKAAGWTGSGTLTIYYITSLFRQLMIDYVKTGRDFYFDLQIVNEDPAS GVGKQTIVLKGCNLDSVTAASFDITSDDPLEEEMPFTFEDIDMLDQFSRPVTG" gene 1519272..1519685 /locus_tag="Dhaf_1415" /db_xref="GeneID:7258385" CDS 1519272..1519685 /locus_tag="Dhaf_1415" /inference="protein motif:PFAM:PF08890" /note="PFAM: XkdN-like protein; KEGG: cbt:CLH_0892 hypothetical protein" /codon_start=1 /transl_table=11 /product="XkdN-like protein" /protein_id="YP_002457907.1" /db_xref="GI:219667472" /db_xref="InterPro:IPR014986" /db_xref="GeneID:7258385" /translation="MSDLQDFLMDNFEEAEPIERRVSLGGKEKIMKFKPISAATGDEI RRSCRKTTFHKGQRLVETDQDAFVAKLIIETTTVPDFKSQELQQSWGVLGAENLLKAM KTKMKDGEYATFSNIVSEVNGYDKSMNDLVEEAKN" gene 1519929..1521626 /locus_tag="Dhaf_1416" /db_xref="GeneID:7258386" CDS 1519929..1521626 /locus_tag="Dhaf_1416" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbt:CLH_0893 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457908.1" /db_xref="GI:219667473" /db_xref="InterPro:IPR000577" /db_xref="GeneID:7258386" /translation="MATIDSALKMFGKMSDVADRLIEAAKVIGEPTIGAAMEQQQIMD TFSVKTGSEPLGAVIYDRITKQALGWGEDVNASLSGAMSFMSTTMDPDKLTQLNALAA RLSKLNPAEGLEGAALSMKELMSGDYTSIAEGFNMSGTMLQGSAAYQAGLQGDVDGFI KGMDELLNQQNMTEAAFEKMLDRPAAKWQRIIQTFNFSLAKAGEEAAKALSPLFDMII KGFESEGAKVFLNILSIGLTSVVTGIQWMLTMLQDGWPAIQQILLGIGTLIYNLGVIL LGLIPIIMGVVAAWVAYNAVGLIANGITFITGTLIPIVRGLMAKWNIVTLMLASGISL LALKQRLLHYVMNINPIGLVIGLVIGLITVLGALSVVTNGVKKVFSDAFGFIVDVAEG AINAVLRILNGAIRGINEVSGFFANLLGIEAKQIKEIQFKADFSEFKKAGQEAIENFS MDALKEKLGFDNKFQMQEDYGWDGSIPNIDDALSSIDHVGEVGKIGDTVDISSEDLKI MRELAEMKNIQNFVTLTPTVSVTTGDIRNGSDADTIVAKIKMMLEKDIASSASAVYG" gene 1521656..1522327 /locus_tag="Dhaf_1417" /db_xref="GeneID:7258387" CDS 1521656..1522327 /locus_tag="Dhaf_1417" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: cbo:CBO1738 phage protein" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002457909.1" /db_xref="GI:219667474" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7258387" /translation="MSYSIELSFNNRDESFELPVMPGSLDASKSGNNKTYDIIALGEI NIIKNPQRIEYGFSSIFPAQRYPFVTVQTLLQPIEYVQLIIRWMESKQPIRFIFTSDR FEINTLASIESFDWEEVAGGSGDLEYSLKLKSYVPYAAQKVPIEDLIDKSASTVAVPP PAPVRPNETKPPKTYTLVAGDTLWAVAQKHLGNGARWPEIQKLNDITDAEIRRLQIGR VLKLP" gene 1522357..1523328 /locus_tag="Dhaf_1418" /db_xref="GeneID:7258388" CDS 1522357..1523328 /locus_tag="Dhaf_1418" /inference="similar to AA sequence:KEGG:CBO1739" /note="KEGG: cbo:CBO1739 phage protein" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002457910.1" /db_xref="GI:219667475" /db_xref="GeneID:7258388" /translation="MLKIVIDNKDGNVWDISQIVADVNWKTSRIGKAGSLDFTLIKNA PAQELAFKYANGNIVHVQMEDGTNVFYGYIFSIDGGKDEAVKITCYDQLRYLMASDTS IYTNITVSELVREIAARFQLETGRIDDTKYRIPTFSEDNQKMMDMICKALDLTLINTG KNYVFFDDFGALTIRNVEDFLLDFIIGDHSLMTDFSHKVSIDSDTYNVINLYKDNKET GKREPYEKPCSANIAKWGVLQLCQSIDEEMNEAQISEMLKNLLTLKNRETKSLKIEAL GDIRVRGGCYVRIQIAEYGINQPFLVDECTHRFDGVNHTMSLELRVI" gene 1523359..1523718 /locus_tag="Dhaf_1419" /db_xref="GeneID:7258389" CDS 1523359..1523718 /locus_tag="Dhaf_1419" /inference="similar to AA sequence:KEGG:CBO1740" /note="KEGG: cbo:CBO1740 phage protein" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002457911.1" /db_xref="GI:219667476" /db_xref="GeneID:7258389" /translation="MSSLLDLIKAAGADAVNASNPVNILFGEILTVHPLSVKVDQRFI LPADFLMVPERMTKYEVDLQHTHQYTDDGSTSDTSEALTQRIVIRSGLAPGDRVLMLR VQGGQRYVILDKVVVSL" gene 1523715..1524116 /locus_tag="Dhaf_1420" /db_xref="GeneID:7258390" CDS 1523715..1524116 /locus_tag="Dhaf_1420" /inference="similar to AA sequence:KEGG:CLI_2399" /note="KEGG: cbf:CLI_2399 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457912.1" /db_xref="GI:219667477" /db_xref="GeneID:7258390" /translation="MIPTGGSITHGVIQYAQRPSLTWRLDPAKGRITGRLDGLESVQQ AAAKILQTQRFRHLIYTPNYGSELGQLIGMNRAFVKSEAVRMLEEALTQDDRITGVEN VQTTAAGDSLLIEFTVISTYGRFNMTQEVGD" gene 1524116..1525195 /locus_tag="Dhaf_1421" /db_xref="GeneID:7258391" CDS 1524116..1525195 /locus_tag="Dhaf_1421" /inference="protein motif:PFAM:PF04865" /note="PFAM: Baseplate J family protein; KEGG: cbf:CLI_2398 putative baseplate J-like protein" /codon_start=1 /transl_table=11 /product="Baseplate J family protein" /protein_id="YP_002457913.1" /db_xref="GI:219667478" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR006949" /db_xref="GeneID:7258391" /translation="MYEHQTYEAILVRMLARVPETIDKREGSLIYDALAPGAAELAQA YAELVVNNNLSFADTASGEFLTRRAAEFGIKRKVATKAWRRGGFLDSNNALLNIPLGS RYSIGGLNYTAIEQISTGAYVLECETAGTAGNQQFGDLLPIAYVNSLARAELTEVLVP GEDEETDEALLSRYYETVNEPAFGGNMADYRQKVNAINGVGGTKVFPTWAGGGTVKCT IIASDWAKPSPELVNEVQSTMDPEENQGMGLGQAPIGHAVTIAGVDKVTVDVETTLTL APGVTPGQVQSDVEAILDAYLLEQRKTWAAQTQIIIRMAQIDARMLTVQGVEDVTGTK LNGTEANFLLDEEEIPILGTVIINE" gene 1525188..1525775 /locus_tag="Dhaf_1422" /db_xref="GeneID:7258392" CDS 1525188..1525775 /locus_tag="Dhaf_1422" /inference="similar to AA sequence:KEGG:Cthe_2493" /note="KEGG: cth:Cthe_2493 phage-like element PBSX protein" /codon_start=1 /transl_table=11 /product="phage-like element PBSX protein" /protein_id="YP_002457914.1" /db_xref="GI:219667479" /db_xref="GeneID:7258392" /translation="MSKSIREYWPQLFDNILDFQLLADAVDTEIQSLGETVDQQLADQ FVLTSGYEAVKRRERMLGIQADPTNETLDFRKKRIINRYSTKPPFTIRYLQDRLDFLV GEEKAIVSADGQDFLLFVETAIENAALFKEVERTIKTIKPANLIYNQQTALGDHISME EHIRFRTLERQTRLGSTWRVGMTPFAVADLEVSVK" gene 1525772..1526053 /locus_tag="Dhaf_1423" /db_xref="GeneID:7258393" CDS 1525772..1526053 /locus_tag="Dhaf_1423" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457915.1" /db_xref="GI:219667480" /db_xref="GeneID:7258393" /translation="MISTEFLSNVADHVDGQVAKVVLNESYEITDFSIKETEQGLVHM QYIVPSGVVPTVVLIELKDVSDNVISSNEVYVPITADTIITQTIRVKEG" gene 1526056..1527495 /locus_tag="Dhaf_1424" /db_xref="GeneID:7258394" CDS 1526056..1527495 /locus_tag="Dhaf_1424" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbt:CLH_1708 putative phage tail fiber protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457916.1" /db_xref="GI:219667481" /db_xref="GeneID:7258394" /translation="MAKTNWQYGEIVTEEDFNQLGQEVNEATAGLAVLEEQLGEAEQS SKAYTDQQIQLVTATGIPKLVTYSYALMADQQGQTDFEIPLETFVKETDTVTVARNST VLSTERYSVVDPKIVRLAEGVNIGTEIFVQVWKNVPIGPDGAISASVLANDTVTESKM ADEMKKDVPGGVAGYDSFAMHLADFTQQIPYAVTAGSANAYTASTTPPLPALVAGVAI TVKFHAENTGVATLNWNGKGAKAIKKANGSDVSSGNLKLNGVYTLRYDGTNFILQGEG GIENDATAVAADILTSKTAYVGDGVKITGTMPNTPSQTATLQITGSAKPTKVVPAGYT PGGTVTAELAAALANRILAGNTIGGVAGTAVDGAEMKKFAIGSARSSTSQKSFPTSRG GTSNQYYINISGLSFVPSIVIASLSYTYGSSYQGTVFRRGYSSGYDGQYGGDTELGGA ILNLASSIGTSFDFPISPSDNNISWIAIS" gene 1527515..1527788 /locus_tag="Dhaf_1425" /pseudo /db_xref="GeneID:7258395" gene 1527790..1527936 /locus_tag="Dhaf_1426" /db_xref="GeneID:7258396" CDS 1527790..1527936 /locus_tag="Dhaf_1426" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457917.1" /db_xref="GI:219667482" /db_xref="GeneID:7258396" /translation="MVNGMYVNWLVSWVKKETINIQTGLPFVLNDIIIPEYRGEVEDL LNAQ" gene 1527990..1528889 /locus_tag="Dhaf_1427" /db_xref="GeneID:7258397" CDS 1527990..1528889 /locus_tag="Dhaf_1427" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: xau:Xaut_4480 tail collar domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457918.1" /db_xref="GI:219667483" /db_xref="GeneID:7258397" /translation="MAGKITKEELHPLLSQKIDDFAAHEADKVQHIPYAVATGAANAY AVTLNPAPTSYVDGMAISVKINVTNTGSSTLNINGLGAKNILKADLNLITSGKLKAGG IYTFRYNAEGPVFILQGEGGEYGTAGAGQVLAGYTVGTEGGLVNGSIPNFTDNTQWAT GATGVYVENEIWLRPPAGYYDGSVAYVRVYDPNWAAANILAGKSILGLAGTAINGAGM KKVATGTVAATGNDQTISGLDFTPHWILMRDVGNNSKVYWISFAQGVNATYINTGNIL SVGNGYFVFNSYNAKTMNWIAIE" gene 1528906..1529178 /locus_tag="Dhaf_1428" /db_xref="GeneID:7258398" CDS 1528906..1529178 /locus_tag="Dhaf_1428" /inference="similar to AA sequence:KEGG:CLB_2958" /note="KEGG: cba:CLB_2958 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457919.1" /db_xref="GI:219667484" /db_xref="GeneID:7258398" /translation="MEYGKRIIFDPSNGRVLNYCLEEMSGNLQEGLRPESIDFIDLPY GDTTLRDVDAYHVDVQTRTVVVDSYREHTLTYEELQQQLLIAQGVI" gene 1529180..1529323 /locus_tag="Dhaf_1429" /db_xref="GeneID:7258399" CDS 1529180..1529323 /locus_tag="Dhaf_1429" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457920.1" /db_xref="GI:219667485" /db_xref="GeneID:7258399" /translation="MVELYVKWLADWIKNGAVNIQTGLPFVLTDIKIPEYREAAEELL TAQ" gene 1529447..1529743 /locus_tag="Dhaf_1430" /db_xref="GeneID:7258400" CDS 1529447..1529743 /locus_tag="Dhaf_1430" /inference="similar to AA sequence:KEGG:ABC2817" /note="KEGG: bcl:ABC2817 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457921.1" /db_xref="GI:219667486" /db_xref="GeneID:7258400" /translation="MDFTLITALIGIAATLSGIILGWSARAKEAKNEVRKDAEIDTVI RTDMEYLKRGVDDIRIEQRAQGQRMDTMGERLSRVEESSKQAHKRIDRIEQKGE" sig_peptide 1529447..1529530 /locus_tag="Dhaf_1430" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.959) with cleavage site probability 0.919 at residue 28" gene 1529749..1530277 /locus_tag="Dhaf_1431" /pseudo /db_xref="GeneID:7258401" gene 1530292..1530654 /locus_tag="Dhaf_1432" /db_xref="GeneID:7258402" CDS 1530292..1530654 /locus_tag="Dhaf_1432" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457922.1" /db_xref="GI:219667487" /db_xref="GeneID:7258402" /translation="METALGYVQDFWGLLLVVAAFIIYLVSQGRAKAGKILLSLMLRL EKQAEEYALQTGEEKFRFVVERGYQLLPKYIKMFITYKMFVELAYELYEEAKSYLMSL DKKSIPVQIKNHKEIDHG" gene 1531197..1531400 /locus_tag="Dhaf_1433" /db_xref="GeneID:7258403" CDS 1531197..1531400 /locus_tag="Dhaf_1433" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457923.1" /db_xref="GI:219667488" /db_xref="GeneID:7258403" /translation="MKEFEVYYYDKIYTRLENCLFVFNERIRLLNEEDRSVNYNGFVD ACEQMRKGLDDFKTLNDLTVREK" gene 1531779..1532318 /locus_tag="Dhaf_1434" /db_xref="GeneID:7258404" CDS 1531779..1532318 /locus_tag="Dhaf_1434" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: gtn:GTNG_2939 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457924.1" /db_xref="GI:219667489" /db_xref="GeneID:7258404" /translation="MTIMDKVQSATRATVQGIVDREPVNYLEGGGIYGIISQGRHNLC TLEIMYNHAQDSELKERIEEAMEKLTRPLIEECEGLLKESNAQVPQFHFTNHKMHKEK LNIPEDARMTDMEIAAAVGTMAKAAQVNILAALQNSYQLHIGIMFRKFLDESLDWNYR LLQLMINRGWLPHVAKITH" gene complement(1532432..1532893) /locus_tag="Dhaf_1435" /db_xref="GeneID:7258405" CDS complement(1532432..1532893) /locus_tag="Dhaf_1435" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457925.1" /db_xref="GI:219667490" /db_xref="GeneID:7258405" /translation="MLFRKRNSWLCQDNVQLPNNSPQLCQGDVQLPNNTPQSRQGDVR LRKNSPRFCQGNVPLRQNNTSIMALFCSLPLGTKLDVRAGDRIWRGNFSGVSNCIITL TEAQLLSDSFKPIIGTKHSIRIPVSDISFVKEGCIQRWPCVVRNCNCHCIS" gene 1533118..1533783 /locus_tag="Dhaf_1436" /db_xref="GeneID:7258406" CDS 1533118..1533783 /locus_tag="Dhaf_1436" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: swo:Swol_1786 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457926.1" /db_xref="GI:219667491" /db_xref="GeneID:7258406" /translation="MKKRGILLLILISTVLLGGIAGKLLWKPDPIELLTHGLEELTQA TSFRYTMIQHQTVEGKDRILNQILGEKDGGNTRISGEVVGTKTEMILTSEGLYMQDPF TKRWIRYPSVPAAHEAFLAELNPLSSLQFKEYGEVVLQGQEKLDKVNTWVLKFNPTIQ NQIMENGWTDFAYIMFIGKRDKLIHRVIIEAKSKTDGQMMSLMMEFKDYGETMNISVP INN" sig_peptide 1533118..1533174 /locus_tag="Dhaf_1436" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.680 at residue 19" gene 1534004..1534549 /locus_tag="Dhaf_1437" /db_xref="GeneID:7258407" CDS 1534004..1534549 /locus_tag="Dhaf_1437" /EC_number="2.4.2.8" /inference="protein motif:TFAM:TIGR01203" /note="KEGG: drm:Dred_2376 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="hypoxanthine phosphoribosyltransferase" /protein_id="YP_002457927.1" /db_xref="GI:219667492" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005904" /db_xref="GeneID:7258407" /translation="MEEKIGKVLLSREEIQKRVAELGEEITRDYKDQNLLVLAILKGA VPFMADLIREIRIPLKYDFMAVSSYGASTHSSGVVRILKDLERSVEDHHILIVEDIID TGLTLKYLKENLAARNPLSIKVVTLLDKPDRRKAEVVPDYNGFTIPDEFVVGYGLDFD EHYRNLPYVGILKPEAYSSEG" gene 1534661..1536193 /gene="guaA" /locus_tag="Dhaf_1438" /db_xref="GeneID:7258408" CDS 1534661..1536193 /gene="guaA" /locus_tag="Dhaf_1438" /inference="protein motif:TFAM:TIGR00884" /note="contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway" /codon_start=1 /transl_table=11 /product="GMP synthase" /protein_id="YP_002457928.1" /db_xref="GI:219667493" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR001317" /db_xref="InterPro:IPR001674" /db_xref="InterPro:IPR004479" /db_xref="InterPro:IPR004739" /db_xref="InterPro:IPR006220" /db_xref="InterPro:IPR011702" /db_xref="GeneID:7258408" /translation="MAQELVLVLDFGGQYNQLIARRVREAHVYSEMISYKTPVEEIKA RNPKGIIFSGGPASVNQEGAPKVDEAIYELGIPIFGICYGMQLMTVQLGGKVMHPEVR EYGKAMLHVDQAKGLWKGLGGERQCWMSHGDSVTELPEGFVIAAHTDHTPVAAMMDET RHFYGVQFHPEVKHTPDGQAMLKHFLFDICGCHGEWTMESFIDAQVKAIREKVGDRQV LCALSGGVDSSVAAVLVHKAIGDQLTCVFVDHGFMRKNEPEQVKKIFTEQFHLKLIFV DARERFMAKIGGVSDPETKRIGIGNEFIRLFEDEARKLGQIDFLVQGTLYPDIVESGT DTAETIKSHHNVGGLPEDMQFELIEPLDMLFKDEVREVGAELGIPDEIVWRQPFPGPG LAIRIIGEVTEEKLDILREADAVIVEEIRNAGLYKEVWQSFAVLPTIKSVGVMGDGRT YAYPIVVRAVTSEDAMTADWARLPYDLMEKISTRIVNEVKGVNRVVYDITSKPPGTIE WE" gene 1536346..1537299 /locus_tag="Dhaf_1439" /db_xref="GeneID:7258409" CDS 1536346..1537299 /locus_tag="Dhaf_1439" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: amt:Amet_2853 phage integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_002457929.1" /db_xref="GI:219667494" /db_xref="InterPro:IPR002104" /db_xref="GeneID:7258409" /translation="MQTKKGLEKMIMSKGEDITFTELQKRYLKKCLVNNLSEYTLRFY EVSCNTFNKFIDLSQLMASEVNRDLIDNYILYLRNTGVKAVTINTYIHGISPIIKYGM SLGLIEKFGFNEIKTTEEIKQIYTPHELQILLKKPNMKSFAEYRNWVIINFLLGTGVR ALELRSIRIKDIDLKMSMLIVPRTKNGKQRYIPISKSLNKILTDYLDYRKAESEEDFL FCNEFGQYLPRTTLQIGITKYCKKRGVNKYSLHLFRHTFANMWIVNNGSLFILQKILG HASLKQVNHYANLAMGDLKQNFDSFCALESVAVQDKNRIKM" gene 1537439..1538119 /locus_tag="Dhaf_1440" /db_xref="GeneID:7258410" CDS 1537439..1538119 /locus_tag="Dhaf_1440" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457930.1" /db_xref="GI:219667495" /db_xref="GeneID:7258410" /translation="MSSWKTIRSFHLDQPITIKDKPIPSKALYCLKQTPKGVEYWQVF WREEGKMKSVHIGKELPFDEPVPTPSVDDLLLAISKLEEENKRLRDKIKVLEENQQSN TSLLSDSIENNTESNTGESINIKTFLGMDNKLRAEAAILTMEYQGKVIRIRLYPDKSF TIQYRPGKKLWKSIEQGEAKKIVSKWDKEKIVYVFGKSENPECVVKGEFNCNIYNSGL QGDNHRVT" gene 1538400..1538759 /locus_tag="Dhaf_1441" /db_xref="GeneID:7258411" CDS 1538400..1538759 /locus_tag="Dhaf_1441" /inference="protein motif:PFAM:PF05973" /note="PFAM: protein of unknown function DUF891; KEGG: spn:SP_1143 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF891" /protein_id="YP_002457931.1" /db_xref="GI:219667496" /db_xref="InterPro:IPR009241" /db_xref="GeneID:7258411" /translation="MFKVIIYEDKNGKSSIADYIAELDEKANTSKDSRVRLKKIYQYF ELLKIYGTRAGLPSSKYIEEDIWELRPTNDRFFYVYWKNDTFVILHHYIKKTQKAPRQ EIELAKRNLKDFLERSK" gene 1538762..1539073 /locus_tag="Dhaf_1442" /db_xref="GeneID:7258412" CDS 1538762..1539073 /locus_tag="Dhaf_1442" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: spn:SP_1144 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002457932.1" /db_xref="GI:219667497" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258412" /translation="MAIGRDWDDIKKNLSSLTQEDKDEIDFQVKLIGEILAARKEKGI TQAELDSLCGVKQTHIARIENNNTDPQLSTIFKILRPLGKTLAVVDIPETLDHASDAH F" gene 1539051..1539488 /locus_tag="Dhaf_1443" /db_xref="GeneID:7258413" CDS 1539051..1539488 /locus_tag="Dhaf_1443" /inference="similar to AA sequence:KEGG:794477" /note="KEGG: fgenesh4_pg.C_scaffold_12277000001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457933.1" /db_xref="GI:219667498" /db_xref="GeneID:7258413" /translation="MLLMHISKKVSTYTLPLETKDEVIDWMLKNQLDKRNLTDTQIAY FRGLQYEREKAKHGGDRKSDNTKSSGESCHLVKTAEKLATQHKVSERTIRDDGSFAKA VDKIASNFGQEIKNKILTKEVQISKDDVRVLSNLPVEEQEGGW" repeat_region 1539752..1541250 /note="ISDha7" gene complement(1540011..1541182) /locus_tag="Dhaf_1444" /db_xref="GeneID:7258414" CDS complement(join(1540011..1540931,1540931..1541182)) /locus_tag="Dhaf_1444" /ribosomal_slippage /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_002457934.1" /db_xref="GI:219667499" /db_xref="GeneID:7258414" /translation="MSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTVRNW LKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDILKKGYRHLRPKQPEIIYQMI KKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQAMIG LDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLLNQK FKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEALRN AVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFFSTI KSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKAA" gene 1541273..1541461 /locus_tag="Dhaf_1446" /db_xref="GeneID:7258415" CDS 1541273..1541461 /locus_tag="Dhaf_1446" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457935.1" /db_xref="GI:219667500" /db_xref="GeneID:7258415" /translation="MEVIDSKEKPKKTRPSTEDKLKVLLDEQFNRIEEMVDAKLEKTQ YRIYKSFMIELNRAILRR" gene 1541466..1541624 /locus_tag="Dhaf_1447" /db_xref="GeneID:7258416" CDS 1541466..1541624 /locus_tag="Dhaf_1447" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457936.1" /db_xref="GI:219667501" /db_xref="GeneID:7258416" /translation="MEKILKSEMDLLIEKGVLKCVKGRYPGLISGSKQSMGKIKVDGL RNLFIISY" repeat_region 1542002..1543861 /note="ISDha9" gene 1542180..1543778 /locus_tag="Dhaf_1448" /db_xref="GeneID:7258417" CDS 1542180..1543778 /locus_tag="Dhaf_1448" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: acr:Acry_3379 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS1634 family protein" /protein_id="YP_002457937.1" /db_xref="GI:219667502" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7258417" /translation="MFARIKTAYNRDGSPRRYLQLVESRREEGKVRQKVLCNLGRVED LQNGKLDDLIRSLAKFSDTLAVVDAAEDLFADWSKEFGPSMVFRRLWENLGLHTILDG LFNERDLSIDVQEAIFCMVLNRLTEPTSKLGVSDWKDSVYRPEFESLKLHHFYKAIDF LDENKDTLEEQLFFHHTNLFTQQLDLVFFDTTSTYVEGDAGAFDLLEYGHSKDHRPDR LQVMIGLLMSRDGIPIAHHVFPGNTSDTDAFIEAVSDLKKRFTIQRVIVVGDRGMMGK RTLELLEELQLHYILGVRMRNVKAGPELATSPEPYVFTKDNLKVKEVLHQGKRYIVCL NEEEAKRDQWVREQIEVKLRSKLEHGSIKDLIGHSEYKKYLNVSAEAATINTDKLKQA AVFDGLYILQTNTELPTEEVATAYRDLWQIERAFRNLKSTLDLRPVYHWKERRISGHI MLCFLALVVQIRFQKLLENCASEYGYTEVIRALRKVHAVKLKLKDQDHLVRTEIHGAA AMAFRAVGLRVPERVQKMQDNYHK" gene complement(1543714..1544904) /locus_tag="Dhaf_1449" /db_xref="GeneID:7258418" CDS complement(1543714..1544904) /locus_tag="Dhaf_1449" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbt:CLH_2516 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457938.1" /db_xref="GI:219667503" /db_xref="GeneID:7258418" /translation="MELLELLKAYIDKFKRKIPEKWLMHFEKNPLIPIGTVMSVIGVF FYTLGYLFLYGYYFGGEELSVDPSFLKILVKFVPFNHSSVTLVGFLYLITVLIISVWL VQLYFKWNQKPKMEFYIHLILGLCLLFTVSAFLSFSFIGRVSIKISSLWFGPFFIVLW LFSGAKTIKKPLVLFGATSNGLLLLLISALIFNLLKLQCAELLYNIMLIVIIGIFIPV FSIFLYGLKKIKDDFLYPICINPLIPVLIILILKKLDKCSGYELIILISSYIILFFPA FFILKIIRKKIDEKINSPKQDEEIILDTKTKPLNLGSFLLLSGVSVFFIFLILIPFSA LQSGKYVRFFIESDSSLTPQKLKLLNFKGLKGSFLGVPLQLTIYGNYLASSVLVQEPE APLP" gene complement(1545234..1545635) /locus_tag="Dhaf_1450" /db_xref="GeneID:7258419" CDS complement(1545234..1545635) /locus_tag="Dhaf_1450" /inference="protein motif:PFAM:PF03681" /note="PFAM: protein of unknown function UPF0150; KEGG: chy:CHY_2510 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0150" /protein_id="YP_002457939.1" /db_xref="GI:219667504" /db_xref="InterPro:IPR005357" /db_xref="GeneID:7258419" /translation="MKKDRYIYPAIFDYAEDGISIEFPDLPGCLPCAHSDEEAVKNAQ EAMALHLYNMELDKDDIPASTPVTQLRPEANQAIVLVEAWMPSFRDKMENKAIKKTLT IPKWLNDIAEEKQVNFSRVLQDALKNYLGIQ" gene complement(1545680..1545877) /locus_tag="Dhaf_1451" /db_xref="GeneID:7258420" CDS complement(1545680..1545877) /locus_tag="Dhaf_1451" /inference="protein motif:PFAM:PF07927" /note="PFAM: YcfA family protein; KEGG: cbk:CLL_A2288 hypothetical protein" /codon_start=1 /transl_table=11 /product="YcfA family protein" /protein_id="YP_002457940.1" /db_xref="GI:219667505" /db_xref="InterPro:IPR012933" /db_xref="GeneID:7258420" /translation="MKSYSSREILQILTADGWYHINTEGDHHHYKHPTKRGKVTVTHP VKDIPIRTVKSILKQAGITLQ" gene 1545980..1546255 /locus_tag="Dhaf_1452" /db_xref="GeneID:7258421" CDS 1545980..1546255 /locus_tag="Dhaf_1452" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457941.1" /db_xref="GI:219667506" /db_xref="GeneID:7258421" /translation="MDNQKFKTSDFNLAAYLMTNGAECYGPIDENGKCFFVFAKDEKT SEAFMNFKQDDWLRNYNANKKYCLNKMYEMRSEARNRNKESVVTAVE" gene 1546258..1546728 /locus_tag="Dhaf_1453" /db_xref="GeneID:7258422" CDS 1546258..1546728 /locus_tag="Dhaf_1453" /inference="similar to AA sequence:KEGG:CLI_1903" /note="KEGG: cbf:CLI_1903 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457942.1" /db_xref="GI:219667507" /db_xref="GeneID:7258422" /translation="MALKKLCGRSGCSQIIDYSLTYCDKHQREFEEKQKQRHKEYKQR RDDKKEQAFYSSDEWVRTRDYVKAKYHGLCLWSYYVDREIVFCESVHHIEELKEAWEK RLEVDNLIPLSETVHQKVHRLMRENGKNEKVKMVLRELKRKWEEAFVEDNGLSG" gene 1546858..1547355 /locus_tag="Dhaf_1454" /db_xref="GeneID:7258423" CDS 1546858..1547355 /locus_tag="Dhaf_1454" /inference="protein motif:TFAM:TIGR01558" /note="TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit putative P27; KEGG: eugene3.31710001" /codon_start=1 /transl_table=11 /product="phage terminase, small subunit, , P27 family" /protein_id="YP_002457943.1" /db_xref="GI:219667508" /db_xref="InterPro:IPR006448" /db_xref="GeneID:7258423" /translation="MSGRKRKSVDLLIAEGKTHLTKDDIEKRREAESQLKPKDDKIKC PSWLKDKVAKSEFRKISHELQELKLLTNLDVNTLASYCVAYAQYLKATSELADQDLVI TQTNKAGFTNMVENPLIRIQLKYSNEMKKHAAEMGLTINSRLKLVIPKKEAKRDPIEE DFGDI" gene 1547355..1549073 /locus_tag="Dhaf_1455" /db_xref="GeneID:7258424" CDS 1547355..1549073 /locus_tag="Dhaf_1455" /inference="protein motif:PFAM:PF03354" /note="PFAM: Terminase; KEGG: cbf:CLI_1901 putative phage terminase, large subunit" /codon_start=1 /transl_table=11 /product="Terminase" /protein_id="YP_002457944.1" /db_xref="GI:219667509" /db_xref="InterPro:IPR005021" /db_xref="GeneID:7258424" /translation="MTMLQELIKYSDDIITGKINACKKHKSACKRFLLDIEREGTDAF PYVWNEEKALKIVKWFSYLRHSKGILAKQPIILTTWQKFILCNIYGWYHKDTGYRRFK KAFIEVARKNAKSQIMAGVALYEISAFGVNASEAYCLGTKMKQSKIVFNEAKLMLKSS PLQKKFKITRDEIRHVKSDSFIRPLSKEDGKTGDGENPQFACIDEYHQHPTDEMYSVM ATGMKARPEPLLMIITTAGKDLTYPAYTQEYQYCSNVLNGSIENNTYFVMICELDKED EEDLSNEENWKKANPIVMYNPIGIQSMRDDYKIACDISEKMTDFMTKNLNIWVQKTNT GYMDMEKWKLCEVDQLPFDLSGRDVYVGVDLSAKIDLSSVAFLFPIDDEEEERKYVLL SHSFIPRGRLQERIRVDKQPYDLWQRQKFLTVTDSEIVNQKDIIKYIVDTCEENNWNI NMICVDPNNASLFMQEMSDKGYIVVDVWQSAKSLNDATTGFREQVYLKNVVYLKNPLL TFAMANTRIRKNNGLIKIDKDAQKQRIDPIDATLCAYKLAMFHKSSVDLSDLITEEYL SKLGWG" gene 1549079..1549261 /locus_tag="Dhaf_1456" /db_xref="GeneID:7258425" CDS 1549079..1549261 /locus_tag="Dhaf_1456" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457945.1" /db_xref="GI:219667510" /db_xref="GeneID:7258425" /translation="MNRIKMFLRDYLEDIFVFLGLLLIILASLMINIILGIYAAGVIL FLLGVYFIRFPIRKGR" gene 1549267..1550520 /locus_tag="Dhaf_1457" /db_xref="GeneID:7258426" CDS 1549267..1550520 /locus_tag="Dhaf_1457" /inference="protein motif:TFAM:TIGR01537" /note="TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bcy:Bcer98_2595 HK97 family phage portal protein" /codon_start=1 /transl_table=11 /product="phage portal protein, HK97 family" /protein_id="YP_002457946.1" /db_xref="GI:219667511" /db_xref="InterPro:IPR006427" /db_xref="InterPro:IPR006944" /db_xref="GeneID:7258426" /translation="MGLFRDSYETRNINGYSNDEFMRLLGINNLSVNKDKLSEITYFI CIKTLSEAVAKLPLKLFRETQKGTEKAVGHYLYSLLKLRPNPYMSAWNFWTTIEFQKN HFGNSICYIDMVKSGRDSGKVKGLYILDHKNVQIWVDDAGLISKDNAVWYIYTDNNGK EYKLCHDQILHFRSAISLDGITGLAIQDILKMSIENAQNGQKFINTYWKQGMFSKGLL QYTGDIGEKAMKTMQSKFESMANGISNAGRILPVPLGFNFTTLDNKLVDSQFLELSMW SARQISAAFGIKPNQLNMEQKYSNMELNQREFYLDTLLPVITAYESELTWKLLTEQER NEGMFFKFNVDAILRADFETRMKGYGIAIDKGFMTPNEVREKEDLPTDPDGDKLLVNG TYIPLSMVGQQYTNAPLKGGENIEE" gene 1550510..1551103 /locus_tag="Dhaf_1458" /db_xref="GeneID:7258427" CDS 1550510..1551103 /locus_tag="Dhaf_1458" /inference="protein motif:TFAM:TIGR01543" /note="TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: bcl:ABC1332 phage head maturation protease" /codon_start=1 /transl_table=11 /product="phage prohead protease, HK97 family" /protein_id="YP_002457947.1" /db_xref="GI:219667512" /db_xref="InterPro:IPR006433" /db_xref="GeneID:7258427" /translation="MKNKEIEQRALTTNFEIRSNEDGQEYFEGYALKFEQWSEVMGDF QEIIDKDALKNTDLSDVRALINHDNNYILARTSADNLELEVDGIGLKFKAYPSDTSYS RDLKENMRAGNLSKCSFAFRLNWDNPDCEKWEYNEESKLYQRRIKDIAKIVDVSIVTN PSYQQTEAVITRALDDFKEKQRKELLKRKLQLELELL" gene 1551168..1552277 /locus_tag="Dhaf_1459" /db_xref="GeneID:7258428" CDS 1551168..1552277 /locus_tag="Dhaf_1459" /inference="protein motif:TFAM:TIGR01554" /note="TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cpf:CPF_1584 HK97 family phage major capsid protein" /codon_start=1 /transl_table=11 /product="phage major capsid protein, HK97 family" /protein_id="YP_002457948.1" /db_xref="GI:219667513" /db_xref="InterPro:IPR006444" /db_xref="GeneID:7258428" /translation="MKKIDELRQELSTKKEEVRGLLENDKVNEAEAKMPEVRTLETKI KLQSELDEAEEREVQNKLENRKDDSKMEKRTVDQDMEYRAIGKFLLGSEMTAEERASV NIGNSGAILPQGFVNQVQVLTDGFPSLKKYCHVIPTTTTSGKMPISSGSTSKKLAKLA TDNEMVKEMITTKPVEYATEDYGKIIPVENSVLEDTTVDFFNSLIAPDFAECAVNSEN EEIINIVEANSVEFEATDYKGIVKCLNTKVKPSLLKNTIILTNQSGYDYLDNLTDAKG RPLLNDSLAVEGGKTFKGREIVVLDDTELPAATDKKVFYIVNLYALIKFFDRKGYEIA VSKEAGFTYNQTFVRVIERFDTVKGDSRAAFKIEF" gene 1552350..1552640 /locus_tag="Dhaf_1460" /db_xref="GeneID:7258429" CDS 1552350..1552640 /locus_tag="Dhaf_1460" /inference="protein motif:TFAM:TIGR01560" /note="TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bcy:Bcer98_2592 uncharacterized phage protein" /codon_start=1 /transl_table=11 /product="uncharacterized phage protein (possible DNA packaging)" /protein_id="YP_002457949.1" /db_xref="GI:219667514" /db_xref="InterPro:IPR006450" /db_xref="GeneID:7258429" /translation="MILDLTTVKDFLKIEQDFHEEDSIIQLLIDAAEIYLHNATGIKF DEQNNMAKLFCLILVSDWFDSRQMVGKISEKVRFTVESMITQLKYCYGGDAP" gene 1552637..1552966 /locus_tag="Dhaf_1461" /db_xref="GeneID:7258430" CDS 1552637..1552966 /locus_tag="Dhaf_1461" /inference="protein motif:TFAM:TIGR01563" /note="TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: cbf:CLI_3265 putative phage head-tail adaptor" /codon_start=1 /transl_table=11 /product="phage head-tail adaptor" /protein_id="YP_002457950.1" /db_xref="GI:219667515" /db_xref="InterPro:IPR006453" /db_xref="InterPro:IPR013045" /db_xref="GeneID:7258430" /translation="MNAGDLRKRITLQVLSDKTTNENGFPLPEDERYQDHVTIWAAVY PLKGSEFWTAKTTYNKNVVKFICRYIPGVNADMQIKYNNRIFDIIGVIDVDERHKWLQ IMGEEVV" gene 1552967..1553323 /locus_tag="Dhaf_1462" /db_xref="GeneID:7258431" CDS 1552967..1553323 /locus_tag="Dhaf_1462" /inference="protein motif:TFAM:TIGR01725" /note="TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: cbf:CLI_1894 HK97 family phage protein" /codon_start=1 /transl_table=11 /product="phage protein, HK97 gp10 family" /protein_id="YP_002457951.1" /db_xref="GI:219667516" /db_xref="InterPro:IPR010064" /db_xref="InterPro:IPR011693" /db_xref="GeneID:7258431" /translation="MAYIDINGFEDLEQILQDMTITDAQEKKAMKKALEPIYEEVMKN APESTGNLKRQIKTSVKKEDFATVGRVKLGAWYSKFNEFGTSRNKSHIGFFERSVNST KDKAIKILTEELLKLK" gene 1553334..1553693 /locus_tag="Dhaf_1463" /db_xref="GeneID:7258432" CDS 1553334..1553693 /locus_tag="Dhaf_1463" /inference="similar to AA sequence:KEGG:CLI_1893" /note="KEGG: cbf:CLI_1893 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457952.1" /db_xref="GI:219667517" /db_xref="GeneID:7258432" /translation="MATNIKQLLNQVLSSPEIVNLLPNKRVYFLHAEAPEKPYLEYEI IDEFGEAWAENREIATNYYIQVDIFSMGDYTAIENAVKDTMISYGFKRSMSVDLYEND IKLYHKVMRFVITLKNK" gene 1553715..1554311 /locus_tag="Dhaf_1464" /db_xref="GeneID:7258433" CDS 1553715..1554311 /locus_tag="Dhaf_1464" /inference="protein motif:TFAM:TIGR01603" /note="TIGRFAM: phage major tail protein, phi13 family; KEGG: cbf:CLI_1892 phi13 family phage major tail protein" /codon_start=1 /transl_table=11 /product="phage major tail protein, phi13 family" /protein_id="YP_002457953.1" /db_xref="GI:219667518" /db_xref="InterPro:IPR006490" /db_xref="GeneID:7258433" /translation="MAIVGLEKLYYAKLTADGVSGVTYDTPIYLEGVKEISISPKVST VKAYAENRAWAQITSFDDVEVSIDLIDLTNAQRADLLGSDLAEEGGVISRVGDTAPYI ALLYVANTSDGGKQYGILFKGKMELPEDSAKGQEGTVSFQSFSMKASFMPLRYNGMWK YQVSDKDPDCPADIQTKFFEQVIIPTQKIVENGEQEQG" gene 1554342..1554746 /locus_tag="Dhaf_1465" /db_xref="GeneID:7258434" CDS 1554342..1554746 /locus_tag="Dhaf_1465" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457954.1" /db_xref="GI:219667519" /db_xref="GeneID:7258434" /translation="MGTPFHLKNMEYYREMKIMSKINVAVNEFKIVLGGVEYTFRLDF RALLKFTKRYDDALVIFNEFLAGKDIYNCIIKILSCACPEKEFTEDELAEQLSFDYNT MKLMDQITFALIEGVLSDQNDKNEKGNKTPKN" gene 1554980..1558258 /locus_tag="Dhaf_1466" /db_xref="GeneID:7258435" CDS 1554980..1558258 /locus_tag="Dhaf_1466" /inference="protein motif:TFAM:TIGR01760" /note="TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: cbf:CLI_3259 TP901 family phage tail tape measure protein" /codon_start=1 /transl_table=11 /product="phage tail tape measure protein, TP901 family" /protein_id="YP_002457955.1" /db_xref="GI:219667520" /db_xref="InterPro:IPR010090" /db_xref="GeneID:7258435" /translation="MADDLEKRITAKMVLDSSGFNSSIQGVNQQLRLAQSELKASSEQ LGVFGTNTERLKATTEGLSRQIDLQRQKVDIYQSSIQKTTEKLQNNIKARDELKKKLE EATAKYNESIKLYGKESEEANKAKESVDKLTEEYKQKQKQVENNSKTINNYTVKMNQA EEGLAKMQGELQKTNDELAKSENKWLNAGKALEETSQKLKTTGESVGNVGGVILKATA PLVGLGAASLKFGIEFESAFAGVKKTVTATEEQLAGLSQGIRDLSKQMPQTASEIAGV AEAAGQLGIKTESILGFTKTMVMLGDTTNLTSEQAATDLARLANITQMPQTQFDRLGS SIVALGNTMATTESEIVSMSLRLAAQGKQVGMSEAEIAALAGTMSSLGIEAEAGGTAM TTTLKKIQTAVAEGGSDLKAFADVARMSSQDFANLFNEDAVSALDAFVKGLAGSSAEG KNLTTILSDLGITGIRESDTLLRMAGASELLSSAVETSTQAWEENVALSNEAEQRYQT TGSRLLMLKNQFIDVGIKLGEVLIPYVETAALKVGEFADWLGQLDKSTLDTTTKIVGL TVAFGGILKIGGGAISTVGSIAGGLGKLSTALGGAKLATAGIGTAASVAGGVSGLGAL TAGLGSAAVAVAPFVLAAGGIAAVGYGINKSMSQEAVPAVDLFADHVEMTAEQVELAS QSMGAVVETTTTQITEGTKEAVGAYLELDNQATETLSNLYINSTTITSQIADDMVGQY SSMTSQIKVGLDKHHQQLLSDMELFFTNSRTLSDAEEKEVLAKLQNDNNAKKAEIDNY TKQIQEILIKASEDKRALTLEEQQEINEIQEKMRVNAVKSLSDSEVESKVILERLKEY STRITAEQASEVIANAERQRKEAVDKAEQQYQETVKNIIRMRDETGVISADQADRLIK DATRQKNEGIVKAQELKDGVVEKIRSMNRDILNDINITDGSIKNGWNKLKDWFGNNPI TRWVRTQMSGEDNLDIGQNWAGTSSWRGGLTTLHERGWEIFDLPKGTRVYPHEASVEL VNKMAQSFASQSRGGFGLGKVEVNLNVHGNLDKSILPQVERVLESSSQKIVKELNKMG VRIR" gene 1558481..1558615 /locus_tag="Dhaf_1467" /pseudo /db_xref="GeneID:7258436" gene complement(1559493..1560569) /locus_tag="Dhaf_1468" /db_xref="GeneID:7258437" CDS complement(1559493..1560569) /locus_tag="Dhaf_1468" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457956.1" /db_xref="GI:219667521" /db_xref="GeneID:7258437" /translation="MNKKSRTLVITLFLVCITLLGGNHFAVSASALQANSEAPLLTYK GTHGVEIRSYVPGYDLDKLKEIYDEFAKNTIGEEIAYLSHINLYPDYPRGTNTVGMWH GEWFRDQIAPGRYIDLFGVGDDNPYVLNTLSHEYGHHFLYYYLNKKEGISNNYLDSEY AKIRNLNHYTEIDNGDHCWSAVEIAAEDYVQLFGSPNLTRIRSYQYTPQENAHLPLAW EVPGLYDYFVNLSGLKGKEDRDAPSMPLLQLTEVTSEGLFFQWDEATDDSREPLIYSM VGVTHPTEDSTVKYLMSITKENNCYKSSLSRRQLREDRIEDILVKLIVMDQSGNAVSN NIQIDLSRPEDYFFLMPSPVLYLK" sig_peptide complement(1559493..1559588) /locus_tag="Dhaf_1468" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.470 at residue 32" gene 1560825..1561628 /locus_tag="Dhaf_1469" /db_xref="GeneID:7258438" CDS 1560825..1561628 /locus_tag="Dhaf_1469" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: cac:CAC2351 glycosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002457957.1" /db_xref="GI:219667522" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7258438" /translation="MDELIRMEKEKSQIRKLREKYQGIERPGVSIILPTSKPKYLQNI YANLQRIHYPKVEYIVIINTSRARPEIYYEKLKDLAEIRFLVLNESYTLGDCLNYGID MAKYDYIGKMDDDDYYGAFFLEDLMLAFQYTNAQIVGKGVHFVYFESNFALGIRLPTA VPYSLEEGVFFENRYTRGPSLSGGTFMIKREVFGKVRFPSVNLGEDVKFLQECTRRNI LIYGADRYNYVYMRHGDRMDHTWSVNSDFVYRQAHILQQGGDFLPMITV" gene complement(1561681..1563120) /locus_tag="Dhaf_1470" /db_xref="GeneID:7258439" CDS complement(1561681..1563120) /locus_tag="Dhaf_1470" /inference="protein motif:TFAM:TIGR02276" /note="TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mma:MM_0214 hypothetical protein" /codon_start=1 /transl_table=11 /product="40-residue YVTN family beta-propeller repeat protein" /protein_id="YP_002457958.1" /db_xref="GI:219667523" /db_xref="InterPro:IPR011964" /db_xref="GeneID:7258439" /translation="MTHSLLAWVSMPAIDSSLPGDIAVYHMESEKLLGMIPVGIGPGY LTCFPEGKKLYVPNRGSATLSVIDCDSFIVKRTIPVGKNPQALVIDSAGAKGYVAGTE EQIISVIDLHKDEVINTIPLNLYPSGLALSRDGKKLYVSHQAGCSISIIDTEHHQAAD TFHLKDYPKNSPLSSPDLALSPVGLALSPDGTLLYLILSPENRVSVVDLGLRGEVASI PVGRNPQRIALHPSRPLAYVTNHDSDSISIISTYEHQVLATIPSLSAPRELTLTPEGS QLWVTNGCQLTLIDTETKAIISTLYAPLSVQTRQGVAISESHRQLLLSEVLPCNTQRP YSFVTEKLYFKPPKPFDLTIHHQFPIPAAIAEGLIFEEAEVKHHSISILPIPLRPNYH HLTFSLRIPYKIIYRDEQNQLHELKDAIHHVLSAVETHLTPSRIKQNFNLRIFTQSEV IGKSVPTPNSLDLIIRTQLVAMQQIHPTE" gene 1563829..1567683 /locus_tag="Dhaf_1471" /db_xref="GeneID:7258440" CDS 1563829..1567683 /locus_tag="Dhaf_1471" /EC_number="6.3.5.3" /inference="protein motif:TFAM:TIGR01857" /note="KEGG: hmo:HM1_2619 phosphoribosylformylglycinamidine (fgam) synthase, PurC component; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase" /protein_id="YP_002457959.1" /db_xref="GI:219667524" /db_xref="InterPro:IPR010141" /db_xref="InterPro:IPR010918" /db_xref="GeneID:7258440" /translation="MELQSVKRIYVEKKPGFNIEAQGLLQDIQENLGIKNLEDLRIIN RYDVAGITSEEYAQARRIIFSEPTVDWVYDEELKLAPQDRVFAMEYLPGQYDQRADSA RQCIQILTQKERPEIAAAKVMVLKGQITEAELERIKQYCINPVESREAGLEKPENLAF VPELPEDVETIEGFTGMAQTELEQFYQGAGLAMSLEDLAFCQGYFRDEEKRDPTITEI RVIDTYWSDHCRHTTFFTQLQNIVIAEGEFAEPIRKAYEEYQESRGLVYGEKAESRDV CLMDLAVIGMKELKKKGLLQDLDESDEINACSIVVNVDVDGRSEEWLVMFKNETHNHP TEIEPFGGAATCLGGAIRDPLSGRTYVYQAMRVTGSGDPRAKVEETLPGKLPQRKITT VAAAGYSSYGNQIGLATGQVAEVYDEGFIAKRMEIGAVIAAAPRENVVREAPKPGDVV VLVGGRTGRDGCGGATGSSKEHTTESLATCGAEVQKGNPPTERKIQRLFRNPKVSRMI KKCNDFGAGGVSVAIGELTDGLEIDLDVVPKKYEGLDGTELAISESQERMAVVIAAEN LEAFVGYADEENLEATLVAKVSEHPRLNMTWRGQTIVDISREFLNTNGVKQKTDVSVL LPESSENYFRQLPQGGRSGETASGAAADSSSGAAAGDMSLAGMALEDAWLANLQDLNV CSQKGLVERFDSTIGANTVLMPFGGKYQATPAEGMVAKIPVESGDTRTATAMTYGYNP QCAQWSPFHGALYAVVEAVTKMVALGADYRSIHLTLQEYFEKLGKDPQKWGKPFSALL GAFYAQKKLGIPAIGGKDSMSGTFMDLHVPPTLVAFAVGVLNTDRVISQEFKQAGSQV VLVPAKRDRDEVIDFEHLAGNYDKVHELIHGGKVLSSHTVKMGGLAAALTKMAFGNRI GMKFSSPMAGADLFRADYGSIILEIPAAVELRDALGEVRYMVLGSTQEKPAIELNEAE IFLDKALAIWEKPLERIFPTKTATVDQPQKISFSERNSQRPAIKLAKPRVFIPVFPGT NCEYDSERAFTKAGAVVETLVIRNLTPDHVEESIAGIVKGIERAQMVMLPGGFSAGDE PDGSGKFIATMFRNPRIKEAVMKLLKQRDGLMLGICNGFQALIKLGLVPYGEIMDLDE EAPTLTYNKIGRHVSCMVQTKVVSTLSPWFSGMELGDIHTIPVSHGEGRFVASPDVVR KLMERGQVATQYVDHQGCPSNEVLYNPNGSYEAIEGITSPDGRVLGKMGHSERVGEGV AINISGNKYQPIFAGGVNYFRG" gene 1567734..1568228 /locus_tag="Dhaf_1472" /db_xref="GeneID:7258441" CDS 1567734..1568228 /locus_tag="Dhaf_1472" /EC_number="4.1.1.21" /inference="protein motif:TFAM:TIGR01162" /note="KEGG: chy:CHY_1069 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase, catalytic subunit" /protein_id="YP_002457960.1" /db_xref="GI:219667525" /db_xref="InterPro:IPR000031" /db_xref="GeneID:7258441" /translation="MNLVGIVMGSDSDFNVMEDAIKVLKEFGVSFEVKVSSAHRTLER TLNWVKEFEGQGGKVIIAGAGMAAHLPGVVAGATTLPVIGVPIRSGALEGVDALYAIV QMPPGIPVATVGINAAKNAGLLGVQMLANADDQLKEALHNYRVKMAQGVEEKDKALQE KLQK" gene 1568382..1569677 /locus_tag="Dhaf_1473" /db_xref="GeneID:7258442" CDS 1568382..1569677 /locus_tag="Dhaf_1473" /inference="protein motif:TFAM:TIGR00928" /note="TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: hmo:HM1_3112 adenylosuccinate lyase" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="YP_002457961.1" /db_xref="GI:219667526" /db_xref="InterPro:IPR000362" /db_xref="InterPro:IPR003031" /db_xref="InterPro:IPR004769" /db_xref="GeneID:7258442" /translation="MIERYTLPEMGRIWTDEHRLELWLKIEIAACEGWAKLGRIPEDA VKVIRERAAFSWERVKEIEEITHHDVLAFTTNVAEYVGEEAKYIHLGLTSSDVLDTAL SLQMVEAADILLAKLVRLEEVLKERALEHKDTLMMGRTHGIHAEPITMGLKFALWYEE IKRQISRLQFAREEIRVGKISGAVGTFANVEPFVEEWVCESLGLKADPISTQVVQRDR HAFYVTALAGVASSLDRIATELRNLQRTDVHEVEEPFAKGQKGSSAMPHKKNPITGER ICGMARVIRSNAQTALENVALWHERDISHSSAERIILPDSTIALDYMLDKMIKLIQGL RVYPETMQENINKVVGLIFSQRVMLSLVEKGLSREDAYAWTQRNAMQAWETKEAFQSL VLKDQDIRKYLGEEEIAELFDYSYHTKHVDTIFKRVGLL" gene 1569795..1570511 /locus_tag="Dhaf_1474" /db_xref="GeneID:7258443" CDS 1569795..1570511 /locus_tag="Dhaf_1474" /EC_number="6.3.2.6" /inference="protein motif:TFAM:TIGR00081" /note="catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamide synthase" /protein_id="YP_002457962.1" /db_xref="GI:219667527" /db_xref="InterPro:IPR001636" /db_xref="GeneID:7258443" /translation="MEKGQMLYEGKAKKVYTTDQEGIYWVEYKDDATAFNGEKKGTIG DKGIVNNRLSALLFEVLEKTGIPTHFIELLNDREMLVRKLEMIPLEVVVRNIAAGSLA KRLGVAEGLNLSRPVVELYYKDDALGDPFVNESHSLAMGWAEQSDLKEIQELGLKING ELQKILDQAGIILVDFKLEFGKAEGKVYLGDEISPDTCRFWDKETQEKLDKDRFRRDL GKVEEAYAEVYRRVKEVLKD" gene 1570530..1571948 /locus_tag="Dhaf_1475" /db_xref="GeneID:7258444" CDS 1570530..1571948 /locus_tag="Dhaf_1475" /inference="protein motif:TFAM:TIGR01134" /note="Catalyzes first step of the de novo purine nucleotide biosynthetic pathway" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="YP_002457963.1" /db_xref="GI:219667528" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005854" /db_xref="GeneID:7258444" /translation="MREPWDDKPHEECGVFGIYAPEQEVARLTYFGLYALQHRGQESA GIAVSNGRDIQVHKGMGLVAEVFSERILKELEQDGKMAIGHVRYSTTGSSLLTNAQPL VVHYQKGMMALAHNGNLTNAGELREELAKEGAVFQTTVDSEVIVQLIARYGRGSLEDA LVKTMLDLQGAYALVVAAEDKILGMRDPHGVRPLCIGQLEGRYVLASESCGLDTIGAE FVRDVQPGEIVTIDEEGLHSRQGFPAQKTAVCAFEYIYFARPDSTMDQLNVTESRRRM GVELAREYPVDADIVIPVPDSGMTAALGYAEESGIPFAQGLLKNRYVGRTFIQPTQEM REVAVRLKLNANAQVIKGKRVIMIDDSIVRGTTSSRIVELLRKVGAKEVHLLICSPPV LYPCYYGIDTAEREKLIATQLDREGIRDYVGADSLHYLSEEGVQRALGELSVCLACFN GDYPAGIPAGTREKWAEFKSKC" gene 1571990..1573009 /locus_tag="Dhaf_1476" /db_xref="GeneID:7258445" CDS 1571990..1573009 /locus_tag="Dhaf_1476" /EC_number="6.3.3.1" /inference="protein motif:TFAM:TIGR00878" /note="catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole synthetase" /protein_id="YP_002457964.1" /db_xref="GI:219667529" /db_xref="InterPro:IPR000728" /db_xref="InterPro:IPR004733" /db_xref="InterPro:IPR010918" /db_xref="GeneID:7258445" /translation="MGYSYRQAGVDIDAGNQAVELMKPAVKRTVRPEVMGGLGGFGGL FALDLKKYPEPVLVSGTDGVGTKLKLAFQMNRHDTIGQDAVAMCVNDILVQGAEPLFF LDYLAVGKLVPERVAQVVGGIAKGCELAGCALIGGETAEMPGFYDEGEYDIAGFAVGA VNRPDLIDGSQIQAGDVLIGLPSSGFHSNGYSLVRKIFTPDLWEKNYPELGETLGEAL IRPTRIYVKTVLPLIESRKVLGMAHITGGGLTENIPRILPEGLGIKIARSAWQVPALF TLLQRLGEVEEAEMLRTFNMGIGFVLIVHPEDVDFIQTQLQAAGEKCFVLGEVSGQSE GVSYL" gene 1573006..1573608 /locus_tag="Dhaf_1477" /db_xref="GeneID:7258446" CDS 1573006..1573608 /locus_tag="Dhaf_1477" /inference="protein motif:TFAM:TIGR00639" /note="TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pth:PTH_2543 folate-dependent phosphoribosylglycinamide formyltransferase PurN" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="YP_002457965.1" /db_xref="GI:219667530" /db_xref="InterPro:IPR001555" /db_xref="InterPro:IPR002376" /db_xref="InterPro:IPR004607" /db_xref="GeneID:7258446" /translation="MMRIGVLASGRGSNLQALIEAWKLGELNGELVAVGSDHEEALAL KRAEEAGIPHGAFPLSRFSSRQEQEKAILTWLREQKVEILVLAGFMRVLSKEFLQDIQ IPVLNIHPSLLPSFQGLHAQRQALDYGVKISGCTVHFVDEGLDSGPIIAQEAVPVLPG DTEDSLSARILEAEHRLYPEAVGWVVGGRIKRNGRIVVKL" gene 1573661..1575217 /locus_tag="Dhaf_1478" /db_xref="GeneID:7258447" CDS 1573661..1575217 /locus_tag="Dhaf_1478" /EC_number="3.5.4.10" /inference="protein motif:TFAM:TIGR00355" /note="KEGG: mta:Moth_2044 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase" /protein_id="YP_002457966.1" /db_xref="GI:219667531" /db_xref="InterPro:IPR002695" /db_xref="InterPro:IPR011607" /db_xref="InterPro:IPR013982" /db_xref="GeneID:7258447" /translation="MNRRAVLSVSNKTGLVELARGLVELGFDLISTGGTFKTLTEAGL PVRYVTEVTGFPEILDGRVKTLHPRIHGGILARATAEHLQQLEDNGIGLIDLVVVNLY PFKETIARPGVSFQEAIENIDIGGPSMVRAAAKNQERVSIVVNPERYPEVLQALREQG EISYDMRKRLAAEAFAHTAEYDQCIAGYLTAALAEESVSSSSSPFPATITLGGQKAQD LRYGENPAQKAAFYRGADAAGTLAYGEQIQGKELSYNNWMDMDAAWGIVQDFSEPACA IIKHTNPCGTALGKTALEAYEKALAADPVSAFGGIIAFNRTVDAECAASLKAHFYEVI VAHEFSSDARAILQEKKNLRLVKVAQDGKPAHTPWKVRSIQGGFLIQEEDEGTTPISA WEVVSKRQPEPEELRELDFAWRVVKHVKSNAIVLAKAGQTLGVGAGQMNRVGSVKIAL EQAGDKAQGAYLASDAFFPFPDSLEEAAKAGVRAVVQPGGSVRDAEVIEAADRLNLIM VFTNRRHFKH" gene 1575754..1575972 /locus_tag="Dhaf_1479" /db_xref="GeneID:7258448" CDS 1575754..1575972 /locus_tag="Dhaf_1479" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457967.1" /db_xref="GI:219667532" /db_xref="GeneID:7258448" /translation="METGRFQPAIEQERFGGTKPGRGFRPSRDATENDSAAQVLSERR ALRVSFVRAAYGATGVKQNPGESALEFS" gene 1576007..1577266 /locus_tag="Dhaf_1480" /db_xref="GeneID:7258449" CDS 1576007..1577266 /locus_tag="Dhaf_1480" /EC_number="6.3.4.13" /inference="protein motif:TFAM:TIGR00877" /note="KEGG: drm:Dred_2361 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201" /codon_start=1 /transl_table=11 /product="phosphoribosylamine/glycine ligase" /protein_id="YP_002457968.1" /db_xref="GI:219667533" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR003806" /db_xref="InterPro:IPR011761" /db_xref="GeneID:7258449" /translation="MAKKVLIVGNGGREHALAWKIAQSPEVGKLYVAPGNAGTQEWNV AIAATDIPGLLEFAQKEGIDLTIVGPEAPLTLGIVDAFQKEGLRIFGPTQEAARLEGS KSFAKEIMEAAGVPTAQSRVFSEPEQAKEYIKQMGAPIVLKADGLAAGKGVIVAMDLD TALTAVDELMDGSLGESGKLLLVEEYLEGQEVSLLCLCDGEHAVALVPVQDHKRALDG DLGLNTGGMGTYSPPPFWNPELEEEALRTIVQPTLQVMKDKGMPFQGVLFAGLMLTKD GPKTLEFNVRFGDPETQVVMARMESDLFKVLWACTEGQIENLKLAWKKETALCIVMAA PGYPLAYAKGIPITLPEVPAQESVIFHAGTALSQGGELQSSGGRVLGVTAWGDDLNQA RQLGYALVEKINFPGAHYRKDIGVKGL" gene 1577346..1577900 /locus_tag="Dhaf_1481" /db_xref="GeneID:7258450" CDS 1577346..1577900 /locus_tag="Dhaf_1481" /inference="similar to AA sequence:KEGG:Amet_3653" /note="KEGG: amt:Amet_3653 manganese containing catalase" /codon_start=1 /transl_table=11 /product="manganese containing catalase" /protein_id="YP_002457969.1" /db_xref="GI:219667534" /db_xref="GeneID:7258450" /translation="MYIYRKRFFYPIHVERPDPVLAKELLEHYGGRDGELTQAVQYLN HQVNIDNRFLRELLGLIMAEELAHLETLSAMITKLGGEVTRLSDHEDTPWSLSYVNQY SEPDKLLKANAALEKRARLLYEKHAAMTQDPGVKRLLTFLARREGVHQRLLYRCYKVL TEGGTSEQYMEIIYEYKMSLQVLE" gene 1578078..1579433 /locus_tag="Dhaf_1482" /db_xref="GeneID:7258451" CDS 1578078..1579433 /locus_tag="Dhaf_1482" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: abc:ACICU_00213 major facilitator superfamily permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002457970.1" /db_xref="GI:219667535" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258451" /translation="MSISQRIEKLPVKRFHYILLISAGLGWMFDSMDTGIISFVLPVL MKTWGLTPEQVGNIGSVGLLGMALGAILSGSVADRIGRKKVFAFTLVVYSLATGLCGL AWSYASLLFFRFLVGFGLGGQLPVAVTLVSEFTPAKHRGKFLVLLESFWAIGWLLASV ISYLIIPNYGWHIAFFIGAIPALYVFYLWKYIPESPRFLEEQGRIQEAEAVYRLVAGE AGPDVKAGRTAEEAKREHRQPQKGTAKTKVLKRVTVAELFSRKFLRRTVFLWLLWFGI VYSYYGIFTWLPSILALKGFSLTKSFSYVIIMTLAQIPGYFSAAFLVDRIGRKPTLAA FVLGTAISAYFFGLGNSVMMILVFGSLMSFFNLGAWGILYTYTPELYPTRARGTGAGW AAGFGRIGGILAPMVVGRMLGAEMPTETVFLMFAGVLILVVFNVLILGEETKGRPMDE L" gene complement(1579428..1580129) /locus_tag="Dhaf_1483" /db_xref="GeneID:7258452" CDS complement(1579428..1580129) /locus_tag="Dhaf_1483" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457971.1" /db_xref="GI:219667536" /db_xref="GeneID:7258452" /translation="MNSFDKKIQTRLRMHPEMLRHILTEPNEETLTTLTRYKLFESKG AYLGQLLLSLLPQWEYLACEGNAHLGQIIRNLEKTPISPVSQESDFLRANLLRIRILA ETPGVFPFSPFIIQEHLLNFLEGADLIADLPQLTVINFSRDELRPLASELAQYRLSPL SRRYVQNLFHQERQEAILANLAYLCKNYPLLGTCRQAYALLLSLDNIENWSKHPFCLR LVSNRFWDYRTKEIL" gene 1580338..1580757 /locus_tag="Dhaf_1484" /db_xref="GeneID:7258453" CDS 1580338..1580757 /locus_tag="Dhaf_1484" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cdf:CD2076 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457972.1" /db_xref="GI:219667537" /db_xref="GeneID:7258453" /translation="MDNEKFQDLMLEHFGKVLNELTGMKTELTEVKQDVAGIKAELTE VKQDVTGLKESQTRMETDLVVLRQSQVRMEQDFGRKLDILFYDWRETQKQFNEEVKSE IKILGTKVEALQMESSKHDREIKDLYLVNLAKGKSKD" gene complement(1580855..1581700) /locus_tag="Dhaf_1485" /db_xref="GeneID:7258454" CDS complement(1580855..1581700) /locus_tag="Dhaf_1485" /inference="protein motif:TFAM:TIGR00363" /note="TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: tpd:Teth39_1334 YaeC family lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein, YaeC family" /protein_id="YP_002457973.1" /db_xref="GI:219667538" /db_xref="InterPro:IPR004478" /db_xref="InterPro:IPR004872" /db_xref="GeneID:7258454" /translation="MKRKLSTLIIGSVVALSLVLTGCGSTPQKTDTPPASGNANEPVT IKVGATPVPHAEVLEFVKPKLAEQGINLEIVDFTDYALPNPAVNDGLLDANYFQHTPY LDTYLAQGMKLAIIGTVHIEPMGFYSEKVTKIDELKDGDAIAIPNDPSNGGRALAVLE QAGLIKLKDGAGVTATELDIAENPKKLKIQAIEAAQLPHALTDPKIAGAVINTNYALE AGLNPTEDAIVLEGKDSPYANIVVAKEDRKDDPNLKKLVEALNTPEVKKFIEDTYKGA VVPAF" sig_peptide complement(1580855..1580947) /locus_tag="Dhaf_1485" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.445 at residue 31" gene complement(1581885..1582562) /locus_tag="Dhaf_1486" /db_xref="GeneID:7258455" CDS complement(1581885..1582562) /locus_tag="Dhaf_1486" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_2653 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002457974.1" /db_xref="GI:219667539" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258455" /translation="MFDFTNPQYWETIYQLLVPATGETLYMVMASTLLAYLLGVPLGV ILVISSPDHISPNPWIERTLGTVINIFRSAPFIVLLLALIPVTQAIMGTYIGTDAAII PLVFATAPFVARMVESSLKEIPYGVIEAALSMGSSPWQIIRKVLLPEAKASLILGAAI TTISVVGYTAMAGTIGAGGLGDVAIRYGHQRFRTDVMIMTVIILVIIVQLVQLFGTKL ARRISNH" gene complement(1582555..1583577) /locus_tag="Dhaf_1487" /db_xref="GeneID:7258456" CDS complement(1582555..1583577) /locus_tag="Dhaf_1487" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; ABC transporter, conserved site; SMART: AAA ATPase; KEGG: drm:Dred_2652 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002457975.1" /db_xref="GI:219667540" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258456" /translation="MIRIENLTKVYTSRKEQVTAIEDISLHIPKGAIYGIIGLSGAGK STLVRCINRLEEPTGGKIIIDGQNLTAMSAAELRQARQKIGMIFQHFHLLQSRTVFDN IAFPLEIAGFKKPEIAERVKELLPLVGLEDKAHVYPSQLSGGQKQRVGIARALATNPK VLLCDEATSALDPQTTLSILNLLKDINQRFGLTIIMITHEMKVVKEICTDVAVIHESK IAEQGPVESVFIQPQSSVAKEFISTVFPNELPEDLLRELATHPNSQIVRIQFLGSRAS DPIIADLMKECEVRANILYGSIDHLRSTLFGTLTLELQGDPGQLALAHQYLAQRELKV EVIQNV" gene 1583957..1584298 /locus_tag="Dhaf_1488" /db_xref="GeneID:7258457" CDS 1583957..1584298 /locus_tag="Dhaf_1488" /inference="protein motif:TFAM:TIGR02531" /note="TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: hmo:HM1_3054 trpr-like protein yerc/yecd, putative" /codon_start=1 /transl_table=11 /product="TrpR like protein, YerC/YecD" /protein_id="YP_002457976.1" /db_xref="GI:219667541" /db_xref="InterPro:IPR000831" /db_xref="InterPro:IPR013368" /db_xref="GeneID:7258457" /translation="MMDEYKDDDFKGIDQRLRDSSTDALFDAILLLKDREECYRFFQD IATVAEIKSLAQRLEVAKLLEKNVTYTTIAQSTGASTATISRVKRCLYFGADGYQMVL KRLEEKEKGGD" gene 1584300..1585451 /locus_tag="Dhaf_1489" /db_xref="GeneID:7258458" CDS 1584300..1585451 /locus_tag="Dhaf_1489" /EC_number="6.1.1.21" /inference="protein motif:PRIAM:6.1.1.21" /note="PFAM: tRNA synthetase class II (G H P and S); KEGG: hmo:HM1_3053 histidyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="Histidine--tRNA ligase" /protein_id="YP_002457977.1" /db_xref="GI:219667542" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR006195" /db_xref="GeneID:7258458" /translation="MLRSSLGLRIPEGMHDLLPDELALQERAEASALDLFKAWAYQKV VTPTLEYGACIQPVEEEEDSFFKLFDRQGHVLVLRPELTTPIARMVSTRMRGTTFPLR LCYAADVFRYSKSHKQEFRQVGVELIGSASPAADAEVVALAIEALRQIGGMDFQINLG HMGIFTGIMAELGVPQEFQLHYQEKLARKDFVGIERLVKDYGFELKVQDVLLKLPHLH GQEDMLDQVLEWSRRPSLLEAVAALRQVYRYLKDFGVQDYVSLDLGILRGFSYYTGAV FEGYVPGVGFPVVEGGRYDALYGEFGEDVPATGFAINLKAIIEQMACSNAESPEVFVC GSDVSQVIAEARKLRQTGKRVEMCLEPLTREQAVASADRKGIKEIVCVR" gene 1585725..1586759 /locus_tag="Dhaf_1490" /db_xref="GeneID:7258459" CDS 1585725..1586759 /locus_tag="Dhaf_1490" /inference="similar to AA sequence:KEGG:Mmwyl1_4371" /note="KEGG: mmw:Mmwyl1_4371 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457978.1" /db_xref="GI:219667543" /db_xref="GeneID:7258459" /translation="MDNKKKRQDKLQIRNSTAEFLIFSSQANENTIEVRVEDETVWLT QKLIAQLFDKSRNTITEHLQNIFNEGELDENSVCREFRHTGTDGKEYNTKFYNLDAII SVGYRVNSIRATQFRQWATGVLRTFAIKGYVLDKERLKNGTFLNEDYFEHLLEEIREI RASERRFYQKITDIYATAVDYNLHTKLTKDFFKTVQNKLHYAIHGCTAAEVIYNRADS IKAHMGLTTWKNAPHGKIVKSDVSVAKNYLSEKEIRSLDRFVTMYLDYAESQAEKNIP MTMEDWAKRLNAFLQFNEKDILENAGKVTTAIAKEFAEGEFEKYRVIQDRLFMSDFDR LIDSIGNDQE" gene 1587336..1588007 /gene="hisG" /locus_tag="Dhaf_1491" /db_xref="GeneID:7258460" CDS 1587336..1588007 /gene="hisG" /locus_tag="Dhaf_1491" /EC_number="2.4.2.17" /inference="protein motif:TFAM:TIGR00070" /note="short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase catalytic subunit" /protein_id="YP_002457979.1" /db_xref="GI:219667544" /db_xref="InterPro:IPR013820" /db_xref="GeneID:7258460" /translation="MARNFLTIALPKGKLLTDSLEVLTKIGIECQEVSEESRKLVFPL EKAQAQIIICRPTDIPTFVEYGAADIGFVGKDTLLEENKDVVELLDLGFGYCRFVVAM PEEKVPPRLPDGKFDLSGLNHQRVATKFPRVAEDFFREQGMQVLPIKLHGNIELAPRV GLAEMIVDIVSTGTTLRQNKLVEIAPILEATTRLIANRVAYRMKHERINELTERLRQL LGRAP" gene 1588043..1589323 /gene="hisD" /locus_tag="Dhaf_1492" /db_xref="GeneID:7258461" CDS 1588043..1589323 /gene="hisD" /locus_tag="Dhaf_1492" /EC_number="1.1.1.23" /inference="protein motif:PRIAM:1.1.1.23" /note="catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer" /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="YP_002457980.1" /db_xref="GI:219667545" /db_xref="InterPro:IPR001692" /db_xref="GeneID:7258461" /translation="MEIKTLEELDLTMLTRKSYGDDQLLEHKVAEILSEIKKEGDSAL YALTEKFDGVDLRPSGLRVRAEELVKAYSQVDEEFLAALRLAKEKITSYHEKQKRTSW LDAQEDGSILGQLLLPLKRVGIYVPGGTAAYPSSVLMNAVPAVVAGVEEIVMVSPPRK DGSLLPEVLVAAAEAGVTEIYKVGGAQAIAALAFGTGEISPVDKITGPGNIYVTLAKK QVFGTVDIDMLAGPSEILILADESAQPEELAADLLSQAEHDPLASSILVSPDRKVLEE TVAEVERQLKLLPRQDIARASWETYGAAILVKDLAEGMNLVNQIAPEHFELVIKEPYS WLGRVRNAGAVFLGRFSPEPVGDYFAGPNHVLPTGGTARFYSPLNVDTFMKKVSVISY SEKALQRDGKHIAHLARKEGLEAHARAVEARKLW" gene 1589317..1590399 /locus_tag="Dhaf_1493" /db_xref="GeneID:7258462" CDS 1589317..1590399 /locus_tag="Dhaf_1493" /inference="protein motif:TFAM:TIGR01141" /note="TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: hmo:HM1_3049 histidinol-phosphate aminotransferase" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="YP_002457981.1" /db_xref="GI:219667546" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR005861" /db_xref="GeneID:7258462" /translation="MVDKMNLEEWMRPSIRTLKAYESKSIPDCVRLDANENPLPWPPG MIEQLLGSAIAFNRYPDGGAQELKEALSRYTGVPAEGILTGNGSDELIQLLMTTFGGE KGAVVIHPPTFSMYEAAARVTGTEVLEVPLLLTETSRDFRLDVEGILKAAAQPQVHMI VLCNPNNPTGTLFPREEILRIVAESGKIVIVDEAYGEFSGESVVDQIPYCPNLLVMKT FSKLFAMAALRLGYLLGQPSIIGALNRARQPFNVNSFSQKAGVIALNYGEEYAEQGRI LIAELARIAEALTAFASVKVFATRANFLLFQPEDPDRVYQELIGKGFLIRTMGNLPLV GKALRLSTGLPEENERLIKALGEILK" gene 1590449..1591033 /locus_tag="Dhaf_1494" /db_xref="GeneID:7258463" CDS 1590449..1591033 /locus_tag="Dhaf_1494" /EC_number="4.2.1.19" /inference="protein motif:PRIAM:4.2.1.19" /note="PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: mta:Moth_2034 imidazoleglycerol-phosphate dehydratase" /codon_start=1 /transl_table=11 /product="Imidazoleglycerol-phosphate dehydratase" /protein_id="YP_002457982.1" /db_xref="GI:219667547" /db_xref="InterPro:IPR000807" /db_xref="GeneID:7258463" /translation="MREAHIERQTKETRIRVKLNLDGAGTAQVDTGIGFFDHMLEALA RFGYLDLEVAAEGDLQVDPHHTIEDCGIVFGQAIREALGERRGIERVGDTLLPMDEAL VQVALDLSNRPYLVWDVECPEGMVGGFPVEMAEEFFRAVSVQAGITLHMRLFSGKNRH HILEAIFKGFGRALGLALRENPRFQGVLSTKGVL" gene 1591050..1591685 /gene="hisH" /locus_tag="Dhaf_1495" /db_xref="GeneID:7258464" CDS 1591050..1591685 /gene="hisH" /locus_tag="Dhaf_1495" /inference="protein motif:TFAM:TIGR01855" /note="with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisH" /protein_id="YP_002457983.1" /db_xref="GI:219667548" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR002161" /db_xref="InterPro:IPR010139" /db_xref="InterPro:IPR011698" /db_xref="InterPro:IPR011702" /db_xref="GeneID:7258464" /translation="MIGIIDYGRGNLRSVEKALWKLGYPAKVLESPAELMAVKGIILP GVGAFADAMAALEEKGWIQPLIHYAHSGKPFLGICLGMQVLFEVGEEHGEHKGLGLLP GRVVRFPAGRKIPHMGWNTLHQEKPCRLLEGIPDEAYFYFVHSYYVASEEQEILAGMS DYGVPFPALVGRDNVWGAQFHPEKSSPWGLKLLENFGKWVNEDATVSSHRS" gene 1591651..1592403 /locus_tag="Dhaf_1496" /db_xref="GeneID:7258465" CDS 1591651..1592403 /locus_tag="Dhaf_1496" /EC_number="5.3.1.16" /inference="protein motif:TFAM:TIGR00007" /note="catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide" /codon_start=1 /transl_table=11 /product="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase" /protein_id="YP_002457984.1" /db_xref="GI:219667549" /db_xref="InterPro:IPR006062" /db_xref="InterPro:IPR006063" /db_xref="GeneID:7258465" /translation="MRMRLFPAIDLKEGKAVRLLQGRMEDATVYGEQPVEVARKFKEQ GADSLHVVDLDGAFAGKPVNDAVILKLIQSSGLRVQVGGGIRTLERIEELLKLGVERV ILGTVAVRNPELVEKAVQRFEEAVVIGIDAKDGLVAVQGWAEKTEIKALDLALRMKKV GVKHLVFTDISRDGMLQGPNIQSTVELARLSGLQVVASGGVSRLEDLRLLQEEANRGV SLEGAIVGKALYAGAFSLAEALRVVGQRSEGK" gene 1592425..1593186 /locus_tag="Dhaf_1497" /db_xref="GeneID:7258466" CDS 1592425..1593186 /locus_tag="Dhaf_1497" /inference="protein motif:TFAM:TIGR00735" /note="catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisF" /protein_id="YP_002457985.1" /db_xref="GI:219667550" /db_xref="InterPro:IPR004651" /db_xref="InterPro:IPR006062" /db_xref="GeneID:7258466" /translation="MLAKRIIPCLDVHEGRVVKGTNFVNLRDAGDPVELAALYDREGA DELVFLDISASAEGRETMVEVVRRTAEQVFIPFTIGGGLRRVEDIRKMLRAGADKVSL NTSAVQTPGLIEEGAHAFGSQCIVVAIDARQTRPGAWEVYIHGGRTPTGKDVLQWAEE VERLGAGEILLTSMNRDGTKNGYDLELTRAVSRAVSLPVIASGGVGTLEHLAEGLTIG EADAVLAASIFHYQEYSIGEAKAYLEERGIPVRKG" gene 1593243..1593923 /locus_tag="Dhaf_1498" /db_xref="GeneID:7258467" CDS 1593243..1593923 /locus_tag="Dhaf_1498" /inference="protein motif:TFAM:TIGR03188" /note="TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: gtn:GTNG_3020 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein" /codon_start=1 /transl_table=11 /product="phosphoribosyl-ATP diphosphatase" /protein_id="YP_002457986.1" /db_xref="GI:219667551" /db_xref="InterPro:IPR002496" /db_xref="InterPro:IPR008179" /db_xref="GeneID:7258467" /translation="MNTSNSKESQTQLPQGIRWNADGLIPVVVQDVDTREVLMLAYMN EEALRRTLQEGRAWYYSRSRQSLWLKGETSGHTQEVVDLRFDCDRDTILLTVRQKGVA CHEEFYSCFHYGVQGEGYVTLGAPEEVPAIPLGRTMELLAEVIHSRNMERPEGAYTTY LFDKGLDKILKKVGEECAETIIAAKNSSAEEIRYEVSDLIYHVLVLLEERGVSLEAIS QELLSRRK" gene 1594204..1595346 /locus_tag="Dhaf_1499" /db_xref="GeneID:7258468" CDS 1594204..1595346 /locus_tag="Dhaf_1499" /inference="protein motif:PFAM:PF02424" /note="PFAM: ApbE family lipoprotein; KEGG: cth:Cthe_0561 ApbE-like lipoprotein" /codon_start=1 /transl_table=11 /product="ApbE family lipoprotein" /protein_id="YP_002457987.1" /db_xref="GI:219667552" /db_xref="InterPro:IPR003374" /db_xref="GeneID:7258468" /translation="MLQSARLVTISNKEGLEIKELELLFDKKKCGRKKLSFVAVALIT LGLLTACNGKPVQQEEVKKFESTDIAMGTVISQRVFGDNGQAAIDAALEKIKSLEALL TFNAPGGDVNKLNDYAGKQSVELQPETLLVLKESQEVAELSGGAFDVTVGPIVKSWGI GTDNARIPSETELKELLPLVNYKNLLIEGNTAYLKQAGQMVDLGGIAKGYAGDAAIEV YKKQGITSAFINLGGNVVTLGTKPDGSSWTVGVRNPRPAGEEDQIVGMITVADKAVVT AGDDQRYFEVDGVRYHHILNPHTGYPAQSDLMSVTLVTDSSLLADALDTAVYILGLEK GREMLENYGGVEAVFITRDKKIYVTDGLKDSFEFFDESKEYEFVKD" gene 1595385..1595774 /locus_tag="Dhaf_1500" /db_xref="GeneID:7258469" CDS 1595385..1595774 /locus_tag="Dhaf_1500" /inference="protein motif:PFAM:PF07009" /note="PFAM: protein of unknown function DUF1312; KEGG: cth:Cthe_0562 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1312" /protein_id="YP_002457988.1" /db_xref="GI:219667553" /db_xref="InterPro:IPR010739" /db_xref="GeneID:7258469" /translation="MQAEGKRKKGDLLIILVVLIIGVGAAVPWLWNQLNPGGGNGEHE RIAVITRDGKEVARINLDKVTEPQHFHYEGGIALTIVAENGKIRFLESQCPDQICVKT GSLSKPGDFAACLPAGTIVTIEGDEYE" gene 1595767..1596390 /locus_tag="Dhaf_1501" /db_xref="GeneID:7258470" CDS 1595767..1596390 /locus_tag="Dhaf_1501" /inference="protein motif:PFAM:PF07456" /note="PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cth:Cthe_0563 heptaprenyl diphosphate synthase component I" /codon_start=1 /transl_table=11 /product="Heptaprenyl diphosphate synthase component I" /protein_id="YP_002457989.1" /db_xref="GI:219667554" /db_xref="InterPro:IPR010898" /db_xref="GeneID:7258470" /translation="MNRNKRFAIIIILVTNAIIISFLESFIPVPIPVPGIKLGLGNII TMIAIAFLGLKDVLFIVVVRCFVVAILTRGVMMLAFSLTGGLLSALVMWLLYKKLSRF FSIKGVSIVGAIVHNTTQITVASFILGQVVVFYYLPILLISAVVTGLITGSIGELAIN EVSKKDIFAKTAEPDVNEEEQIPFKSEEDEDLPRAEIKTGMIERREE" gene 1596492..1597277 /locus_tag="Dhaf_1502" /db_xref="GeneID:7258471" CDS 1596492..1597277 /locus_tag="Dhaf_1502" /inference="protein motif:PFAM:PF02361" /note="PFAM: cobalt transport protein; KEGG: bpu:BPUM_0134 cobalt ABC transporter" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_002457990.1" /db_xref="GI:219667555" /db_xref="InterPro:IPR003339" /db_xref="GeneID:7258471" /translation="MNSDEENKGLNKAECFRMDGLIKLILAILLMVMPFWFRSSLSFG LLSAYLILVAWIFKINLRTLMISGASFGIIVLIPYFFGLMMNAVFFHFSQNPMFAFQG FGAVLLRLFKLFVIWYISILYFHTTPMRTFIGMLDKFFLPLNKLGLPVQDYLKIIMCI VAQLKDTGSEVKKSLGDKMRTVVGEGKRKFKINVKGISQVIVNLIVDSFDKIDKIQEY VDKVSPEELYHYHFKFSLKDGVALASFLALAVMIWLIENGIIL" gene 1597704..1598951 /locus_tag="Dhaf_1503" /db_xref="GeneID:7258472" CDS 1597704..1598951 /locus_tag="Dhaf_1503" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_2312 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002457991.1" /db_xref="GI:219667556" /db_xref="GeneID:7258472" /translation="MKKIKSLASVIALGTVLVLSGCSGGQTTPATAVKDPAPAQEAKY KEGIYFAQSDFDGGWKYTATIEVKDGKIVTADWNGANEKGGPDKDTFSASGQYGLVAK GKAQAEWHEQAQKAEAYLIETQDPTKITFKDNEGHTDDIAGVSIHVNEFFDLAKQALD AGPVGKGPYQDGAYYAEDAMYGSGGWKYFASLTVINGNIVAADWNGLNVNGGKDKDTL SADGEYGLVEKGKAQAEWHEQAKKAEAYLLKTQDPTKITYKDDAGHTDDIAGVSIHVV EFFDLAKAALDKGPIAQGSYKDGIYYAAEEAFKGGWKYMTSIVVKNGTIVGVDWNGIP EDATKPNKDVQSTEGDYKLAPGNQGEWAVQAQKAEAYLLKTQDPTKINYKDDAGHSDD IAGVSVTVGEFFKLAQKALEGAK" sig_peptide 1597704..1597781 /locus_tag="Dhaf_1503" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.638 at residue 26" gene 1599098..1600198 /locus_tag="Dhaf_1504" /db_xref="GeneID:7258473" CDS 1599098..1600198 /locus_tag="Dhaf_1504" /inference="protein motif:PFAM:PF02424" /note="PFAM: ApbE family lipoprotein; KEGG: tte:TTE2482 thiamine biosynthesis lipoprotein" /codon_start=1 /transl_table=11 /product="ApbE family lipoprotein" /protein_id="YP_002457992.1" /db_xref="GI:219667557" /db_xref="InterPro:IPR003374" /db_xref="GeneID:7258473" /translation="MQNLRPSSFKSRLLVMLICVCLSFSLVGCLSAETKVKEFEPVVE TTFLMGTVAKITIYDEIKDNEIFQRVFDRLTDIEQRMTINDDYPNSEIIQLNKASGKE FVKINPDTFYVLEKAKYLAELSQGKFDITVGPIVKLWNIGSDNARVPGIDEINKKLPL VDYHNLILDKDNSSAKLNQEGMVVDLGAIAKGYAADEAVKILKEAGIEHAIVNLGGNI VAMNTKLDGSLWRLGLQDPYEIRGKSMGVVLLNDQTMVSSGTYERYFEEGGKVYHHLI DPDTGYPGENGLISVSIITKESINADGLSTGTFLLGLEEGMKMIEKIPDTEAIFITAD KKVYVTSGINSSNFEITNPDYHLQTTPSPESK" sig_peptide 1599098..1599196 /locus_tag="Dhaf_1504" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.632 at residue 33" gene complement(1600288..1602033) /locus_tag="Dhaf_1505" /db_xref="GeneID:7258474" CDS complement(1600288..1602033) /locus_tag="Dhaf_1505" /inference="protein motif:PFAM:PF00070" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ckl:CKL_0432 CoA-disulfide reductase-related protein" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002457993.1" /db_xref="GI:219667558" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR001425" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7258474" /translation="MKKKVLIVGGVAGGASAAARLRRLDEDAEIILFERDDYISFANC GLPYYIGGTITKRERLMVQTPEDMQARFNIDVRIRSEVIRLDAANKKVLVRSQSRGTY EESYDALILSPGAKALRPNIPGIDSERILTLRNIPDTDAIKGLVDQKGVQSAIIIGGG FVGVEMAENLREQGLNVTLVEAAPHILAPFDTDMVVLAEKKLVAHGIRLILNDGVKSF QDLENQVEVTLASNRKLQGDLIILAIGVIPDTGFLKESGLELGPKGHLIVNERMATNL PHVYAAGDAVEVLDYITKTKTAIPLAGPANKQGRIAADNIAGLNSTYKGTQGTSIIKI FELTAASTGANERTLQRANLPYHVIHIHPVSHASYYPNAYPMTLKLIFGADGRIFGAQ GIGRDGVDKRIDVISTVIRLGGTVEDLTELELAYAPPFSSAKDPVNMAGYVAQNVLTG QAHMLVWDDLNKIDEEYTFVDVRTKIEFAKGHVEGAINIPVDDLRQRIQELDPGKLIV VYCEVGLRGYFAERILTQKGYRVLNLTGGYTTYSVQGFDPNQALDDYKKDFNPYPCCA DEDIIDPDTQRIKHQ" sig_peptide complement(1600288..1600341) /locus_tag="Dhaf_1505" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.694 at residue 18" gene complement(1602052..1602336) /locus_tag="Dhaf_1506" /db_xref="GeneID:7258475" CDS complement(1602052..1602336) /locus_tag="Dhaf_1506" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: cbh:CLC_0235 ArsR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002457994.1" /db_xref="GI:219667559" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258475" /translation="MDHGYAKYNEVAELLKVLAHPVRLCIVSRLLEMGECNVTTMHTC LNAPQSTISQHLQKLRSAGIVEYRRNGLEIYYKIKNKKISQLVSDVLQEV" gene 1602520..1603203 /locus_tag="Dhaf_1507" /db_xref="GeneID:7258476" CDS 1602520..1603203 /locus_tag="Dhaf_1507" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rru:Rru_A1245 Crp/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002457995.1" /db_xref="GI:219667560" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7258476" /translation="MRGKTKGIVEELIETFSFAQELSYKQIEALVEHSNIQEVPAGTI IAEKGSYCHGLALLLSGELRVAMNSEDGREVTIYHIFKGRICPLSAACVLGDFKCNTV TVTAETDVKVIWVSRRFFARSFAESEPFYRFVINDISNRLFEATEVVDSIAFVPVRKR LAQLLFASSNGGRSPVYMTHEGFARELGTAREVISRELKGFERLGILTLSRGRLDIKD PKELEKLVQ" gene 1603557..1604615 /locus_tag="Dhaf_1508" /db_xref="GeneID:7258477" CDS 1603557..1604615 /locus_tag="Dhaf_1508" /inference="protein motif:PFAM:PF00581" /note="PFAM: Rhodanese domain protein; KEGG: fra:Francci3_2753 rhodanese-like protein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_002457996.1" /db_xref="GI:219667561" /db_xref="InterPro:IPR001763" /db_xref="GeneID:7258477" /translation="MKHRIRFQTLLGVSLLGFALAGCANTSPATVVDPGISEAPLVEQ FESVRQVVDEFLAGDKVTAMTPEELYQIVRECNGHYFLVDIRANQDFVSSNIPGSVSI PYAQTSNPERLESLPKDKTLVVIDYNGHLAAQTAATWNQLGYQAVPLLYGMQSWTKEA SPTGYEAFPAQPLNNTLVTDMTTATLGENALPEIKYPEGKTQEYIVHTTRTYLDRNYK GVITAEELDSELQQGPAEHYLLVDIREPKHYRQGHLDGAVNIPLDQLAASDQVKNYSP DQRIVLIGYDGMDASQGARSLVTLGYDCVALKYGMSYWSAQEAATGAVPVHSLVKEYY PLTPLNYLPPSTGAAGCG" sig_peptide 1603557..1603637 /locus_tag="Dhaf_1508" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.591 at residue 27" gene 1604642..1606840 /locus_tag="Dhaf_1509" /db_xref="GeneID:7258478" CDS 1604642..1606840 /locus_tag="Dhaf_1509" /EC_number="1.2.1.2" /inference="protein motif:PRIAM:1.2.1.2" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="Formate dehydrogenase" /protein_id="YP_002457997.1" /db_xref="GI:219667562" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258478" /translation="MQPISRRSFLKLAAATTTAVALPQALKMDFQAFAEEAKHAEVTR VPSLCNGCSSYCGVWAYVKNGRLWKIEGNDIHMKSRGHICARGHGIAQNVYNPGRVTQ PMKRVDNKNNFQPITWEEAFQEVGAKMKAIVEEHGGDKMVWACHGGKESYAQQFMDII GSSTYITHYATCFSAKTNIWQNMVGGMFNPDFDQAKTMLFVGRNYAGGIIPAAMKRIT EAKAKGGKIIVVDPRFCELATIADEWIPIRPGTDLAFFLGIAHTLITENLYNQSFVEQ YVYGFDEFWMHNKDFSADQAATICGIAADKIREVARELAGSAPHAFLDPGYHGLAAHY QNSNETMMLNIIINALLGNFWKAGGLFPAASTTFGHPEATYYGPVAAKGIRADGAGEV GEYPLVEPSRGIPQRIPDMIEKGRARMVFFYSYNPLRSAPEPEYQKKIKNADLVVSIP YDWNETSLYTAHYILPENHYLERTEHPKVINGNIYWPATQVATRFKALESTTSSLDLL DIMKGLTKAYGIENLYGYTVEEELEVALGPIGVSVDELREKGCIELMPSVLPKEEGLT FGTFTGKIEFSIGAWRKEGYLGVPTWVPPLVEPAEVNQFRLIHGKQPWHSHIMTTNNP YLMAITEEKKGTYMWMNSSRAGELGIQEGDWVTVSSDITSKQVQVHITEGLHPECVWL PSTYGTFSEKLELGYGQGVNYNDFIPARIDKKTGHVMGQECIVTITKGGK" sig_peptide 1604642..1604725 /locus_tag="Dhaf_1509" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.893) with cleavage site probability 0.742 at residue 28" gene 1606840..1607388 /locus_tag="Dhaf_1510" /db_xref="GeneID:7258479" CDS 1606840..1607388 /locus_tag="Dhaf_1510" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_2573 molybdopterin oxidoreductase, iron-sulfur binding subunit" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002457998.1" /db_xref="GI:219667563" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258479" /translation="MADYVMFIDPNRCTGCNACRIACQTQWGLAPTLKFNSLIEQETG KYPKVQRLITPVQCQHCDDAPCQKVCPTGATYKREDGIVLIDAQKCIGCKYCMVACPY NARVINEHGVPEKCRFCAEYVVNGETPACVSTCMNDVRVFGDLDDPGSPLHELLKNQD LIQLRADLQTKPRIYYAKSKRI" gene 1607401..1608549 /locus_tag="Dhaf_1511" /db_xref="GeneID:7258480" CDS 1607401..1608549 /locus_tag="Dhaf_1511" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: glo:Glov_3346 polysulphide reductase NrfD" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002457999.1" /db_xref="GI:219667564" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258480" /translation="MEKRKYRRSIWTYVSLLLLAFAVAGAINKYLISGEHAFGVSPDV PWGALISGYVFFAVAATGTGLVGSLGHVFRIRKFEVLSKRALLASILLLLAAFIVLAV ELSNPFKMVYLLLSPNLSSPILWMGVFYGFYLVLLFGEFFFTMKNNHKAATGIAYVSL IVKLSAIINLGRVFGFTTTRSFWDGYYYPAYMVVSAVVSGAAVLTMIHYLSGKESPGS FSQNPQGKDLARTLSQILAGGLLVFALFQAIKVGTSLGSGNQAVAQAAQALISGPMAV PFWLMEVLVGIVAPLLILYRSKFSSPGLSFWAGILTMLGLLFSRLDFVYAGQVVPLQL TDAAAKAVHVFNAYAPTWSEWSLIIGAVGLIILVFDYAESKLSLDSHH" sig_peptide 1607401..1607478 /locus_tag="Dhaf_1511" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.454 at residue 26" gene 1608570..1609238 /locus_tag="Dhaf_1512" /db_xref="GeneID:7258481" CDS 1608570..1609238 /locus_tag="Dhaf_1512" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: chy:CHY_2571 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458000.1" /db_xref="GI:219667565" /db_xref="GeneID:7258481" /translation="MNNTCASRQALQNLLQLLAEFFTFPDEEFCAAVRKGLVDLQVKE LSQGAGLPRESEFKQDALTYEEWVTAYNHCFLGVQKPFAPPIESIYKPWTGDESFQVS FKAQKGYLMGDSAHHVQHILKSFGLEIPPEYTMMPDHLIILLELLAFLVGGGFEKEAK QFCRDHFDWLPDLQKAIEALPVNGRLFMAALAELEGLLQAFLNQDQKHGPLQEMIEPA RFLN" gene 1609284..1610180 /locus_tag="Dhaf_1513" /db_xref="GeneID:7258482" CDS 1609284..1610180 /locus_tag="Dhaf_1513" /inference="protein motif:PFAM:PF00581" /note="PFAM: Rhodanese domain protein; KEGG: mma:MM_0350 putative molybdopterin biosynthesis protein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_002458001.1" /db_xref="GI:219667566" /db_xref="InterPro:IPR001763" /db_xref="GeneID:7258482" /translation="MLKHLKQSKALTLVISLLLVLSLVTGCGSAPASTTPAQPPASQE PAKPETPAQPEQPAATAPTVESNTLGWDDWSAKMKGTINKDYYIVDLRTPDEIKLEKA LEGSINIDANATLGTGNTDVIDEKLQGVAKDAVVLVHCKSGGRAKKNLQAFLDKGYVN AFALDGWTAFDAKGYFGATKITASSEQLKPDAWVAKMQGTIGKEYYVLDARDKSEYDA GHIEGALNFGVRDQFTVDHAATIAKVKEAIPNKDALVLVHCAVGARAKVAQAHLKAEG YTNVITLDNKITIDASGNYKFE" sig_peptide 1609284..1609388 /locus_tag="Dhaf_1513" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.952 at residue 35" gene 1610418..1612685 /locus_tag="Dhaf_1514" /db_xref="GeneID:7258483" CDS 1610418..1612685 /locus_tag="Dhaf_1514" /inference="protein motif:TFAM:TIGR01073" /note="TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: hmo:HM1_3029 ATP-dependent DNA helicase PcrA" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase PcrA" /protein_id="YP_002458002.1" /db_xref="GI:219667567" /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR005751" /db_xref="InterPro:IPR014016" /db_xref="InterPro:IPR014017" /db_xref="GeneID:7258483" /translation="MYRLEDLNPVQRQAVEHREGPLLILAGAGSGKTRVLTYRIAHLI AQGVEPWHILAITFTNKAAQEMRDRVYSLVGSEGRGLWVATFHSACVRILRSEIGYLP GYSRSFVIYDSGDQLALIKSCMKELNLDEKKFAPRAIEAVISDAKNKLLTPEDFSRRA KDYFEQKAERVYELYLKKLLANNALDFDDIIMLTVRLFRENPEVLSQYQDKFRYILVD EYQDTNHAQYALVNLLAKKYRNLCVVGDDDQSIYMFRGADVQNILDFERDYPEAKTLK LEQNYRSTKSILQAANSVVQNNTERKEKSLWTENEDGQPIVYYVADNEHDEARYMGER IQRLLNVEGRKFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLKFYERMEIKDILA YLRILHNPADQVSFSRVLNVPKRGLGESTLEKILDYANEQEMPVLDAIMEADYIPELQ SRAKKPLLAFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAEARLEN LREFLSVTAEYDEKADNYETAVVQEGIEDALVPGLTGFLEQVSLVAQIDSLDQADDAV VMMTIHSAKGLEFPVVFLGGMEEGIFPSSRSMLDPVLLAEERRLCYVAITRARERLYL AYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPPPTRAQKAHSAAARPAATPSG GPSPWRTGERTIGNPVQDAPGVDYKVGEKVEHAKFGKGVIVAIKGEGSSAELSVVFGG EIKKLMAEYARLVKL" gene 1612759..1614393 /locus_tag="Dhaf_1515" /db_xref="GeneID:7258484" CDS 1612759..1614393 /locus_tag="Dhaf_1515" /EC_number="3.6.1.1" /inference="protein motif:PRIAM:3.6.1.1" /note="catalyzes the hydrolysis of pyrophosphate to phosphate" /codon_start=1 /transl_table=11 /product="putative manganese-dependent inorganic pyrophosphatase" /protein_id="YP_002458003.1" /db_xref="GI:219667568" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR004097" /db_xref="InterPro:IPR010766" /db_xref="GeneID:7258484" /translation="MSKKIHVVGHRNPDTDSICAAIAYARLKQRLGMDHVIPYRAGKI NRETEFVLNAFGVEAPELLKDLHLRVKDMLNGPIPAVKPRTSLLEAWKIMKESNQKTL PVVDHTEQMIGMITVGDLSGSYIESMADHELESLHIPVENVIRTLNGRLLVGSAEQDL KGNVYVGAMRHETLEAYVGNGNIVLMGDRQTAQESVLRQGVSALILTGGATLAPELED LARQQNCVVISVPYDTFTAARLLPMTAPVQNAMKTEGIVAFNEDDLISEVKEKMLETR FRNYPVLDEQGKVVGLISRYHLLSLSRKQVILVDHNEFGQAVVGTDQAQILEVVDHHR VGGIQTGEPILFRNEPVGSTCTIVAKCYRDWDVVPEKAIAGIMLGAILSDTVIFKSPT CTEIDRENATYLASIAGVDPKEFGVQMFKAASNLGERQVDELIEEDLKEFTMGELRVG IGQFSVMGLEGLDQLRAELSQRLEEIRGQRAMNYLMLMVTDLLEENTELFISGAKPEE IAKAFDKPLDKESIFLPGVLSRKKQVVPPLSKYFLQ" gene complement(1614578..1614862) /locus_tag="Dhaf_1516" /db_xref="GeneID:7258485" CDS complement(1614578..1614862) /locus_tag="Dhaf_1516" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458004.1" /db_xref="GI:219667569" /db_xref="GeneID:7258485" /translation="MPPQAASVKTEKAARVNNLPHLPHKALLTQTRKAAQAFCFTLGS EFKQAETKLREKHAAESGWKQDVSNRPLRTSAKAVLSRSDLGGHPTERRA" gene 1615305..1617284 /locus_tag="Dhaf_1517" /db_xref="GeneID:7258486" CDS 1615305..1617284 /locus_tag="Dhaf_1517" /EC_number="6.5.1.2" /inference="protein motif:TFAM:TIGR00575" /note="KEGG: mta:Moth_2013 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase" /codon_start=1 /transl_table=11 /product="DNA ligase, NAD-dependent" /protein_id="YP_002458005.1" /db_xref="GI:219667570" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR001679" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR004149" /db_xref="InterPro:IPR004150" /db_xref="InterPro:IPR013839" /db_xref="InterPro:IPR013840" /db_xref="GeneID:7258486" /translation="MSDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIR LEKEHPEFLTPDSPSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRSMV AEVEYVVELKIDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQA DRLDVRGEGYMPKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYF AYQVLTPEEGELASQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPY DIDGLVIKVNDIAQQRELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPT AYLTPVFVAGSTVGRATLHNLDNIRAKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGG ERIFEMPELCPECQSPVIREEGEAAHRCTSITCPARQREAIIHFVSRNAMNIDGLGPA VIYQLLEAGLIKDAADLYALEYDALVPLERLGKKSAENLLKAIEDSKERGLAPLIFGL GIRHVGEKAGKILAQKYGTMEDLEKAQVEELQEIPDVGPAMAQSVAQFFQQESTHHFL NKLRQAGVVMSAQHSAKPQIFAGKSIVVTGSLQRWDRHYVETMIEEFGGKAASSVSKK TAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELLP" gene 1617403..1617687 /gene="gatC" /locus_tag="Dhaf_1518" /db_xref="GeneID:7258487" CDS 1617403..1617687 /gene="gatC" /locus_tag="Dhaf_1518" /inference="protein motif:TFAM:TIGR00135" /note="allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain" /codon_start=1 /transl_table=11 /product="aspartyl/glutamyl-tRNA amidotransferase subunit C" /protein_id="YP_002458006.1" /db_xref="GI:219667571" /db_xref="InterPro:IPR003837" /db_xref="GeneID:7258487" /translation="MKISREEVEHVAFLARLELTEEELVTNTEQLNSILDYAAMLEKL NTDDIKPTAHAVPLHNVLREDQVKPSMAREKVLANAPDAQDGFFKVPRIV" gene 1617769..1619244 /gene="gatA" /locus_tag="Dhaf_1519" /db_xref="GeneID:7258488" CDS 1617769..1619244 /gene="gatA" /locus_tag="Dhaf_1519" /inference="protein motif:TFAM:TIGR00132" /note="allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA" /codon_start=1 /transl_table=11 /product="aspartyl/glutamyl-tRNA amidotransferase subunit A" /protein_id="YP_002458007.1" /db_xref="GI:219667572" /db_xref="InterPro:IPR000120" /db_xref="InterPro:IPR004412" /db_xref="GeneID:7258488" /translation="MEMTALTIGELHELLAGKTLSATELTQGFLDRIEAVDPDIRAFI TVTKQEALAQAKAVDEKLGRGEKLGMLEGIPMALKDNLCTEGIRTTCSSKILENFIPP YQATVAEKLHDSGAVLLGKLNMDEFAMGSSTENSGFFATRNPWDPERVPGGSSGGSVA SVAADQAVYALGSDTGGSIRQPAAFCGVVGLKPTYGVVSRYGLIAYASSLDQIGPVTK TVRDNALVLNAIAGHDAKDSTSAVFEKPDYTQFLTEDIRGLRIGVPKEYFGQGLDPHV EGVLQEALRTYESLGAIVEECSLPHTEYAMPAYYLIATAEASSNLARYDGVRYGRRAE GAEDVIGMFCQTRAEGFGPEVKRRIMLGTYALSAGYYDAYYLKAQKVRTLIVRDFEEA LAKFDVLLSPTTPTTAFRIGEKSGDPLTMYLSDVCTVPINLAGIPALSIPAGFADGLP VGMQLMGKHFAEGTLYKAAYAFEKNTPFHTMKPGLGKGGAR" gene 1619244..1620698 /gene="gatB" /locus_tag="Dhaf_1520" /db_xref="GeneID:7258489" CDS 1619244..1620698 /gene="gatB" /locus_tag="Dhaf_1520" /inference="protein motif:TFAM:TIGR00133" /note="allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA" /codon_start=1 /transl_table=11 /product="aspartyl/glutamyl-tRNA amidotransferase subunit B" /protein_id="YP_002458008.1" /db_xref="GI:219667573" /db_xref="InterPro:IPR003789" /db_xref="InterPro:IPR004413" /db_xref="InterPro:IPR006075" /db_xref="InterPro:IPR006107" /db_xref="GeneID:7258489" /translation="MSIFERYEMVCGVEVHVELATKTKIFCNCSTEFGGEQNTHVCPV CLGLPGVLPVLNREVVNLAIKAGLALNCDIADFSKFDRKNYFYPDAPKNFQTSQYDLP ICKNGWLEFAVDGEKKRVGITRAHMEDDAGKLVHSGATISTSEESFVDYNRTGVPLLE IVSEPDMRSIAEVVSFLEEMVRTIQYTEVSDCRMEQGSVRFDINVSLRPHGQKEFGTR TETKNLNSFSSVRRCLEYEIERQARLLDDGEKVIQETRTWDEGKGVTLSLRSKEEAHD YRYFPEPDLVPLVIAREWVEEIRQTLPEMPGARRERYQSLGLTEYDAGVLTAAKALSD FFDEALQSYSDAKALANWVMGEFTRLLNAKQISVEESPVRPSQLAELLTLIEKGAISG KIGKTVIEAMFESGKDPEVIIKEKGLAQISDTAALLKLVDEVIAAHPQSVEDYKAGKD RAIGFLVGQIMKATKGQANPGVVNDLLKEQLAKF" gene 1621168..1621989 /locus_tag="Dhaf_1521" /db_xref="GeneID:7258490" CDS 1621168..1621989 /locus_tag="Dhaf_1521" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_1391 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458009.1" /db_xref="GI:219667574" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7258490" /translation="MEVLKGQEALQALVGVLPHIVKSLPEDMALYVTDGEKYLQAVEG SDLPIGITVGSKVWGKATEKCMVEKRKTTFNVRDGMPFKGVNIPILDENNNSVGTIIC ATGRKKQQDVNQVAEQLADTLDQMAGAMNEIASGAARLAEVGQALTEKAQLSDKKIAE TEVIINSIKSISNQTNLLGLNAAIESARAGEYGRGFGVVAQEIRKLADESKHSTEQVK VIIEAISSAVKTMILSAEESGAISQQQAAAIQENTATIDELRNVGLKLKDFAAKL" gene 1622273..1623436 /gene="aksA" /locus_tag="Dhaf_1522" /db_xref="GeneID:7258491" CDS 1622273..1623436 /gene="aksA" /locus_tag="Dhaf_1522" /inference="protein motif:TFAM:TIGR02660" /note="in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis" /codon_start=1 /transl_table=11 /product="trans-homoaconitate synthase" /protein_id="YP_002458010.1" /db_xref="GI:219667575" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="InterPro:IPR013477" /db_xref="GeneID:7258491" /translation="MEERKLTIVDTTLRDGEQTAGVVFSNQEKLMIARMLDDLGVHQI EAGVPVMGGDEQKAIRDIVKMGLKASIMGWNRAVIADIEKSIECGCDAVAISISTSDI HIEHKLMTTREDVLARMVKAAEFAKRNGLYISVNAEDASRSDLDFLLEFARQAKEAGA DRLRYCDTVGILEPFTTFERITKLKETIDIDVEMHTHNDFGMATANALAGVKAGASHI GVTVNGLGERAGNAALEEIVMALKYLAGVDLKFATERFVEVSEFVARASGRSVPAWKA IVGSNMFAHESGIHADGALKNPLTYEVFKPEEVGLERQIVIGKHSGTAAIKAKFRNEY GKEISEEEANELLARVRAFAVDMKRSLFDKELMYIYEDLHREAENRQPNPKWF" gene 1623452..1624663 /locus_tag="Dhaf_1523" /db_xref="GeneID:7258492" CDS 1623452..1624663 /locus_tag="Dhaf_1523" /EC_number="1.1.1.42" /inference="protein motif:TFAM:TIGR00127" /note="Converts isocitrate to alpha ketoglutarate" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase" /protein_id="YP_002458011.1" /db_xref="GI:219667576" /db_xref="InterPro:IPR001804" /db_xref="InterPro:IPR004790" /db_xref="GeneID:7258492" /translation="MTKIQMNVPLVEMDGDEMTRIIWDYIKEILLYPYIELKTEYYDL GLQKRDETDDQITVDAALATKKYGVAVKCATITPNAQRVEEYNLKQMWKSPNGTIRAL LDGTVFRAPVLVEGIKPLVTTWKKPITIARHAYGDIYKNVEYRVGGPGKAELVFSGEH GEESRQTICNFEGKGILMGMHNLDSSIESFARACFNYALDVKQDVWFATKDTVSKQYD HTFKDIFQEVYDKEYKERFAAAQLEYFYTLIDDAVARVIRSEGGYIWACKNYDGDVMS DMVATAFGSLAMMTSVLVSPEGNFEYEAAHGTVTRHYYQHLKGEETSTNPIATIFAWT GALKKRGELDGLPDLADFAAQLEEASLKTIEAGIMTKDLALISELPNIKTVNTKDFLE EIKKTLDTLRP" gene 1624787..1626064 /locus_tag="Dhaf_1524" /db_xref="GeneID:7258493" CDS 1624787..1626064 /locus_tag="Dhaf_1524" /inference="similar to AA sequence:KEGG:Amet_3891" /note="KEGG: amt:Amet_3891 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458012.1" /db_xref="GI:219667577" /db_xref="GeneID:7258493" /translation="MKKEYQFKYGEGYQSFLLNPQYVIQELHAKAIQPVEDVVKEIGR ILDDPIASAPFNTLFKAGDKVTIVVSDITRLLKLPDYLPTIVNRLNGLGIPDEDMLIL TATGTHRGQTPEEKKKIVGEEVYARIEVVDHDCDHSEMVYVGTTPRGTEVVVNRLVVD RKVILTGGIVHHLMAGFGGGRKSIIPGVASRKTIAQNHLHSLDPNAEQSNPLIGVGAL INNPLHEDMVDGTGLVNPDFLINTIMHTDGRIAKFVAGHWLKAWEEGCAWADENYGVP IDKQADLVIASCGGFPKDISLYQSTKTLFNAALAVKPGGTILLLAECREGAGADEFFG WSEPLKEKTLDPELRKNFTIPGYIFYAAVESAAKAKVILYSEIESELVKPMGMIGANS FAEAIELAGVDQENQDVILMPYGGATIPLYQKR" gene 1626172..1627599 /locus_tag="Dhaf_1525" /db_xref="GeneID:7258494" CDS 1626172..1627599 /locus_tag="Dhaf_1525" /inference="protein motif:PFAM:PF00474" /note="PFAM: Na+/solute symporter; KEGG: ckl:CKL_2043 predicted symporter protein" /codon_start=1 /transl_table=11 /product="Na+/solute symporter" /protein_id="YP_002458013.1" /db_xref="GI:219667578" /db_xref="InterPro:IPR001734" /db_xref="GeneID:7258494" /translation="MFNIPLLIVILYIFALFGISFYASKRAKGTEGFLLAGRQMTTPL IAVLITGLAIGGASTIGVAEQAYNVGLAAGWYNVAWGAGAICMGILAAAKYRSMNITT VPEMFEKFYDVKGRVICVLSQITIQLVITSLQYLAGGAILASLLPSVFTLQSGIITSA IVFIGITFVGGMWSAGISNILNVVLIYLGIAIATIATLINQGGIAQIAVKLPQEVPYF HWVGGLGWIAIASWFAVMMTQTMSLQGTVQISLSAKDAKTARNGFVIGGLLMLPIGFL AALMGIAAKGMYPDMSATLALPQMIMSLPPVLAGITLAALWAADVSTAGSLLLGSATL FSQDIYKRFLRPGSDEKHLMWVTKFSVIALGALTFILALTVSGILKTIMIGLSLTTAF TIVFLFTVFAPGLARRNSAFYTNLVGIAVIVLWQFIPAVRVFPHVIYLEWIACLVTFL LVPIFDRQPIRLGNKEDSLISQVAK" gene 1627887..1628141 /locus_tag="Dhaf_1526" /db_xref="GeneID:7258495" CDS 1627887..1628141 /locus_tag="Dhaf_1526" /inference="similar to AA sequence:KEGG:NT01CX_0447" /note="KEGG: cno:NT01CX_0447 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458014.1" /db_xref="GI:219667579" /db_xref="GeneID:7258495" /translation="MAFIIIGVFHPIVIKGEYYFGKRIWPLFLVAGIVLIGASLFIAN NMLSAIVSVTGFSCLWSIHEIFEQEKRVKKGWFPGNPNRR" misc_binding 1628321..1628469 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 78.31" /bound_moiety="adenosylcobalamin" repeat_region 1628626..1630189 /note="ISDha8" gene 1628760..1630118 /locus_tag="Dhaf_1527" /db_xref="GeneID:7258496" CDS 1628760..1630118 /locus_tag="Dhaf_1527" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase IS1182 family protein" /protein_id="YP_002458015.1" /db_xref="GI:219667580" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7258496" /translation="MFNIRQERLFSLEEILETSPRESYALILGPLDINPLLEAVSKKA IFGAPTQLNYTAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEET PVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIEDQLSCTFTELAQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHP YLNPSYILADAGYDYIPIYQQARCIGARALIDYNKRNEQLPEDNDKYFRPICQKGYSY RYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRI AA" gene 1630267..1631436 /locus_tag="Dhaf_1528" /db_xref="GeneID:7258497" CDS 1630267..1631436 /locus_tag="Dhaf_1528" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_4592 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458016.1" /db_xref="GI:219667581" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258497" /translation="MFQEEGDGLRPDGLRPDGLRPDRKFHKLYHEEFHKGRQHGEFRE LRRSMKFLRPVGVLLNLLLLYLLFQWIGLKAIAVFFALILITREILQLGFFRRLEKRV FKPMEQLKQGFDEIAKGNYQVSIEPEVENEFTQLIYAFNEMAFKLQESERSNQEYEKN RKTLVANISHDLKTPITSIQGYLEVILEGCVGEPEKIKRYLETIYSNTAYMNKLIDDL FLFSKLDLDKVAMNYEVLSIGAYLDDLATELKFEFEERQFKFFYQNRTDRDYAVTIDG KRVYQGIRNIIDNAMKYGPEQDLKVTMELYVQEDDICIDIADNGPGIPEEQLPHIFNR FYRLDTERSKDFTSTGLGLAIAKELIEAQGGTISAASTDRAGSRFTIKLPISKSS" gene 1631512..1632198 /locus_tag="Dhaf_1529" /db_xref="GeneID:7258498" CDS 1631512..1632198 /locus_tag="Dhaf_1529" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_4591 two component transcriptional regulator, winged helix family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458017.1" /db_xref="GI:219667582" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258498" /translation="MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSG TYDILIVDLMLPQLDGFEIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKP FSPAELMARIRSHLKRYERLTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEY ELLLFFASNPNILFSKERIFDLLWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIET VWGTGYRFNP" gene 1632225..1632467 /locus_tag="Dhaf_1530" /db_xref="GeneID:7258499" CDS 1632225..1632467 /locus_tag="Dhaf_1530" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bpy:Bphyt_4337 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458018.1" /db_xref="GI:219667583" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258499" /translation="MSVSINLNRCDGCGLCISQCPAKVLELKEVKQADYNQLNMMGKL KIRVKGNSRAYVSNESACTRCKLCQNNCHERAIKVG" gene 1632818..1633321 /locus_tag="Dhaf_1531" /db_xref="GeneID:7258500" CDS 1632818..1633321 /locus_tag="Dhaf_1531" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_0218 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458019.1" /db_xref="GI:219667584" /db_xref="InterPro:IPR010106" /db_xref="GeneID:7258500" /translation="MSLIHNPHDKFFKETFGDVGTARSFLENYLPQEVRALVDLKTVL PQKDSYIDQELQESFSDLLFQVKIRENEGYFYFLFEHKVRPYADRRKKMSTRLADDSV LSKQREMFMQSVNHGKPPYISRFIRKGNRTGSAACRCSNGARATAPQSLKGHDAQECK FVYEVKS" gene 1633737..1634699 /locus_tag="Dhaf_1532" /db_xref="GeneID:7258501" CDS 1633737..1634699 /locus_tag="Dhaf_1532" /EC_number="2.7.7.49" /inference="protein motif:PRIAM:2.7.7.49" /note="PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: spi:MGAS10750_Spy1709 reverse transcriptase / RNA maturase / endonuclease" /codon_start=1 /transl_table=11 /product="RNA-directed DNA polymerase" /protein_id="YP_002458020.1" /db_xref="GI:219667585" /db_xref="InterPro:IPR000477" /db_xref="GeneID:7258501" /translation="MRSPITVLKSLTEKSKDESYKFQRLYRNLYNPEFYWLAYQNIYA NKGSMTPGMDGTTISGINEERIRQIIASLKDQSYQPHPARRVYIEKKNSQKKRPLGIS TANDKLVQEVVRMILESIFEPTFSDKSHGFRPVRSCQTALLQIQGNFTGVNWFVEGDI EACFDSFDHHVLIELLQRRIDDASFISLMWKFLKAGYMEQWEYNMTYDGVPQGSGISP ILSNIYLSELDTFMSEYKAAFDIRKTHGRKPSSNYCHARYMASKYRKESRAIWGNLTP SEKKSRMKEQRALSVKQRETPAHDVFDDTFKIIQYARYADGVRP" gene 1635272..1637095 /locus_tag="Dhaf_1533" /db_xref="GeneID:7258502" CDS 1635272..1637095 /locus_tag="Dhaf_1533" /EC_number="2.7.7.49" /inference="protein motif:PRIAM:2.7.7.49" /note="PFAM: intron maturase type II; RNA-directed DNA polymerase (Reverse transcriptase); KEGG: spi:MGAS10750_Spy1709 reverse transcriptase / RNA maturase / endonuclease" /codon_start=1 /transl_table=11 /product="RNA-directed DNA polymerase" /protein_id="YP_002458021.1" /db_xref="GI:219667586" /db_xref="InterPro:IPR000442" /db_xref="InterPro:IPR000477" /db_xref="GeneID:7258502" /translation="MRSPQIVLENLQRQSQKQDYRFERLYRNLYNPDFYLLAYQKLYA NNGAMTPGVDRTTLDGTGMERIESLIQSLKNRSYQPQPARRRYIPKKSGKGQRPLGIQ AANDKLVQEVVRMLLESIYEPTFLDSSHGFRPNRSCHTALARMQRSFNGVKWFVEGDI KAYFDTIDHHMLVNILRRRIQDENFISLIWKFLRAGYLEDWQYNATYSGSPQGSGASP LLANLYLHELDLYMEEYKQRFDKGNRRQAGKDYGRAQRTHQYRKVKYDRLWLTLTDEE KKAAQREIRALRKRMLECPANDPMDGTYRRIQYVRYCDDFLVGIIGSKTDAEKVKADI CRFLSDKLKLTLSPEKTLITHGQDKARFLGYDIAVCQDNTTRRTSRGQSRVHSGKVKL YVPKDKWVGKLREYGVLKVASDGNGKEKWTPQPRTDFMGLEPREIVNMYNAQLRGIYN YFRMANNASVLNKFHYVMKYSLYKTLAGKFRTTVSKINAKYSRDGAFIVEYMTKSGIR RVTFYQDGFPRIVAPLPANVDYQPEYVVNYEPKELFYRMKAARCELCGKEHVLVSSHQ VKRLKDLTGSHPWERVMLKMRRKTLIVCNECHRAIHSVDSE" gene 1637196..1638051 /locus_tag="Dhaf_1534" /pseudo /db_xref="GeneID:7258503" gene 1638138..1638628 /locus_tag="Dhaf_1535" /pseudo /db_xref="GeneID:7258504" misc_binding 1638895..1639074 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 114.14" /bound_moiety="adenosylcobalamin" gene 1639227..1639883 /locus_tag="Dhaf_1536" /db_xref="GeneID:7258505" CDS 1639227..1639883 /locus_tag="Dhaf_1536" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458022.1" /db_xref="GI:219667587" /db_xref="GeneID:7258505" /translation="MRYYCLEIDEGEKEPYAYGASVGEWPRKEIHCPLCQREWKKSTM YDWGTDNPIVLSNDNYPDFLWFYINHISGKAKDVLEREKITGYSLEKAHVLSVRDLSD LQLKELRRQGIRIHKIPTEPPVYHKLHVAVSAEFYKKSNVILLDRCPECGYETYSAEN KERVEARDYLYLREESLKGADLFRAKGYGVTVYCSERFVEVYKRHELTGLTFTEIEVL" gene 1640276..1641586 /locus_tag="Dhaf_1537" /db_xref="GeneID:7258506" CDS 1640276..1641586 /locus_tag="Dhaf_1537" /inference="protein motif:PFAM:PF00994" /note="PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; KEGG: sth:STH2905 molybdenum cofactor biosynthesis protein" /codon_start=1 /transl_table=11 /product="molybdopterin binding domain protein" /protein_id="YP_002458023.1" /db_xref="GI:219667588" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR005110" /db_xref="GeneID:7258506" /translation="MANNQHDHISCPSSSCIGCATRCHRQQNDPFSRDEALAILFDQA KFELAKEFVPLNEALGRVTSEPTYAAFSVPSADTAQHDGIMVNWEQAKKLLESGSRVL AEHEFCLRAMGAVIEPPFDTVIPLEQVKHWTDGRVEIKALPAPGQGIKGAGSSIRGGE RLVPANYRLNPAHLSILRFAGVETITVWKKPKAAIIPVGDDLVAPGRRPGPGQVVESD SILLAGILQECGGEAWTEPVAGDGVDLICQAILQVISRCDVLILIGGLGRSGARYGDY TVQAVEKLGRVLVQGMGFNPGGKAMLLAEIQGKCVVGIPAPPHAALTQAEQYLPAIME RFLGCPCYERPEIKARLHEDYQSGIRSGRHAHVGLRWTGEDYEIVPIRMGDTVDCFVN ATGILMEEAEDRLLKKGEPAAVRLLCGEKTLRQRSQTGQDNPTG" gene 1641601..1642380 /locus_tag="Dhaf_1538" /db_xref="GeneID:7258507" CDS 1641601..1642380 /locus_tag="Dhaf_1538" /EC_number="1.18.6.1" /inference="protein motif:PRIAM:1.18.6.1" /note="PFAM: NifH/frxC-family protein; KEGG: aoe:Clos_0309 nitrogenase" /codon_start=1 /transl_table=11 /product="Nitrogenase" /protein_id="YP_002458024.1" /db_xref="GI:219667589" /db_xref="InterPro:IPR000392" /db_xref="GeneID:7258507" /translation="MIRAAIYGKGGIGKSTTTSNLAVALSGMGYKVMQIGCDPKADST RMLTGGRAIPTVLELVRSRRDDLQVSDFVQEGYNGVLCVEAGGPMPGIGCAGRGIITA FDTLAEMKAYEVYQPDIVLYDVLGDVVCGGFAMPLRGEYTDVVFIVTSGEMMSMYAAS NIAAALANFRSRDYARYGGLILNRRNVDKELELVQQLAAETQGELIAVIPRAAEIQKG EEQGKTVMEIFPETEIAQCYRTLARRFLHTVDKSTKPQVEF" gene 1642422..1643663 /locus_tag="Dhaf_1539" /db_xref="GeneID:7258508" CDS 1642422..1643663 /locus_tag="Dhaf_1539" /inference="similar to AA sequence:KEGG:Mlab_1040" /note="KEGG: mla:Mlab_1040 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458025.1" /db_xref="GI:219667590" /db_xref="GeneID:7258508" /translation="MSKRVQNNLLYYIPNRSRSKTILRIPESHSLHICPTACGRRNAI RALQNGEKEFLSFLYIGEEDAVSGQYVENIGDAVEELLEVLEPVPKAFVLYFNCIDDF LGTDEKALLRELKSRFPGLYFTVCHINPVAADEKISQGMRKHNQMYGLLEYTEQKENS LNFIGHYVSLDPESELFTVLKEWGIVTIRELFTCETFADYQKMASSRLNLVLMPMGQV AAQNMAAKLDIPYYDNPVSYDLKEVLQHYQDLAGLLGKSCPDFGGEIRQTLLDIIVTR EMVGDIPIVVDSSASMRPFALAKALLGYGFQVKAVFAPHSPREDAEEGQWLADHHPQV TVINREGVKAVAGYGLDRECLAIGYDCAFLLKARHFVNMFNDESFYGFHGIRKLMGLM GKAAARSADWEHLNEKKDEGK" gene 1643669..1644889 /locus_tag="Dhaf_1540" /db_xref="GeneID:7258509" CDS 1643669..1644889 /locus_tag="Dhaf_1540" /inference="similar to AA sequence:KEGG:Swol_0406" /note="KEGG: swo:Swol_0406 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458026.1" /db_xref="GI:219667591" /db_xref="GeneID:7258509" /translation="MERLAVYLPPFASDYSGVCSALYELNCLIIIDDASCCTRNYVTY DEPRWTESTRSTFGSNLRTIEAVLGDEERLISQTIEAAEKLKPEFIALLGSPVPAIIG RDMKGIAREIEARSGFAALGFATTGFSYYNKGISAAHLRLLQRFAVPGIPTAAGHVNI LGLTPLDFSANDNSRDLIRLLEDNGFRVNVSFWMGTELDQLRRAPAAEVNLVVSQSGW AAAQYLYKNYGIPYVAAAPLGIRHSRMVLEALGQTMADKQNRIIKDAKTGTGAAWLAA GEDGAWPAAGTGALLIIGDQVMANSLRAALRQADCRQDITVASFFDLEPELALPGDLL LKSEKQLIKLLRSGAYTRLMADPLILSIPAAAGLKGHSLPHPAISSLLHWQDVPLFLG EEFEKLILSWSDGN" gene 1644922..1646124 /locus_tag="Dhaf_1541" /db_xref="GeneID:7258510" CDS 1644922..1646124 /locus_tag="Dhaf_1541" /inference="protein motif:TFAM:TIGR00177" /note="TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: aoe:Clos_0219 molybdenum cofactor synthesis domain-containing protein" /codon_start=1 /transl_table=11 /product="molybdenum cofactor synthesis domain protein" /protein_id="YP_002458027.1" /db_xref="GI:219667592" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR005110" /db_xref="InterPro:IPR005111" /db_xref="GeneID:7258510" /translation="MSEDTNLFITRGEALELLSSSWNPEQEREWVSLKDALGRVTAKP LYSQNTMPVYRISQLDGIAVRSSDFMNGIPDTSGWVKGVDYVQADTGDDFPDEFDTVI PVEDTHYDSDGRLSLAKGLTLKAGDCVGAAGTAVRQGDLIADAQVRLTPLHLSMLALS GIYHLEVLRKPRVIYIPTGSELITAGIRPERGQTIESNSLMVTALLEQWGADVTCYPI IKDKPEELAEALDKALQAADLVLINGGSSKGAEDFNTALLRKRADLFRHGVRAIPGRP VGMAIIAGKPVINMPGPTFATFLAMDWCVSGLVHHYYGLPAPQRPKVKVSLTKALEKR PDYEFYFRLMVTGKDGGYEATPLGWDRNLPDSLLKMDAILIVPIGVAGYQAGEEVEVE LMCGPEYL" gene 1646160..1647182 /locus_tag="Dhaf_1542" /db_xref="GeneID:7258511" CDS 1646160..1647182 /locus_tag="Dhaf_1542" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; ABC-3 protein; KEGG: swo:Swol_1695 transport system permease protein" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002458028.1" /db_xref="GI:219667593" /db_xref="InterPro:IPR000522" /db_xref="InterPro:IPR001626" /db_xref="GeneID:7258511" /translation="MKIRNSEYFGVKILLLVALTVALFFGSFLVGRYPIPPQTVMDII LSQFLPIPQYWDSTLETVVMQVRLPRIALGILVGGALSVSGASYQTLFKNPMVSPDLL GVSAGAGFGAALAMINDGSWWQIQTTAFTFGMIAVIAAYIIAYVFGRQTITILILGGV VVSSLFQSLISIIKTLADTENQLPAITFWLMGGLGKGANQDVMLMLPAMVLSLALLFL FRNQINALAAGEDEAATMGVNVPLVKLIVICSSTLMTVCSVSICGIIGWVGMVVPHIA RMLTGANYSKLVATSFFIGGVFLLLIDNIIRGVEGVELPLGVLTALVGTPVFVLLLSR VKKGWS" sig_peptide 1646160..1646255 /locus_tag="Dhaf_1542" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.742) with cleavage site probability 0.483 at residue 32" gene 1647182..1647970 /locus_tag="Dhaf_1543" /db_xref="GeneID:7258512" CDS 1647182..1647970 /locus_tag="Dhaf_1543" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A2262 iron(III) ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458029.1" /db_xref="GI:219667594" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258512" /translation="MLSVKSLSFHYQPERIILKDISFDLDSHEILCLLGPNGTGKTTL LRCILSLNKMKSGRITLNGLELSKISPKRRAEMMAYVPQATTVAFPYEAAEIVQMGRV VNLSLGARPSARDRKLAEEAMEKMGILHMSSYPFNEMSGGEKQMVLIARAIAQQAKIL VMDEPTANLDYYNQVKMLKVIKALAEQGYAILMTSHFPDHAFLACSKAVLMRDGVIMA QGHPDEVVTTENLTRLYSTPVCVAEARLDAMDTAMKVCIPVMNN" gene 1647996..1649078 /locus_tag="Dhaf_1544" /db_xref="GeneID:7258513" CDS 1647996..1649078 /locus_tag="Dhaf_1544" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: aoe:Clos_0215 periplasmic binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002458030.1" /db_xref="GI:219667595" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7258513" /translation="MKLKRKILALLMAALLAVSLAGCGQTSQAPANPPAAPEASTPTE RTVTDMAGRTVTLPAEVKTVGTFGSIGVLNAFVETLSAGERLANEGSPSFVKSPTWEK YQYQFTPHIKNLKPFQGADNELLMENILAAKPDVCLTMSTDLTEQLEKQGLNVVQLSW TKTEDVKECITLLGEVLNQQEVAADYLKYFDDMLAKTADLTKDIKDADKKTVVYGNVS KFSQPHVIAEWWIDKAGGISVTSEAMTKANKESLTYTLEDLLKWNPDVMFVASAAEKK DVLADARLGEITAVKNGAIYIVPRIAHVWGNRTTEQPLTIMWAMNKLYPEIVTDSQLA EDISYFYSHFFKYDFNADQLKEIMGQ" sig_peptide 1647996..1648082 /locus_tag="Dhaf_1544" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.512 at residue 29" gene 1649210..1650223 /locus_tag="Dhaf_1545" /db_xref="GeneID:7258514" CDS 1649210..1650223 /locus_tag="Dhaf_1545" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swo:Swol_1674 hypothetical protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002458031.1" /db_xref="GI:219667596" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258514" /translation="MYPNLTSEQALLILQSARNPDKAYDLFAQAAEVRDKVFGKRLWW SSGSGGIFPCLVKPRCSYCTYYTEKLFPTDVLLTGLELIESLGIQQFHISGGTDLDEG YDEQLLELVQAIKTRSGLKLEINLGPSFRQETVLELKKLGIDSVTSSLECNTPAIFAR AKPGDSLERRRELLHHCEEADMPSRSMMLLGLGETDQERIEHLFYLQQFKKLYQLRLS RFMPFPGTLYKDRSRCSPWDTALITAMARLILPNLEISLAAGNSNDDIPLWYLAGGGS QLLGVSITRKEPPATPDVDVYAIGEGAYVVDKRQQVARVLEGMNLEVTCEMPDYRALQ SQF" gene complement(1650177..1651409) /locus_tag="Dhaf_1546" /db_xref="GeneID:7258515" CDS complement(1650177..1651409) /locus_tag="Dhaf_1546" /EC_number="6.1.1.1" /inference="protein motif:TFAM:TIGR00234" /note="catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_002458032.1" /db_xref="GI:219667597" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002307" /db_xref="InterPro:IPR002942" /db_xref="GeneID:7258515" /translation="MQTIAEQFQIITKGVSMLVNAEELKNKLAESHKNRRPLVIKLGL DPSAPDIHLGHAVVLRKIKQLQDLGHEAVIVIGDFTGKIGDPSGKAKGRTALSDEQVK ENARTYFEQIFKVLDKEKTTVRYNSEWLSKLNFEDVLKLAATTTVARMLERDDFQKRF SGNVPIGIHEFFYPLMQAYDSVALQTDIELGGTDQTFNILMGRTLQKAMGQPQQIAMF MPLLEGLDGVEKMSKSLGNYIGVYEPAPVMFKKVMEVPDPLILKYFELATDEHPDRIE AFRVELAQGKNPRDVKYALAEIITRLYHTEQDVMTAKAYYEAAFSKKAIPAQLPVLPV KARSRLIELVPLLVQSGFTASNGEFRRLVQQGGVQLNQQKISDLDRVLADGDVLKIGK KCFVKIVTEGPGNPASHK" gene complement(1652014..1652160) /locus_tag="Dhaf_1547" /db_xref="GeneID:7258516" CDS complement(1652014..1652160) /locus_tag="Dhaf_1547" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bcz:pE33L466_0274 small acid-soluble spore protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458033.1" /db_xref="GI:219667598" /db_xref="GeneID:7258516" /translation="MAKYNLPVDKNTVATQFNVTLGPDATSRQNGSVGGEMVRRTFES FGKR" gene 1652333..1653232 /locus_tag="Dhaf_1548" /db_xref="GeneID:7258517" CDS 1652333..1653232 /locus_tag="Dhaf_1548" /inference="similar to AA sequence:KEGG:Sfum_2911" /note="KEGG: sfu:Sfum_2911 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458034.1" /db_xref="GI:219667599" /db_xref="GeneID:7258517" /translation="MEKLIHLLEAHGPLTGKEIHEKTALNLFDLWEECNQCADIVTTA IGTKYLRLDKQVEGFARLSPSIIREFYNYTVLSLQEQSEEARIKAEQLHQSIIRISKD KLALAKDIMEKIIAAQPDPQGIQEKTCFIIAGDVAYDMAHLEPRPEFSTGKLVNGSDL DIVVIYQGLSEEMIKELDSAIYEWKFYLLKHPGYKEEIDYVIKDLATVERQLEFVGFE SMVAAKVLEEGQFLCGNQALFAEVKRRLVQGGIPEVLEDLKARASLEREQARKRLLAC RDSINDQEMRQLFYTTDEREEFF" gene complement(1653245..1654060) /locus_tag="Dhaf_1549" /db_xref="GeneID:7258518" CDS complement(1653245..1654060) /locus_tag="Dhaf_1549" /inference="protein motif:TFAM:TIGR00502" /note="TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: swd:Swoo_0943 glucosamine-6-phosphate isomerase" /codon_start=1 /transl_table=11 /product="glucosamine-6-phosphate isomerase" /protein_id="YP_002458035.1" /db_xref="GI:219667600" /db_xref="InterPro:IPR004547" /db_xref="InterPro:IPR006148" /db_xref="GeneID:7258518" /translation="MDIIIKENYEHMSLYAADIIAGYVRSKPDCVLGLATGSTPIGTY RELIRKHKEEGLDFSQVKTFNLDEYLGAGMDLAKPYPLDQSYARFMHEELLKHINIKK ENIHIPDGLSKEPKKFCQWYEDEIKKAGGIDLQLLGLGGDGHWGFNEPGSSLGSRTRV VVLTQQTLDDNYEAFYKKAGIERSQMPHFAITMGIGTILEARNILMIVNGPKKAGMVA QCLEGPVTSQVTASAIQLHSGEITVVLDEGAASQLTNSAHYRHTENIKCAYGL" gene 1654337..1655578 /locus_tag="Dhaf_1550" /db_xref="GeneID:7258519" CDS 1654337..1655578 /locus_tag="Dhaf_1550" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: swo:Swol_2456 hypothetical protein" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_002458036.1" /db_xref="GI:219667601" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7258519" /translation="MQPDASIANNVHGRGSFLRRHRKKLIVVFILLVGVLIASQVLSR QAGLIPVSAAEVVQDDFEQNVFASGKLEVKDLAEFKADTKTTVQEIPVKAGDKVSKGQ IILVMDTSSLSVEASQKDLECKELRVKIINSESNIRLFQQAYDTAQKDYNNTKVLMES GAASLKELEQAGQKVTEAQENLVVEQEANLPLLKAQLKQAEVLYQKAQEKLQKATIHS PYDGTVLNLAVKAGQEVENGTLLAQIGNPAQLLIETGINEVDAALLKVGDQVEITNSA LLKEPLLGSIETIAPTAEVVATSQGEQTQVKIRISVPATEGESPLKPGFNVNLKVILQ QKEQALLVPLEAVIEGEGQKLVYVVGQDGIVSEKEVQTGLSNELFMEIVAGLQVGEKV ILNPDGQIKDGVQVIVNAQSN" gene 1655562..1656296 /locus_tag="Dhaf_1551" /db_xref="GeneID:7258520" CDS 1655562..1656296 /locus_tag="Dhaf_1551" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458037.1" /db_xref="GI:219667602" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258520" /translation="MLKATDLVKVYHTEKIAVTALKGVTFHIAAGSFVAIMGPSGSGK STLMNILGCLDTPTAGQYILDGLDVSHMEEQDLAKVRNLKIGFVFQTFNLLPRISCLR NVELPMIYAGIAEKERKEKAYNALEKVGLLKWAAHRPTEISGGQRQRVAIARALVNNP AIIMADEPTGNLDTRSGEEVMAIFQELHQQGATIVLVTHEPEIARHTQRILKFRDGLL REDEGVQEPVQARDILAGLPAEEEPV" gene 1656293..1657486 /locus_tag="Dhaf_1552" /db_xref="GeneID:7258521" CDS 1656293..1657486 /locus_tag="Dhaf_1552" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: swo:Swol_2458 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458038.1" /db_xref="GI:219667603" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258521" /translation="MNLKECIQVAFEGIRANKMRSALTMLGIIIGVAAVITVVAIGQV GQAAIMSSLEKMGTNLFCVYPRSDEQSSLTEADMMTVQDLEVIRNVATDIQYISPADS WSFSAQYERKSKQVYAYGVWPEYKQIRNIQLEKGRFLSEEDEKGGRRVAVIDSKLAED LFGRGEALKKQITIFGASYTVIGITQRDDSFLMGGPNQRSSLYIPYSALRTMVNIDYV PYVEGSAVSKDKTDSAMNQAKKILNSRHHAEDRYYAYSLQQDVEQIDTIMTILQLVIG SVAAISLLVGGIGVMNIMLVSVTERTREIGIRKALGARYKDIMIQFLIEAVVICSIGG AIGALLGIGGGVLAAGLAKIPPAISPLTIVIAFGFSTTIGLFFGLYPARKAAKMSPVE ALRYE" gene 1657709..1658569 /locus_tag="Dhaf_1553" /db_xref="GeneID:7258522" CDS 1657709..1658569 /locus_tag="Dhaf_1553" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: rxy:Rxyl_0033 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002458039.1" /db_xref="GI:219667604" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7258522" /translation="MAVDINKKMITVQGINIQCFDAGNGVATIVLLHGAGVDSAMMSW AEVIRLLGENYRVIAPDLPGYGGSDSIDGEYTLEFYTETVKGIIEAFQCPPVVLVGLS LGGGISLNMALNYPGLIRLLVPVDAWGLFPKLPYHRLTHWYTRSKLNDNLYQWTGKYP AIVRWSLAYNLFGDKSKVTEALVEEVRDGMLEPEAGKPFISFQRSEITRTGLHTDLYS RLGEIAMPTLLIHGSKDKAVPLKDALAASKLIPNCQLHIMEGCRHWPQKERPEEFARV VGDFIAGQNL" gene 1658647..1659462 /locus_tag="Dhaf_1554" /db_xref="GeneID:7258523" CDS 1658647..1659462 /locus_tag="Dhaf_1554" /inference="protein motif:PFAM:PF01790" /note="PFAM: prolipoprotein diacylglyceryl transferase; KEGG: efa:EF1748 prolipoprotein diacylglyceryl transferase" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="YP_002458040.1" /db_xref="GI:219667605" /db_xref="InterPro:IPR001640" /db_xref="GeneID:7258523" /translation="MTDRFLVQNLFGIEGLNIAWYGAIIAFGIILGVWLASREAERQG LKGDMIFDFLIIVLPLAIIGARAYYVIFEWANYADDPMRIFAIREGGLAIYGGVIGGF IGALIFAKRNGFPLFRLIDMVVPSLILGQAIGRWGNFMNQEAFGNLVTNPNLQFFPYA VLIDRLGEWHQATFFYESMWNLAVFAVLIYFRKRTKFTGQLLATYFIGYGLGRFWIEG LRTDSLYLIPGLRVSQALSLILITVGILMFVFRKRLFKEHLDYEGKYLMDSNG" gene 1659535..1660740 /locus_tag="Dhaf_1555" /db_xref="GeneID:7258524" CDS 1659535..1660740 /locus_tag="Dhaf_1555" /inference="protein motif:PFAM:PF03435" /note="PFAM: Saccharopine dehydrogenase; KEGG: lsp:Bsph_3480 hypothetical protein" /codon_start=1 /transl_table=11 /product="Saccharopine dehydrogenase" /protein_id="YP_002458041.1" /db_xref="GI:219667606" /db_xref="InterPro:IPR005097" /db_xref="GeneID:7258524" /translation="MGKALIIGAGGVANVVAHKCCQVPEVFEEICIASRTLKKCEDIR DKLTGSRTKVRVAQVDADQTEEVIQLIKEFQPELVINVALPYQDLTIMEACLATGVHY VDTANYEPPNVPKFEYKWQWAYREKFAQAGLTALLGSGFDPGVTGVFCAYAQKHYFDE IHTIDIVDANGGDHGYPFATNFNPEINIREITAKGRYYKEGEWIETDPLSVKKVYDLE EIGPKNIYLLYHEELESLAQNIKGIKQIRFWMTFSDNYLNHLKVLENVGMTSIEPIEF EGQQIIPLHFLKAVLPDPASLGPRTKGKTNIGCIIQGVKDGQPRTYYVYNICDHQECY AEVGSQAISYTTGVPAMIGAKLIMEGKWQKPGVYNVEEFDPDPFMADLNKYGLPWRED FAPTLLDEE" gene 1660745..1661875 /locus_tag="Dhaf_1556" /db_xref="GeneID:7258525" CDS 1660745..1661875 /locus_tag="Dhaf_1556" /inference="protein motif:TFAM:TIGR01047" /note="TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cbe:Cbei_4408 carboxynorspermidine decarboxylase" /codon_start=1 /transl_table=11 /product="carboxynorspermidine decarboxylase" /protein_id="YP_002458042.1" /db_xref="GI:219667607" /db_xref="InterPro:IPR000183" /db_xref="InterPro:IPR005730" /db_xref="GeneID:7258525" /translation="MNIKELPTPSYVVDENLLRRNLEILQSVQERTGCKILLALKGFS MHAVFPLVGQYLKGIAASSLFEARLGVAEMGKEVHVYSPAYIEEEFDELLGYCDHMVF NSFDQWRKFKDKVKNHPGHIECGIRVNPEYSEIATDIYNPCYQNSRLGVTLANFRPEE LEGIAGLHFHTLCEQNSDTLERTLKVVEEKFGEHLRKMKWLNLGGGHHITRPDYDIET LVRCILHLQEKYGVEIYLEPGEAIALNTGFLVTKVLDIVDNGMKIALLDASAACHMPD VLEMPYRPAIINGGEPGEHPYTYRLGGNTCLAGDVIGDYSFAEPLKPGDKLIFCDMAH YTMVKNNMFNGVNLPNIMLYNEKEGFKLIRRFGYEDFKNRLS" gene 1662083..1662994 /locus_tag="Dhaf_1557" /db_xref="GeneID:7258526" CDS 1662083..1662994 /locus_tag="Dhaf_1557" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458043.1" /db_xref="GI:219667608" /db_xref="GeneID:7258526" /translation="MKKNIVPIIISILILLQVVTLVRIGGLQDELQNTRNQLMDMTSA QSSQINSIYANIDSMLKRQASIIDSYDYALGTFDRDSLTVPVTFNISPKETKAETLAT LYVSGQSTEMARSGTSFSGTLPVNIFDTIDAKVVIADDGTERTEKLEVWEDLRARVLP AVQARFERESGTIYRKTPAESSGEYRSKGNLSMVVTPVQNNTIEKARFVVDVDGSIVS EKALNSGGLGTEIDEKITLSAGQTLTLSALATDSFGLIHKVILDKFTLDEHAEPVRGD EWMWMGEVIIMDNEGKILYAPQYDKVN" gene 1663219..1663605 /locus_tag="Dhaf_1558" /db_xref="GeneID:7258527" CDS 1663219..1663605 /locus_tag="Dhaf_1558" /inference="protein motif:PFAM:PF04304" /note="PFAM: protein of unknown function DUF454; KEGG: cpr:CPR_0217 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF454" /protein_id="YP_002458044.1" /db_xref="GI:219667609" /db_xref="InterPro:IPR007401" /db_xref="GeneID:7258527" /translation="MIKKYMCIGLGLLCFGLGAVGVLLPLLPTTPFLLAAAFFFARGS EKFNTWFLGTELYKNHLESFVSTRAMTFKTKASILAFASAMLLLAFVFTNSILARVLI AGMFIFKYYYFTFHITTLKKDERANE" sig_peptide 1663219..1663284 /locus_tag="Dhaf_1558" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.477 at residue 22" gene 1663705..1664298 /locus_tag="Dhaf_1559" /db_xref="GeneID:7258528" CDS 1663705..1664298 /locus_tag="Dhaf_1559" /inference="similar to AA sequence:KEGG:Cthe_1434" /note="KEGG: cth:Cthe_1434 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458045.1" /db_xref="GI:219667610" /db_xref="GeneID:7258528" /translation="MQTYYLYIVLTRTTTVLSRLIHLLKKDDYTHAALSLDSDLNHMY SFGRRNPYNPFIGRFRREDIHEGVYGFCENLPGAIVEVEVTKQQYDKVKEVLDHFIAH SDRYKYNYRGLWDSIWDKPLSSEDRFMCSEFVYYVLKESGVMDLQIPRNLVRPQNLLH AEGRIIYQGDLKAVKPRTTIDLYANEVGRRGLKINAL" gene 1664295..1665959 /locus_tag="Dhaf_1560" /db_xref="GeneID:7258529" CDS 1664295..1665959 /locus_tag="Dhaf_1560" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2948 ABC transporter ATPase" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458046.1" /db_xref="GI:219667611" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7258529" /translation="MIVFVLYSYDVCKYKNKDHKGGHKLISVNNVSLRYGGRKLFEDV SLKFTPGNCYGVIGANGAGKSTFLKILSGEVEPNSGDVTIAPGVRLSMLKQDHYQYDQ YTVLDTVIMGNQRLYAIMKEKEVLYGKADFTDEDGIKAAELEHEFGEMNGWEAESEAS TLLQGLGIGTELHEKAMSELTGVEKIKVLLAQALFGNPGILILDEPTNHLDIQSIRWL EEFLIGFEGTVIVVSHDRHFLNKICTHMADVDFGKIKLYVGNYDFWYESSQLALQMTR DLNKKKEEKAKQLKEFIARFSANASKSKQATSRKKMLDKLNIEDIEPSNRKYPYVGFK PEREVGNDILTVEGLTKTIDGVKVLDNVSFILSKGDKVALVGTNEGAYTALLQILAGE MEPDSGSYKWGVTITKAYFPKDNTEYFQDVDLSLVDWLRQFSADKTDTYVRGFLGKML FSGEEALKSLKVLSGGERVRCMLAKMMLSQANVLLLDQPTNHLDLESITALNNGLTDY KSNIIFTSHDHQFIQTIANRIIQITPEEMLDVRLSYDEFLDNLAIG" gene 1666160..1667527 /locus_tag="Dhaf_1561" /db_xref="GeneID:7258530" CDS 1666160..1667527 /locus_tag="Dhaf_1561" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: glo:Glov_2955 response regulator receiver modulated diguanylate cyclase" /codon_start=1 /transl_table=11 /product="response regulator receiver modulated diguanylate cyclase" /protein_id="YP_002458047.1" /db_xref="GI:219667612" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001014" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7258530" /translation="MEDVDMKNFLETIEDMILIINREGRLLYANTAVPKKLGYPHEGL MNMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKKEGTSIPAKARIWQGKWHNE PCLFAIIKDLSKEERASSTPFLEPDEIHTGISGAAWCEKPDFASDISCELKDEEPSKP RVLIVDDQLFNLKLLESALKEDYIVMTADNGIEALELATGKSQPDIILLDIIMPVMDG YEVCIRLREMPETRDIPVIFLSALKNEKNEEYALQLGVVDYITKPFSLPIIKGRLRNH VEQKKYRDRQKENSYIDELTQIANRRKFNETVTIEWNRARRNGNSLSVLMIDVDCFKK YNDFYGHLEGDKCLYKIAQTLKSNVKRSSDLVARWGGEEFACVLTDTDRIGAMLVGER LRRAVVKLNIPSEISDVDRVVTASIGVATALPSVDNSLEELLHKADMALYKAKKTGRN CVCTP" gene 1667637..1668446 /locus_tag="Dhaf_1562" /db_xref="GeneID:7258531" CDS 1667637..1668446 /locus_tag="Dhaf_1562" /inference="protein motif:PFAM:PF02517" /note="PFAM: Abortive infection protein; KEGG: mta:Moth_1913 abortive infection protein" /codon_start=1 /transl_table=11 /product="Abortive infection protein" /protein_id="YP_002458048.1" /db_xref="GI:219667613" /db_xref="InterPro:IPR003675" /db_xref="GeneID:7258531" /translation="MDNKSYRKVPKGNKKDKYKDKDKNKDKIQDKNKKETVNKEDSRI PPRHPVWNVWQGLFLLLIIYGIEFFLGWLRTPKDLDQLEGFFRFLTVGMGEALLYLII ILCFFKLIRRPLRELGLVRPHVRYILLGLMMGVFLLVVVGLIGNFLANKLGTPAPQSF TLVLMGAQYDWQLMLLIILGGMIAPIKEEVFFRGIFYPPFRQGYGRGKGILFTAGLFA LLHFDVLRFIPLLVGGVVLTWLYEKTGSLWPSIIAHGTWNTLMALMVWIQR" gene 1668608..1668805 /locus_tag="Dhaf_1563" /db_xref="GeneID:7258532" CDS 1668608..1668805 /locus_tag="Dhaf_1563" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458049.1" /db_xref="GI:219667614" /db_xref="GeneID:7258532" /translation="MERAKAGFEALVSEFKETVLVDFLGVMAIYRNGEKVEAVVKAEA APEKIEEMIRGYNTKRWAHAE" gene 1668795..1669511 /locus_tag="Dhaf_1564" /db_xref="GeneID:7258533" CDS 1668795..1669511 /locus_tag="Dhaf_1564" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mta:Moth_0073 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002458050.1" /db_xref="GI:219667615" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7258533" /translation="MLNNAYDRLNHMITYSKANLSETVVSYVKNKILTGELKSGDRLV ETDISEELGISRAPIREALRELNMRGILIFLPKKGSQVLNLGYKDIEEILSIRIPLEM QVLTLIFKKSLLQEQELDYLEKLNQEMIRADKETAMDVREKNYIFNTCDLAFHEFFWK RSESLRRVEILENQYFQLLAAMNRDISTLGSVMEKHDEHKRIIEACRTGVLDQVLAAF QAHMAPYLKAIIKLENQTGK" gene 1669716..1670876 /locus_tag="Dhaf_1565" /db_xref="GeneID:7258534" CDS 1669716..1670876 /locus_tag="Dhaf_1565" /inference="protein motif:PFAM:PF01979" /note="PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aoe:Clos_2476 amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_002458051.1" /db_xref="GI:219667616" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7258534" /translation="MLLIKNGTLLTMTGEPIENGQLLVDKGRIIAVGKDLSIPEHCPT LDAEGGFIMPGMIDAHCHAGMWEDGLDFEGADGNEGTDPATPHLRAIDAINPRDRALT EAYEHGVTCICTGPGSANVIGGQFATIKTKGTRIDKMILQETAAMKVAFGENPKKRYS AKQQSPSTRMATAAIWREYLFKTKNYLENKEKGSGFDLKLESLIPVVKGELNVKAHVH RADDIFTAIRIAKEFGLKMTLEHCTEGHLIADELAEEGFSVIAGPFIGPRGKVELKEL TFATPAILHKAGLKIALMTDHPVVPVHYLPVCAALAVKAGLAEETALKAITLNPAEIL GISERVGSLEAGKDADIAVFDRHPLDVQAQTTWVLIDGEVVFKRGYFGDSQR" gene 1670996..1671361 /locus_tag="Dhaf_1566" /db_xref="GeneID:7258535" CDS 1670996..1671361 /locus_tag="Dhaf_1566" /inference="similar to AA sequence:KEGG:CHY_1751" /note="KEGG: chy:CHY_1751 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458052.1" /db_xref="GI:219667617" /db_xref="GeneID:7258535" /translation="MAERNILAYFNTVEQAEVIANRIKDLGITDVQIDRIHKFSEATA DHLMNPLTGQMGSLADLTLGSGGGGAGPLMAADTSASGMSDGGGTAASGRDILLAAIV DESQFEQLRQEIRAQDGLI" gene 1671565..1674615 /locus_tag="Dhaf_1567" /db_xref="GeneID:7258536" CDS 1671565..1674615 /locus_tag="Dhaf_1567" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; glycoside hydrolase family 2 sugar binding; histidine kinase internal region; KEGG: cbe:Cbei_2171 signal transduction histidine kinase, LytS" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_002458053.1" /db_xref="GI:219667618" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR006104" /db_xref="InterPro:IPR010559" /db_xref="GeneID:7258536" /translation="MRKMLMALVAVSFGCFLLLFGLLETTDNKVLKSELSQQGVLDLR DWDAASDQVVPLDGQWEFYWHQLLEPGGEPDSAANVIQVPGFWRNDMATRIDHARGAA TYRLTIKLKPSDTVYGLRISNIRMASAIYVNGNQAGGSGKPALTQDEYQYENKPYNVF FPVQGDTAEILIHVANYENNQGGIPYRLYFGSAQGIHTLNTNTTLLNVSLIVSLLMLG CYQLSVFIIRREEKGPLYFGLSCVVIAWSYASTGDRLLIEYFNLPTEIYYKIQAISLY SSLIPMAMFIKTMCKGLIPRWLTKGIIYGMGLYSGVVLVTPFQWYSPFNLLFSFIQMA ANIIIVGLLLYSFRQGRYGEFNRKSLGLFILALGCYLLGLIDYGLYLSSVVLDYKLGY YAILSFCFLASFIMSYQFSEAYKTIESMAAELQQADKQKDEFLLHTSHEFQTPLHGII NLSQAMLETEGELSENHLQNLAVIRDTSRKLSALVRDILDLDKIKRNELTVHPAEVDV RVTVSLVFDLLKHLITAKKIRLINRVPEDLPFVYADENRLRQIIHNLVGNAMKFTSAG TIAISAQVLENHVKIMVEDTGVGIAPSDWDTVFQLFEQAHSPNEYGGTGLGLFICRKL VQMMDGEIYIDWSEPERGTRIAFTLPLAAKDSCSAPASVRPPEKYPMDEPWGRTELPQ GGTGKFTLLAVDDDSANLQVLARLFANEPYNVLWATNGLEALELLKSRSDIDLVLLDV MMPRMSGYEVCREIRRQFSLFELPVILLTVRHSPGDIAAGFKAGANDFMIKPFDALEV RARTETLLQLKQSVAAALKAEMDFLQSQIKPHFLFNALNAIITLCGTDGLRAEQLITH LSYYLRRCFEPRTDSFLLLQDELRLVEAYVEIEKARFEDRLTVLYEVDPGALLKRILP LTIQPLVENAIRHGVMKREEGGTIRLTIQLAGDRVHVEVWDNGVGIREEQLKNLWLSD NSSSERRGVGLANIQRRLKHFCGEELHVTSREGEWTKVQFCFRG" sig_peptide 1671565..1671630 /locus_tag="Dhaf_1567" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.250 at residue 22" gene 1674708..1675574 /locus_tag="Dhaf_1568" /db_xref="GeneID:7258537" CDS 1674708..1675574 /locus_tag="Dhaf_1568" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; KEGG: bld:BLi00600 hypothetical protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and SARP domain protein" /protein_id="YP_002458054.1" /db_xref="GI:219667619" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7258537" /translation="MIRIAAVDDERHALERFERMVSEVKELELCGLFNTGKQLLAYIK EHPLDVVFLDIEMPGINGLQLSGQILDLNETIDIVFVTAFNQYAVEAFELQAMDYLMK PLSKDRLGKTVKRLLKTKGSTDRPGKPFIQCFGGFEVFLDGKALAWKNSKAKEVLAFL VHKEGVPVSWEKISDAVWPDYNSEKAQTNFHATTYLLRKRLAEAGLARILENGRGNYR IIKDQVHCDLYQLEELIKGERIMGKEEVRLLEQLEQRGYMEGSGYVWAYAKAAELDGV CKRVLKDLEKRK" gene 1676269..1677045 /locus_tag="Dhaf_1569" /db_xref="GeneID:7258538" CDS 1676269..1677045 /locus_tag="Dhaf_1569" /inference="protein motif:PFAM:PF08242" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: rca:Rcas_3605 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="Methyltransferase type 12" /protein_id="YP_002458055.1" /db_xref="GI:219667620" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="InterPro:IPR015985" /db_xref="GeneID:7258538" /translation="MDQVNAYRNSAHLYDLDQRELVTADIPFYLEYAGSFGGGILELG CGTGRIAIPLAEAGHDITALDLSENMLAAFSAKLTNVAAGTKKKLALVQGNMADFSLR KTFDMIIAPFRAFQALTRAEDINGCLACMREHLNDGGIVIINVFRPFGTLDESWCYPE TVQWERWDDATGSKVVKKHWGQRIDVENQIIYPGFAYEVMASNGVVERFADNLALKYY YYEQLTTLLQDAGFRIKEEYGWYDKSPIENGRELIFVCTR" gene 1677033..1678193 /locus_tag="Dhaf_1570" /db_xref="GeneID:7258539" CDS 1677033..1678193 /locus_tag="Dhaf_1570" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hmo:HM1_2920 peptidase M56" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458056.1" /db_xref="GI:219667621" /db_xref="GeneID:7258539" /translation="MHTLDTAQEETGLLFLMVFGGGGETKVKNILNYQKPASWIRVVA LIFCIGVALCFLTNPKNSPTPEAAIARALGLAENEITVFGTYETWEEGWYILGFLADR SEARSDLGAALFRQEGDQYSLESYYRCKDGAISQDKIVVCSFSKTPSKYDVILSNNEN LARIQRTINGVADSSYVGGTIPGMTVLRCPDDQYSSAEFQFYDQSGRQIDDYVASNTV LNRGEYEPKGIVSLALWSSATPGYFLESAVGTTFGIYPERFQVSITDATRAAFVGNVL YEGPQYITADVGDRIEIMSSRGENGPEPLTMDVSSYSPRLCYQVFTADGTDTGYRIFR MGGETWIGHWGLYGTAQNSWWCEYIFRVNPSGAGSPGSAILKFAVSGMDSSR" gene complement(1678327..1679127) /locus_tag="Dhaf_1571" /db_xref="GeneID:7258540" CDS complement(1678327..1679127) /locus_tag="Dhaf_1571" /inference="protein motif:PFAM:PF00797" /note="PFAM: N-acetyltransferase; KEGG: mlo:mlr4870 arylamine N-acetyltransferase" /codon_start=1 /transl_table=11 /product="N-acetyltransferase" /protein_id="YP_002458057.1" /db_xref="GI:219667622" /db_xref="InterPro:IPR001447" /db_xref="InterPro:IPR004081" /db_xref="GeneID:7258540" /translation="MYEELSAPLPDKKRYLERIGFTGELRPNLDTLNRLILAQLHTVP FENLDVYDVGRDILLDTESLFDKIVVQGRGGYCFELNGLFMSLLQDIGFDCYPVMVRV VWMATGYMPISHCAGIVTIEGTRYFCDVGFGGPAPCSALRLDDPGEQQSGANRFVFAQ APDGDFIIYRTVDGGREQLLKFNDRPCQNVDFLAPNEYLSQNKQSGFKQMRMINIARE GGSAAINNNVLRLHQGGQVEETLLDTEDKLREALLNYFGLAVSFPLKL" gene 1679411..1679743 /locus_tag="Dhaf_1572" /db_xref="GeneID:7258541" CDS 1679411..1679743 /locus_tag="Dhaf_1572" /inference="similar to AA sequence:KEGG:BCE_1262" /note="KEGG: bca:BCE_1262 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458058.1" /db_xref="GI:219667623" /db_xref="GeneID:7258541" /translation="MGSNLAGAQTWQIVAVYAAYAFLILGAVCLIFMLAAVFRQGDER RSYILTKTCTHTFLIYTAVVFVMGMYALFFQKYHNFSMESTPVASLGLIAILFTGSLF LNKRKYGN" gene 1679745..1679936 /locus_tag="Dhaf_1573" /db_xref="GeneID:7258542" CDS 1679745..1679936 /locus_tag="Dhaf_1573" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: sha:SH2314 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458059.1" /db_xref="GI:219667624" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258542" /translation="MNNNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSL AFKLAEVLQVTVDELFKSK" gene 1680007..1684146 /locus_tag="Dhaf_1574" /db_xref="GeneID:7258543" CDS 1680007..1684146 /locus_tag="Dhaf_1574" /inference="protein motif:PFAM:PF08494" /note="PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: cpy:Cphy_0708 DEAD/DEAH box helicase domain-containing protein" /codon_start=1 /transl_table=11 /product="DEAD/H associated domain protein" /protein_id="YP_002458060.1" /db_xref="GI:219667625" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR013701" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7258543" /translation="MSEPSLEIFNKLTERWFTNALGAPTAVQEQAWPVIAAGRHTLVS APTGTGKTLTAFLVFIDRLLEQAARGALKQEMQLIYISPLKSLAGDIRENLRRPLEGI LAERSKAGAPAGPELHIGMRTGDTPQKERNRMIKTPPHILITTPESLYLMLTSQSGQK ILRTAQAIVIDELHALIDSKRGAHLMLSVARLDRLCGRPLQRIGLSATIEPLDIAARY LSPDPVTVIAPRMEKQIRIEVTSPLSDQRVALKDTVWKELAKTVYAYCGGAGSAIAFV EGRAYAEKLAYFINQLGGEGFARTHHGSLAKEQRFEVEQALRSGSLRLLCATSSMELG IDVGEIDQVFQIGCPRSISSTMQRLGRAGHNPNRTSVMHMFPREGVEGLYCGLTAEVA RQGGIEYSRPPRLCLDILAQHLVSMACGDGYTVEDVLALLPRAYPFREVREEDVRAIL GMLAGDYEHERDIPVRPRIIYDRLHGQVRGDAYSRMLAVSAGGTIPDRGLYACRTESG VKLGELDEEFVFESRLGDRFLLGTFAWQIAGISKDTVTVTPATTAGARLPFWHGDLKG RRLRTGLAFGEIFRRLTQAAQSGTLLKELKKLGLDEAAAQSALGFLQRQLQSTGSLPD DKTMIIEHFKDESGNHQLMVHSVFGRPVNEPLSLLVREVAARHMETTINAVADDDGFL LFPYDGSPLPQGLLQEVVPATARRIAAALLPATPLYNMNFRYNTARALLMGVKGNQRQ PLWIQRMRSAELLASLVEQEQHPLIRETRRECLEDYWDLDGVEYLLEGIRAGDIQVRE LYLDVPSPMSLTLRRQTEAAMMYDYAPTPQPIHQAIESALKKGEGIEPAPEQLARVSE RTRLPQDADQLHALLMMEGDLTAGELEVPIEWLEALAAEGRVQYIEPGLWIAAEQAQD YEEALSGRDLQAGQRLVRRLLRYRGAQSAEQVGERYLWPVGRALELLALLCAEGKAVE QEGLYYHGELYDRARKATLKSRRQVTTLPAERYAALVTSRMQISAPAAEQLETALKTL RDQPFPAEAWETILLPARVGNYRPELMDACLAGGTLFWRLSPDGGLSYHLTADIDWEA DLSGTLETLTGKEKVIYQALLNYGASFMQRLNGLVEGSPYDTLIQLAARGLVSADSFI PVRQWLDRDKLQKNTARQARQRVNARMRILATGRWEVIRPPKALSVEEQLERNFDRAV ILCRETIQGMGWSTALATLRIWEYTGRVRRGYFIEGLSGIQFIREKDYAGTMLTLTQP RDQILWLNAGDPAQPWGRSLPHQPDRKFHNLPGTVVALRTGVPVAVLERQGRNLRIFA PEHLASALEAFVQDYAGRRVFPAQTRIVVKDYPPEAAAALSAAGFSRELLDYVFYRPY R" gene 1684312..1685199 /locus_tag="Dhaf_1575" /db_xref="GeneID:7258544" CDS 1684312..1685199 /locus_tag="Dhaf_1575" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bsu:BSU38310 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002458061.1" /db_xref="GI:219667626" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258544" /translation="MEIKHLEYFVEVARQKSFSKAAEKCHVTQSTISKLIKDLEGELG TSLFNRTSKYVQLTDTGAIFLDQALEIVTKFENLTHEFQNRIKLERGKIAIGLLPITG TTLFAELLGEFKKKYPQIEISLSERGSKKVIMDILDGTLDVGVVCSVPDSQYFESFAF AEDPLYVIVSVRNPISKLASIDLKSLADEPFVLYSSEFSLHDEIISKCKNEGFAPNII FETSQFELMTQMVAADLGIAFLPGAACREMDPRRFAVIPVTNPQIIHQMFIIWKRGRS MSHAANLWLQFAARFFVKN" gene 1685401..1685775 /locus_tag="Dhaf_1576" /db_xref="GeneID:7258545" CDS 1685401..1685775 /locus_tag="Dhaf_1576" /inference="protein motif:PFAM:PF03788" /note="PFAM: LrgA family protein; KEGG: oih:OB3132 hypothetical protein" /codon_start=1 /transl_table=11 /product="LrgA family protein" /protein_id="YP_002458062.1" /db_xref="GI:219667627" /db_xref="InterPro:IPR005538" /db_xref="GeneID:7258545" /translation="MAQGLRFILQIALLWVIYQLGNWVAAKSHLPIPGNVLGMIILFL LLLAGIVRMEWIEEGADLLLKHLAFFFIPIAVGLMQWIGLFQLSGVQLLVSIVLGTAV CVMVMNSVTALLVRFCSPKGGV" gene 1685776..1686468 /locus_tag="Dhaf_1577" /db_xref="GeneID:7258546" CDS 1685776..1686468 /locus_tag="Dhaf_1577" /inference="protein motif:PFAM:PF04172" /note="PFAM: LrgB family protein; KEGG: gbm:Gbem_2907 LrgB family protein" /codon_start=1 /transl_table=11 /product="LrgB family protein" /protein_id="YP_002458063.1" /db_xref="GI:219667628" /db_xref="InterPro:IPR007300" /db_xref="GeneID:7258546" /translation="MNLLFVLMMMAITVGAYAFSRFLSKRYPSPLVNVVFLSTALIIA VFWISGITVSQYQDTKAILTYLLGPATVALAIPLYRSREVLRKNILPVVGGIVVGTTV NIVTTVLVAEWLGLDKLIVTSLVPKSVTVPIAVSVSGILSGDPTLTSVFVIATGIIGS FMTPVLLNLFKVTNPLVRGLAYGTTAHGQGTASALAEGTLQGSMSGVAMGIAAIYMSV AAPFLVHNLLSL" sig_peptide 1685776..1685832 /locus_tag="Dhaf_1577" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.885 at residue 19" gene 1686974..1687666 /locus_tag="Dhaf_1578" /db_xref="GeneID:7258547" CDS 1686974..1687666 /locus_tag="Dhaf_1578" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbf:CLI_2172 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="GntR domain protein" /protein_id="YP_002458064.1" /db_xref="GI:219667629" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7258547" /translation="MSIQKASRSTLVGQVTAQLEHMIESGQWQIGEKIPAEPELMDRF DVSRNTLREGIQALVHVGLLETRQGIGTTVKANSNFALALAKKVQKSNLYETLEVRLG LEREAAQLAAGKRTAEDLQHIEACLELCKEAAQSHELGRFIEADTAFHKSVVKATHNT MFIEMYEHITDALQRSVDEVLRIRNPINYENEIHTNLFQAIQAGDSQLALDSVNHYLE DAKKSLSHLINE" gene 1687702..1689021 /locus_tag="Dhaf_1579" /db_xref="GeneID:7258548" CDS 1687702..1689021 /locus_tag="Dhaf_1579" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: cbl:CLK_1581 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458065.1" /db_xref="GI:219667630" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258548" /translation="MNQLSTKPTQHSSSPNRTVLILMLGIALLAANLRAPLTSVGPLV SLMRDSLHISNTLAGMMTTLPLFAFALFSPLVPGLARRFGMERVLFGSVVILAAGILL RSWSGSFGLFLGTAILGLSISVGNVLIPSLIKREFPRQVGVMTGVYTVSMNTFAALAS GISIPLAVGLGLGWTGALRIWAVLSLIAMFCWIPQLRRNSQGSSAAGESITREAKAET YRRSEEVKHRNRAQGADAKSINMWKSSLAWQVTLYMGLQSMVFYCMVAWLPDILIQAG MNSGQAGWMLSLMQLALIPMTFVGSVLAGRKASQHSLVTFGSVCVIIGLAGLLLWGGS GLTLLWIIILGIGGGFTFSLAMMLFSLRTENADEAARLSGMAQSIGYLLAAFGPMFFG YLHDLTANWTMPLIILIAVAVLCWLTGFCASGDRYISATVKNRGGRL" sig_peptide 1687702..1687794 /locus_tag="Dhaf_1579" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.799) with cleavage site probability 0.355 at residue 31" gene 1689018..1689434 /locus_tag="Dhaf_1580" /db_xref="GeneID:7258549" CDS 1689018..1689434 /locus_tag="Dhaf_1580" /inference="protein motif:PFAM:PF04463" /note="PFAM: protein of unknown function DUF523; KEGG: cbh:CLC_0896 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF523" /protein_id="YP_002458066.1" /db_xref="GI:219667631" /db_xref="InterPro:IPR007553" /db_xref="GeneID:7258549" /translation="MKILVSSCLLGHNCKYNGGNNLNPKVVNYLKDKEIMEICPEIMA GMGTPRACAEMVAGKIRDENGADVDALYRKGVALALRAIKDEEIDFAILQSRSPTCGV RTIYDGSFTGKLIAGQGLFAQALRDAGYRVMDAGDF" gene 1689575..1689952 /locus_tag="Dhaf_1581" /db_xref="GeneID:7258550" CDS 1689575..1689952 /locus_tag="Dhaf_1581" /inference="protein motif:PFAM:PF01325" /note="PFAM: regulatory protein MarR; iron dependent repressor; KEGG: ckl:CKL_2430 transcriptional regulator" /codon_start=1 /transl_table=11 /product="iron (metal) dependent repressor, DtxR family" /protein_id="YP_002458067.1" /db_xref="GI:219667632" /db_xref="InterPro:IPR000835" /db_xref="InterPro:IPR001367" /db_xref="GeneID:7258550" /translation="MTKLTFTMENYLEAVYELSEKGSGARLSDIAERLSVTKASTNRA MATLSEKGLITNEKYGEIFLTPEGRKLAKLTSNKHRILEKFFTQVLKLNADTAGVDAC AIEHVISNDSIQAMEKFLRNYKE" gene complement(1689940..1691343) /locus_tag="Dhaf_1582" /db_xref="GeneID:7258551" CDS complement(1689940..1691343) /locus_tag="Dhaf_1582" /inference="protein motif:PFAM:PF01554" /note="PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_3806 MATE efflux family protein" /codon_start=1 /transl_table=11 /product="multi antimicrobial extrusion protein MatE" /protein_id="YP_002458068.1" /db_xref="GI:219667633" /db_xref="InterPro:IPR002528" /db_xref="GeneID:7258551" /translation="MDTTLVEEKEKQKHFILSGNLWKVMADLSWPAIVAMVLYGMNSV MDAFFVGRYVGEAALAGVSVAYPLSQISVAFGSLIGVGAGSVLSIALGAKDRKTQEHL LGNVNLLSIIVTAVYMLLGLAFSTQLIAMMGGRGEALILGDQYFRITIYGAFFWVYGL AGNMIIRAEGKMKTAAVMMGFGLAVDVIFKYLFIVVFQWGVEGAAWATNIGMLVYTLV SWLYFSKGWATFHSKLASLRWDQKIGTSVLRLGASSLIMSVMSLVQAIFVFNALSKYG TTWDVAFYGVVYRIFTFLLTPIFGLMRALQPVIGINYGARQYERVISSYKIFAVTALV LTLPFWFLSIAIPGPILGLMMKDAAFSGADLLYFRVYMAILPVLSFIFMAMTLFPSVD KGKPAAMIGIARQLVFYVPVMIFLPKAIGVAGVYYGSLAIDAVIILWTLFMVRKEFSQ LRQKARSDKPESIAYSL" gene 1691702..1693042 /locus_tag="Dhaf_1583" /db_xref="GeneID:7258552" CDS 1691702..1693042 /locus_tag="Dhaf_1583" /inference="protein motif:TFAM:TIGR00479" /note="TIGRFAM: RNA methyltransferase, TrmA family; PFAM: protein of unknown function Met10; (Uracil-5)-methyltransferase; KEGG: gtn:GTNG_0298 RNA methyltransferase-like protein" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, TrmA family" /protein_id="YP_002458069.1" /db_xref="GI:219667634" /db_xref="InterPro:IPR001566" /db_xref="InterPro:IPR002792" /db_xref="InterPro:IPR003402" /db_xref="InterPro:IPR010280" /db_xref="GeneID:7258552" /translation="MSKNSMDTKPMVKKSADTHRPITIECLRLSSDGSGVGYHEGKAT FVSGLLPGETGQIRIVEEKKNWQRGQLLSLCKTSAERIEPPCSVFGRCGGCQLQHLNY AQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARLHRGEGNTLGYYQ EKSKATVPFTDCLLISESMNRWVREAEAILGQQDKNLFPDLNALTFRENSQGEGMLIL DSLKDVRQADVWSEMGGGTHSVWGINSSGEPERIAGQKEFTEDVLGARFKISPLAFLQ VNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAKKVWGIEENPYAVED ARENAKRNRVNNVEFMVGKAEDTFQQIGDYPHIVVLDPPRAGAHRKVLEGLLELKPEQ IIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFPWTVSVESIIVMTYSGQKGK" gene 1693861..1695201 /locus_tag="Dhaf_1584" /db_xref="GeneID:7258553" CDS 1693861..1695201 /locus_tag="Dhaf_1584" /EC_number="3.6.3.14" /inference="protein motif:TFAM:TIGR00933" /note="KEGG: amt:Amet_3310 TrkH family potassium uptake protein; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter" /codon_start=1 /transl_table=11 /product="potassium uptake protein, TrkH family" /protein_id="YP_002458070.1" /db_xref="GI:219667635" /db_xref="InterPro:IPR003445" /db_xref="InterPro:IPR004772" /db_xref="GeneID:7258553" /translation="MMFLGKFRANSIQMIALGFAGIILIGTLLLSLPAASRDGASLPF IDALFTSASATCVTGLVVHDTYTQFSLFGQIVILCLIQIGGLGFMTVATLFLMMARRK IGLAERGVLTESVSAFQIGGIVRLIRRIIICTAIVEGMGAILLAIRFCPQMGVATGVY YAVFHSISAFCNAGFDLMGRFAPYTSLIPYQSDVLVNLTIMTLIVIGGLGFVVWDDIM EHKLRYVRYKLHTKIVLLSTAFLIIGGAILFYAMEQGNVLAAMHPIDKLLASLFQSIT PRTAGFNTVDTAALTEGGTVLSMLLMLIGASPGSTGGGIKTTTIMVILLATISYIRNT DDINIFHRRLENNTIKRAYCSTTIYIMLSILGIFLLITTQGLPVKDAAFETLSALGTV GLSTGITRELDTLSRMVIILLMYSGRVGSLTLLMAVMMGTKSKLRNPEEKIIIG" sig_peptide 1693861..1693971 /locus_tag="Dhaf_1584" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.917 at residue 37" gene 1695213..1695863 /locus_tag="Dhaf_1585" /db_xref="GeneID:7258554" CDS 1695213..1695863 /locus_tag="Dhaf_1585" /inference="protein motif:PFAM:PF02254" /note="PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: amt:Amet_3309 TrkA domain-containing protein" /codon_start=1 /transl_table=11 /product="TrkA-N domain protein" /protein_id="YP_002458071.1" /db_xref="GI:219667636" /db_xref="InterPro:IPR003148" /db_xref="InterPro:IPR006037" /db_xref="GeneID:7258554" /translation="MKTVLIIGIGRFGKHLATRMTELGNEVMIVDKEEEKINDLLPCV TRAHIGDCMDEKLLRSLGVSNFDICFVCIGDNFQASLEITSLLKEFGAKYVVSKADRT IHEKFLLRNGANEVIHPERDVALKAARKYSARNVLDYFELAEDFSIFEIEVPDNWVDK SIKQVNVRSRYNINIIAIKKNGKIIPVTSAEHVFMKNQHLIIAGNTKDCSRILDMK" gene 1695903..1697324 /locus_tag="Dhaf_1586" /db_xref="GeneID:7258555" CDS 1695903..1697324 /locus_tag="Dhaf_1586" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_3308 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458072.1" /db_xref="GI:219667637" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258555" /translation="MTINRKNREISRSVMKVLVVLTLSLLGSLLIARLGAGRESILMM FLLGVLFVTILTNGYIYGIAASVAGVVLFDFFFTEPRYAFLIYSAVDVMLLLFFLVTA VVSGTITSRLQKQISISHQSELTARLLYKVAEDFLHITGKRNIILRGIKYIYDHTGYA SRVILDGDDQEYFSEQYAQSDMEGLTIPIQGVAKQMGSLTLYCGRDELTFQQELVVKT VATQLGAALDREYSYREREEIRVAMERERLRSTLLRSVAHDLRTPLTALTGASSLLTD KFEQLSLEEQKKLAADISEEMIWLANFVENILNMTRIGEGQLFLHKEDEVVDDVVNEA TSHMSRILQNRHLEVSLPNEVISLPMDGKLVVQVLVNLLDNAVKHTPLDSCIDLKVGI LGNDVVFEVCDNGNGIAEDIMNRLFDGFTTPKNNIIDGKRGMGLGLAICKAIVEAHGG AIRAENQPAGGARFVFSLPNGGE" sig_peptide 1695903..1696001 /locus_tag="Dhaf_1586" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.429 at residue 33" gene 1697328..1698023 /locus_tag="Dhaf_1587" /db_xref="GeneID:7258556" CDS 1697328..1698023 /locus_tag="Dhaf_1587" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_3307 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458073.1" /db_xref="GI:219667638" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258556" /translation="MTDELTVLLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLF TSNHPDMVLLDLGLPDKDGLVVIREIRGFSGTPILVVSAREQEKEKIEALDLGADDYI TKPFHMGELLARIRAVKRRLQQQLAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPM EYKLLQLMIANKGKVLTHNYIVKEVWGYSETGDTKTIRVFMANLRRKIEKNIAKPRFI LTEIGVGYRFVDE" gene complement(1698207..1698542) /locus_tag="Dhaf_1588" /pseudo /db_xref="GeneID:7258557" gene 1698865..1699494 /locus_tag="Dhaf_1589" /db_xref="GeneID:7258558" CDS 1698865..1699494 /locus_tag="Dhaf_1589" /inference="protein motif:PFAM:PF08241" /note="PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_1029 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458074.1" /db_xref="GI:219667639" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7258558" /translation="MRNNKKFWDRYSGLYDFEINRFNKAAYEEMYSLMSEVLRADMRV LEVATGTGLMALGIAKFVRQVEATDFSPKMIETAKKKIAPANVRFSLEDATALSFAND SFDAVIISNALHIMPDPEATLASIRRVLKPDGLLIAPTFAHGHLKNSTWNLNARILKL IGFETYSKWTPEEYTGFIEKNGFSVGRRKVLRAAFPLVYLEATKVSQSL" gene 1699679..1700104 /locus_tag="Dhaf_1590" /db_xref="GeneID:7258559" CDS 1699679..1700104 /locus_tag="Dhaf_1590" /inference="protein motif:PFAM:PF06983" /note="PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: esi:Exig_0320 glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="3-demethylubiquinone-9 3-methyltransferase" /protein_id="YP_002458075.1" /db_xref="GI:219667640" /db_xref="InterPro:IPR009725" /db_xref="GeneID:7258559" /translation="MITPYLTFNGNCKDALNFYRAVFNCDEPKILPYGDYMPEGSKTP PELLSTWVMHAEMIVCGTNVWFADEAAPPKNGDNIKLTATVPTGKEATAIFDVLCVGG EVTLPPTETFYSVFHAAVRDKFGVNWNVVAEEGPKQVKG" gene 1700108..1700485 /locus_tag="Dhaf_1591" /db_xref="GeneID:7258560" CDS 1700108..1700485 /locus_tag="Dhaf_1591" /inference="similar to AA sequence:KEGG:plpp0113" /note="KEGG: lpp:plpp0113 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458076.1" /db_xref="GI:219667641" /db_xref="GeneID:7258560" /translation="MNNEELKHKIHSMASSTLTEEIYISPVGLLMKIGVLSAKDYEDW RCGRVPYLEKVCKANLRKLSFIMKELRAYALENQLKPSWTAYNRWGVKGKKIPLRFSK SGDALIEKAYATHYVANTANNVR" gene 1700496..1700669 /locus_tag="Dhaf_1592" /db_xref="GeneID:7258561" CDS 1700496..1700669 /locus_tag="Dhaf_1592" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458077.1" /db_xref="GI:219667642" /db_xref="GeneID:7258561" /translation="MLKPSEVKKAAKMIEADNFRFRSFLKNRADEEELEKAAGYMKLT ADQFKEFFLDSTK" gene 1701087..1701557 /locus_tag="Dhaf_1593" /db_xref="GeneID:7258562" CDS 1701087..1701557 /locus_tag="Dhaf_1593" /inference="protein motif:PFAM:PF06983" /note="PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: llm:llmg_2148 hypothetical protein" /codon_start=1 /transl_table=11 /product="3-demethylubiquinone-9 3-methyltransferase" /protein_id="YP_002458078.1" /db_xref="GI:219667643" /db_xref="InterPro:IPR009725" /db_xref="GeneID:7258562" /translation="MKKIVPSLWFGDNNCEEAINYYVNVFPNSEIQKIVRYPNEALDE HFKGMSGKIITAEFTLNGQKYLALDGGPYFHFNEAISMTIECEDQDEIDYFWDKLSHV KEAEQCGWAKDKFGLSWQIVPYNMRALTGTDAQIQAMMKMQKIIIRELEEAGSL" gene 1701621..1702436 /locus_tag="Dhaf_1594" /db_xref="GeneID:7258563" CDS 1701621..1702436 /locus_tag="Dhaf_1594" /inference="protein motif:PFAM:PF04951" /note="PFAM: peptidase M55 D-aminopeptidase; KEGG: aoe:Clos_1006 peptidase M55 D-aminopeptidase" /codon_start=1 /transl_table=11 /product="peptidase M55 D-aminopeptidase" /protein_id="YP_002458079.1" /db_xref="GI:219667644" /db_xref="InterPro:IPR007035" /db_xref="GeneID:7258563" /translation="MKIYISADIEGISGIVAVNQVLPGERDYQRSRELMTQEVNAAIE GAVEVGATEIVVNDFHGAGTNILIESLNNKAQLITGSSRKGAMMEGLDASFDAVIFIG YHSRMNVSGVLSHSFHGGVVSNTNINDKDVGEFYMNACVAGYFNVPVVLVSGDNILEE EVKDVHATIETVVVKTSYGRYAAKCLTPSVVFEKIKEKSKAALIKARNIAPVKIRGPL EMKITFLNSGQAEWASIMPGAELVGSNIVSYNGKTIMDSYRALTAMIKIANSN" gene 1702591..1703877 /locus_tag="Dhaf_1595" /db_xref="GeneID:7258564" CDS 1702591..1703877 /locus_tag="Dhaf_1595" /inference="protein motif:PFAM:PF00270" /note="PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: amt:Amet_2952 DEAD/DEAH box helicase domain-containing protein" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_002458080.1" /db_xref="GI:219667645" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7258564" /translation="MKQVLLNELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDL LGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYG VNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDE TDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEIEKLADTILKGPVKIAMTPEFS PLDIIEQEVYFVDKANKAALLTYWLKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAV AIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDIQELSHVINYNLPEVPETYIH RIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGKTLPEVKEHPYPLVNTVIVPKAKT SQQAAAARPQKPATAKTAAYSQQGAHRAKPNPRKIL" gene complement(1704226..1705071) /locus_tag="Dhaf_1596" /db_xref="GeneID:7258565" CDS complement(1704226..1705071) /locus_tag="Dhaf_1596" /inference="protein motif:PFAM:PF03629" /note="PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: amt:Amet_3913 protein of unknown function DUF303, acetylesterase putative" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF303 acetylesterase putative" /protein_id="YP_002458081.1" /db_xref="GI:219667646" /db_xref="InterPro:IPR005181" /db_xref="GeneID:7258565" /translation="MIHSFLMIGQSNMAGRGFLNDVPPIYNERIKMLRNGLFQFMEEP INYDRSIAGVGLAASFAAAWCKKNKRDEIGLIPCAEGGSSLDDWSVDDALFANAIAQT KLAQRISTLDGIIWHQGEAESHSGKYRDYYDKFFVIIERLRQVLDVPEIPLIIGGLGD YLGHGIMGGYFNEYSQVNEELKRFAHSHNNCYYVTAEGLTCNPDGIHLNAVSQRIFGL RYYEAYDQKCHILGPVRNENSANEIDNDRPHTKAEKAQMINVLFFGGKISFEEYQQKM SQIGD" gene 1705432..1707834 /locus_tag="Dhaf_1597" /db_xref="GeneID:7258566" CDS 1705432..1707834 /locus_tag="Dhaf_1597" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH2332 anaerobic dimethyl sulfoxide reductase subunit A" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458082.1" /db_xref="GI:219667647" /db_xref="InterPro:IPR001664" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258566" /translation="MKKVSMGLSFKGPKITRRMFLKGVGAVTVTSSLGIAGALSSGSP ALKAADEATVKYVHSCCTVNCTSRCHLKGHVQGGKIVAVTPGLLPGRDDYPNACLRGM SYAQRLQDPKERVLYPMKRVGERGEGKFEQITWDEAYDIIAEKLTETKENYGTQAASF FTMSGNLAKLAWESTTRLGACFGGTTYITEGLMGDHGASMGMRLVFGQERGGHDTRDY LNSKLVIIWGRNLADTHTSELRYIIKARENGAKIIVIDPRQSSTAAVADQWVPIRPQT DPALALGMINYLISHNLHDTAWLKANSCAPLLVRNDNGQYLRLGEQYAVWDENSRTIV PADTPNINPALAGEYTSAEGLKCHPSFVDLVDEAAKYTIKATAEICGLEEAVVEQLAH EYATMKPAGIRMGQGMQRVYHSFSPFRTVATLAAVAGYIGVSGGGASHMGGTSSINPI PGVTVPDFNFKEWTDIGGKPITERKSAHIYDMAEKGEIKFLWIGVSNFVNQSPDANRV INKVLPNIPFIVHVDPFWTWTGKYADLVLPGKTHWEVWDILVRSPWVMLDQPAIPTMG ESKSDCEIASGVAERLGFGHLWNKTDEEWVRTFMTSEHPAFASFNWDKFVGEGIFTRS DGIFDPVYSFKDQKYKTPTGKFEFYTERLKELGEHVPTYKPMLENPRGELGKKFPLVC INYHDRLNVHTQHMLYPALRIVQSEPEIQINPVDAAARGITHGDKVKVFNDRGHCVVK AFVTEGIVPGVTAIASGWSPDYYIEGNLQNLTHLTLNPVEEAISQTNSAFYDVLVEVQ KV" sig_peptide 1705432..1705578 /locus_tag="Dhaf_1597" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.806 at residue 49" gene 1707855..1708418 /locus_tag="Dhaf_1598" /db_xref="GeneID:7258567" CDS 1707855..1708418 /locus_tag="Dhaf_1598" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA1012 molybdenum enzyme of unknown function, medium subunit" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458083.1" /db_xref="GI:219667648" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258567" /translation="MSNKQYGMLIDTTRCVGCQTCVIGCKINHKVPGDAHWSSVEMIG SRIMYQPAGNYPNPVLAFRPRLCNHCADPACVKNCPTGAMHKDDNGLVSVNQDVCIGC KYCVWTCPYDAPEFDTEKKVMSKCTFCMELIAKGEKPYCVESCPGEARIFGVISDPDS EISRLIAAKHAQPFLPKFGTGPSVYYV" gene 1708430..1709242 /locus_tag="Dhaf_1599" /db_xref="GeneID:7258568" CDS 1708430..1709242 /locus_tag="Dhaf_1599" /inference="protein motif:COG:COG3302" /note="KEGG: sth:STH2330 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="DMSO reductase anchor subunit-like protein" /protein_id="YP_002458084.1" /db_xref="GI:219667649" /db_xref="GeneID:7258568" /translation="MAELNLSLVVFTLLMGLCTGTFLSYTLWQASGIPSAEVRKKTAR QAMPLLLVLAGIAMLASATHLGRPFRFLNAFHNLGSMIAQEGLWSLVFGIILLVAAFL VYKDKKIPTALYIIGSVVSCGLLLVCSLVYVRANGIPAWNGGLTVVYYFSSAFLLGAA VIYTLHMQYHEEKAGKEMTVVALSAVAVQIIVSLAFLLQLRLQTMDVVLPSTVGLDMV RWGIGLVAPAVSAYLALKGKLGSKNAARFFLGCVILGEIFSRLIFFMQGVHL" gene 1709442..1710116 /locus_tag="Dhaf_1600" /db_xref="GeneID:7258569" CDS 1709442..1710116 /locus_tag="Dhaf_1600" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; KEGG: sat:SYN_00574 cAMP-dependent transcriptional regulator" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002458085.1" /db_xref="GI:219667650" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7258569" /translation="MAKIMKQFLKGNDLSLSIQEIFKNELIPCTVRHLPKGEILWHDK EPHPYSYFIINGIIKLHVVTKEGREKALFYYTNGSLLGFQNLAKEKRTITTATAILPT SLYACEFSLLYTFVMNNPQYFAAFTSYIFHHMAVEAEEIVNISLYNTAERLAALLVLL AEEFPQNEQGYIEIPFNNEELATMVGACRNSVFNALSVFQKQKLIHKGRGRLVIADLP RLKEYV" gene 1710143..1711327 /locus_tag="Dhaf_1601" /db_xref="GeneID:7258570" CDS 1710143..1711327 /locus_tag="Dhaf_1601" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: nth:Nther_0424 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458086.1" /db_xref="GI:219667651" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258570" /translation="MCSEQPARECRDFLILLISAFFIYTYNNIFMVVTPVLLVRMGGT DMIVGLQSTLFLAAAVILRFFFGPLADVRGRRFVMLLGSASFLLASVMLCYAGTVWQV VLLRLLQAVGLASYFPAASATAATCGGSGQKGQYIGILRMVASLSLMVGPVGALYIIQ NYRYPLFFQGTAWLALLGMLPIFLISLKKAGPPQETNPREMNLRQRLNLWIFLQKCPL IISNTFAAALIYGILISFAVLFLKDETKISNPGYFFTLFSLGGILGNLGFGWLSDRWG RLPINSWSFLLLGGGIILFSIIPQVPLCFYPAGLFSGAGYFGSIAVLMAWMTEKAELN ERTTALSLQQNALDMGIAAGSGMFGMLLAAVGNAAWLYGTLGMVWVGYAFIVSRYSGF RG" gene 1711444..1712052 /locus_tag="Dhaf_1602" /db_xref="GeneID:7258571" CDS 1711444..1712052 /locus_tag="Dhaf_1602" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_0069 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458087.1" /db_xref="GI:219667652" /db_xref="GeneID:7258571" /translation="MKCDIIRDLLPTYIEGLASAASNEEIEKHLAGCEECRTFHSEMA GEIREEVPIAGDKEVDCLKKVRISYIRRAAVAVGSAVVCLLVLISLFAVGFSVSSQDM DMTYEVKDNHLEIHFQLKNGHDLLGSYTPEITYDENHQVIGTGQRYRPTWVFHNPFDD VGSTFTMGSELPGPNSPAGVTHTVTIEFADKTVQFIDGRLVE" gene 1712461..1713096 /locus_tag="Dhaf_1603" /db_xref="GeneID:7258572" CDS 1712461..1713096 /locus_tag="Dhaf_1603" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2093 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002458088.1" /db_xref="GI:219667653" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258572" /translation="MDLKALTQALGNLDGESMEKMLNEFVTSEPGEAEVNSVVGACQQ GMAIVGDLFGKNEYFVGDLIYAGELLNNALGILKPVIGEASTEKIGKMVLGTVEGDLH DIGKNIFRGMMEAAGFEVYDLGIDIPAGVFVEKVKEIKPQIVGMSGLLTLTLGAMKAT VDALTAAGVRDGIKIILGGSPVTEDACRHIGADAFTVNAAEGVKICQEWVK" gene 1713131..1714375 /locus_tag="Dhaf_1604" /db_xref="GeneID:7258573" CDS 1713131..1714375 /locus_tag="Dhaf_1604" /inference="similar to AA sequence:KEGG:Moth_1314" /note="KEGG: mta:Moth_1314 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458089.1" /db_xref="GI:219667654" /db_xref="GeneID:7258573" /translation="MNKSPEQLYEERLKRVNDAIQLKVPDRVPLIPIFQAFPFYHYGV TLEEAMNDYAKAAEAHDKLYADFDPDLAWDNVLLYPAKVMELLDLKWFRWPGHGVRAN SMYQFLEGEYMKANEYEELISDPTNFIMSKWIPRSFGALEAFSNLSSMRDSLWLGWFS SFYPFSLPEVQKSLNTLMQASEELARWFGSIFEYRQKLKEKGFPAAWGAFAFAPFDMV ADTLRGTVPALMDMRKHPEELLRAVEAMVPIAIESGINSAKTMGNPFVWIWLHKGVDD FMSDEQYKTFYWPSLRKLLMGLIDAGLTPMVYGEGSMNTRLEVLRDVPKGKVLYHFEH VDMFRAKEILGDVACISGNVPNSLLYFGTPQEVKDYCKKLIDVCGKDGGFMMDSGALI DEAKPENVKAMFEFTKEYGVYR" gene 1714574..1715212 /locus_tag="Dhaf_1605" /db_xref="GeneID:7258574" CDS 1714574..1715212 /locus_tag="Dhaf_1605" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2097 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002458090.1" /db_xref="GI:219667655" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258574" /translation="MSGMDDKLIKAMAELDEKAVLKLVKEELSQGLEPLSILKQIQTG IEKVGELYEKGEYFIADLIMSGIIFNNVLKIEEMNLYTTESKKCKIGKVLLGTAKSDL HDIGKNVFGSMMKMAGFEVLDLGVDVAPETFVARIKEFRPQIVGISGVLIVALEGMKE TVELITAAGLRDSVKIILGGTIVKNGVDFIGADAYTVDPSEGVKLCLDWFEA" gene 1715255..1715980 /locus_tag="Dhaf_1606" /db_xref="GeneID:7258575" CDS 1715255..1715980 /locus_tag="Dhaf_1606" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: amt:Amet_2098 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002458091.1" /db_xref="GI:219667656" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:7258575" /translation="MKELLYIQLVDQLRKKIQLGVLKPGDMLPSENELSQEYQISRVT VRKSLSLLEQEGYTYSAPGKGYFVREPVTDKYILNFNEMNNAGGSAASSKLLEVNVVP PSTKMMYELQIPDDRYVIVIKRLLLAEGAPIAYDVKYLPYNRGLPLVEREIKYATFPE LAGKKTSLFSIKKDLKICAKNASGGVCPLLNVEEGHPLLVISQKLYTAENKVIGWGEI YYIAEFCELNAMWSFGQRLYDNG" gene complement(1716159..1716500) /locus_tag="Dhaf_1607" /db_xref="GeneID:7258576" CDS complement(1716159..1716500) /locus_tag="Dhaf_1607" /inference="protein motif:PFAM:PF01638" /note="PFAM: helix-turn-helix HxlR type; KEGG: cpy:Cphy_1661 HxlR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, HxlR family" /protein_id="YP_002458092.1" /db_xref="GI:219667657" /db_xref="InterPro:IPR002577" /db_xref="GeneID:7258576" /translation="MPCDKSCPIEHTVNLIGHKWKVLILRNLFNNGTQRFSDLSKGIS KISQKMLTQQLRQLEADGIIYRKVYPEVPPKVEYSLTALGNSLKPILDAMNSWGINHL KQSQLDQHNNE" gene 1716697..1717011 /locus_tag="Dhaf_1608" /db_xref="GeneID:7258577" CDS 1716697..1717011 /locus_tag="Dhaf_1608" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: cpy:Cphy_1662 cupin 2 domain-containing protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002458093.1" /db_xref="GI:219667658" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7258577" /translation="MNKINIGDILDLATEKSARKTIFKEGRLDTGLLLYAPGQTTPDH KHSDIDEVFYVISGEGTITINNAEMPLKEKDIIFSPHGETHGFNNTSSANWVVLQIKI RD" gene 1717031..1717413 /locus_tag="Dhaf_1609" /pseudo /db_xref="GeneID:7258578" gene complement(1717476..1719194) /locus_tag="Dhaf_1610" /db_xref="GeneID:7258579" CDS complement(1717476..1719194) /locus_tag="Dhaf_1610" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3045 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458094.1" /db_xref="GI:219667659" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7258579" /translation="MKALQNLRVGTKIIALVMLMAVFLSVVGYTGYYNNLKSNDIINT LYTDKLRSISLLKEARAANRNIQGISYRLLTAPLTQTEYLELKNEMDALITQFNEIWT NYKQTNPDTYEQDMFPTFESELEQYRTEREEALAIASAGNEEEGFRYFTREVTPHMEK LNSILLEISDYNDRTSKEMMDQANEDFKSSTRVIIIVLAAAVVLAIAVGTFIGRLISV PLNKVVTNVNEIARGNLTVEAVKLDTKDEIGILAQAVNQMAANLKDLIKHVSVSAEQV ASSSEELSASSEQQALATSQVATAIADVAAGTEKQSMAIDDTSMAIEQISAAIQQVAA TSSEVAEQASNTSLAAQDGQKVIDQAIKQMNRIGHATDVTQGAVDKLAQGSRMIGEIT DVISDIASQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSSKAANQIAELINE NQLNINNAVTAMQTGNQDVQQGIEMVSSVGATFEQIAGSINQSVNSIQEVSASVEEMA GGSQQIVNAINQIDTISKQNLSQSQTVSAATEEQSASVEQISSSSQALAKMAQDLQLA VSKFSV" sig_peptide complement(1717476..1717562) /locus_tag="Dhaf_1610" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.902 at residue 29" gene complement(1719273..1719698) /locus_tag="Dhaf_1611" /db_xref="GeneID:7258580" CDS complement(1719273..1719698) /locus_tag="Dhaf_1611" /inference="protein motif:PFAM:PF01584" /note="PFAM: CheW domain protein; KEGG: dvl:Dvul_1259 putative CheW protein" /codon_start=1 /transl_table=11 /product="CheW protein" /protein_id="YP_002458095.1" /db_xref="GI:219667660" /db_xref="InterPro:IPR002545" /db_xref="GeneID:7258580" /translation="MQVVVFKLNDQEFAFHIQSVKEIIKITAITHVPNAQESVQGIIN LRGMVTPIINLAERFGFKEKPTTEHSRIIILNIFESTVGVIVDSVSEVLMFKDEDILA PGDEPLVLEKFIHGIGMLDDRLLILLKPEEILGGISQSA" gene complement(1719727..1720644) /locus_tag="Dhaf_1612" /db_xref="GeneID:7258581" CDS complement(1719727..1720644) /locus_tag="Dhaf_1612" /inference="protein motif:TFAM:TIGR00277" /note="KEGG: aeh:Mlg_2429 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="putative PAS/PAC sensor protein" /protein_id="YP_002458096.1" /db_xref="GI:219667661" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7258581" /translation="MELYEMYYFAFNKSSEPMLFADPNTGRIFDVNQAFLALLGYAKD EVMVKTTFDLGLLPEEDSQPRQPLWVKTKNGSLKSGMVSATDLVHKEKMMRLMVFQEQ SENGNFTLEEMLTQTISLISKISEFRDPYTSGHQKRTQKLACAIASEMKLSGEAIHHV SMAAAIHDVGKIYISSDILNKPGKLTQLEYQMLQTHVEVGYEIIKDFQLPWQIPEIIS QHHERLDGSGYPKGLTASQIFLESKILAVADVVDAMNSHRPYRPALGIEAALEEICNY KGEKYDSEVVEHCVRLFKEKQAMPNRFKI" gene 1720920..1722704 /locus_tag="Dhaf_1613" /db_xref="GeneID:7258582" CDS 1720920..1722704 /locus_tag="Dhaf_1613" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cac:CAC3391 membrane associated signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458097.1" /db_xref="GI:219667662" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258582" /translation="MKFHQQLTLLFAIFSLGLVICGYRVQDVGIAGVFSLPIQVRAVL AVESVLDIAQKNKMLPAVSIAGMGIFLGISRYRFLPWLPLARAAAIDAIQEGMIIVDE QGGVVDHNVAVDRFIYDIIGVKRNVIGKNIESVLSAWPQWQSACKNGHEDEFEIDVSA WGKARFFRVKVYPLQEYNFRKRGTVSVLTDITEDRIRGQKTSDSECSGELVQKELTLL KRQMEMVFSTISDRALLSIVDRNGNYLFYTEAVKTQFVEAAADLTIGSAFRKGLYFYA GGTEMDYCDIPEIKVLSGEKVSQYHFMMKGITGETHLLFNGTPIYDEEGNVTYAVFFT QDITDQILHKRQAQLTQKLTELNMTKDQLIQAITHDIRNPIATLVSLMELLEGKERDP VYHDPDYHNLLTTVSDQVKYTYAMMENVLKWFQKQKEKVSLNPSQINLYLNTQKTLRI YARQAEGKGIEVKNRITANLHVYADRELVEFVLRNLLDNAIKFTAKGGTIAIQAHSSS TNVIVSVTDTGIGMDPARLRTLFEDATPGTRGTEGEKGLGLGLRLCKEFLHSHGGEIW VESELGKGSTFSFSLSTSGKSIFAGGEA" gene 1722701..1723831 /locus_tag="Dhaf_1614" /db_xref="GeneID:7258583" CDS 1722701..1723831 /locus_tag="Dhaf_1614" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; transcriptional activator domain; KEGG: cac:CAC3390 response regulator" /codon_start=1 /transl_table=11 /product="response regulator receiver and SARP domain protein" /protein_id="YP_002458098.1" /db_xref="GI:219667663" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR005158" /db_xref="GeneID:7258583" /translation="MKAILIDDDQPTLFILNKMLAKIPRVEIVGEFLNAGDAYHFLKH NPVELAFVDIKMPGESGLDFAWRSLAEFPDLYVVFLTAYKDYAVEAFEVQAFDYIVKP IQQERLERTVSRVLQRKAAGISSRNTVEQAKVLFVYCLGGLDLRNTNDDFVMISSSKG QELFAYLLVHRERLTSKWRIMEDVFQGMSPQNAETYLNTTVYKLRKVLEQYGKRSAIV VASESYVMEIKDFYIDFIEFENKVRTLPSITEANLQEAIQTFHLFAGELFGDKDYQWS LAEKERLGDIYCSFAKKLGRYLLENQNSALALQVFKKLVAINELDEESHCFLLQVYAA QNDLPSLIRHYDRYVQLLQRELAISPSNRTAQLFLSLKKSLL" gene 1723915..1724790 /locus_tag="Dhaf_1615" /db_xref="GeneID:7258584" CDS 1723915..1724790 /locus_tag="Dhaf_1615" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: lsp:Bsph_3332 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002458099.1" /db_xref="GI:219667664" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7258584" /translation="MSASRFTLLIVVTTFLMGSSFAVVKIGLIYSSPLLLAALRFILA GGIMGIIVGVLKRTHPTTKDQWVKLLIIGAFQTAGVMGCIFLSLRTITASESAILTFT NPLLVVLFSTVFLKMRYRLYQWIGVILGLVGVSITMGAQIEFRIGVFFGILSAVFWAI ATLLTKRWGGLTDIWVLSAYQMLFGGLILWVGSFILETPFFTVNGTALLILLWLSLIS SIVQFALWYYLLQKGEPGKTSAFLFLAPFFGVLTGWLLLGDPLYPSLLAGGLLIIIGI FLVNKDFNHKRVSAN" sig_peptide 1723915..1723983 /locus_tag="Dhaf_1615" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.974 at residue 23" gene complement(1724811..1725512) /locus_tag="Dhaf_1616" /db_xref="GeneID:7258585" CDS complement(1724811..1725512) /locus_tag="Dhaf_1616" /inference="protein motif:SMART:SM00418" /note="SMART: regulatory protein ArsR; KEGG: lsp:Bsph_3331 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, ArsR family" /protein_id="YP_002458100.1" /db_xref="GI:219667665" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7258585" /translation="MVDMSISPNPNIAEIAALFGETSRAAILTSLLDGRLHTASDLAY RAGITPQTASFHLGKLAEGGLVSVEKHGRHRYYQLANGEVASLLESFLVISPQPEVKS LKQSAQMVMLQKARTCYDHLAGKLGVGITDSMLDSGYLKKDGKEFVLTEAGVQFVINF GLDLESIKKKRRSLSHACLDWSERSYHLAGALGNQLMQHFFDLGWITPLPGIRAVKVT DQGKAGFKQYFNISL" gene 1725884..1726695 /locus_tag="Dhaf_1617" /pseudo /db_xref="GeneID:7258586" gene complement(1726826..1728364) /locus_tag="Dhaf_1618" /db_xref="GeneID:7258587" CDS complement(1726826..1728364) /locus_tag="Dhaf_1618" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbe:Cbei_1950 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458101.1" /db_xref="GI:219667666" /db_xref="GeneID:7258587" /translation="MASIKMKQVMEFFAENYDINLNDAEEYFMAIVSVGLSLNKEMRK DVAAIYNQNKLMFFESTKEFSGYNHVLLSSGDLEQEIYAKKTLGILLSAEQSELIKVK ILRLIKKHYKDIYVYAQNNNYDGFRKKLSAIEDTSKNLKVTETLIVLFFYTMKQLNEN IINLQVVENAFNAASLFININPINTDIQNELKRETRLAQVKQIVKDELGTIKNSSDIL YSNHKDLKTMVSCLRNLLIIDKLDLDFIAPKVNQDDLDKVMLAFIKTTGKAEFDETQV VQSFGAGYIMKMLLNEYLRARELYLTYSDEDALYSELKALKEKLDTASLAKDTVEIQA HQLKSEIETHELKLKNALSEQSRFYEAQINELNKEIDRLKINLDAEMKNREELFQLRE FFIDLKNDYSPTDTSLDLSRFIANKKLLIIGGTPSWRKRLEAKFPTILTADGFNDKIE LRSYGEVDFVLFYSSYMSHKTYYKTVDFVRANDIPAGYIGKTNMDLVEFEIAEELNKR LAAH" gene 1729054..1729629 /locus_tag="Dhaf_1619" /db_xref="GeneID:7258588" CDS 1729054..1729629 /locus_tag="Dhaf_1619" /inference="protein motif:PFAM:PF03167" /note="PFAM: Uracil-DNA glycosylase superfamily; KEGG: drm:Dred_3067 phage SPO1 DNA polymerase-related protein" /codon_start=1 /transl_table=11 /product="Uracil-DNA glycosylase superfamily" /protein_id="YP_002458102.1" /db_xref="GI:219667667" /db_xref="InterPro:IPR005122" /db_xref="GeneID:7258588" /translation="MDSCFEPVIWPEDKLPKEAVAYRECEVCTEKARIIWGEGNPKAP VVIILDNPGAREDKDGHEYVCGTRQTLQTALHQADLAPDDIYITYLLKCRPLRRYNKE EARTFSKPFLIQQIKTIQPQLLVCLGDTVVQAMFDDQEAHVKNLRGSWHVILGYPCIV SYHPLAVRRRPNLARQFREDWDMLRQRLLDC" gene complement(1729640..1730569) /locus_tag="Dhaf_1620" /db_xref="GeneID:7258589" CDS complement(1729640..1730569) /locus_tag="Dhaf_1620" /inference="similar to AA sequence:KEGG:OB2742" /note="KEGG: oih:OB2742 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458103.1" /db_xref="GI:219667668" /db_xref="InterPro:IPR002471" /db_xref="GeneID:7258589" /translation="MDEKIIIGEGTPYPLQGILSLPDHCSARVPAVVLVHGSGPADRD ESIGANKPFRDIAEGLSNKGIAVLRYDKRTKVYGKQLLKAGPSAVTVKSETIEDAILA AKLLKNDDRIDPDQVYILGHSLGGMLAPRIDAEGGDFAGMIICAGSPRLFSDILLSQN EDMLGQLPKLLHWIANKQIAKLKAKFTAIAGMSEEEAKQVKVFGKTYAWYFKEMDAHP AADYLARTEKPVLILQGDKDFQVTAEKDFALYQQICIGKPNVSFKLYPGLNHLFMKSV YGRVKDFKKEYKVPQKVSAEVLADIAEWIARYD" gene complement(1730586..1731692) /locus_tag="Dhaf_1621" /db_xref="GeneID:7258590" CDS complement(1730586..1731692) /locus_tag="Dhaf_1621" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: bcz:BCZK3019 DNA-binding protein; transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458104.1" /db_xref="GI:219667669" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258590" /translation="MKEINLASVLVAKRREKGITQDELAAYIGVSKASVSKWETGQSY PDITFLPLLAAYFNISIDELMSYSPQMERSDIAKLYTRLAADFASRPFEDVIAECAAL IKKYYSCFPLLVQLVKLYTNHFMLAGTQERQEALLNETVTLCERIQAESGDVQLAKEA VSYQALCSLALQRPQQVLDLLGEGIRPMLPEGMLIAQAYQVMGNIGKAKETLQTELYQ YVMVAFQGLLNVLQMATDHFEKAEEAFLRASDLAQIFNMKQLNPNNVILLYALGARMY CANNSHAKAIELLGNYVDTCVGGFFPFELHGDAFFDLIDPWLKDCGAAAPRSEQVIKE SMLRDVLMNPAFASLQDDPGYRRLVQKMERFIGR" gene complement(1731907..1734582) /locus_tag="Dhaf_1622" /db_xref="GeneID:7258591" CDS complement(1731907..1734582) /locus_tag="Dhaf_1622" /inference="protein motif:PFAM:PF01326" /note="PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: bld:BLi02241 phosphoenolpyruvate synthase" /codon_start=1 /transl_table=11 /product="pyruvate phosphate dikinase PEP/pyruvate-binding" /protein_id="YP_002458105.1" /db_xref="GI:219667670" /db_xref="InterPro:IPR002192" /db_xref="InterPro:IPR008279" /db_xref="GeneID:7258591" /translation="MMFIKEFGQIDINSIQEVGGKGASLGEMTRAGLPVPPGYCITAG AYRQFVSRAGLAELLAQFAEPSTMKNEDITLLAQEISQRILETPLPEELEQEIVQAFT QIIGHGSLAAVRSSATAEDLPEASFAGQQESYLNIPRSELLNHIKQCWASLWTERAIH YRINNGFDQRQVYLAVVVQQMVDSEVSGVAFSVNPMNAKENEMVIESVWGLGEGIVSG KVTPDHYVINKQNDPLIRYVIADKEKMAVRPLHGSGTLFAEVAEAQRQRSSLSQKDIL ELTELIKRIEEHYQLPQDIEWAKTGNRYYILQARPITTLDKAPVQVDESIGESEFFNF DPELEWTNLGGVKERYNKPSSVLGWSILEPCDTEGGLYAYRSISKKELPSPLFAANIY GYLYLNFTSLKSLQPLKMLEPYAAVPDWQQFAPKRAWFQELTLTIGSIKAGNKLIKSL AKDFYAMLPGYLDKIDKYKKTDVTGLTTPELLDYIKNNLELAKQFFQLQLPSLSVTEA LYNMLTGFMKKWLGDKDLTLSSKLVSGLPDNLTVRTNNKLWELTETIASSPYLRELLA QSTIPEFLSRLADSAEGKAFQAQLTDFLGDYGHLNVNMDIAEDFWWENPGIVLAMVKG SLTADKRINPEEREQQKQQEREETEVLVRSKLNFVQRAIFAKLLKSTQSYMLLRDNRH FYVTMPFSLIKKAVVTLGERLTAQGYLLDPRDIYYLTLAEIEGLLSHQLTWSQGYEKI NRRKSAPRVALDDLPSLFKGWPKLSGDAATARQASSVPSANSGQESALQGVAGSPGQV HGQVKIICSPADFSRFQAGDILVAENTDPAWTPLFSIASAVVTEHGGLLSHGAIVARE YGIPAVLGVRNATKIFRDGQTITVDGKKGAVYPES" gene complement(1734594..1735211) /locus_tag="Dhaf_1623" /db_xref="GeneID:7258592" CDS complement(1734594..1735211) /locus_tag="Dhaf_1623" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: mta:Moth_1848 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458106.1" /db_xref="GI:219667671" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258592" /translation="MAYKTPKHVQEKKDAKKHHILDTALKLFALKGFENTSIQDICQA AEVSVGSMYFYFPSKEDIYEEVYSRINNQSLQHLERAVAGAANLEEIIRKVIETIVLS ALPDRTEAQFFLANRTMSNLKIKRDDSLQKFARWFKAILDEAVENGEFNPQNTELAAV SFIYGTYQSVRYWNVFQLETSPEEMIDTLYTYHSKGLGLENCTPK" gene 1735751..1737325 /locus_tag="Dhaf_1624" /db_xref="GeneID:7258593" CDS 1735751..1737325 /locus_tag="Dhaf_1624" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: lga:LGAS_0904 succinate dehydrogenase/fumarate reductase, flavoprotein subunit" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458107.1" /db_xref="GI:219667672" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7258593" /translation="MSDTKKERENKRFSRRDFIRNTGLLAGSAALGATFLTGCNSEPA SAGNNGTALQSWDHETDVVVIGFGAGGAATAITAADAGAKVLLIEKAAKGEEGGNTKY SGQGIMGTDNADELFKYVKAMSGLFTHTISDEIIRAFADGAKENREWLISLGANADVL DEGMGGSGKPWIWNEYPELPGSDHCICWLVSGKNFDGAFYQLLHDNVEKRADKIEVWY DSPGSHLIQDPETRAILGVQVVKSGKVLNVRANNGVVLACGGFENNEEMLANFTQQPY FYPYGALYNTGDGIKMAQEVKAKLWHMSNCAGWLWGFMPPDAKRCKTVTPQKGIMVGP NARRFMNEAQTNRHGRINFGGRWVNMPVPLPTWYIVDSTQVAANKLVSSFSAGNAEEI AKGWIIKADTVEELAKACELDAKTLQETLDEWNASCTQGADALFGRSGASLLPVATAP YYAMKLGPTMYNTQGGPERNSKAEVLDLDGNPIPHLYSCGECGAMWPDMYNGGGNLGE AAVFGRIAGKNIAALQ" sig_peptide 1735751..1735891 /locus_tag="Dhaf_1624" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.755 at residue 47" gene 1737361..1737486 /locus_tag="Dhaf_1625" /pseudo /db_xref="GeneID:7258594" gene complement(1737495..1738736) /locus_tag="Dhaf_1626" /db_xref="GeneID:7258595" CDS complement(1737495..1738736) /locus_tag="Dhaf_1626" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002458108.1" /db_xref="GI:219667673" /db_xref="GeneID:7258595" /translation="MTHPDGLFYQLIQDLAQGKGLPHLIWRLSQILNRPVLLTNSVHR VLVFHDPHHLNLDLDEFLYVPPVKLDEADFLNRSEHSLHHGQLTLNGQVFPFVYLPLL AGDYCLGYIFVLETYPLADSLKPKSLSAEDKETIFEASMPLLLCLKNSSEVSLRQEQY RDDFIRDILYNNYDSKAAIHEKAKSWGWNLQGSLLALVIDLPDRDFKTAREILPRLFN HSSPISAYINLQLVIILNINGLKKVKLKTALNNFINSFLDRLADHGKDRSSIGIGIGS GVPSITDLYKSYQEAKVAWELGKVFDHKSVCYFEEMGFLKFIFTQPARELEEFSQRVL GPLLEYDQAENTGLLDSLRVFIEYKCQIAECSKALYVHENTLRNRIKKIEQVTGFDLR RVDHMVNVYIALQVLNLGKDD" gene complement(1738723..1739328) /locus_tag="Dhaf_1627" /db_xref="GeneID:7258596" CDS complement(1738723..1739328) /locus_tag="Dhaf_1627" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1381 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458109.1" /db_xref="GI:219667674" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258596" /translation="MKQKGFVFDPNRCLGCRSCQTACSVNHNLPPGITLRKVTAIELA MDGHLLKYYLSSSCNHCLNPECFRLCPNHAYRKRRDGIVVFDEGKCKGCGTCIRSCPF EAPVLLPDTGKVIKCDLCFAKLEEGEEPFCIAACPVEALKLFDPSEHHEHLLLKILPG IPRIQVTRPAARYHPLKIGKQVGLQLPNHTMMKEGGNNDSS" gene complement(1739333..1741408) /locus_tag="Dhaf_1628" /db_xref="GeneID:7258597" CDS complement(1739333..1741408) /locus_tag="Dhaf_1628" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_1382 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458110.1" /db_xref="GI:219667675" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258597" /translation="MAQTYCNVCTADCPASCRLLTDVADSRIIGIKGDPRDPYTRGKI CAKGYALKELVYSPDRVLYPLKQQGKGSGNWQRISWEQAFLEIGNKLVGIAQEYGSLL PVSMNKFLGTTGLLSQSVEGFFSSLGPITALMGNPCVSAGTDAFILNYGALKKPLPED MKNSRLILIWGANPAWTAIHQMRYIFEAQDQGAIVVVIDPIFTSTAARSDIYYRIRPG ADGDLALGLAKILVEENLIDHEFLDNFTFGWPEYRDYLETVDLNQVSSSTGIPLAELY ELARLYGTIKPATIRLGPGIQRGPSGGQNARIIDCLAALTGNIGISGGNVHYTSYEQL LHAGKYGQLRLPYGIRQGLSENNEGNTGHRILGTDWYTHLDTLDPPLKFLWVAGRNPV AQDPDPAQLIQALKTIDTVVVAEQTLSATAQMADYVLPVSSPFEFEDVVISFWHYGAA INQQAIPPLGESKSDFAIMHGLASVLHQLKPGLSSFPLHGDPRTWLTQEFTSLNDFLG ITDYRELAHNPARVNLPAVPWQDRQFPTASGLYEFYSFTAAFHQTPPLPIPVDQPVSS RSYPFRLMVSRSPITLNSQFYTIDLLRRLENLPLLLIHPDTGKQKNLAEGDLAKVYNE MGELELPVSFSLSLPPDIVLTYMGTEDIHNTLINTLLSFESTDLGQIFSGSPGIAYNN CFVNLVKMG" gene 1741716..1744085 /locus_tag="Dhaf_1629" /db_xref="GeneID:7258598" CDS 1741716..1744085 /locus_tag="Dhaf_1629" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: hma:rrnAC1215 dimethylsulfoxide reductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458111.1" /db_xref="GI:219667676" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258598" /translation="MMNISRRNFIKGGVAGTATLGLSGSLLFADRWLRPATAASDSEE RIAYTYHPPGCGGRCAYKCTVRDGKLVKIEPNDWPDHRYSVLCTRGLSELQRVYSPDR LQTPLKRVGERGEGKFVPISWDEAITTVADKFKELHSQYGGKSILKMISANQEYTMPL LSSLLGIPVALETSIDTGIASGVEEVTGDAPFGYAMHEITDWVNAKTIILIACNILET TVADSQFFFDAQEAGAKIIVIDPNYSTTATKADQWIPIRPGSDPALLLGMINHILAND WYNHDFMQKNTSAPFLIREDNQHLLRQNDSADGPAQNPFMVWDALSNSAQPYNATGVQ PELEGEFTVNGVKVKTVMSALKEQMKHYTPAWAAEMTEIPEQIIIDLTRQYAQGGPGY LGWGFGGAEKISNSDIFGHAAAILGSLTGNFGRVGGGVGNALFHKYNWGLVTKLGAWS LPPQFKIPPMEIPTTLMGTQPNSVKAVLNLGNSFQQHFANFHHAEAWLKQLEFVVTVD IFDNASVAYSDIVLPIGSCFESNYEITRFQVNRNHALLSEKVIEPLFESKSDFEIEKL LAARFGLEEYMPKTPEDYIRAQLNSPDPFLKGITVEALKANKFIMRLNCPTEPCIGHL DQKYKTPSGKLEIYNEAMIEFAQALPAYEEPVELSSELKQKYPLQFAQYRSRFHVHSQ FMRVSWIRQFCPEPRLELNPLDAKSRGLANGDLVEVFNDRGKLKARCKFMDSLRPGSV RMEEGWWSKDMPEGDINYLTNDTFNPRGFKRKYGPILPFYDTLVEVKKA" sig_peptide 1741716..1741805 /locus_tag="Dhaf_1629" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.948 at residue 30" gene 1744099..1744719 /locus_tag="Dhaf_1630" /db_xref="GeneID:7258599" CDS 1744099..1744719 /locus_tag="Dhaf_1630" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hsl:OE2225F dimethylsulfoxide reductase subunit B (electron transfer protein)" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458112.1" /db_xref="GI:219667677" /db_xref="InterPro:IPR000813" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258599" /translation="MSKKLGMVIDLKRCTGCTTCANACKMQNNVPMGMLWNRVLTEGG EEYDTAAGVYPHVQRRFLPVACQHCENAACVKVCPVGATYKDESGRVVINYDRCIGCR FCMAACPYNARVFNWEEPVRDPGFNYGDKDVPLRKVGVVEKCSMCKERTDTDLEPMCV KCCPAKARKFGDLNDPDSEVSRLIRERHGEQLLAEKGTKPQVYYLD" gene 1744761..1745942 /locus_tag="Dhaf_1631" /db_xref="GeneID:7258600" CDS 1744761..1745942 /locus_tag="Dhaf_1631" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: hsl:OE2227F dimethylsulfoxide reductase subunit C (membrane anchor subunit)" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002458113.1" /db_xref="GI:219667678" /db_xref="InterPro:IPR002016" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258600" /translation="MGRVVLGLLTLMGIGAWAFQLVNGLGVTGMNNVVTWGSYIAMFM LFVGLSAGGLIVSSSATVFNIPSFKVVAKPAVILSTVCIMIAGIFIIVDIGSPWRICN LILHPQFRSPLMWDVVVITLYLALNLVYLYFMSRSEPDERKLKIISRIALPTAVLVHS VTAWIFGLQIARAGWHSALMAPLFVASALDSGLALLIIALLALNRLKLFAVEKKLIGT LAGLLVTCVAVDAFFVFSEVLTMLYPGEESTMAVLREMTGGFAAPFFWGEIILGFILP FMILVFKKNRENTNYVIFASAIVILGVFCKRFWLLFSSFIHPNVQGAPGVTYGKFTEN IGDMWSLHGSYAPTWVELAIIIGMLSMGALLFSYLSSRFLLGRADFIPTVKQGQAAEN K" sig_peptide 1744761..1744817 /locus_tag="Dhaf_1631" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.938) with cleavage site probability 0.900 at residue 19" gene 1745984..1746673 /locus_tag="Dhaf_1632" /db_xref="GeneID:7258601" CDS 1745984..1746673 /locus_tag="Dhaf_1632" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: sth:STH710 hypothetical protein" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002458114.1" /db_xref="GI:219667679" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7258601" /translation="MMYSWTEVWKLRTELYKFLGNCLLEPLAASTANTLDGEIRENFP LEPANRQMESGLEQLRKCTADLKTIPPNEARQEVMVEYTILFLGPGRPKAPPWESVYR TEGQLLFSRATYEVRKILADNGLEMVEKNHQPEDHIGIELLALALMSENVQDVQERKE QKTRIGRQASFIDEHLLSWIPGLAQDAKQHGSLGYYGGLIELIWGILLWDRELLQEFL TQDEDLADILV" gene 1746874..1749078 /locus_tag="Dhaf_1633" /db_xref="GeneID:7258602" CDS 1746874..1749078 /locus_tag="Dhaf_1633" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH518 putative molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458115.1" /db_xref="GI:219667680" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258602" /translation="MTDAKGSKGFSRRSFLKGSTALGLSMGLFGLTACTDKNSGSKSV IGVQTGEKTFTTHTCPRNCYDTCSLIGEKVDGRIVRIVGDPKNPITAGTPCVKGQTHI NVLYHPDRILHPLKRVGKKGEGKWEKITWDEAYATIVQKLKEAIDQYGSESIMPYNFS GTIGFVHQHGVPWRFFNKIGATNITRTVCNTGGKAALPYTYGDFSSIDPETFAKTKCY VTWGTNESYTNVHSVKFIQQARDNGAKLIVVNPHRHPLASQADLFIQLKPGTDAAFAL GVQHIIINENLYDKDFVENYTMGFEELKKQVQNYPPSKVAQLCEVTEEEIREFVKMYT QAKPSIIRMGFGFERRTHGGGMVRAISFLPALMGVVGVEGGGFSYVNYNHYPFDNSYT KRPDLAPRKMRTINMNELGKAIAGELPTTKENPVKVLICFGGNPIPSAPNVNLIKKGL AREDLFTVVHEVFMTDTADYADIILPAAHFIEFEDVIADYLGWYVRYSEQGLEPMGES KSNVQLFNELAKQMGFTDECFNETSTDIIKKGILNKPIFKDITYENLRRNHWIKVDFG NVFSDHKFNTPSGKIEFYSENITKAGLHPVAEYLPEEESQDGSPDLFAKYTINLLTPA SPQLLSSQWHNVPYIQENLGEPFVTINAKDAEDRGIKDGDYCLIQNDRGQVKLKAKVS NSAVKAGVAVSFKSYWNKYTDGNTINSLAPDAIGDLDGISTYNTNLVQITKA" sig_peptide 1746874..1746975 /locus_tag="Dhaf_1633" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.858) with cleavage site probability 0.539 at residue 34" gene 1749103..1749639 /locus_tag="Dhaf_1634" /db_xref="GeneID:7258603" CDS 1749103..1749639 /locus_tag="Dhaf_1634" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cco:CCC13826_2316 ubiquinol cytochrome c oxidoreductase, cytochrome b subunit" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458116.1" /db_xref="GI:219667681" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258603" /translation="MAGQKAFLYNQNYCVGCHSCETACMVKNQVDVGVSWRTLDSFEV EINGRMVERYLSHSCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACP YQAPKMNPHTKKVEKCTGCYDLIDAGEQPMCVRGCPVQVLKIEDIDKLDAEGAVKEAI GFQAFATNPSMRFVKMKQ" gene 1749678..1750373 /locus_tag="Dhaf_1635" /db_xref="GeneID:7258604" CDS 1749678..1750373 /locus_tag="Dhaf_1635" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002458117.1" /db_xref="GI:219667682" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7258604" /translation="MSSLGNNEMQEILAYRCVVFDLLRSLFMWECPEELFADMISWSE LERGEAMAPDCAEARLRKGLSPLSAEELQKIYHEATIEFTRLFVGPYHLEAPPYESVY RNANRLMMQDVTMNVKRFYRENGYERSEVYKEPDDQIGVELEFMYALSEDALQAFREG NFESLKRILSAQEQFMDLHLLKWLPQFCQDILKSSQNEFWRSIAVFTENYIEEDKEQI QRIQQELNLYCQS" gene 1750400..1751278 /locus_tag="Dhaf_1636" /db_xref="GeneID:7258605" CDS 1750400..1751278 /locus_tag="Dhaf_1636" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: cco:CCC13826_2318 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002458118.1" /db_xref="GI:219667683" /db_xref="InterPro:IPR005614" /db_xref="InterPro:IPR006162" /db_xref="GeneID:7258605" /translation="MYHWGWKIIIYLFLGGLGAGAYLTSFAAQKGWLGENSKLGRAGY FLSGPCIVIGSLLLFLDLGIAFSDPLGVLRMFANITSVMTWGIYILSLFILVGFLSAY YTGKNREVPAMLSLLGAILALGTGAYTGVLLAVVTSVPFWNTLLLPFLFVVSALSTGL AATALCAHFLEKKGEQGGDRSSEAKTNKVHLVLLGLESILIMMLLALALTGAKGAGAA ASAHMLTSGSLALPFWLLVVAIGLVFPLVYYIVSAKERQRKLASFFNGLSTDFAVLIG GLTLRATIVLCAVRVF" sig_peptide 1750400..1750483 /locus_tag="Dhaf_1636" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.958) with cleavage site probability 0.849 at residue 28" gene 1751295..1752152 /locus_tag="Dhaf_1637" /db_xref="GeneID:7258606" CDS 1751295..1752152 /locus_tag="Dhaf_1637" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: chy:CHY_2572 putative molybdopterin oxidoreductase, membrane subunit" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002458119.1" /db_xref="GI:219667684" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258606" /translation="MGNWGWLIIGFLFFGGLGSGAYLTSFAAEKGLFGKESNLVRAGY FISGPCLAVGLFLFSLNLGVSITGILTMIGNPTSVMTWGVYLLIMFMVLAFWSAYHKR ENKQVPAMISGAGALLAVVTAIYTGGQLSVLFAQPFWNTILVPGLFVVSALIMGLASS SLLARIIEKPVQQGGAAVTRINISLLLVEWVLLAALLLLSFSGAKGPVAADSAQIVVT GRLAAYFWILLIAVGLVLPLFNNVYPKKKQNEKSGKIFGLLSEVATLIGGATLRAVIV LSALPIWSI" sig_peptide 1751295..1751378 /locus_tag="Dhaf_1637" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.951) with cleavage site probability 0.933 at residue 28" gene 1752276..1753397 /locus_tag="Dhaf_1638" /db_xref="GeneID:7258607" CDS 1752276..1753397 /locus_tag="Dhaf_1638" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: det:DET1598 transcriptional regulator, putative" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458120.1" /db_xref="GI:219667685" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7258607" /translation="MLLQAEEVLPEAQSFLKIASAPLTLKGISQGPHGEEEVKGYVVI AKGSSYGGPMVIATGIDPHGVIVGTAIIEHKDTPSYIRVIKKYDFLKQFEARKITDPL SIKQDINAISGATYSSRGIAEAISIGSHEVARNQLGLDVEDEEAAWVFGVREGSVMAL VILMLVGIALKSDRIRWLTMAGSLVLIGFQYNTPISLSNLASLLMGYLPSIQQNLVWY IFLMVIPILTFLIGKNLYCFWLCPFGALQELLAKVFVGKEVICCSRGVEEKATLVRYA LVYIALLGAVIYQSPGVAGYEPFATLFGMQGNITEWLVLVVVLFSSLLMRRFWCRFFC PGMIVNRIILRLRHHLIDFKRKLGAKSNQGCSAQNSVDQ" gene 1753407..1753505 /locus_tag="Dhaf_1639" /db_xref="GeneID:7258608" CDS 1753407..1753505 /locus_tag="Dhaf_1639" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458121.1" /db_xref="GI:219667686" /db_xref="GeneID:7258608" /translation="MNSSENKQDKLFLLLIGSTVLLISINFLSRFI" gene 1753596..1753799 /locus_tag="Dhaf_1640" /db_xref="GeneID:7258609" CDS 1753596..1753799 /locus_tag="Dhaf_1640" /inference="protein motif:TFAM:TIGR00013" /note="TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate tautomerase family enzyme" /protein_id="YP_002458122.1" /db_xref="GI:219667687" /db_xref="InterPro:IPR004370" /db_xref="GeneID:7258609" /translation="MPYVNIRITNENVTPEKKALLIKGATQLLVDVLGKNPNTTVVVI DEVNTDNWGIGGETITARRKDGR" gene 1753859..1754680 /locus_tag="Dhaf_1641" /db_xref="GeneID:7258610" CDS 1753859..1754680 /locus_tag="Dhaf_1641" /inference="protein motif:PFAM:PF01261" /note="PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; KEGG: cpf:CPF_1335 AP endonuclease" /codon_start=1 /transl_table=11 /product="Xylose isomerase domain protein TIM barrel" /protein_id="YP_002458123.1" /db_xref="GI:219667688" /db_xref="InterPro:IPR001719" /db_xref="InterPro:IPR012307" /db_xref="GeneID:7258610" /translation="MEKLLFGISGLPLGDGTKRFNYATGIHYLKSIGLDAMELLFVHS VNVTDNNKGAILEAKQKEGFYLSAHASHYINLNSNDIAKQNQSITRIIDAAKGLAKVG GRSLVFHPGFYMSDAKEAAYATIKSNLMRLSSCGIDYRLETTGKGSQFGTLEELVALC QEVPLCKLCLDFAHIHARSNGGLKNYDDFAGVLKYVLDHLGRTALEDLHIHMGGIRYT VKGERSHAPLLESDFNYQECLRAIKDYDVRGCIIAEGPLLERDALLLKETYEKLQ" gene 1754928..1755380 /locus_tag="Dhaf_1642" /db_xref="GeneID:7258611" CDS 1754928..1755380 /locus_tag="Dhaf_1642" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: bvu:BVU_0014 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458124.1" /db_xref="GI:219667689" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7258611" /translation="MLNTMISVDKYTRGSFDYKANKSALLITRQLARNFKDQDIVIST EQWKILLYLYREDGQTQCSLSEATGKDEPSISRIINTMEKNNLVLRTPHPNDRRTNLI HLTESGRNMKEMLMFLGQKTNEEVTRGITREEIETCINVLDKIIGNLS" gene 1755763..1757046 /locus_tag="Dhaf_1643" /db_xref="GeneID:7258612" CDS 1755763..1757046 /locus_tag="Dhaf_1643" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458125.1" /db_xref="GI:219667690" /db_xref="GeneID:7258612" /translation="MGMTAVKKWNSIKNKKSKVWCGCASLLIVMLLSACTNPALSGDQ TDNTPPPSEPPGVSAPAQDTPVSNGTEHEATQPTAPAVQKYYNYFVDHHTLVDNRVFT INENTLQDDVIYFAFMNTEPAEGTSANIRTQKQVDDVLMKYFGIKPKRYSTGISSMTA SGDVQMGSVIEDVIRVHRLLLKQLTDNGNGSYSAVFKLYQIQTDRVLPDLDRRILEGD PGMEVYHTQDVKATFTEIPEGESYYLKFSEFTLIPREGPFASPPQETDYLKKVSRDEL KSFHGLAIGMTLDEAKKLLKLPEGAYEYREDSYADYTLVNADGWSYTFRTLPKEKSDD KNQYLMAINIRDYLDVIFRDIKLGDAYEDVIKKFPSGQEEGQLPGSPDSYFTRDYRFA STLHNVDIFTGDVHIAMLFGRYDTLAWADIYSTDY" sig_peptide 1755763..1755888 /locus_tag="Dhaf_1643" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.973 at residue 42" gene 1757124..1757588 /locus_tag="Dhaf_1644" /db_xref="GeneID:7258613" CDS 1757124..1757588 /locus_tag="Dhaf_1644" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: cac:CAC1388 mannose-6-phosphate isomerase" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002458126.1" /db_xref="GI:219667691" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7258613" /translation="MKRILNIDNMPREHIDDPDFQSKMQTLLIGNALGCEKIYVNIDY VKPGGKSVKYHSHSKQEEFFLIMQGSGLLRMNGEEVSIKTGDVISKPAGQEIAHQFIN NGSEILQILDAGTREKDDIATYPDENVVFIRNKGLVFDIKDCMKGWTSDPNS" gene complement(1757702..1758217) /locus_tag="Dhaf_1645" /db_xref="GeneID:7258614" CDS complement(1757702..1758217) /locus_tag="Dhaf_1645" /inference="similar to AA sequence:KEGG:CHY_2272" /note="KEGG: chy:CHY_2272 cotJC protein" /codon_start=1 /transl_table=11 /product="cotJC protein" /protein_id="YP_002458127.1" /db_xref="GI:219667692" /db_xref="GeneID:7258614" /translation="MNDNNINTCRYRVDVPYPPVRVVGPNPVYACEMLGNMGDAVSEM SDVTRYFYISVVTKPQYSWISACFRDISIVEMHHLNIFAELALLLGADPRLWSCRDCM QWWSPSYIGYPHGVRPLIAESIQAEEAAIRKYSHQADTICDMNIVAILRRIIQDEMYH LQIFREMYQQV" gene complement(1758398..1760452) /locus_tag="Dhaf_1646" /db_xref="GeneID:7258615" CDS complement(1758398..1760452) /locus_tag="Dhaf_1646" /EC_number="1.11.1.6" /inference="protein motif:PRIAM:1.11.1.6" /note="PFAM: Catalase domain protein; KEGG: amt:Amet_0511 catalase" /codon_start=1 /transl_table=11 /product="Catalase" /protein_id="YP_002458128.1" /db_xref="GI:219667693" /db_xref="InterPro:IPR002226" /db_xref="InterPro:IPR010582" /db_xref="InterPro:IPR011614" /db_xref="GeneID:7258615" /translation="MENQQTNQKSLDLDAARVSHNKGYLTTNQGVGVSNTDDSLKAGK RGPTLMEDFIFREKVTHFDHERIPERVVHARGSGAHGYFQVYENLSHLTKAHFLSDPN LITPVFVRFSTVAGFRGSSDTVRDVRGFAVKFYTQEGNYDIVGNNMPVFFIQDAIKFP DLIHSLKPEPNNEMPQAASAHDTFWDFVVNTPETMHNVMWLMSPRAVPKSFRMMEGFG INTFRLVNAKGEFKFVKFHWKPVLGVHSLVWDEAQKVAGKDPDFNRRDLWETIEHGQA VEFELGIQVLKPEDEFRFDFDILDPTKLWPEELIPVQKIGKMTLNQNPDNFFAETEQV AFCPANVVPGIDFSNDPLLQGRLFSYLDTQLSRLGGPNFHQLPINRPLPKVNNNQRDG MHRMTIDEGQTSYYPNSLNKGEPHAARAGESHFEHYQEKVDGHVIRERSESFRDHYTQ PAMFWNSMSDWERQHIIDAFRFELGKCKHKHTHQKLVDMLGNVDPELAQKVAEGLGAT PPANGANPTTASSPALSMANTAKSPKTRKVAVLLESGFDKAQFDALTATLIAAGACFD VVSCKLGPVTAGDNGRVEGNQTYATTASVFYDAVYIPGGSHTEALKGSADVKGFLLDT FNHYKTIGLSGEASALLGLLPSGQKPAPGIVCESAGNMEIYANNFLAALTTGRHFERN VH" gene complement(1760563..1761834) /locus_tag="Dhaf_1647" /db_xref="GeneID:7258616" CDS complement(1760563..1761834) /locus_tag="Dhaf_1647" /EC_number="3.4.16.4" /inference="protein motif:PRIAM:3.4.16.4" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: pth:PTH_1876 D-alanyl-D-alanine carboxypeptidase" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_002458129.1" /db_xref="GI:219667694" /db_xref="InterPro:IPR001967" /db_xref="GeneID:7258616" /translation="MRLIAVLFTALAMLLNFAVPVFGSPDKVPVPELSSEGAILIDIT TGQTLFAKNPDHPFEPASTTKIMSALIALEKGNLNDLVTAGPSVLDQELTQGTRIYLE PGEQVTLENLLYALLLNSANDAAVAIAEHIGGDVQGFTDLMNAKAKEIGALNTSFKNP SGLSEDGHLTTARDLAMIARFAYQNPVLRDYVKTKTKIIPRNRENIPTEMYNINEFIW TEPTVTGMKTGYTTSAGNTYVATAERDGRALLGVVLKSPSKTSIYTDMRNLFEYGFTN FENVVYKPKGTALSSLMVSDTPVNLILTDEIIHTREIGSTAPPDISLHVLPIASELKE IRKDQVLTSVQTVEEDRVLNSFALMADSSVIPPIPPQPPSKKSFNWAAPIISILLFFL YMVYRRVSYLRRHRSIERKMTAGRYRDRDLF" sig_peptide complement(1760563..1760634) /locus_tag="Dhaf_1647" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.990 at residue 24" gene 1762108..1762650 /locus_tag="Dhaf_1648" /db_xref="GeneID:7258617" CDS 1762108..1762650 /locus_tag="Dhaf_1648" /inference="similar to AA sequence:KEGG:LBJ_1977" /note="KEGG: lbj:LBJ_1977 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458130.1" /db_xref="GI:219667695" /db_xref="GeneID:7258617" /translation="MTNSELIGLLKKRFEENMNRHKGLEWAEVQARLEESGEKLWSLS EMERTGGEPDVVAQDEVTGEYIFYDCSPETPSGRRNICYDGKGQEERNKKGIFPEGNA VEMAAAMGIELLAEEQYKELQRLGNFDLKTSSWLKTPSDIRKLGGAIFADRRYDHVFV YHNSAPSFYSSRAFRGCLRV" gene 1762716..1763318 /locus_tag="Dhaf_1649" /db_xref="GeneID:7258618" CDS 1762716..1763318 /locus_tag="Dhaf_1649" /inference="protein motif:PFAM:PF08242" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bld:BLi02796 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 12" /protein_id="YP_002458131.1" /db_xref="GI:219667696" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7258618" /translation="MGNTDKFEMIADRYDTPERVEIAKESAAAIREYLVEAKSKSAID FGCGTGLVGMNLLNEFDSMLFLDTSQGMIEQIKQKIAGSNLQKATTLCFDFEKDSLAG LHADYIFMAQVLLHIPDVGLVLSRLYEVLKEGGHLLIVDFDKNEKVVSDQVHNGFEQT ELVELMTEIGYRKIQTRTFYTGAKFMGQDASLFILDSQKL" gene 1763375..1764028 /locus_tag="Dhaf_1650" /db_xref="GeneID:7258619" CDS 1763375..1764028 /locus_tag="Dhaf_1650" /EC_number="3.2.2.21" /inference="protein motif:TFAM:TIGR00567" /note="responsible for recognizing base lesions in the genome and initiating base excision DNA repair" /codon_start=1 /transl_table=11 /product="3-methyladenine DNA glycosylase" /protein_id="YP_002458132.1" /db_xref="GI:219667697" /db_xref="InterPro:IPR003180" /db_xref="GeneID:7258619" /translation="MIKVLKCGKEYSNKMKRLGREFYNRDSLIVARELLGKVLVHEIE GQKVSARIVETEAYRGIEDKAAHSYGGKRTPRVEVMYGGPGFSYVFMIYGMHYCFNVV TREEGNPQAVLIRAAEPREGSELMAQNRFKKSYHQLNKSQILGLTNGPGKLCRALSID KSLNGEDLCGGKLYVAEESQESLSIVTAKRVGIDYAEEAKDYPWRFYLEDSQYVSVK" gene 1764154..1764576 /locus_tag="Dhaf_1651" /db_xref="GeneID:7258620" CDS 1764154..1764576 /locus_tag="Dhaf_1651" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: ckl:CKL_2990 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458133.1" /db_xref="GI:219667698" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7258620" /translation="MTSGPDNSLGFVLNRTNNKLKNALIQILKPYDITPEQWGTLKRL WQQDGISPKCIAELTFKDQPTTVRILKKLEKKGLIFREVNLADNRSYLIYLTDRGKEL KDILIPLTEKKLKEVLKGIDQQEVQKLLEILNRIYENL" gene 1764619..1765983 /locus_tag="Dhaf_1652" /db_xref="GeneID:7258621" CDS 1764619..1765983 /locus_tag="Dhaf_1652" /inference="protein motif:TFAM:TIGR00797" /note="TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mta:Moth_2080 MATE efflux family protein" /codon_start=1 /transl_table=11 /product="MATE efflux family protein" /protein_id="YP_002458134.1" /db_xref="GI:219667699" /db_xref="InterPro:IPR002528" /db_xref="GeneID:7258621" /translation="MNRNLEMRDEKIDKLLWKFSLPAIIGMLVNALYNIVDRIFVGQG VGYIGIAATTVAFPIMIINMATSMLIAIGATALISIRLGEQKKEEAEKIAGNATGLLI LLPLLLTIVYLIFTDPILKLFGASAEVLPYARDFTHIIMLGSVSGSIAFGMNNFIRAE GNPRYAMLTQIIGAVLNVILNYTFIFKLGLGIKGSALASICSQTVSALFVLGYYFTNR STIKIHLRNLKPQPSIVFSILVIGFAPFAMQIANSIQQTILNKTLMVYGGDIALSAVG IIMSISTIIFMPIVGISQGAQPLIGFNYGAKQYDRIKETLKKSVLFSTILAVVGYVVI RIWPYQIIGLFSKDDVALTQLTVHAMLVFFALLPLIGIQILCSSYFQAVGKPLQSTLL NLSRQVLLFIPLLLILPNFWGIEGVWRTAPIADSLAVLITSTVILFEMKKLPKSVPIP QESV" gene 1766054..1767232 /locus_tag="Dhaf_1653" /db_xref="GeneID:7258622" CDS 1766054..1767232 /locus_tag="Dhaf_1653" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: fra:Francci3_4004 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458135.1" /db_xref="GI:219667700" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258622" /translation="MIEMPIYCLRVVDIRISLKEAIYLLTGWFTLFIIGTDLFVISPL LPFIAQEYAITPAVAGWLVTVFSLMYAISAPLFGWLSDRKGRRLLIVCGLFSFGIANF LTAISQSFAMLITSRIFAGLSVASITPLVYAIIGDTALPERRGVWLSIVVSGHLTALW AGAPLGTLLEQFLGWRSVFISLAVIAALLSILNFRVWASTNQAHPAEAQVKGSALKII SAVSVTAFWAIAMYALYVFLGTGLVLDNHFSSSELAASITAYGIGAVAGSLFSGRVTD KIGARKVSIFSTVMLVGILALLGFFLSAGTWVYFLLFLWALIGYASFTSYQARLAEEF PETRGMALALNNTALYIGITLGSMMGGFIITKWGFFTLPLICSGAALISSLISAKRKM" gene complement(1767332..1767841) /locus_tag="Dhaf_1654" /db_xref="GeneID:7258623" CDS complement(1767332..1767841) /locus_tag="Dhaf_1654" /inference="similar to AA sequence:KEGG:CKL_2490" /note="KEGG: ckl:CKL_2490 predicted ABC transporter, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter, permease component" /protein_id="YP_002458136.1" /db_xref="GI:219667701" /db_xref="GeneID:7258623" /translation="MLFFSGMLIAKDKTSSFMLRLFTSPLTSSHFIFGYTLPLFPMAV LQIAVCFAVAFILGLAININALLTIVVLILAAVLFIAIGLLCGALLANLTAWLSDIWF DLDLVGGAFKSIAEALPFVHAVEAGRAALAGDYSAIFPDLWWVICYAAVIMAIAILVF TNKMNSDTT" gene 1767951..1768190 /locus_tag="Dhaf_1655" /db_xref="GeneID:7258624" CDS 1767951..1768190 /locus_tag="Dhaf_1655" /inference="protein motif:TFAM:TIGR01439" /note="TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: tde:TDE0703 AbrB family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AbrB family" /protein_id="YP_002458137.1" /db_xref="GI:219667702" /db_xref="InterPro:IPR006339" /db_xref="InterPro:IPR007159" /db_xref="GeneID:7258624" /translation="MASPEGKYAWTVKVGEKGQFVIPKEAREIFNIKPGDTLIVLADE KQGIAIPPKDMFAQLAKAIFSQNRPPENDGREEEE" gene 1768190..1769260 /locus_tag="Dhaf_1656" /db_xref="GeneID:7258625" CDS 1768190..1769260 /locus_tag="Dhaf_1656" /inference="similar to AA sequence:KEGG:CKL_0551" /note="KEGG: ckl:CKL_0551 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458138.1" /db_xref="GI:219667703" /db_xref="GeneID:7258625" /translation="MSGNIAPPRKKYFDNIRSATIVLVLMYHVVYIFNSAGVVSNIPI QGIPALDSICYFLYPWFMCLLFVVAGISARYSLQTRSAGQFARERVHKLIVPYLGGAF LLGWLNGWVTAHYVDMFGGQAVPGFVKYLVYTLNIGPLWFLLELFVISMLLLLIRKLD RRDRLWTLAGKASLPLMVLLFLPVWGSSFVLNLPVVVVFRNGIYWLMFLLGYYVFSHD TVLAKLKQHAVLFSIIAVGLGVAEVLYFFGQNYASDACLQHPLTNLYLWMMILAILGC AQRWLDFSNSLTKYLQKRSFALYVFHYPLLVTAAYWLTTYTELPMAAVYLILLPFTFA APILFYEIVSRIPVIRYLLLGK" gene complement(1769347..1770165) /locus_tag="Dhaf_1657" /db_xref="GeneID:7258626" CDS complement(1769347..1770165) /locus_tag="Dhaf_1657" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: amt:Amet_0478 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002458139.1" /db_xref="GI:219667704" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7258626" /translation="MKYRIGEFSKLLGVTVDTLKHYESLQIIEPLKDEKNNYRYFDDY DARTIIKSRTLRSLNLPLDDVAKLMASDSTTDVVEIMEESKQALKEQIHKNTLLLNKM TEVQDEIIAINSSLHKFKIKSLPGLYRLQHTDKDHLLKNSSIENAVSSWMNALPYTFS CFRIKTEEFLSGLEIYDYDWGQAIWENELEYVDLKITEDIEYIPPQTYLSTVLSSTNR EYFLSNSRALIMNQINEQPYAIMGDIVGKLIFTSIKNGRRISYIEIYIPVQGEL" gene 1770375..1772522 /locus_tag="Dhaf_1658" /db_xref="GeneID:7258627" CDS 1770375..1772522 /locus_tag="Dhaf_1658" /inference="protein motif:PFAM:PF04205" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; KEGG: lac:LBA1411 fumarate reductase flavoprotein subunit" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458140.1" /db_xref="GI:219667705" /db_xref="InterPro:IPR002194" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7258627" /translation="MKKHCGTLLLCLLALSLVLTGCSGSGVKTGTKAGIYTPGTYTAQ AAGFGGKVSVTMTFDANAITDVKIEGADETPAVGGKAIEGFPGMLMEAQSADIDGISG ASYTSKAVLTAAANCVAQAKGEDTDQKTPVADGTYSGQAPGFSWTGMIKADVTFKDNT ITDINIVEEQETYTGEIFYTVLDNYIPRILEAQSLAVDGISGATLSSNGVRGCVEQAI EAAGGRSSEWYGEVARSTKIVKKEGYDVIIVGMGGSGITSFLSAAQAGAKVFGIETTA KLGGQSATTSGPMAANSQVKMDEEFGGKEYIDADALYKAWKDYCGADAKPEMIRMAID ESGETLDWMIKDWGFQFSPMSSFILSPYPDWKIWCYYGGETKNRFGTNKTYMFENAVK KAQAQNPAAEYMLELTAQELLMDGDKVAGVKAVYHDGTIYEIYGKTVILATGGFIGNA DMMKEYLDGPANTVAMTVDDGDGIKLGLSAGGALMNPDIPPMVHINQVANLIKNNDLD ADGKQVLTSLAIATDALAVDGNGKLWNTREEICLAPQYRYYNIYTAAQIEAIKTKGLA KVNKSMFMDQGGTVEAGKPIANIDEILKVGAGYKNVLTAESAEDLAKAIGCDAATLKD SLNGAQGPYYAVICSGYAYATCGGLNVDDAMNVLRADGSPIGNLYAVGQDSMGVLFSS DVPYTPYGGQAQSWALTSGRLAGANAAKYAMGK" sig_peptide 1770375..1770452 /locus_tag="Dhaf_1658" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.312 at residue 26" gene 1772573..1774819 /locus_tag="Dhaf_1659" /db_xref="GeneID:7258628" CDS 1772573..1774819 /locus_tag="Dhaf_1659" /inference="protein motif:PFAM:PF00724" /note="PFAM: NADH:flavin oxidoreductase/NADH oxidase; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbk:CLL_A1978 2-enoate reductase" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="YP_002458141.1" /db_xref="GI:219667706" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR001155" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7258628" /translation="MSLSRRQFLKGVGAAGVVAAGAGLSGCSPAAPAGSGSGSGSPAE GAPGGAAGAAAAGELIAAAYLNPQDYDYRQNTTDFKTLFSPLQIGPLNLSHRMVKSAA GSATYLAGLTDELLQYYVQFAKGGVELIWVEMVAALEPPSDGSPASGAALEFGRKLVA ECGKYGAKLGYQTYGFPLKPVNDMTKEDIAAFQARYVNTAQQIKQMGFAAFEINAAGF NLGEHFLSRFHNARTDEYGPGSLENRARFVTECIQKIKQACGSDFVVQVLIDCIEEND NLTNNATLATLDNAVTAPHNKVTTIEEGIGLARLIEAAGCDAMHLRLGPLDNHPCQFG SDLYFILNGIEGATGYGTQWDFSRHWQGQLIANHSGAGMLIDIVGRYKEALKIPCGTV TYMDPAHAPDYFEKALAEGKVDFYLMNRPLTVDTEYVNKLKEGRGDEIAPCTRCLHCH IGSNEMNREMGYCRVNALTQRVMTDKGPKTYELQPAAAAKKVMVIGGGPAGMEAARIA AARGHKVTLYEKTGALGGKLTFAGMVKGPHENLGDLKDYLARQLEVTGVTVVLSKEVD AALIAGEAPDAVILATGSLPGEVGVSGGNVPIIDYDRFMGNNTGENVVVFGSNAQAFD AALWLTVRKKKVTIVTPNPNEDLDKQQSHHAQRFMTTALYALGVKAYPGATIKEIGDG KITIASDYGVETVIPADSIINAADLLPNKSLLEGIGVKEKYAIGDCHEPYNIALAIRA GNDVGRAV" sig_peptide 1772573..1772680 /locus_tag="Dhaf_1659" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.482 at residue 36" gene complement(1774970..1775932) /locus_tag="Dhaf_1660" /db_xref="GeneID:7258629" CDS complement(1774970..1775932) /locus_tag="Dhaf_1660" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcl:ABC3060 drug/metabolite transporter (DMT) superfamily protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002458142.1" /db_xref="GI:219667707" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7258629" /translation="MQQSKQASNRSIWLIALGAAMWGLDGVFIVSLLQHVSSSQIVWL EHLLLFLFAAPVLIWKRQELKQLNGGDWLAVLFIGWGGSALASILFTAGFTYGNPNVV LLLQKVQPIFVILLASWMLKERMRKDFYALFVVALIGAYLLTFGLHLPTSGVSLAQLL GSLCAIGAAALWGGSTVMGKRLIGKLSFTTLTALRFAVALPLLTIIVLVQQPNWADLG QSLHLAPVWANLLYQTLVPSLLSLLLYYRGLNGVRASHATIAELAFPATGLLVNWLIL HQTIDLGQWLGFAIVWLVVLQLSRMPNDPKSAVKTSERANLAGL" misc_binding complement(1776072..1776221) /note="FMN riboswitch (RFN element) as predicted by Rfam (RF00050), score 105.24" /bound_moiety="flavin mononucleotide" gene 1776505..1777113 /locus_tag="Dhaf_1661" /db_xref="GeneID:7258630" CDS 1776505..1777113 /locus_tag="Dhaf_1661" /inference="protein motif:PFAM:PF01427" /note="PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: fre:Franean1_7136 peptidase M15D VanX D-ala-D-ala dipeptidase" /codon_start=1 /transl_table=11 /product="peptidase M15D vanX D-ala-D-ala dipeptidase" /protein_id="YP_002458143.1" /db_xref="GI:219667708" /db_xref="InterPro:IPR000755" /db_xref="GeneID:7258630" /translation="MKSDFVFVDELVSGIRWDAKYATWDNFTGKPVDGYAANRIVGTR ALCAALEKARENAASLGFGLLLWDGYRPQCAVDCFLRWSKQPEDGRTKQKHYPNIDRS EIIEKGYVAAKSGHSRGSAIDLTLYHLASGTLVPMGGDFDLMDSVSHHGAHGISQAEA RNRQYLCSIMEASGFVSYACEWWHYSLKHEPYPNTYFDFLIA" gene 1777269..1778630 /locus_tag="Dhaf_1662" /db_xref="GeneID:7258631" CDS 1777269..1778630 /locus_tag="Dhaf_1662" /inference="protein motif:TFAM:TIGR01143" /note="TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase" /protein_id="YP_002458144.1" /db_xref="GI:219667709" /db_xref="InterPro:IPR000713" /db_xref="InterPro:IPR004101" /db_xref="InterPro:IPR005863" /db_xref="InterPro:IPR013221" /db_xref="GeneID:7258631" /translation="MEMTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPL KGEKADAHTFLHAAFASGAAAALTQEHMRMEAEEAWIAVDSTQLALQQIAAAYRQRFS IPVVGITGSAGKTTTKEMTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVV EMGISDFGEMARLAQVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVL FLNGDDPMLAGLRGKTGYETVFYGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVT LPVLGMHHVLDALAALAVAERLGVPLKRAAAALRDYRPLAMRQQIYHVNEVAVIDDSY NSSPGAAKSSLSVLAGFRAGRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTV GQEAKAVAEGARSVRAGIDCRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVR ALL" gene 1778711..1779541 /locus_tag="Dhaf_1663" /db_xref="GeneID:7258632" CDS 1778711..1779541 /locus_tag="Dhaf_1663" /inference="protein motif:PFAM:PF04294" /note="PFAM: VanW family protein; KEGG: efa:EF2296 vancomycin B-type resistance protein VanW" /codon_start=1 /transl_table=11 /product="VanW family protein" /protein_id="YP_002458145.1" /db_xref="GI:219667710" /db_xref="InterPro:IPR007391" /db_xref="GeneID:7258632" /translation="MKRKRLTQLFPFLLPVRRIQRKLCFYTKMYLDRNHYAKAKAPEF LPFCIYETKSKLLNENTGMDIKYQENKVFNLRLAAEPVNGLLIRPGETFSFWQRVRYA EKNERYKDGLCVVNDELVTVPGGGLCHLSNLLFWLFLHTPLTIVERHAHEIKDFPSPD EDEPDGVDATIHEGWLDLKVKNDTNLTFQIELSIDGPYIYGRIFMDQAKGYSYEVVNR DKRFLQKEGKIFERVSVCRQVIDNKSKQVISENMLYTDVFEIGYPLPEGTAIAEEKEI" gene 1779555..1780580 /gene="vanB" /locus_tag="Dhaf_1664" /db_xref="GeneID:7258633" CDS 1779555..1780580 /gene="vanB" /locus_tag="Dhaf_1664" /EC_number="6.3.2.4" /inference="protein motif:TFAM:TIGR01205" /note="vancomycin B-type resistance protein; catalyzes the formation of D-alanyl-D-lactate in peptidoglycan synthesis" /codon_start=1 /transl_table=11 /product="D-alanine--D-lactate ligase" /protein_id="YP_002458146.1" /db_xref="GI:219667711" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR000291" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR003806" /db_xref="InterPro:IPR005905" /db_xref="InterPro:IPR011095" /db_xref="InterPro:IPR011127" /db_xref="InterPro:IPR011761" /db_xref="GeneID:7258633" /translation="MSKLKIAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGIT KDGVWQLCHYPEANWEKGSCRPAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKF GEDGAIQGLLELSGIPYVGCDIPSSALCMDKSLAYIVAGKAGIATPKFRTVTAKETID AERLAYPVYVKPARSGSSFGVTKVCRQEELLSAVEIARQYDSKVLIEEAVVGSEVGCA IFGNDLDLMAGEVDQICLSHGFFRIHQENEPEKGSENSTLIVPADISPEARSRVQETA KAIYRALGCRGLARVDMFLKEDGTVILNEVNTLPGMTSYSRFPRMMAAAGLPFAEVID RLVSLAF" gene 1780778..1781476 /locus_tag="Dhaf_1665" /db_xref="GeneID:7258634" CDS 1780778..1781476 /locus_tag="Dhaf_1665" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_0022 VanR" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458147.1" /db_xref="GI:219667712" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258634" /translation="MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAK EKLDLAILDVMLPDVDGFSICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITK PFRPLELIARVKAQLRRFTKYNSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTP TEFSILWVLCSNRGRVVSSEELFNEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPK YIKTVWGVGYKIEK" gene 1781466..1782599 /locus_tag="Dhaf_1666" /db_xref="GeneID:7258635" CDS 1781466..1782599 /locus_tag="Dhaf_1666" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_0023 VanS" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458148.1" /db_xref="GI:219667713" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR008358" /db_xref="GeneID:7258635" /translation="MKSERDKRRNDYTKLKRELFLRMLLIVFATAATVIFLRFVIQKN FSVGDSIVRFLMTAFDLRENVAVLIYRSVFYSNIEIITFIVILVFVVILLNLSTSWFT KYFDEVSAGMDKLVEESAAEIALSPELDFMENKLNQIKNNLEKQKKAALEAEQRKNDL VVYLAHDIKTPLTSVIGYLSLLDEAPDMPPEQKAKYVGITLEKAYRLEELINEFFEIT RFNLQTIVLNKEKINLQFMLQQLADEFYPMLAPQAKQVSVNVPDGLTLWGDADKLARV FNNILKNAIAYSYENSVIDIAAGQQDKTMVITFTNQGDPIPQKKLETIFEKFYRLDSA RSTNTGGAGLGLAIAQEIVKAHDGTISVESNPENTTFTVKIPL" sig_peptide 1781466..1781561 /locus_tag="Dhaf_1666" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.689) with cleavage site probability 0.558 at residue 32" gene 1782915..1783787 /locus_tag="Dhaf_1667" /db_xref="GeneID:7258636" CDS 1782915..1783787 /locus_tag="Dhaf_1667" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_4743 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458149.1" /db_xref="GI:219667714" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258636" /translation="MKTGKLKTNNGGLAWFFLGPSLLGFALFYLLPFVTGFYYSLVDS PLNGTFVGLHNYGALLKKPSFLAALANTAKFTLICVPLNLMLSLGAAMLLNQKLPGRN LFRTIMITPLVVPVASVVLVWQAFFDLNGVLNSLIHALGHPSVDWMKTNWSRVVVLVI YLWKNIGYSVILFLAGLQNIPAEYYEAARIDGASRYQEFFRITLVYLTPTTFFVFVIS MINSFKVFRETYLISGDYPHNSIYMLQHYMNNMFMALDYQKLTSAAFIMAAFIVAVVL LLFIVERKITNMIN" gene 1783812..1784696 /locus_tag="Dhaf_1668" /db_xref="GeneID:7258637" CDS 1783812..1784696 /locus_tag="Dhaf_1668" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_4742 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458150.1" /db_xref="GI:219667715" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258637" /translation="MKGNHRIRNLIHFAILLVLAVLLMFPLAVTVTNSLMSEQEIAAH YNPVTDKNLSSYQEDSGDHFARFQLIPEVVVLKQYYNVLIKKTQFLFMFWNSVLLTFP IVIGQTMVATLAAYAFAKLKFRGRNFLFFLYIIVMLMPFQVTLVPNYLMAGQLGLLNS HWSIILPGIFSTFGVFLLKQYMEQIPDSYLEAARVDGASQFQIFLKIILPMSRGGIAA MAILVFIDNWNMVEQPLIFLQDAAKQPLSLYLSRIIDGEKGLAFAASVLYMLPALLNF LYAEKYLLEGIRLSGIKG" sig_peptide 1783812..1783904 /locus_tag="Dhaf_1668" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.441 at residue 31" gene 1784790..1785956 /locus_tag="Dhaf_1669" /db_xref="GeneID:7258638" CDS 1784790..1785956 /locus_tag="Dhaf_1669" /inference="similar to AA sequence:KEGG:Amet_4741" /note="KEGG: amt:Amet_4741 RND family efflux transporter MFP subunit" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_002458151.1" /db_xref="GI:219667716" /db_xref="GeneID:7258638" /translation="MGNEAIAGDGQRKKLIGKLSLLFLMTMIGLTFFSNTINNFALPR VQTVRPTNGALIKEIFGEGTVEVKSTREEYADANLRVKEVRVEQGDRVSKGRTIIILD VDGLKSDYQDEQARYRQLQLSLAGAQAEQAQKQRDYDNLKVLFDHEAETAVNLENAAR NLADAQRHCEDIQLNLEIQARKVAALAQQVANNGVYTAPVDGLITELNFPAGSMTNSS LPLFKLADLGQGFRLIVPIDKDLLDYVKPGDTVSVNMLSLGDQKTEGTIDRIVENSRH NGEEKDLWIDVSLEGLSGGEKGEIYLSKKTKPYDTLVPNSAVYDDSSGSYVFVLESRK GPLGTENYLQKVNVNVEDRDREMSALTDMVMGEVVWQSNKPVEDGDRVLKEGAN" gene 1785953..1787383 /locus_tag="Dhaf_1670" /db_xref="GeneID:7258639" CDS 1785953..1787383 /locus_tag="Dhaf_1670" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_4740 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458152.1" /db_xref="GI:219667717" /db_xref="GeneID:7258639" /translation="MKPAQLKQDKSAYPAYLVLALGLLVLTWSTLLGSSLPAQLADLG GLHKTGKITATWLGGSHQPEEGSFSLQDLRQLSQYSLRDYDLAYAMEASTSAAYQKNQ SPAQVLGVNDRYAQFQQINMRSGNFLTFEQENQQVAVIDEELAQALFQNGNVVGLEIE LYGREFKIVGVAGNDRFLIGTLTDRGYGTLYIPAKKLLELEADARITSLAVATKDAGT TGRNTAVLASALASIGQDTANYKIIDYNLAGLLMEQGNQLRHFGAGTVAMVMLFSLLR RKIKGIDHFCRLRLRDNYWWEMIKGDAVRLVFGIAAVSALAAVLLLVWKSISFSLYIP PQNIPNELIDVSFWADLIKKGIETRQQSAGYAAPPGEVQLNVLNTIQNWNLFLNIFLG WPLFLLGLYQTQLLQEKLLKVEVFCSIFLLAALSLGTALLWLIKMPLVMETGEVLLVF SSVFLTVVTFIDRRAADGGFTSEKFS" sig_peptide 1785953..1786075 /locus_tag="Dhaf_1670" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.903) with cleavage site probability 0.757 at residue 41" gene 1787352..1788473 /locus_tag="Dhaf_1671" /db_xref="GeneID:7258640" CDS 1787352..1788473 /locus_tag="Dhaf_1671" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tte:TTE1979 ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458153.1" /db_xref="GI:219667718" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005116" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258640" /translation="MAGLHLKNLAKTYPGGVAAVRDFSLEIKDQEFLILVGPSGCGKT TVLRMIAGLEEISAGELYIDDRLVNEVAAKDRDIAMVFQNYALYPHLSVYDNMAFGLK LRKLPKVEIRKNVEEAARILGLEALLQRKPKELSGGQRQRVALGRAIVRKPKVFLMDE PLSNLDAQLRTQMRIEIAKLHKNLQTTFVYVTHDQTEAMTMGTRIVVMKDGLIQQIDS PQAIYDHPVNMFVAGFLGSPGMNFLEVLMIEEKGCIYAKLADALLPVPAAGGQRLKEQ GYLDRKVVLGIRAEHLWGSGDFGDRHSEWALEGRLEFSELRGAETYHYVRIAGREVVV RVSPELRAATGQEVRVGFNMAKAHFFDQENGVNICILNN" gene 1788492..1789871 /locus_tag="Dhaf_1672" /db_xref="GeneID:7258641" CDS 1788492..1789871 /locus_tag="Dhaf_1672" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_4739 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_002458154.1" /db_xref="GI:219667719" /db_xref="InterPro:IPR006059" /db_xref="GeneID:7258641" /translation="MIKNKCGVILSLVLILGIGVFTVGCGNTQAAGGANDPNSLTIAV VSKDTYLDTAVKKFAELHPGVRVEVKEYTSSTSEKGEGVRAAESGDIEKYVTAMNTQL MSGQGSDIILLNNLPYQTYADKNLLVDLGGLMQSDQSFDRGKYYQNIFKALEYKDKLY GLPVNISIDMIAADQTLLADSQVSIDDSNWDWQDFVRTAEKIMNDKQNGETQGMYALA GMDEKRLIGTLVKENYDKLVDPEKKTANFTGQEFLDLLSLSKYLIDHKLVNTDTAQTN IMDMAARGKLVFNFTSLQGFWALQTTKAIFSEGVQLLKPPGNVSFATDSLYGISSQSA HQVLAWEFLKFLVSDEMMTQGGLPINKSVLPQVAQNFTQAIQTRGGKMMIKDDGIPGQ SITLQPPTQEDVDYLENLLSQAKVYIGTDQKIIAIVQEETAAFFTGQKTAEVTAQLIQ DRVSTYLNE" sig_peptide 1788492..1788584 /locus_tag="Dhaf_1672" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 31" gene 1790101..1790802 /locus_tag="Dhaf_1673" /db_xref="GeneID:7258642" CDS 1790101..1790802 /locus_tag="Dhaf_1673" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bcy:Bcer98_0264 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458155.1" /db_xref="GI:219667720" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258642" /translation="MTKEKILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFR MNQPQLVILDIMMPGLDGMEVCRRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIV KPFSPGEVVARVKAQLRRFKMSAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTK EFELLRFLALHPNQVLTREQIFANVWGFNESGDLNTVTVHIKKLREKIESDLANPTFI KTVWGVGYKFSGGAK" gene 1790799..1791857 /locus_tag="Dhaf_1674" /db_xref="GeneID:7258643" CDS 1790799..1791857 /locus_tag="Dhaf_1674" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bcz:BCZK4418 sensor histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458156.1" /db_xref="GI:219667721" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258643" /translation="MKLDIRVKFILSFFVILLIPVLMTPAAVGSNLDAGGQDISLRIV IIGIPFVGYFAVLSWYLTRNYLLPLQQLLEATQKIAEGNLDFSISYQKENEMGALCEA FDLMRQNLKASLEQQNHLNHSRQELIASISHDLRTPLSSIRGYVEGLPKAVHDPEKLN RYLSVLKNKTALLDTLIERLFEYSQLDMDDSQGAFCLWDAKEMLESILAPVELEFADQ LVQLLLARPFPSVPIEANPDQIAQVFDNLISNARRYLGEKGTIAIAAKVEGADLHISV TDDGTGIAPEDLPHVFDQFYRAEKSRSRSFGGAGLGLAICQKIIENHGGEIWAESEVG VGTRFSLRLPVLTQNDCD" sig_peptide 1790799..1790888 /locus_tag="Dhaf_1674" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.861 at residue 30" gene 1791900..1792298 /locus_tag="Dhaf_1675" /db_xref="GeneID:7258644" CDS 1791900..1792298 /locus_tag="Dhaf_1675" /inference="protein motif:PFAM:PF00717" /note="PFAM: peptidase S24 and S26 domain protein; KEGG: swo:Swol_1149 signal peptidase I" /codon_start=1 /transl_table=11 /product="peptidase S24 and S26 domain protein" /protein_id="YP_002458157.1" /db_xref="GI:219667722" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR011056" /db_xref="GeneID:7258644" /translation="MENAKNLKPAGKSTARSILEWVGVIVIAFALSWLIRTFVIEPRY VPSGSMLPTIQLQDRLIVDKFFFKYFDELHPGDVIVFHPPSEAHASDDFIKRLIALPG NGDFCPSTASRAEPFSAIGLLNVSGLWPAK" gene 1792512..1792838 /locus_tag="Dhaf_1676" /db_xref="GeneID:7258645" CDS 1792512..1792838 /locus_tag="Dhaf_1676" /inference="similar to AA sequence:KEGG:Clos_2296" /note="KEGG: aoe:Clos_2296 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458158.1" /db_xref="GI:219667723" /db_xref="GeneID:7258645" /translation="MLGADWLNIGSLVFGLIAWALPVVILAQGNKAKARNRVAFCAAA SLSACAIALWMQILYTDHLVKIEDWSALMDTSSAVALVAGLLLTVAIALNAITFIVYR GKQLKD" gene complement(1792939..1793361) /locus_tag="Dhaf_1677" /db_xref="GeneID:7258646" CDS complement(1792939..1793361) /locus_tag="Dhaf_1677" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458159.1" /db_xref="GI:219667724" /db_xref="GeneID:7258646" /translation="MKLIFVLALTGLLVFTGITGCTPAKNSTVDPAIQSQADASQNPT ASDQDQIDKTKIRNTAFQWLKNQEAKVKEWETAQVIETKYTDDHNVYKADEIINIKGM DTLKVVFEMEDDIWGSIAIAVYVDKATEEVLGMDPIAR" sig_peptide complement(1792939..1793019) /locus_tag="Dhaf_1677" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.940) with cleavage site probability 0.726 at residue 27" gene 1793624..1793944 /locus_tag="Dhaf_1678" /db_xref="GeneID:7258647" CDS 1793624..1793944 /locus_tag="Dhaf_1678" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: bcz:BCZK2734 PadR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002458160.1" /db_xref="GI:219667725" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7258647" /translation="MAREKYQTLTEQMFYILICLKNEACGVDIMKMAAELTDGRVLIG PGTLYSLLDNFVKEKMIIETKTENRKKSYIITNLGEEMLEKEYRRLTKQKSDYEALVK GGGQ" gene 1793944..1795332 /locus_tag="Dhaf_1679" /db_xref="GeneID:7258648" CDS 1793944..1795332 /locus_tag="Dhaf_1679" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpy:Cphy_1361 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458161.1" /db_xref="GI:219667726" /db_xref="GeneID:7258648" /translation="MKDKVKKVINFRFDRYKDIEIKLEKLAAKGLFLEECGAFLWTFR KGEPKSLKYTVTYFSEGSVFNPDITDNQQTYFDYAKAAGWNFVTQFNQMQIFYSEADN PIPFETDEKEKFDNIKRCMRKSFLPSIMIMMLVCVFNLVVQFNSFQLNPIEFLSDPGR LFSAAMILAVVIYEVYFLLDYLIWCKRSERSIAGGGECVENISMVRRIVHIIFMSFFL AGFGYFLYYLVFKISWFGVFLCIIQMPILLIVFRLSINYLKMKKASAAINKVISITVL IIADFVYLAFIVLFTIKLGFNIGADSDYRTVVWPVTATTSHEYRLYRDDIPLTCEALY GDLDYDYYSYEKEINSTLFLTQSNYRQDSLPAKDAPPRLVYDILEPQFKFIYHLAKNH LLEIPQWRDDESYEPIDNKIFGTVEAYQQYYDDTPTGEYILLFEKKIIVLNMEEPPTT KQISIIKEKLRI" gene 1795653..1795976 /locus_tag="Dhaf_1680" /db_xref="GeneID:7258649" CDS 1795653..1795976 /locus_tag="Dhaf_1680" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: cbt:CLH_2494 transcriptional regulator, PadR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002458162.1" /db_xref="GI:219667727" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7258649" /translation="MENLTEMLKGVLEGCVLEIISHEEIYGYEITRRLNALGFSDVVD GTVYTILVRLEKNKLVEITKKPSDMGPPRKFFTLNDAGRKELRKFWEKWEFVSSKLNE LKGEI" gene 1795976..1796323 /locus_tag="Dhaf_1681" /db_xref="GeneID:7258650" CDS 1795976..1796323 /locus_tag="Dhaf_1681" /inference="protein motif:PFAM:PF06304" /note="PFAM: conserved hypothetical protein; KEGG: ckl:CKL_3536 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458163.1" /db_xref="GI:219667728" /db_xref="InterPro:IPR008316" /db_xref="GeneID:7258650" /translation="MNFWEKITGSDMTKEWKAFESRVQKLPADYQAAWEKISLNLWPH SDFTGRNLMPILDGVLGLLEETAAEGQRVQEVLGDDIKGFCAALAGEEGAKTYRDKWR EQLNHNIAKKLGK" gene 1796333..1796683 /locus_tag="Dhaf_1682" /db_xref="GeneID:7258651" CDS 1796333..1796683 /locus_tag="Dhaf_1682" /inference="protein motif:PFAM:PF06304" /note="PFAM: conserved hypothetical protein; KEGG: ckl:CKL_3535 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458164.1" /db_xref="GI:219667729" /db_xref="InterPro:IPR008316" /db_xref="GeneID:7258651" /translation="MRIQDIIEGKKEWRGHMARVKALPRDYQIVYKELQKYLFKVGPV ELTDGMGLLSGIIDLFEEGAALGKGVLEVTGRDVAAFCDDLIKDSKTYADIYQESADQ EVCKAMKKVTDKTK" gene 1796699..1797460 /locus_tag="Dhaf_1683" /db_xref="GeneID:7258652" CDS 1796699..1797460 /locus_tag="Dhaf_1683" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3447 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458165.1" /db_xref="GI:219667730" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258652" /translation="MEKAIEVKGLRKSFKDTEVLKGVDFEVRRGEIFALLGPNGAGKT TVVNILSTLLKSEVGTASICGFDVARQPGKVRENISLTGQFAAVDEILTGLENIILIA KLRGVPKPAQVAEELLKRFGLSNAANKRADTYSGGMKRRLDIAMSLVGKPNLIFLDEP TTGLDPEGRLEVWKTIKELAGSGVTILLTTQYLDEAEQLADKIAILNEGKIIANGTLE ELKKLFPPAQKEYIEKQPTLEEIFLAIIGKGRQTK" gene 1797457..1798212 /locus_tag="Dhaf_1684" /db_xref="GeneID:7258653" CDS 1797457..1798212 /locus_tag="Dhaf_1684" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: lmf:LMOf2365_1001 ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002458166.1" /db_xref="GI:219667731" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:7258653" /translation="MKNNTVVLTGRLMKHILRSPDTIITVALTPIAMMLMFVYVFGGA VRMSMGADVNYVNYQLPGILLIAIASGIAYTAFRLFMDMQKGLFSRFNSMPISRSSVL WSHVLTSLVSNMLTVVIIILVALIMGFRSNAGILNWLAAAGILALYTLALTWIAVIPG LTAKSMEGASSFSYLLLFLPFLSSAFVPTETMPKVVRVFAENQPVTSIVETIRVLLNA EPVGNDIWIALAWCVGIIVVAYLFAMRAYRSRI" sig_peptide 1797457..1797609 /locus_tag="Dhaf_1684" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.817) with cleavage site probability 0.475 at residue 51" gene 1798462..1799172 /locus_tag="Dhaf_1685" /db_xref="GeneID:7258654" CDS 1798462..1799172 /locus_tag="Dhaf_1685" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: cpr:CPR_0149 hypothetical protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002458167.1" /db_xref="GI:219667732" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7258654" /translation="MGYMNQSKDRIKFWVYLLAVIAGLIGIVVYLKSSGILNYMSTAE EFKNYIEGYGEKAYLAFFILQLISVIIAPIPSNVSAVVGGTVFGMMGSFLISMLAILI GSSIVFMLGKKFGRTFVERFVSPKVLDKYEQYFSSRKGELLLIVLLFLPFFPDDAMGF VAGLSKISLGRYVVIMLLTRPWEILAASALGSFNIAMPLWGWGVMALVIIGIAKNSDK LEKRLVAAVQGVKNSGRC" gene complement(1799253..1801115) /locus_tag="Dhaf_1686" /db_xref="GeneID:7258655" CDS complement(1799253..1801115) /locus_tag="Dhaf_1686" /inference="protein motif:TFAM:TIGR00711" /note="TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: CBS domain containing protein; major facilitator superfamily MFS_1; KEGG: ckl:CKL_2882 predicted transporter protein" /codon_start=1 /transl_table=11 /product="drug resistance transporter, EmrB/QacA subfamily" /protein_id="YP_002458168.1" /db_xref="GI:219667733" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR001411" /db_xref="InterPro:IPR004638" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258655" /translation="MNKQAKITAVVLMLGAFISVLNQTLINPALPTIMEELHIEATTA QWLVSGFTLVNAIVIAISAFLMDRFRTKQLFLSIFVLFLAGSLLASWGVNFTVLLIGR LLQAICAGIMMPLSMTIILLLFPHEKRGSAMGMYSLVIMVAPAIGPVLAGVLTDKVGW RIMFLVMAVLAGAIILLASLIMKNYGDVKQTTLDKPSFTMASLGLLALLYGFSLLGNI SMILTASALVLAGVVILFLFVRRQLSLTQPFLQIKVLGNAQYRNGTIILMLIQASLAA ATITLPIYIQTVRGMSATVSGMVMMPGAILGAVFGYFAGKLYDAFGARYVGLFGGFLL LLGSLGMALFDFDTTIGFMTAAYTLRSVGLMLANTPINMWSIKKLPDEILHHGNAVGI TLRQVATTLCTAVMVSVMSFASSVYAAKGEIQSQMYGISMTYWLSVVIGLVALILVAV KVKNRKKTVAAVTEAVYELDIAMRADPYTVSCDDNLKQVVEKFIGYKTSGLPIIDAQK HLIGFVSDGDVMRYFTKQDLRFVAEFYSAVIPDTDTLNSKARKLLSMNVMEIASPNAI AVSHDTPLLEVCEIFSRRKINKLPVTQNDILIGTISRGDIMRALMTRLPLGGED" sig_peptide complement(1799253..1799321) /locus_tag="Dhaf_1686" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.889) with cleavage site probability 0.700 at residue 23" gene 1801348..1801545 /locus_tag="Dhaf_1687" /db_xref="GeneID:7258656" CDS 1801348..1801545 /locus_tag="Dhaf_1687" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458169.1" /db_xref="GI:219667734" /db_xref="GeneID:7258656" /translation="MAGKRNGCKDALSNIVVKYADKQCSDADNRTDYSTACFGRTAFR NAMAKLPGYTYRLVITNLGIF" gene 1801569..1802069 /locus_tag="Dhaf_1688" /db_xref="GeneID:7258657" CDS 1801569..1802069 /locus_tag="Dhaf_1688" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_1809 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458170.1" /db_xref="GI:219667735" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7258657" /translation="MDTKLEDFKLRFAEINDAPLILELIRELADYEKMAHEVVATEEV LIESLFERKMAEVVIGEYKNAPVAFALFFHNFSTFLGRPGIYLEDLYVKPDMRGKGIG KMMLAFLAKLALERNCGRLEWWCLDWNEPSIQFYKQLGAVPMAEWTVYRVHDEALAEL AVKFDG" gene 1802071..1802829 /locus_tag="Dhaf_1689" /db_xref="GeneID:7258658" CDS 1802071..1802829 /locus_tag="Dhaf_1689" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: pat:Patl_2981 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF81" /protein_id="YP_002458171.1" /db_xref="GI:219667736" /db_xref="InterPro:IPR002781" /db_xref="GeneID:7258658" /translation="MDYVLHMLDLTGIQGMVVMLTAFLVGFSKTGVSGVLMLVIPVLA TVFGGKDSTGVLLPLLLVGDIFAVWSYRRSIDWKKVLAPLPWALIGLFLGAVVGRVIA DQVFVILIGTIILFCLGILVYTEKMGKNFTVPTGTWFYITAGILSGFATMIGNAAGPI FSVYLLALGLHKNDFMGTNALFFFIINSIKVPVQVFAWHNMELQSFILAGVMVPMVAL GAALGLWVIKKINERFFRYLIICMTALSALRLLI" gene 1802927..1803205 /locus_tag="Dhaf_1690" /db_xref="GeneID:7258659" CDS 1802927..1803205 /locus_tag="Dhaf_1690" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: swo:Swol_1972 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002458172.1" /db_xref="GI:219667737" /db_xref="InterPro:IPR003756" /db_xref="InterPro:IPR006442" /db_xref="GeneID:7258659" /translation="MREVIRPSADLRNHYSEISKQCKETREAVIITVNGRGDTAVLGL QDYYQMKSELELLRTLAEAEDDVRAGRVALMKDSFDELRASLLERKNV" gene 1803202..1803513 /locus_tag="Dhaf_1691" /db_xref="GeneID:7258660" CDS 1803202..1803513 /locus_tag="Dhaf_1691" /inference="protein motif:PFAM:PF05016" /note="PFAM: plasmid stabilization system; KEGG: swo:Swol_1971 hypothetical protein" /codon_start=1 /transl_table=11 /product="plasmid stabilization system" /protein_id="YP_002458173.1" /db_xref="GI:219667738" /db_xref="InterPro:IPR007712" /db_xref="GeneID:7258660" /translation="MKYQILRTDKAEEQLRNIIFYIADDSGDVDVALKYLDKIEAAIN RLQDFPESGSVPRYSALRKQGYRVIIVEKHLVFYKIDQEEKAVIIYAIVDGRREYHNL L" gene 1803722..1804396 /locus_tag="Dhaf_1692" /db_xref="GeneID:7258661" CDS 1803722..1804396 /locus_tag="Dhaf_1692" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: spi:MGAS10750_Spy1700 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458174.1" /db_xref="GI:219667739" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258661" /translation="MTTWVIVIYLNIELDRNEVAVIYPKFYSLEAEKRERIINAALKE FARNGYEKASTNEMTKEADISKGSLFSYFNTKKELYLFLLDYVVEVIESIYDEVDWQE TDLFERMRKIGLIKFKIYKKFPHAINFLKVAAHEDAGEVKAEIAETGRHLIADGLGRG YENIDWTKFREDMEREKMLNIITWTILSFAEQQRDRVESFEDLSLDLLREWDGYFDIL KRCFYK" gene 1804414..1805112 /locus_tag="Dhaf_1693" /db_xref="GeneID:7258662" CDS 1804414..1805112 /locus_tag="Dhaf_1693" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2651 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458175.1" /db_xref="GI:219667740" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258662" /translation="MLIEVANLKKSYASGAMTNEVLKGIGMKLGKGEIGVILGPSGSG KSTLMNIIGGVDRGDSGEVMVGGVEINHLNDDQLTDYRRQDIGFVFQFYNLVPNLTVG ENIEVVANISKAPLNVDEVLAAVEMTDKKRRFPRELSGGEQQRVSIARAIVKNPQLLL CDEPTGALDYQTSRSILQLLERVNREYGTTILMITHNEAIAAMANRVFKLRSGEIVEA AVNQVIIPAERIEW" gene 1805112..1807361 /locus_tag="Dhaf_1694" /db_xref="GeneID:7258663" CDS 1805112..1807361 /locus_tag="Dhaf_1694" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: cbe:Cbei_2652 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458176.1" /db_xref="GI:219667741" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258663" /translation="MALNKRVWRILKENPLRYLGVLMLIVLGSYTFVVAAGIAQNLDT LITTFTEGHQQEDLSFATDKAIPDSGELERAVHAVIEEYRSFDAALSDSLTLRLLSKT KKLNIPAVIEGRGLAGPGEILLDPAFAKANGYSLGNSIKAAGKNFTVVGYVSLPHYIY PLKNVYDIMVSPSNFGVGVIDPAEFADIGNGSLFYSVRFQDRTQSLNQQAVQFRERLH AEGVTESEWVDIMNNKRARMAWASITGLKTMSIPVPAAMFLLCCLIIGIMIWRMIRRE GVIIGTLYAQGYRRRELMGHYMTIPLLLAVAGGAAGSLLALLSVAPAITGMVSYYNVP VAGVELNLWHALIGVLTPVLFLGLSSYLVIRLELRRSPAELMKGSEQKTKVNALERAF KLERFTFGTKFKLREQLRSISRLLFLFLGVISASVLMLLGFTIMNSMGYVFKSSTEGT YRFEYEYAFKDLHYGQAPAGAEVFNAGRFYPEDEEEIEFYVTGVEPDSAFLTLTDSKG QPLPNDQINVTKPLAEKLGIKAGDRVSLISKQDGQPYVFSIDAVADSYAGQFIFMPVE ALNRQLGLPANSYTGLWSTEKLAVPDEQLAGTKSLSETAAAMDELLGPMLSMVGMMTL IACMVSLIIIYLVTSLMIEENKNTISLFKIFGYRRREINALILNSSTLVIVAGFLIGI PVMAASMGAIYGYVGGMINLVLPTVINPLYVVVCFGAIMLTYQLSKLLCARKVHAVSM SEALKAGTE" sig_peptide 1805112..1805219 /locus_tag="Dhaf_1694" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.481 at residue 36" gene complement(1807411..1807866) /locus_tag="Dhaf_1695" /db_xref="GeneID:7258664" CDS complement(1807411..1807866) /locus_tag="Dhaf_1695" /inference="protein motif:PFAM:PF00011" /note="PFAM: heat shock protein Hsp20; KEGG: cth:Cthe_3125 heat shock protein HSP20" /codon_start=1 /transl_table=11 /product="heat shock protein Hsp20" /protein_id="YP_002458177.1" /db_xref="GI:219667742" /db_xref="InterPro:IPR002068" /db_xref="GeneID:7258664" /translation="MFDLVPFEGRNSGLPRKSRNLFDIDSIFENFFNDTLFPAFYNQS GQMRVDVRENEKEFIVEAELPGVNKEEIQIDCTEDRLTITVQKTESTEEQKDNYIRKE RKASSMARSFAIANIRHEEITAKYENGLLTVTLPKHEKTAPKGKKIDIQ" gene complement(1808506..1809621) /locus_tag="Dhaf_1696" /db_xref="GeneID:7258665" CDS complement(1808506..1809621) /locus_tag="Dhaf_1696" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: aoe:Clos_0194 S-layer domain-containing protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458178.1" /db_xref="GI:219667743" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258665" /translation="MDFGSHLRQLRENHMLSTSRLSKLSGLSQSFIFRIESGEKQPTL ETLRKLAQGLGISLGELLGEEMLSEPQSPKISRIIGNIRKLPVEQVDALDLFLASLSS SYAVGENPLTVQAINLKNSAGDGFEMEVVFSSNVSAIMEHRIPDGTNRNMAGFHLYDG EMKEIPIEIISGSKKMLGQRAERIFVIKPKIRLTDGRFYKLTISKLLQANNYKYLKEN HTILFTTREIVDITPYNKKLCSPYLSLALEKSNINSGDENIPVNTEIRLTFSNNVITK AVRDNNLHCFSLRSSKNQIVEIDVIMGDPDDNSDKKKEIVIRPQQHLLANTLYILTIS ENLQGGNQKLLGRDKAIIFTTDETGAATAGQGGVGIA" gene 1810117..1810242 /locus_tag="Dhaf_1697" /db_xref="GeneID:7258666" CDS 1810117..1810242 /locus_tag="Dhaf_1697" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458179.1" /db_xref="GI:219667744" /db_xref="GeneID:7258666" /translation="MLCNQGEAGRRVRLVFDNDGDKPISRTRWSAPALILKEGKL" gene 1810239..1811522 /locus_tag="Dhaf_1698" /db_xref="GeneID:7258667" CDS 1810239..1811522 /locus_tag="Dhaf_1698" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hmo:HM1_0138 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458180.1" /db_xref="GI:219667745" /db_xref="InterPro:IPR003961" /db_xref="GeneID:7258667" /translation="MMKEFLSRKRTQFFSVLMVAVLMIASFVPSAFALNYNGTGSGTG NKSLDFNGYEYTKTGGTATLNLYFNKSLASSQVTGGQFQVKLHNSPYTPASFTYTNLQ VGSNASGVTDSGLTNGSTVTLSFASALADDTLYDVVINAATLADAQGAGGGGSGSGPG KTLGNYTDRVGFTFTFRTPDSLGGYSNVAPVVTFFGGPAAGTDWSYESNLGVVFDRPI DSSSLSTFLSDLSSNYVRTDLMGSPAVVQDPTINGSATANAECYTPHANAAQTTFFFP ETVNGNTNPVYNRADDASHSYSLTLPSFTDVSSNTFSTPGSLSFTTVSDDLPGWLDNI PTAVAGTSSGELDVAWDYSNITPYTDTFDVYIADSTVYADPLTAVYSLADSGVIGDST TLTGLVSNRTYYVRVVPVNAAGSVGFSWAGSGAAK" sig_peptide 1810239..1810340 /locus_tag="Dhaf_1698" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.975 at residue 34" gene 1811673..1817423 /locus_tag="Dhaf_1699" /db_xref="GeneID:7258668" CDS 1811673..1817423 /locus_tag="Dhaf_1699" /inference="protein motif:PFAM:PF07550" /note="PFAM: NHL repeat containing protein; Fibronectin type III domain protein; putative cell wall binding repeat 2-containing protein; protein of unknown function DUF1533; KEGG: bsu:BSU35620 N-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49)" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1533" /protein_id="YP_002458181.1" /db_xref="GI:219667746" /db_xref="InterPro:IPR001258" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007253" /db_xref="InterPro:IPR011432" /db_xref="GeneID:7258668" /translation="MNSKWSPAKVYKRKAVAWFTLLIMVFSLWGTFPSARVYAAAAQP APLLSFPGIGVGEIATVAGTKKATGELGDNGPAKDATIRIPNGGLNFDDAGNLYIPTD NRIRVIPAQDGTLYGIDVKKNYIHTVVGNGTASSSGDGGPAGAATINGTVKTMFDPAG NLYLADKNSVRIIPAQHGPLWGIEHGADLVAGNIYTLAGTGSSTSSNWDDGADLNAVS IQPKDIAMDNAGNLYIINGARIGIIPARDYGAEEALYGIATAMEANKLYTVAGTSTGY SGDGGPATAAQLKTPNALAFDGAGNMYISDSGNRRIRKVDPQGIITTIAGKETNGDPT PGPAEDSKIPGTHWLGFHAGTLYLCGSGYIYTIDSSGQLAIVADKNTPTAPANDSLKS SVFTAHGLAWDDRGNLYIADGNSRILYMRLDPTPELKTLTISGAPALNYSGIPVTYDL NDLTIAGVGEDDQPFDVTGLDAEWSITNTANAYISDHTLTVSNAGDIEVQVSVNNVTS NKLTLPVTGVAVTPLQITSTVTDRIGKNIVLEFDGPVEDVSGLAAQFRAKVNGVEAAI AAVNLGDTPNQIILTLSQWNALANTMSTPQDVTLSYTIGGQEQVRSTDGRVLENFIDQ PVDNKLVQISNGVVDFAPVANEITYDSAAMTMKYRFVEPVDYDDVHLILYLTNGFFRS FDKNLNGTGADGSGKVKLLEKDTLKEVELPNIGTVVHSGGTGWLEMTDWYFEQIGGHS PLGLKLQSLALKPSTTYVIEIAKGFEFNNGSLTDIAYIFEFTTAAESLTKPYWNAGAA LSYDLGTMQAGAASVQPFGLMPVTTGSALSFDPAPVTTGSALSFGLMAATPGAALTLS WPDAQDNHGTAYNNLRYNIYQNGLLLATVGGTETTYEVSGLSPGTSYYFSVEAEDFAG NKSEVNLHATVTTPPDETQQPAPGLTPDSEDKLPGQAVDIRFTDNAAWRQAVTHVLLD GVSLTSAQYTLSPGVLHIREGVIDSSGSHSIVIKATGYVDTSVTQLTAGSGTGTPGGG ADIFPPTWPVGASLTGDKDKQVNANLKWTAARDNVGVTEYRIYLAGEDTPIKVVAGTV TSAYITDIGSGQVTVQVKAVDAAGNESTALSCIVGGQNVGSFTVTITALNTDPNNAVI QFDFTAGFMSPDNIANRLSDAHYLANLSQIKLYKKDTTTPIAYATENYHHYGDSGVSA DKRLRRLTLTYRGLEKDAVYVVEAGAGITANNGSTLGMDYTYEFTAGGTPAVVPNNPP ANQGTATNAPDNSEANKKILENLAKVTEEQRQAARLTEGHAEAGIGETSQQTLQTNDG VRLVIPPGALQGLAGLEQGAGPVRFKVEIGSVTEVPKAESASLMLDPVKFQREFSIEG INEGEAQFDVPITVSFPVTSADLPGGTQFEQLAIYWWNPDKKDWVKLGGVYDAAAGTI SITTYHFSTYAVMADPVDRPLRLAGSTRFDTANQVADYGWKGRADQAVLVNAYAYADA LAAVPLAYKLNAPILFTEKDRITPETLAQLQRLGVQKVVLAGGTGVISEAAEAELTGL YGEANVTRYGGQERYETAALLAGALGSTGQAIIVNTEQGRYTDTLAISGYAGYYGVPI LFTRSDGLPAATAKALDDGKVSRTIVVGGTGVIPQALADRLPEATRYGGKNAYETSVL VAEGLGLSTSQVYVVTALNFADALVAGNLSARTLSPIILVDKEIPRPTADFLLNHKGK ITNLIMVGGDGAVSSIQESAMRSAILAGAGSGAGDGTGDGSGANSRPAEMFDDFVPEA TVLKDSEDRIQYRYNNLIPYNRVELVWYFSFGFFSTFESNLQNYVKFYEKETKTAVDL PNVVTIPITGEGHMEITDWWFDRIGGHAPLGLTLKSRELKPDTTYVIEILAGFTFNNG NKTSKTYSFEFTTTSN" sig_peptide 1811673..1811792 /locus_tag="Dhaf_1699" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.893 at residue 40" gene 1817522..1818340 /locus_tag="Dhaf_1700" /db_xref="GeneID:7258669" CDS 1817522..1818340 /locus_tag="Dhaf_1700" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1949 ABC-type cobalt transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458182.1" /db_xref="GI:219667747" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258669" /translation="MIELIGAGKDYPTPQGGAVPAIKNINLQIREGEFLGIAGKNASG KTTLARLLNGLLLPTRGRVMVSGMDTRRRQYRMEIRRKVAMVFQNPENQIVNPVVEEE IAFGPENLNLPAGEVRRRVDEVLELLQLTEFRKHAPHLLSGGQKQRVAIASALAMQPD VLVLDEPTSMLDAWCRKDLMTYLLTLNRRRGMTTVLITHNMEDLAEADRLVVMDEGKI ISDTPPWEVFGRDSLPGMLRPPDISRLVRQLNERGGSLDPRITVRRELVDALCW" gene 1818331..1819209 /locus_tag="Dhaf_1701" /db_xref="GeneID:7258670" CDS 1818331..1819209 /locus_tag="Dhaf_1701" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1948 ABC-type transporter, ATPase component (cobalt transporters subfamily)" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458183.1" /db_xref="GI:219667748" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258670" /translation="MLVIEAREISYTYHPGTSHAKKALDGITLTVERGEFLSLVGANG SGKSTLIQQLNGLLLPEAGELMVLGRSVADKGYREQLWQKVGLVFQFPEQQLFEGTVY DELAYGLKNMGLAKGEIDRRVQEALLGVGIEPAGVSGQSPFSLSGGMRRRVAVASILA MEPEILVLDEPTAGLDPEGSSQILETVKRLQREKGITVLLVSHCLNELILFSDRIAVL EKGRIKAQGKVREVLSGTLGEAVILPEYLNVLTDLREKGWPVHCGQLTLEEAAAEIER VRNRLGNQGGACRWPE" gene 1819197..1819994 /locus_tag="Dhaf_1702" /db_xref="GeneID:7258671" CDS 1819197..1819994 /locus_tag="Dhaf_1702" /inference="protein motif:PFAM:PF02361" /note="PFAM: cobalt transport protein; KEGG: swo:Swol_1947 cobalt ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_002458184.1" /db_xref="GI:219667749" /db_xref="InterPro:IPR003339" /db_xref="GeneID:7258671" /translation="MARVKIGRYVPGDSPIHSLDPRTKLVGGFVIILAILIDDGWQVM ALGTLLMIVAISLSQIGWPSVLRSLKWLWLVFFLSFAVQVIATDGRPILSVGPLTLTW EGVYRGVITFLRLLIIYLNSTLLTMTTSPMRMAGGVEALFAPLRHVGLPVSQFAMMTS ISLRFVPTILEEGEMIIRAQKSRGAPFHSTNKLLRIKTGLAVLVPLIIGALQRATDLA AAMESRCYSGGSSFNRAKELRFQRIDGQAALFILFFCVLPLILFWGR" gene 1820137..1821072 /locus_tag="Dhaf_1703" /db_xref="GeneID:7258672" CDS 1820137..1821072 /locus_tag="Dhaf_1703" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: swo:Swol_2487 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458185.1" /db_xref="GI:219667750" /db_xref="GeneID:7258672" /translation="MANRYSNDRGYRRFFAVILLIMLLSAWPAAVYAAGGDGTGPLVN GVFKPLGLTSATLEDGTNAMDHQNVPLKPKFTLHFDKNVVYLIYWSRNKECFHLYDDE EKEVPISVTKIDDTVDFSKRQYIWVEPVEPLKPGTNYRLYVAPDLIAKNGGSLLASTT DGKGLTIRFKTAGEKAAAGPVTPVQTEPEQVNPVQTAPEQATPTMPESVVTEPAATEP GATEPESPVTESASADPDTVKPAAAESEQPAPAPETVQKSGDAHEPVQESGYTPSPQA IFAKYFAWVCLAIIGAWIIYEILRRRKNRDNRGAE" sig_peptide 1820137..1820238 /locus_tag="Dhaf_1703" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 34" gene 1821072..1821536 /locus_tag="Dhaf_1704" /db_xref="GeneID:7258673" CDS 1821072..1821536 /locus_tag="Dhaf_1704" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458186.1" /db_xref="GI:219667751" /db_xref="GeneID:7258673" /translation="MKKPSFAFRVAAGLMAIALIAGGSYLFEAKAKAQGSMTGQLVPV VQQDAIVAYVDSGAVGQLSEQEKAVKGEAAAERDDQAASLDFVLNSAGIAAYSRVEIG DIADPDSSLSLTRQEAAKVVLRPGTDGTVSLLDPEQGDKVLIKIVGKLYVAD" sig_peptide 1821072..1821152 /locus_tag="Dhaf_1704" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.359 at residue 27" gene 1821567..1822154 /locus_tag="Dhaf_1705" /db_xref="GeneID:7258674" CDS 1821567..1822154 /locus_tag="Dhaf_1705" /inference="similar to AA sequence:KEGG:Mlab_0258" /note="KEGG: mla:Mlab_0258 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458187.1" /db_xref="GI:219667752" /db_xref="GeneID:7258674" /translation="MKIEESVNSGEMDIMEESSPFLFRLGLADVIRLTMFGTLISVSR FLLQLPIGVPGHSSIYWMGLLVLGKGLIPKFGSGTIMGIVSGILAIVFGLGKEGPLLA FKCIVPGVLIDFLAILFLLKLGSVWVGAIIGALISFSKLLASIALGVILDIPMVFLAM GFSYAAILHLIFGAIGGVIASILIKRLKPRLVSWG" gene 1822204..1822938 /locus_tag="Dhaf_1706" /db_xref="GeneID:7258675" CDS 1822204..1822938 /locus_tag="Dhaf_1706" /inference="similar to AA sequence:KEGG:Swol_2485" /note="KEGG: swo:Swol_2485 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458188.1" /db_xref="GI:219667753" /db_xref="GeneID:7258675" /translation="MLTYIGIDDTDNLEVGATGETANHLIELIESRHWGCCQAVTRHQ LYLHPDIPYTSHNSSMCFVADMETGCIEALMQDISSFLKRESAPGSDPGFCLAIEEQI REKDALIDFGYEAKKRVVTKAEAYELAKKANIHLSEHGGTGLGVIGALAGVGLRMTNN DGRFQGKLKIKEPGMLVKVGEMIGRGTMDVVQSLDGYILSEDEEVRMGDKLKTVLLDG KRVFLVYRREGIREWETCLNNHLEKY" gene 1823006..1823230 /locus_tag="Dhaf_1707" /db_xref="GeneID:7258676" CDS 1823006..1823230 /locus_tag="Dhaf_1707" /inference="similar to AA sequence:KEGG:Swol_1470" /note="KEGG: swo:Swol_1470 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458189.1" /db_xref="GI:219667754" /db_xref="GeneID:7258676" /translation="MRDGGGMGIWIINEKGQWQYGGGKKDWARAAEIAGGCPCFAPDH EDEQTAEEEISCYNCRFRRWTESSFTCMKR" gene 1823258..1825183 /locus_tag="Dhaf_1708" /db_xref="GeneID:7258677" CDS 1823258..1825183 /locus_tag="Dhaf_1708" /EC_number="1.8.98.1" /inference="protein motif:PRIAM:1.8.98.1" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: hmo:HM1_0890 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="CoB--CoM heterodisulfide reductase" /protein_id="YP_002458190.1" /db_xref="GI:219667755" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258677" /translation="MMERIIFFILAAVSLGFFTVSIYEKLRVIRAGRAEERGDRPLRR WRYFFQQVVLHQKIRKHPLFGVAHIFIMWGFVFLIFSSIHMVSSRLFDRPFPAVFSTP GFVLVRDVFLVLVIGGVIASLTRRLLVKPEWLKNNAEAFIIQALILVIVISEWLYYGK SDEVLLKGISWWVHFLAIFAFFFLIPLSKHLHIVFAPFNTYWHTLAPQGALPPVHCGE NGSGRYGVGKPEEFTWKQLFDAFSCAKCGRCNGSCPAYQCGEELKPKRMNGRLRKYME KRSAVFQVSKQDKEKQSKKGHKKGQNKAKGQGRIAGGIIEEGYLWSCTTCGACMEVCP VSCEHLTKIIDIRRFFVSRDKELPPEVTEVLAGIAEQGIPSGSKRSEDVDYTWAREMG IPTWAEHPGAEYLYFVGCAPAFDLLARRTAVTFAGILQRAGVDFAILGAEEWCCGETA RRLGDERLFQQTVGRNITLWREKGIKKIVTACPHCFNTLQNEYAQFGGSYEVIPHTAL LAELVARGKIKPSQGPGLVVAYHDPCYLGRYNGFYEEQRELLRALPGIRLIEMPRHKE DSFCCGGGGGRFWVQKDKENVIGQHRWQEALDTGADLIATACPYCRITFERESGRQEA EQKMGIADIAEILSARI" gene complement(1825321..1825902) /locus_tag="Dhaf_1709" /db_xref="GeneID:7258678" CDS complement(1825321..1825902) /locus_tag="Dhaf_1709" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: bwe:BcerKBAB4_2893 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458191.1" /db_xref="GI:219667756" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258678" /translation="MNKHDDLRVIKTRKLIKEAFYEAVHEKGFDKITVSDIAGKAMIN RSTFYLHYKDKFDLLRSLEDEVLEDIEEISLSVTRESIQASRLTGAPFPHIVKLLTYV QENSEFFQLTVRDNTYLSFYNKMGDLISKRTFEVIFPQLTLDGLFSKYLKHIVVAIFS SIINQWIKNGMQETKEDIASLITKIALSFLAIN" gene 1826090..1830355 /locus_tag="Dhaf_1710" /db_xref="GeneID:7258679" CDS 1826090..1830355 /locus_tag="Dhaf_1710" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: cbf:CLI_3309 putative CoA-substrate-specific enzyme activase" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002458192.1" /db_xref="GI:219667757" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7258679" /translation="MNTIIGQEDKNEGLKLGIDIGSTTVKIALLNPRGELIFSRYERH MSSVFAKVGELIADLEGDFPGLQVTACITGSGGLLLSRLIDLPFEQEVIACSKAVEVF IPKTDVAIELGGEDAKITFYKDAVEQRMNGTCAGGTGAFIDQMAVLLNTDAAGLNRFA KEHTVIYPIAARCGVFAKTDIQPLINEGVPVSDLAASIFQAVVNQTISGLACGRVIRG NVAFLGGPLSFLSELRGRFTETLGLKEEEVIFPEHSQYFVAIGAALLSEGQNRIGVAE ILDRIAAAGASVSTQSRHLPPLFASGEELAEFERRHRRHAAVRGDIAQAHGPVYLGID AGSTTTKGALIDKDKKLLYTFYKGNEGNPVGTVRMMLKELFASLPRGAYIANSVVTGY GEGLIQAGFSVDYGEIETIAHYKAAEEFLPSVEFILDIGGQDMKCIRVKDGAIHHIIL NEACSSGCGSFIETYAKSVNMSVEKFAEEGLLARSPVDLGTRCTVFMNSKVKQSQKEG ATLGDISAGLSYSVIKNALYKVIKLRDPRDAGGKVVVQGGTFLNNAVLRSIESVLGRQ VIRPDIAGLMGAFGAALIALEKAAPESGSGLLSEQMLAEFQAGSSNSRCRGCQNNCLL TINSFANGQKFVTGNRCEKGSGGVKQGPQVPNLYARKYARLFAYQPLPREVAPRGVIG IPRVLNMYENYPFWFTFFTELGYSVLLSPASSKTLYELGMDTITSDTACYPAKLVHGH IKWLADKGVPVIFYPAINYERREDPGANNHYNCPIVATYPEVIGGNMQPHFAEKGITF LHPFLPYDADEKLARRLADELAGYGVQPEEVGAALRAARREDERFKKDIAEMGRKALA VIKREGLQAVVLAGRPYHLDPEINHGMDTLITSLGMAVLTEDSVAGGVTLSGPLRVLD QWMYHSRLYKAAEFVGRHEDIELVQLNSFGCGLDAVTTDQVEEILSCKNKLYTLLKID EGANLGAARIRIRSLKAAAEERRRGGVHPVDKPYTFERRYFTKEMKGRYTILLPQMSP IHFNLVEAAINSFGYNAKLLPEADSHAVDEGLKYINNDACYPTIMTLGQVISYLKSGE CNLDKTAIFMSQTGGGCRASNYIGMLRKALQNLGMEQVPVISFSHAGLETNSGFRISS GLLVKLVLGVLLGDVLMRVLYATRPYERDKGAADDLAARWTRRMVGAMPRLGVGGYRR LVKEMIADFDRIEVNHEIKPKVGVVGEILVKYHPNANNQLVDIIEAEGGEAVVLDLMD FFLADMYSKGFNYEFLTGTKQGMHLGRLGIRLIEWLRKPARAALQNSRRFRQPLPIEE IARKAETLVSLGNQCGEGWLLTGEMVELVDSGVPNIVCLQPFACLPNHVTGKGMIGAL RRSNPLANIVPIDYDPGASDVNQFNRIKLMMAIARKNLAQASG" gene complement(1830422..1830913) /locus_tag="Dhaf_1711" /db_xref="GeneID:7258680" CDS complement(1830422..1830913) /locus_tag="Dhaf_1711" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: mmx:MmarC6_0403 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458193.1" /db_xref="GI:219667758" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7258680" /translation="MSITVREFTPEDIPAMLPIWNEVVATGIAFPQMEPLDEKTGLEF FGGQSFTGVAIEEATGNMVGLYILHPNNVGRCGHICNASYAVKSEERGKRIGEILVKH CLAKAKEIGFQILQFNAVVSTNTAALQLYAKLGFVQLGVIPGGFLMKDGSYEDIIPHY YLL" gene 1831309..1833009 /locus_tag="Dhaf_1712" /db_xref="GeneID:7258681" CDS 1831309..1833009 /locus_tag="Dhaf_1712" /EC_number="3.5.4.2" /inference="protein motif:TFAM:TIGR01178" /note="KEGG: cdf:CD1820 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase" /codon_start=1 /transl_table=11 /product="adenine deaminase" /protein_id="YP_002458194.1" /db_xref="GI:219667759" /db_xref="InterPro:IPR006679" /db_xref="InterPro:IPR006680" /db_xref="GeneID:7258681" /translation="MNDRNLKKLAPKSLGREKAQLVLKNAQVINVFSEEILVRDVAVE DGVIVGVGQYQGREEVDLSGKYLCPGFIDAHLHLESTLVAPPELIHSALQWGTTTFII DPHEVVNVAGEEGLDYMLEQTEGLAANVFLMLPSCVPAVPFEENGGVFSAEKMEPYLA NPRVLGLGEVMDYVSVIEAEEGMVKKLRLFRERIKDGHAPYLQDKQLAAYALAGIKTD HECIDYAYALEEVRNGMQVLIREGSGARNLEAIVRGIRDNSMDTGNFSFCTDDKHIND IQREGHISYNIKKSIALGIPPLKAIKMATINTARCYNLTKLGAVAPGYQADFVILDSL EEVAVHAVYHKGKKVDREKKIEIKPCPEQLRRTVHLPNLSADDLKLAVPDSPSSLIQM IEGQITTKHVRDVLPAQDGCFVPNAQYNKVVVVERHKGTGHFAVAPVLGFNLRQGAIA TSVSHDSHNVVAIGDNDESILLALQELQRVQGGYTMIRGQRVLATLPLPIMGLISDAG YQAVENTLNQMIGYAHEMGVPAHTHPFIALSFIALPVIPEIRITTRGLYDVVDQEFIR" gene complement(1833094..1835202) /locus_tag="Dhaf_1713" /db_xref="GeneID:7258682" CDS complement(1833094..1835202) /locus_tag="Dhaf_1713" /inference="protein motif:PFAM:PF04205" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458195.1" /db_xref="GI:219667760" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7258682" /translation="MSTTISRRDFFKTAALGAAGIGLMGLTGCDTSVVNETPGADPTS PEGSAALPDPFTLEEFKDSLVQLDPIASFVGEVTVDIVVVGAGAAGVPAAVTAAEEGN SVAVLQKQSTVVSQGNCGSGLIIDKSDTEGLLRYVQQTNSLNSWRSDPELLKAYVMHS GEAVQWVYDRARLTGTSAGKPNDKGLFAYLDTSQDFTGEWTDHRYSKFDYGTAKAHMY APWMGPKPNNIGTYLSYVLDEAAQQYSDRMKIYYSTPGVQLIVDAGRVKGVVGKLADG TYVKFNANKAVILATGDYQNNSAMVKHWCPDVENFDKKQFQKTGDGHLMAVTAGAVME KLGHTKMLHDFDAGLMYEEPFLSVNMKGKRFCNEFIGFVYMNDMMLHQDMYKGGKNYD VPEKGSLGWYCQIYDSDYMSHEAFESLVPPAVMEKYMPGITDEHYAASHNGAARTGVF PHLIDTWRADSLDELADKLGIEDKQAFLATIERYNTLCSKGADEDFGKDKKWMNAIKK PPFYGIRRHLRVSALCSGVYINANGQTLDENKTPIEGLYCAGNLGGQFYGAADYPFHA TGLSIGRCFTFGRLAAKHAASLSGGSGKIAESGTTTVAASSVGSSGNWKDGTYQGKGS GVFGDDIKVSVTIAGGKITAITVDEQKETETIGGVALPTYIEAVIANQSTGIDAVSGA TMTLKGFTDAVNDALAKASA" sig_peptide complement(1833094..1833180) /locus_tag="Dhaf_1713" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.823) with cleavage site probability 0.557 at residue 29" gene 1835576..1836034 /locus_tag="Dhaf_1714" /db_xref="GeneID:7258683" CDS 1835576..1836034 /locus_tag="Dhaf_1714" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbl:CLK_1500 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458196.1" /db_xref="GI:219667761" /db_xref="GeneID:7258683" /translation="MDVCRLSGIPRSTFYSYFCDIYSVPQWIWDDMMEHSLYKIGDGL TWDEGHRIMFENILQHKILFSKIYWENDNNSILEYGYRGGYSAVKRNVAVRKHHHWTE TELLELDYTIRALASLTTKWGRDGMIVPVETVVHIFNTHVPPFLKELCDT" gene 1836305..1838506 /locus_tag="Dhaf_1715" /db_xref="GeneID:7258684" CDS 1836305..1838506 /locus_tag="Dhaf_1715" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: neq:NEQ542 DNA topoisomerase VI subunit A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458197.1" /db_xref="GI:219667762" /db_xref="InterPro:IPR002815" /db_xref="GeneID:7258684" /translation="MLFEREDWKLFRNMETLTQKAGVPKSKLSMLVCKELADNALDVC GHCEIGFEDGFFYVRDQGPGLDPALFSINRPLRSSKYLRLPTRGALGNGLRVVAGAVA ASGGELYVSTRGRRYRIHFQPDGTARPESLGDAQEMGTMISFQLGRLPINSSWAQTAV RYAGGESYRGKTSPWWYTSENFFELFQAFGGTVRELIQQFDGCTGGKGGKIAALYPKT PAGDLTFAETEGLLGEMRTAVKNVRPARLGRIGEREEWCSYSKGEGVFYVESAKGEHR AEIPFAVEVYAEASSSPDITVLLNKSPITGEVSLYDREKHELGLLGCGLYLSFRSKPV RLLVNIITPYMPLVTDGKEPDLSVVEDVIRETAARAVRRAGKVLTELPVGKKRSHKEI VADCLERAIAKASGNGEYRFSLRQLYYAVRPYVIRETGREPDYNYFCRDLVGGYEARH GDIPLMYRDERGTLYHPHRGEDISIGTIAVENYRKPLWTFNKVLYIEKEGFFNVLKER KIPEKYDMALLTSKGYASRAVRDLLDALGEHAEEEIIFFCIHDADAYGTTIYETLQNE TGARPGRKVKIINLGLEPEEAVAMELEVEKVEKSGRRRGVASYIEPQWESWLQGNRVE LNAMSTPQFLAWLEEKLQRYDKGKVIPPESVLRENLEQSLEAGISRVIAQEILEQHNH GGRVAEAVRQVKADWEERLTGLEERVREEPVSHWQDIVEDLSETMLKIRPF" gene 1838739..1840286 /locus_tag="Dhaf_1716" /db_xref="GeneID:7258685" CDS 1838739..1840286 /locus_tag="Dhaf_1716" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002458198.1" /db_xref="GI:219667763" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7258685" /translation="MGRNVQYITFSIVYGIMIFIWTFVYLNKSKDKVNESFLGFLTVV ILWMVLSISIAGDDISTLGLVLKTIYFYSMLNMAVAFLLFIYRFIGRKLDGLFYMSVT INTLTILARYLFPIDYADPTFWRLTDPVVAPVMSALFSLPAVFALILIVRHYKMTQDG KLRTQLRFVLSGTGLACLISIVSEYILPAYFGLESNLSLMYFAILIFIVYIFRSIIKF KFLNIQSDYVYRRLFLNSGEGILIINRHLTIVSINNLAKEILENKAIEPGDKITQLIK TYDFDTNYKQQEITIVVESGEKYLTMTQHPIDPDDRDSTKLLVVNDITSAKLKLKQEK ELLMKRSSIDPQTGFFNKQYMLDYDKAESPELGNTALLFIDIDNFKSINDLYGHLAGD SILKSVAECIRCSIGSEAQVIRFGGDEFVVIFANPGKDEAYLAAEAIRTKVNALILPE HYGDLTLSLSIGLAEGRVPVRELITQADEAMYSAKSQGKNRTMKSLVRDVAVEKGGRQ QSQLLEP" gene complement(1840228..1841349) /locus_tag="Dhaf_1717" /db_xref="GeneID:7258686" CDS complement(1840228..1841349) /locus_tag="Dhaf_1717" /inference="protein motif:PFAM:PF07907" /note="PFAM: YibE/F family protein; KEGG: amt:Amet_0543 YibE/F family protein" /codon_start=1 /transl_table=11 /product="YibE/F family protein" /protein_id="YP_002458199.1" /db_xref="GI:219667764" /db_xref="InterPro:IPR012507" /db_xref="GeneID:7258686" /translation="MKKNLYKYIVLGIIYIAFSFISSSHICLAAAEISSSPSEKQEKM VRARIISIDLQKHQNSAQSVELITLEGAHKQQRFVTSFYATGIFYGITLRENDEVFVT LFLNGDGAVEKVSITEIARDKYMTYLLLGFIGLLVLIGGSKGIRAILSLLATYFAIIY VLFPLILQGYDPTYITIGLCSVIAIFTLLLVGGHNKKTFAALIGTLCGLCAAAYLTIT IGDLAHFTGAIDEDSYLLEYLPQDSIFSYQGLFFAGIIIGSLGAVMDVSMSIASAVNE LKEKTYSLSSFQLIKAGMNVGKDTIGTMANTLILAYTGGSIYMLLLLSAENISLHQLI NREIIASEILRSMAGSIGLTITVPITAIVAGLLFQRQHP" sig_peptide complement(1840228..1840317) /locus_tag="Dhaf_1717" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.961 at residue 30" gene complement(1841522..1842379) /locus_tag="Dhaf_1718" /db_xref="GeneID:7258687" CDS complement(1841522..1842379) /locus_tag="Dhaf_1718" /inference="protein motif:SMART:SM00382" /note="SMART: AAA ATPase; KEGG: cbe:Cbei_2369 AAA ATPase" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_002458200.1" /db_xref="GI:219667765" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7258687" /translation="MIYLEQFTFPDGDRESIFFQDKVKRTCYDSYYPFQVLPGRGLER LDFDLITILYGGNGSGKSTLLNIIAEKTEIPRDAIYNKSNFFPDYVAMCEMQLKVFLP EHSRIITSDDVFDYMLNIRSLNEGIDRKREQLFDDYLEAKYSRFQLKSLADYEELKRV NHARFNSQSRFVRNELMDNAREYSNGENAFRYFTEKIDEKGLYLLDEPENSLSPKRQL ELVQFIEDSARFWQCQFIIATHSPFLLALRGAKIYNLDETPVAVKRWTELENVRIYYD FFKKREREF" gene 1842661..1844214 /locus_tag="Dhaf_1719" /db_xref="GeneID:7258688" CDS 1842661..1844214 /locus_tag="Dhaf_1719" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pth:PTH_0037 membrane-fusion protein" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_002458201.1" /db_xref="GI:219667766" /db_xref="InterPro:IPR003997" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7258688" /translation="MKKKLVITLVLGVVVLGGGGFWAYQHFQEKPQQTSLMTTTVKKG DIIQEITATGTVMYPEEVPLAFEQNGKVREIYVKVGDAVTAGQALAQMDTETLQQEVT ESMASLKEAELNWQQQKVEAEGTLVKARQALRTAEQNADPAYLQNQLAIAEQSLLIAG NNLAASQLSGDESSILQAKTALTQAQSDLINVQNTYNGGAEQAVDSAKADLEIAEVKL ARLQERTSLAQAETAVVKAQENLAKATLVAPSDGVIIEIPVKEGQTLSDTTTVLNLAT GGELLIVESYVSQDEVTKIKTGQKANISLDSAPEDYMSATVTQVALKGTTTQNVTTFQ VTMQMDEVTDAIRPGMNANVGIIIAEAKDVLIVPSSAVQTQGDQKGVLLLSNPPSSGS PSPEGQMQGRPSQREQVPGEQAEAQKEQAQGEGAQAGAAEPRNSERSAPQGTAQFVPV ETGLDDGTNVEIKSGLTEGQRIVAGTRTSSSGSNTNANSNRNMNSPAGVMPGMGGGGG FGGSARPMR" sig_peptide 1842661..1842714 /locus_tag="Dhaf_1719" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.624) with cleavage site probability 0.331 at residue 18" gene 1844227..1844955 /locus_tag="Dhaf_1720" /db_xref="GeneID:7258689" CDS 1844227..1844955 /locus_tag="Dhaf_1720" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH976 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458202.1" /db_xref="GI:219667767" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258689" /translation="MIQLKGIKKIYTTGDIQVHALRGVDFHIKAGEFVSIMGPSGSGK STTMNVLGCLDIPTEGEYLLDGVDVAKATAKELAKIRNRKIGFVFQGFNLLPRTTALE NVELPMLYAGINAKERHQRAVEALESVGLGDRVYHRPKELSGGQQQRVAIARSLVCRP AIILADEPTGNLDSKASEEVMAIFQRLHREGNTIVLVTHEPDIAEYTQRIIRFRDGEI EKDEAVENSRVANAPLDREKGGAV" gene 1844952..1846172 /locus_tag="Dhaf_1721" /db_xref="GeneID:7258690" CDS 1844952..1846172 /locus_tag="Dhaf_1721" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: hmo:HM1_3093 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458203.1" /db_xref="GI:219667768" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258690" /translation="MNFLELMKVSLRALYANKLRSALTMLGIIIGVFAVIIMVAIANG ATQSVTANIQGLGSNLLIVSAGQSSFGGVRGGAGSANTLTMEDVAKVRAAGSAVKAVA PVVNTNAQVVYGTGNTSTSVMGTTAEYADVRSIKIAQGRFITEEDITKSARVAVVGPT VVENLFGDANTDIIGKNIKLNNIPYQVVGVTVSQGSSGMTNNDDMIYAPISSVQSRLV GSKSVRQIYIEAESAQLMTEAQDQVTYALQLAHKIQSGQENDFTITSQAEVLESMEEI SQTMTLLLGGIAGISLLVGGIGVMNIMLVSVTERTREIGIRKAIGAGEGDILFQFLIE SVVLSLIGGMLGILLGWGGSLVASRLFGVTTSVSLSSVGIAFGFSALIGIVFGVVPAK KAAAMNPIEALRYE" sig_peptide 1844952..1845086 /locus_tag="Dhaf_1721" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.635 at residue 45" gene 1846297..1847889 /locus_tag="Dhaf_1722" /db_xref="GeneID:7258691" CDS 1846297..1847889 /locus_tag="Dhaf_1722" /inference="protein motif:PFAM:PF04122" /note="PFAM: putative cell wall binding repeat 2-containing protein; KEGG: ckl:CKL_2876 predicted cell wall binding protein" /codon_start=1 /transl_table=11 /product="putative cell wall binding repeat 2-containing protein" /protein_id="YP_002458204.1" /db_xref="GI:219667769" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7258691" /translation="MVAKKKKSLALAVCLFVLLVTLIPGTVRAADDDVDWNKGVLAYL VVDAGDAQTVIGSADTIHFRLYDLNGDPYSGSVSGYITDPDDEVTYVSISGGQGSYSI ANFNFDKLGSYSIFLWDQYDNYAGGTVKVVEPVITLTGKPVVHSESKVSVKIADPDGR VLARQSLTVDGTEVGAGSSNYTTLFDGTFTFTITPKKTGTVSIIYGGHVVGTVEVVPA YTPGSRIGAQAADNMQLSVEVAQSGWAKASTVILTRDDVVADAMVAVPLSKKYDAPIL MTSSQRLSNEVLHEILNLGAETVYMIGGTGAISAEIESELQTFGITTQRLAGANRYDT AAQIAELVGPSDRVYLAYGYGEPDAIAVSSFAAAQGASILLTDTHSLPEETQNRLKQI SPGEVVLLGGTGIISSAVETQLSGQYAVKRWGGADRYGTQQIIFQNLLTHEIPVYIAS SLVSPQDAVQGKPKGDALLAAALAAKAGGCVMSVPQDSLPAAVSYSLLYNKGYISEAT VVGNSESVQATLEYQIHELVKH" sig_peptide 1846297..1846386 /locus_tag="Dhaf_1722" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 30" gene complement(1847890..1849263) /locus_tag="Dhaf_1723" /db_xref="GeneID:7258692" CDS complement(1847890..1849263) /locus_tag="Dhaf_1723" /EC_number="4.1.99.2" /inference="protein motif:TFAM:TIGR02618" /note="catalyzes the formation of phenol and pyruvate from tyrosine" /codon_start=1 /transl_table=11 /product="tyrosine phenol-lyase" /protein_id="YP_002458205.1" /db_xref="GI:219667770" /db_xref="InterPro:IPR001597" /db_xref="InterPro:IPR011166" /db_xref="InterPro:IPR013441" /db_xref="GeneID:7258692" /translation="MKTYPAEPFRIKVVEPVRSMKRAEREEAMKEAGYNTFLLKSEDV YIDLLTDSGTTAMSDKQWAGMMIGDEAYAGSRNFLHLDRVVKEYYGFKHLVPTHQGRG AENLLSRLMIKPGDYVPGNMYFTTTRYHQEANGATFRDIIIDEAHDSANRHPFKGNID LRKLQTLIDEVGAEKIPYICLAVTVNLAGGQPVSLENMKAVHELAHQHGIKVFFDATR CVENAYFIKKREADYQDKTIKEILLEMMSYADGATMSGKKDCMVNIGGFLAMNDDELF LRAKELVVVFEGMPSYGGMAGRDMEAMAIGITESVDYAYIEHRVEQVAYLADQLLAAG VPIVEPVGGHAVFLDARRFLPHLEQDHFPAQALAAQLYIESGVRSMERGIISAGRDLK TGENRHPKLELVRLTIPRRVYTYAHMDIVARAVIELYQQRETIKGLKFVYEPEMLRFF TARFEHI" gene 1849544..1850236 /locus_tag="Dhaf_1724" /db_xref="GeneID:7258693" CDS 1849544..1850236 /locus_tag="Dhaf_1724" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_0463 Crp/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002458206.1" /db_xref="GI:219667771" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7258693" /translation="MNDGSNDFELLGSPWICENPHANWTAPAAHGMFKRFKKKEIIIH SGDQIDYIYYLHKGRIKTVAQSPSGSQKILWYIEAGSIFGETPFFNRKPCDYNFFAVT DCEIYIYPMEVIMQEIIPKFPDLTLSIIKTLSRKVHILSTQVEDCVFNKPLVRVAKLI YLLHQGRILEDKRGSSSIPLTQEDIANTLGMHRVTVNQALKHLKEIQALKEHTHLIII HDPEKLKEVMEA" gene 1850486..1851934 /locus_tag="Dhaf_1725" /db_xref="GeneID:7258694" CDS 1850486..1851934 /locus_tag="Dhaf_1725" /inference="protein motif:PFAM:PF03553" /note="PFAM: Na+/H+ antiporter NhaC; KEGG: dvl:Dvul_0273 Na+/H+ antiporter NhaC" /codon_start=1 /transl_table=11 /product="Na+/H+ antiporter NhaC" /protein_id="YP_002458207.1" /db_xref="GI:219667772" /db_xref="InterPro:IPR004770" /db_xref="GeneID:7258694" /translation="MDNDGSRKKPGLMLAVVAFIIPVLVILWGVVFAKLPALLPIIIA TTIACLIGKLWGYSWDEMQKGMFDSIYRVHIAILILIAVGMLIGVWILAGTIPTIIYW GLKLISPSGYLVTAFLLCIVASTATGSSFGTMGTVGIALLGVGQALGYPLPLVVGAIV SGAYFGDKMSPVSDSTNIASSVCEVNLFSHIGSMMWTTIPAAVVTAVIYIIMGINHSG GSDLGADVTILLQSLETTFNLSLWTLVPPVLLILLAYRRVPAVPLLMVSVVLGAIVAA LFQGQSMIAIINSTIKGYVGSSGVAQLDSLLTRGGINSITGTVMLLISAVSFGGVLEK IGVLGVIVDASLKWATTTGRLIVSVIFASYIMLIGTGSQAIAMIIPARAYAPVFKERG LHLRVLSRTVEDSGCIASPLLPWSVHAFYILGVLGVSAYEYAPYAFMCWIVPIFSIIY GYTGFAIWRADNSPIRKPAPEVKDSGNDSFLN" sig_peptide 1850486..1850587 /locus_tag="Dhaf_1725" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.600) with cleavage site probability 0.590 at residue 34" gene 1852048..1853532 /locus_tag="Dhaf_1726" /db_xref="GeneID:7258695" CDS 1852048..1853532 /locus_tag="Dhaf_1726" /inference="similar to AA sequence:KEGG:Dred_0361" /note="KEGG: drm:Dred_0361 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458208.1" /db_xref="GI:219667773" /db_xref="GeneID:7258695" /translation="MGQPFVHPTGVTIYNPEKCFNGYTIMQAPGLGCVLIDMNGNVVR VFKDLHGFPNKLLPGGYVMGSRGRRNGKFGYQDQIDLVQVDWDGQVVWEFAKKEYIED EGEKPQWMARQHHDYQREGNPVGYYVPGMECKTNSGNTLILSHQNCYHKKISDKQLLD DVIIEVDWDGNIVWEWHAVDHFHEYGFSAAAKLALYRNPNMHEAGGGMGDWMHINSAS VLGPNKWYDKGDERFHPDNIIWDAREANIMAIISKETGKVVWKMGPDFAQDKKLRKIG QIIGQHHVHMIPQGLPGAGNILIFDNGGWAGYGAPNNVSKDGTKVDMADRSRVLELNP VTMEVVWQLKASELMDYGQPGISDYRFYSPLTSAAQRLPNGNTLITEGCGGRFFEVTR MKEVVWEFISPFNANPATIYYRAYRYPYSYVPQLPEPKETPVPMLDIRKFRVPGAASC EVQHVVGVEGTIGYPAMQQACVAAADQDLSLKDDDDDDLFSRSF" gene 1853872..1855320 /locus_tag="Dhaf_1727" /db_xref="GeneID:7258696" CDS 1853872..1855320 /locus_tag="Dhaf_1727" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: bha:BH3944 transcriptional activator of arginine utilization operons; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458209.1" /db_xref="GI:219667774" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7258696" /translation="MKTRLKEIIAQYPFFFDILNTIDASVYLCDNNGRLLYVNKAAER LDGYTNEELYGRTVTEIYGLDEETSPMLRALTSEKPLEDISFRYDVNGREIYQICNAR PIFLDGKKFGAYTIQKDVTHLMEVIERNIRFQKEMFSPISDSEGFGIDSLIGEHPLFK ECKKMAIRAAKSDSPVLLTGATGSGKELFARCIHQNSDRSKGPFLAINCAAIPETLLE SILFGTSKGIYTGALERKGLFEQAEGGTLFLDEINSMPLVSQSKLLRVLEEKEIAHLG SNERIKVDVRIISSSNTPPQEAISSKQIREDIFYRLAVVNIMIPSLAERKSDIFLLAN HFISVFNERFQKHILALDDEVLGFFLKFPWPGNVRQLKHCIESAMNFVTDEDLRISKD HLPVYLFSIDNAANHGAQGSSFPKEPVDRNRESKPPEPESTGVFSAIVQKEKEQIIKA LMENQGNVSKTAKQLGMHRQSLIYRIKKYKIT" gene 1855566..1856972 /locus_tag="Dhaf_1728" /db_xref="GeneID:7258697" CDS 1855566..1856972 /locus_tag="Dhaf_1728" /inference="protein motif:PFAM:PF06253" /note="PFAM: trimethylamine methyltransferase; KEGG: smd:Smed_1775 trimethylamine methyltransferase" /codon_start=1 /transl_table=11 /product="trimethylamine methyltransferase" /protein_id="YP_002458210.1" /db_xref="GI:219667775" /db_xref="InterPro:IPR010426" /db_xref="GeneID:7258697" /translation="MQRYQILSQNEIEQIHETSLRILEEVGVIFSYAPAREILAKGGA KVDGQKVYFPRAMVERERKKAPSSFTLYARNPEKNVLINTENTAYVGPYGAPFVMDMD NGRRLAKLQDFINLCKLEHKMNNIDIMSHIPCEPQDVDPEMRSLEMVYQTLKHSDKPL MATVLGYEMTKKNIEMASIVFGGLEAIKDKPIVVGIPCTLTPLSYDDKMAGAIIAYAE HRQPQLVNSLCIAGATTPVTVAGTVALQNAEVLAGIVLSQLVSEGTPIIYSASSSNAE MSNGSLAIGTPEDAVFSLVNGQLAKFYNLPCRISGALSDSKCADVQAAYESMLTLSMA QMAGGNFILHGAGIIDTYNTVSLEKMMIDDEIIGMVRRIDQGVVVNEDTLAFDVTKEV GPQGQFLTHVHTFTHFRKEFYRPVLSDRNNPTQWEADGALTAEKRANIRWKKLIDDYV EPVLDKDVDAALRKYKEK" gene 1857036..1857668 /locus_tag="Dhaf_1729" /db_xref="GeneID:7258698" CDS 1857036..1857668 /locus_tag="Dhaf_1729" /EC_number="2.1.1.13" /inference="protein motif:PRIAM:2.1.1.13" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_1208 5-methyltetrahydrofolate--homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="Methionine synthase" /protein_id="YP_002458211.1" /db_xref="GI:219667776" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258698" /translation="MSDLTKLADTVFRGDFGNAGQITRELIDSGVEPLTIINQGLIAG MDIVAPKFKAGEMFVPEVMMAARAMAVGMEVVKPLIQDADIPSKGTVLIGTVAGDLHD IGKNLVIMILESGGFKVVDLGVDVSVEKFVAAAKQYNPQVIGMSALLTTTMTAMKDTI DALTEAGLRQSLKVIVGGAPLSQEFASQIGADGYAADAMAAKELCEKLAG" gene 1857699..1859129 /locus_tag="Dhaf_1730" /db_xref="GeneID:7258699" CDS 1857699..1859129 /locus_tag="Dhaf_1730" /inference="protein motif:PFAM:PF06253" /note="PFAM: trimethylamine methyltransferase; KEGG: mlo:mlr8280 trimethylamine methyltransferase MttB" /codon_start=1 /transl_table=11 /product="trimethylamine methyltransferase" /protein_id="YP_002458212.1" /db_xref="GI:219667777" /db_xref="InterPro:IPR010426" /db_xref="GeneID:7258699" /translation="MMALETMDSDLKQIHEASMIILEQTGMRFNHPKVVEMLKEKGIK VEGSTAFFTRTQLMEWVSKAPRQFKMYARNSKYDFEVGGDHVELLPGYGSPFVCSADG KKRDALMSDYVKFLKLFHQSEHHKANGGVVVQPNDIAKSQIVAMLYAAIVHSDKVLVA GSGSAEDTEKLMDLLAIVFGGKEALMEKPRCLTIVNTNSPLQLDTNMLDTMMVFNKYK QPIVIAACAMAGTTAPVTLASTIAITNAEVLAGIAVAQMINPGTPVIYGSQSTTSDMK TGSIACGSPEGALCYQYAARLAKAYGLPCRGGGAISDAKALSVQAGYESMLTFLATYT AKTNVIIHSAGIMDSYNAMSYEKFIVDLEIIGMVKRYVAGLAVNEETLALDVIQEVGV AGEFLSSVHTMQHCRKEPFLPDISLRGSVAGDPGESLLNNVQKKEHKMLESYCKPEMP ADIKDKLTEYVLGCGFNEQLIKELQA" gene 1859233..1860759 /locus_tag="Dhaf_1731" /db_xref="GeneID:7258700" CDS 1859233..1860759 /locus_tag="Dhaf_1731" /inference="protein motif:PFAM:PF02028" /note="catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism" /codon_start=1 /transl_table=11 /product="L-carnitine/gamma-butyrobetaine antiporter" /protein_id="YP_002458213.1" /db_xref="GI:219667778" /db_xref="InterPro:IPR000060" /db_xref="GeneID:7258700" /translation="MNEGQGSIKIDKKIFFPPLVLVSLICAYIIKYPEAGSATINKVF AFVTGDLGWAYELFVFANLGIILYFIFGKFANKRLGDEKPEFGTLTWLGMLFSAGTTG TILYWSSMEFYFFLTAPPFGAEPLSPEAWKYSLAFSFFDWGISAYGLYVAVGVVFGYF FYVLKKDVFRPSTACEGLLGERVHGPLGKVIDIFYMIGIIAGVATSIGLGTPIISEIF TKLSGQPRTLAVDAVIILIWTVIIAISVYGGLEKGIARLSNFRIYLGYAILALVAILG PTAFMLNNTFDALGVYLNDFLRMSFYTDAHLGTGFPQNWPIFFFAWFLAFALSTGIYL ARISKGRTVREFTLGATFSGVLCAFLYFAVLGNYSIDAFVNNKVDIGRIVAESGGFRA AVEIWSTLPFSSVFLVAILILVFISTATSINSIAYTLAMVSSNKLEKGQDPAKWNRLS WAIIIGGLSLTLMFLGGLTPLQTAATAGSLPTMIIMAIILIGFFKTAGKSWGEESDKQ" gene 1860832..1861464 /locus_tag="Dhaf_1732" /db_xref="GeneID:7258701" CDS 1860832..1861464 /locus_tag="Dhaf_1732" /EC_number="2.1.1.13" /inference="protein motif:PRIAM:2.1.1.13" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_1208 5-methyltetrahydrofolate--homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="Methionine synthase" /protein_id="YP_002458214.1" /db_xref="GI:219667779" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258701" /translation="MSDLTKLADTVFRGDFGSAGQITKELIDSGVEPLTIINQGLIAG MDIVAPKFKAGEMFVPEVMMAARAMAVGMEVVKPLIQDADIPSKGTVLIGTVAGDLHD IGKNLVIMILESGGFKVVDLGVDVSVEKFVAAAKQYNPQVIGMSALLTTTMTAMKDTI DALTEAGLRKNLKVIVGGAPLSQEFASQIGADGYAADAMAAKELCEKLAV" gene 1861607..1862407 /locus_tag="Dhaf_1733" /db_xref="GeneID:7258702" CDS 1861607..1862407 /locus_tag="Dhaf_1733" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002458215.1" /db_xref="GI:219667780" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7258702" /translation="MLIIGELINTSRKAIKEAVEKKDAEYIKQVAREQLAAGANYIDV NCGTMVNNEAEVMEWLVNTVQEAVEAPLSIDSPDPKAIEAGLRLAKYGQPMINSISDE KERFEAVLPSAVKYKAKLVALCMDDTGMPETGEDRVRVAQSLYQKLTAAGVSDENIYF DPLVKPISAVEKAGVEVLESIKLIKQLYPKVHFTCGLSNVSYGLPNRKVLNRLFVVQT MTMGMDGYILNPTDKGMMGVVYASLALLGQDSYCMNYLTAHRKGLYED" gene 1862442..1864418 /locus_tag="Dhaf_1734" /db_xref="GeneID:7258703" CDS 1862442..1864418 /locus_tag="Dhaf_1734" /inference="protein motif:PFAM:PF01968" /note="PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mac:MA0858 hydantoinase" /codon_start=1 /transl_table=11 /product="Hydantoinase/oxoprolinase" /protein_id="YP_002458216.1" /db_xref="GI:219667781" /db_xref="InterPro:IPR002821" /db_xref="InterPro:IPR008040" /db_xref="GeneID:7258703" /translation="MLLGIDTGGTYTDGVLLDSRQQVIAKAKALTTHQDLVIGIRNCL INLQEHDGKQVHDWQQIRLVSLSTTLATNAVVEGRGCEAGLLLIGGEPAGTLPTQHYA VLQGGHDISGNPQADLNPGEIRATLAQWQGKVDAIAISGYLSVRNPEHELRVRELVGE VLGVPVVCAHELTSSLGFQERTVTAVLNAKLIPVIQALMVSVKTVLREFKIQARLMIV KGDGTLMTEEGAMAKPIETLLSGPASSIVGATALTGAERAIILDMGGTTTDIAVLKDG VPKVNPAGATVGGWLTRVRAAAIFTYGLGGDSYIKIDNKGQVLVGPQRVWPLAMAAGQ YPYLVEELQEQLEAVWTVPFAQPADSYIFLKDKTPLTLNEVESAALENLKSGPHTHLT LAKQLGIEPHFLNLQRLVEFGLLVKASVTPTDLLHVRGSYTPGNVSAARLGIKMMAHR LGVSAEEFIDLALHQVTEKLSLALLASMLNYTKGSGHSKGSLQAEIFLDELFAPCPER PLNLSVQVNFPVIAIGAPVKDYLPKVAEKLQCRLIIPEHSEVANAVGAASGWQIETLE ALIRHTAQGDFILHSPWERRTFADLTEAKDYARRQFEEAAACSAEKAGVVDYEVMVNF ADEHLAGTSYAKGLYLYTKVQAAIIGRPHWLDAD" gene 1864449..1865114 /locus_tag="Dhaf_1735" /db_xref="GeneID:7258704" CDS 1864449..1865114 /locus_tag="Dhaf_1735" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bfs:BF2902 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458217.1" /db_xref="GI:219667782" /db_xref="GeneID:7258704" /translation="MEPVVLDSVSFNVSLPDLLKELHVRPSYVDKFEALVEEATAIAR PKAVYKKAVLEASGDSSVVIEGVELNSRVLRVNLREVSDFFPAVVTCGEELAAWANSI DDMVLNFWANALSEKAMRSAKAALEVHLQENYKTESLAQMNPGSVVDWSILEQRKLLA IIGDVKELIGVELTSSSLLLPLKSISGIWFPNENYENCMLCPKQCPNRKAVYDPDMYE RII" gene 1865234..1866754 /locus_tag="Dhaf_1736" /db_xref="GeneID:7258705" CDS 1865234..1866754 /locus_tag="Dhaf_1736" /inference="protein motif:TFAM:TIGR00842" /note="TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bay:RBAM_027160 OpuD" /codon_start=1 /transl_table=11 /product="choline/carnitine/betaine transporter" /protein_id="YP_002458218.1" /db_xref="GI:219667783" /db_xref="InterPro:IPR000060" /db_xref="GeneID:7258705" /translation="MKSASKVDKTIVWSSLIVSSAFIIATLVTPSGVSQILNAIFSFF TKNLGWAYMLSAAAFVAFGIGLAVSKYGHIKLGKDDEEPEYSRGSWFAMLFATGMGVG LVFWGAAEPIMHFDTSPFAANRTPEAASIAMRTVFFHWGLHPWALYGVVAMSLAYFQF RKGLPGLISSTFYPLIGEKGIRGPIGKIIDVIAVVVTLFGVATSLGLGTQQLTTGMNY VYGLPNTTSMALVIIAIITILFTIAAASGIDKGIKFVSNTNMVLAFLLMLFLLIVGPT KYILNTFFESMGNYLQNFVSLSFFLDTQGAVAERTGYDWIGSWSVFYWAWWITWAPFV GSFIARISRGRTIREFVLGILVAPPLLSAIWFSIVGGSALHIELFGSGGISAAVAEDV SSGIFAMLSHFPLSGPVALLTMILLAIFFITSAESATFVVGMFTSGGDLNPDARLKIV WGVVEGAIAAMLLVAGGLSAVQTVAFIFSFPFMLIMILMVVSMVKALGEGEKKPLQ" sig_peptide 1865234..1865338 /locus_tag="Dhaf_1736" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.692) with cleavage site probability 0.429 at residue 35" gene 1866989..1867714 /locus_tag="Dhaf_1737" /db_xref="GeneID:7258706" CDS 1866989..1867714 /locus_tag="Dhaf_1737" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF820; KEGG: swo:Swol_1625 hypothetical protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002458219.1" /db_xref="GI:219667784" /db_xref="InterPro:IPR006442" /db_xref="InterPro:IPR008538" /db_xref="GeneID:7258706" /translation="MRVPSTEVQNSFGKYLKFVEVNEEIIVTKNGKDIARILSCDDPR KSLVAEGAAEYQTREGRVTYEEFLELVEASEQRFELIDGVIYNLASPSYEHQYAVHEL FGTFYNWFKNKKCIPLTSPFDITLFKAEDNICVVQPDIIVICDRDNMDPKGKYQGVPT LVVEVLSPSTRSKDILKKLELYKQCGIKEYWMVDPKNNLVTIYSLDQNEITDSAAFHK GAHDYVESGYFKGLKVALADMFL" gene 1867834..1868151 /locus_tag="Dhaf_1738" /db_xref="GeneID:7258707" CDS 1867834..1868151 /locus_tag="Dhaf_1738" /inference="similar to AA sequence:KEGG:Moth_1274" /note="KEGG: mta:Moth_1274 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458220.1" /db_xref="GI:219667785" /db_xref="GeneID:7258707" /translation="MVEVKVNPGVCGLKSLIKVSSEDKQKALIEFQTACPNLKPLEQE LKEVDGFKECFAKLGESQVYELGKKYCKHPACPVPSAVIKGIEVACGLALPRDVEIKI EKL" gene 1868394..1868885 /locus_tag="Dhaf_1739" /db_xref="GeneID:7258708" CDS 1868394..1868885 /locus_tag="Dhaf_1739" /inference="protein motif:PFAM:PF01243" /note="PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mma:MM_2982 antibiotic resistance protein" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-related FMN-binding" /protein_id="YP_002458221.1" /db_xref="GI:219667786" /db_xref="InterPro:IPR011576" /db_xref="GeneID:7258708" /translation="MFREMRRSKQLLSREDTVAVMDRCTNGVLACLGDDDYPYAVPFN YVYCNDKIYFHSAKAGHKFEAMMKNPKVSFAVIDEDTIVSAEYTSYFRSVIAFGKARI VEGDERLEAFQALVEKYSGDQSEEAKQQEISKCTQAYIMAIDVEHITGKEAKEYVKAK QSR" gene 1868966..1869643 /locus_tag="Dhaf_1740" /db_xref="GeneID:7258709" CDS 1868966..1869643 /locus_tag="Dhaf_1740" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_2548 transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458222.1" /db_xref="GI:219667787" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258709" /translation="MSKIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEA NPSLAVIDLMMPNMDGYELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTK PFDGDELLLRVKALMRRYRIEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLF KLGGFPGRTFTRDQLLEGVWGYDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLG YRLEVQV" gene 1869640..1870710 /locus_tag="Dhaf_1741" /db_xref="GeneID:7258710" CDS 1869640..1870710 /locus_tag="Dhaf_1741" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_2547 two component sensor kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458223.1" /db_xref="GI:219667788" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258710" /translation="MRNERPRPGPPSVIRGILMLILIYGSALAGGYGITAQIYRVTGP PSELLRQVFSGLTALALIAMVMGLTASWRMGRGQRPHENIHDILTDALAQIARGNFDV FLDAKATNMHHDLAEAINDMARGLGNLETMRQDFISNVSHEIQSPLTSISGFAGLLKK EDLSAEQRRRYAEIIEGESKRLSSLSENLLKLTTLDNSKLPLNRQDFRLDKQLEHVAL LLEPQWSAKNLTLEAELPLCILCGDEDLLSQVWTNLLHNAIKFTPEGGQISIGLKQEG DAAQVTIGDTGIGIGPEDRIHIFERFYKADKARARSAGGNGLGLSLVKKIVDLHGGSI RVESTIGEGTTFEVFLPGLHCV" sig_peptide 1869640..1869729 /locus_tag="Dhaf_1741" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.716) with cleavage site probability 0.692 at residue 30" gene 1870856..1871800 /locus_tag="Dhaf_1742" /db_xref="GeneID:7258711" CDS 1870856..1871800 /locus_tag="Dhaf_1742" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dau:Daud_1126 daunorubicin resistance ABC transporter ATPase subunit" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458224.1" /db_xref="GI:219667789" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258711" /translation="MGVIEVKNLVKQYKNAKTPSVDGVSFTVNKGEFFAFLGPNGAGK TTTISILTTTLAKTSGEVNIAGFDVEKEARQVREKIGIIFQKPSLDVQLTAEQNIRFH AALYGMCTYQPSFKLMPAAYRKRVLDLAEIVGIEDALFKPVKNLSGGMQRKLEIIRSL MHTPEVLFLDEPTQGLDAVSRRGLWDYIDRVRQEYGTTVFLTTHYIDEAEKVDKVCII NHGKIAACQSPTELKQSLLRQELIVDAADRNALTAELSGLNLSYKLNGQISVPLQGQR AQELIARLQTPLTVLRIHEPSLEDAYIEFLNKSGGEAQ" gene 1871797..1872615 /locus_tag="Dhaf_1743" /db_xref="GeneID:7258712" CDS 1871797..1872615 /locus_tag="Dhaf_1743" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: hmo:HM1_2035 daunorubicin resistance transmembrane protein, putative" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002458225.1" /db_xref="GI:219667790" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR013526" /db_xref="GeneID:7258712" /translation="MSGQVLTRKKSRIYREASTVLAIFAREVTVALKSPGTLIMSLAM PMIMMGMIGGNLMQNMAGGLGFQFGTFMLVGMLVNMLFMTTTMGVASLVDDHDSNFSE EMLIAPVSRYGIVIGKIFGSMFGAVLSMVGTLIVGLVMGITLPFTQLLLILALSPLIC LSAGALAMILIGLIQNRKTANLAVMLITMPQMFLSGAIIPINHSSGVLLVLSRMMPMT YCLDLVRAVVYRGTPEYSSVVMFNPVVNFAAIVGLTVLCLIIGTFFFARSEKNR" gene 1872701..1873591 /locus_tag="Dhaf_1744" /db_xref="GeneID:7258713" CDS 1872701..1873591 /locus_tag="Dhaf_1744" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: bce:BC3312 3-oxoadipate enol-lactonase" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002458226.1" /db_xref="GI:219667791" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR000639" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7258713" /translation="MAAHLTVKQLKLENGETLAYREAGNGNNILLLVHGNMSSGVHFL PIAERLPPGFKAYIIDLRGFGDSTYNNRIDTIKELSDDLSAFVNKLAVENFTIIGWSA GGSVCLQFSADYPDRVKKIVLIDSVGHSGCPLFKKDEQGKVLMGQVYKDRAEMAEDPE VAPCLQAIENKNFQTMSILWDRAIYSHRKPLPEDNKLYINATLKQRNLVDIYWALALF NISDKHNGYTEGTNLINKIKAPVLSLWGEKDSIISEAAAKGTVEALGEKGELIVLKDS GHSPLIDCPDVLMKKIADFR" gene 1873795..1874661 /locus_tag="Dhaf_1745" /db_xref="GeneID:7258714" CDS 1873795..1874661 /locus_tag="Dhaf_1745" /inference="similar to AA sequence:KEGG:Cbei_3214" /note="KEGG: cbe:Cbei_3214 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458227.1" /db_xref="GI:219667792" /db_xref="GeneID:7258714" /translation="MNPLLLQRLIPIMTAVPSIAIGVLAMYLNHVPALVWGQNIVCFL AMCLIYWIVVTYKFDFFSGSKHKTILLSLAMCLILLTFLNPGMEGVHRWISIGIIRLN IAMIVLPIIMIRIGQLVQTKELGLGSIAAIGTVFMLLLQPDASQLAGFAIPMMILIGS QTKSKRLRLFILSVFSVCTILSWVYLDNLPPVNHVEGIVSMVADIGFLWLIMAMVSLA ILPIPFLLFPPENAGLISRCIGVYYLIILVATVPGNFPVPLMGYGLSPIIGYFISLIW YMRSRYANQVYR" gene 1874757..1875035 /locus_tag="Dhaf_1746" /db_xref="GeneID:7258715" CDS 1874757..1875035 /locus_tag="Dhaf_1746" /inference="protein motif:PFAM:PF03795" /note="PFAM: YCII-related; KEGG: sth:STH1648 hypothetical protein" /codon_start=1 /transl_table=11 /product="YCII-related" /protein_id="YP_002458228.1" /db_xref="GI:219667793" /db_xref="InterPro:IPR005545" /db_xref="GeneID:7258715" /translation="MYVYLMKNIKPLHEEIIKDHVEYLKELKSQGRLVLCGPFTDYPG GMVVLLAEDLAEATSIAQADPFIASGCKSFEMRTLAEANEGNNYLLGE" gene 1875083..1875517 /locus_tag="Dhaf_1747" /db_xref="GeneID:7258716" CDS 1875083..1875517 /locus_tag="Dhaf_1747" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: drm:Dred_0308 MarR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458229.1" /db_xref="GI:219667794" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7258716" /translation="MKQIETDNTINLMSRINERANRFILAELEKREITDIAPSHGAVL AALFRDSELTMSEIAQRVNRDRSTVTNSVNKLIDSGYLATMKNAQDSRSTLVFLTPKG RELEPAFFQISQSLAMLEYQGISAEEREIFRKVLERIYMNFS" gene complement(1875715..1877040) /locus_tag="Dhaf_1748" /db_xref="GeneID:7258717" CDS complement(1875715..1877040) /locus_tag="Dhaf_1748" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: rba:RB11502 alkyl sulfatase or beta-lactamase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002458230.1" /db_xref="GI:219667795" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7258717" /translation="MNRYLGELKLIAEAKTGFPKGITKITDRVYFMLGYGGSTATLIE GQESCVLIDTLNGREAAEEALAELRQFTAKPIKTIIFTHYHHFDHTAGAGVFAAGGCE IIARTPLYPQYTRSELLKDIAAIRGARQFGVGLTPGEIISMGIGPMNELNSTKAILKP TRWFSEDRLTLNLDGIEVHLVGAPGETDDQLFVWLPQFKVLCSGDNYYHSWPNLYAIR GGQYRDISQWVSSLDAMLAYDAEHLLPGHTRVISGKEAVRENLTNYRDAIQYILEETL KGMNKGMTIAQLVDTVKLPEKWAVLPNLQEYYGTVAWTVRSIYTGYLGWFDGNPTKLG SLPVRIKAEKTLAIMGGAEKVYATAKQAIEHEDEQWGVELCDILLDAGEKVAESKALK AEGLLHLGRMQVSANARHYYLACAKELLGQSGPAKLAGAAMDMAKRNEG" gene 1877264..1878397 /locus_tag="Dhaf_1749" /db_xref="GeneID:7258718" CDS 1877264..1878397 /locus_tag="Dhaf_1749" /inference="protein motif:PFAM:PF07228" /note="PFAM: Stage II sporulation E family protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; KEGG: cth:Cthe_2166 putative PAS/PAC sensor protein" /codon_start=1 /transl_table=11 /product="putative PAS/PAC sensor protein" /protein_id="YP_002458231.1" /db_xref="GI:219667796" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR001932" /db_xref="InterPro:IPR010822" /db_xref="GeneID:7258718" /translation="MESNFELVKITKTITDMLDDHILVCNTEGKIVFANRIMQARLGY QEAELEHKSFWDIVEDRHGDKAKAFIASAAEPSGWERFLLKGQQGIVSLHLKFLLKEE YIYIYGNEKYIEYERIRKKLDVEIANAVKIHKRTLPERLPDTEQISFASLYIPAEELG GDIFDAFRVDHGLLNDYFEQYVCYIADVSGHGLDSAMLAIFVKDTINSFFRLKHIPGQ MLSPQEIVDFFVEHYLKEGYPEEYLVCLFMVVFDLKTKELTYCNAGFHICPLLIKDEE HIIELNNGGLPVSTGIHPDLLKYGDSCHHLSPNMTLFIMSDGLPEQQSENGLYQERLK KLITEIYCLKPTQIVEEIHKDFTSFLSYEKIRDDITLVAVKLS" gene 1878427..1878642 /locus_tag="Dhaf_1750" /db_xref="GeneID:7258719" CDS 1878427..1878642 /locus_tag="Dhaf_1750" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458232.1" /db_xref="GI:219667797" /db_xref="GeneID:7258719" /translation="MQQILNGILEAIEDEIKAQKHYQTLAENAADPKVKKFFEQLKRD EEEHEQALRTRYEAFMKLQEADQRGNG" gene 1878838..1880007 /locus_tag="Dhaf_1751" /db_xref="GeneID:7258720" CDS 1878838..1880007 /locus_tag="Dhaf_1751" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rru:Rru_A2567 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002458233.1" /db_xref="GI:219667798" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7258720" /translation="MILYNINMATILVVLVLGHLLTGALIMAYIGPQDRSRAVNMFLL AKFLQPMAWLILGLRGAVPSMALVAVGNSALFTGAALELIALMMLKNNYTEKVRRAYN ALLIGCIVVFIGVTAYGFQENVRITFASSITAILMVYPVYKLFRDKKASRLQKGIAVL YSITILFLLFRAVAALTTDMDMNLASTSIFNTWLFLLLYIVMLVGSTGFILLDKEKQD EELLKAASFDGLTNILNRKTFIERSNAVISLYLREQEQIAFLLIDIDDFKKINDKYGH FVGDAVLQDFADTLRKQLRDYDLFGRYGGEEFAILLPGTDEKQVKEVAERLRGTIANS SVDTGLKINYTISVGYCSITPDQETTIDMLYKLCDQALYMAKAHGKNCCRKAAEV" gene 1880013..1880699 /locus_tag="Dhaf_1752" /db_xref="GeneID:7258721" CDS 1880013..1880699 /locus_tag="Dhaf_1752" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1915 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458234.1" /db_xref="GI:219667799" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258721" /translation="MRYGMNKVLVVEDEDILREVIVDYLVENGYQALEAADGEKALEL FLANSVDLVILDIVLPKVDGWSVCRRIRRNSGIPIIILTARSDEDDSLLGYELGADDY LIKPYSPRVLMAKVKRFLEKTSDTVEEMQISAGGILLNLGSRCVSVEGDPINLTHTEF EILAYLMQNKGLVITREQLITKLWGYDFYGDEKTVNSHIRNLRSKLGSKGSSIVTVIR SGYKFTEEQL" gene 1880696..1882432 /locus_tag="Dhaf_1753" /db_xref="GeneID:7258722" CDS 1880696..1882432 /locus_tag="Dhaf_1753" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1916 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458235.1" /db_xref="GI:219667800" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258722" /translation="MTKSIVFKWFLLTALLFSTLFLVMGITQNYFFEKYYIDRKSDTL RLDMKEYTERAAMMGAEAASQELYKHNRVWITELDEYGRIRDVEDYYIEVKLKDEAQG RWRIPMYSFAGEFSADVLSSLTVGDEVIIDTVNIGEERIPYHIQTGSTGVVNLNLAHK LHGPQADQAYSHLSTGLYKGTITETVFPERPEDIAFPYQEHYFLEQVKEFQAGLLAEQ GQPLQDSKEWGAVENFAEYKLISEPIREHGAKGYILAMTSLQPVDEAIGVIRQFYPYF LGVALLCMLVLAFVLSKWLAKPLLSINRITGKIAAMDFTEKLPVGSEDEIGQLSRNIN HLSSRMEGYIEQLKRDLDQEKRLEKTRKEFIAGVSHELKTPLAVMKSCLAIIKDGIAA EKREHYFQAMEEEIERMDLLVVNMLDLAKFASGTYKPEMAPFAIDQAIAEAARSLAEP IGEKNLTLTLNLCSLRVVGHQGLISRVITNFLSNAIRHTEEGGAIAIAVSDKGQTAEI SVENQGSPLAEADRKKIWEQFYRGEARAAKAGTGLGLALSKEILELHHGVYGVENTRD GVRFFFTLPVQP" sig_peptide 1880696..1880773 /locus_tag="Dhaf_1753" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.765 at residue 26" gene 1882612..1883691 /locus_tag="Dhaf_1754" /db_xref="GeneID:7258723" CDS 1882612..1883691 /locus_tag="Dhaf_1754" /inference="protein motif:COG:COG1538" /note="KEGG: ckl:CKL_3072 hypothetical protein" /codon_start=1 /transl_table=11 /product="Outer membrane protein-like protein" /protein_id="YP_002458236.1" /db_xref="GI:219667801" /db_xref="GeneID:7258723" /translation="MKKYIVGISAALIMVFGAYTAYGAEDSLDIEKVAIKAIQYSTEV KAKASAADLTLDRYGKDLHVTNAWSASSVIYAPLNAQYQIDLSYGDLQITESSVRLSA YQHYITMLKNKYKVELQQKFVDKLTIENEDAENKLKSGGISEYDAGMIAANLAKERIT LKKYQRSYDADVINLNKVMGEPVLNKYANFIDQNIKPSATLRPLEDYIQAGLASRYEV TSAESSLEVTKVRQAIEAPDKSQSMPLDYYQATTQYDLAQGQNEIAKARIQVELDLTS GYSELESRLRTWENTKILLESAQSDYDLVKQNYDLGRAGKDELITAEKDYMEAQIQVK NAELDAWLFQMKMELASGIGPGISQ" sig_peptide 1882612..1882683 /locus_tag="Dhaf_1754" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.758 at residue 24" gene 1883712..1884926 /locus_tag="Dhaf_1755" /db_xref="GeneID:7258724" CDS 1883712..1884926 /locus_tag="Dhaf_1755" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_3071 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458237.1" /db_xref="GI:219667802" /db_xref="GeneID:7258724" /translation="MKKILSLVMALIVMIAVSVPMATLAGEETAGADNTTVKSETGEV VETVEAVETVESVEPVTVIDTLTLEKAYETIEEHNQELKLMNDKINLYEKQYQEAVDR SNWARGKSVGGDEEQNVTYRKEELLYPKQRLLELDGAKHEREEKLKELKAGVKKQYLE IGVFQEELANTQSELAALDKTIEHTQTQINSGSLPQSALKPYDAQRVQMLSKIETTQR QISLNLKGLERDLGVKLAGQTKLEPLAGEPVLFDDGDIANEISKAWEDSYDYLSQQGQ LELAEIECDIIRYNTYIDNNLNQLHQLEASVSNNQAKLEQVKPNLEATLWNKYYELKN LEGDLEIAKINLEDAEYTLSITQSKEGLGTAKGSSVVDDTIALNQQKVKLQKAINAYS LAADELNSLLTK" sig_peptide 1883712..1883789 /locus_tag="Dhaf_1755" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.969 at residue 26" gene 1884944..1885636 /locus_tag="Dhaf_1756" /db_xref="GeneID:7258725" CDS 1884944..1885636 /locus_tag="Dhaf_1756" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbt:CLH_1915 transcriptional regulatory protein ResD" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458238.1" /db_xref="GI:219667803" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258725" /translation="MSTAGHILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKA YETAPDLIILDLMMPKLSGMEVCRTLRKTTDVPIIMLTAKGEEIDKILGLELGADDYI VKPFSPREVVARVKTVLRRKLPQSKDTEPILKYDGLEINISSYELRLNGTPVSCTPKE VEVLYLLAAHPGQVFNREQIIQNVWGSDYFGDTRSVDTQIKRIRQKLAGEKMKWGIKS IYGVGYKFEVLS" gene 1885670..1887514 /locus_tag="Dhaf_1757" /db_xref="GeneID:7258726" CDS 1885670..1887514 /locus_tag="Dhaf_1757" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: sth:STH3307 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_002458239.1" /db_xref="GI:219667804" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7258726" /translation="MQSIFAKAAAITRGCYSRNGSTVKKKSSFLKRILILMITTIALY SFLITIFFWFTTNDMFRELQTRELKPSAEAIADLVLKYQQGTMSKDDLEEHFNLNKGI WNFVVHVYDGQGNLIIKNEEILTTLFRGKNAEIGLNLNPVLKEYFSSVLSGDSVVANK GPFLIVGQPIAHNDSIVGMVFLGKPQIEIFTALSGLNRSIWISALGVLLLLSFPLYRA ARYIAHPLKQMRDVAISMANGNLKEQANEKYGGEIGELAHSLNYLSARLSETISALEL ERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFGKNPGEGRMSLIPSQELWEDFD AVLAQGYTIVRSLQWKQMLLRVTICPLEDETHHIAGVVGLFRDITESERLEQTRREYV ANVSHELRTPVSALRALSETLADGMVSDEETKNRYYNHMLHETMRLTRLINDLLTLSR LQSHTEQVHTEAFLINEVTGSVAERYKPLAQKKGLRFDYSPLVHDLKVMSNMDLVEQV LIILLDNAIKYTQSGGRISLGTVLDKDRVKVSVADTGMGIAPEDLPHIFERFYKADKA HSTQGTGLGLAIAFEISQRLGEEIYVESHLNEGSTFTFTLSCSGASAS" gene 1887752..1888153 /locus_tag="Dhaf_1758" /db_xref="GeneID:7258727" CDS 1887752..1888153 /locus_tag="Dhaf_1758" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_3684 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458240.1" /db_xref="GI:219667805" /db_xref="GeneID:7258727" /translation="MGLEKLILVCVTDQKNCARLIKAGDTLAKSLAMKMKILSVQPSK EVQKLEDTYLEYLFNVCKSMNAEMKVYWGEDVNRIAIDYIRHECIRQLVVGEPEKMEP GNFVYEVHQAFPDLPILVVDRLNNHRNLSSF" gene 1888210..1889583 /locus_tag="Dhaf_1759" /db_xref="GeneID:7258728" CDS 1888210..1889583 /locus_tag="Dhaf_1759" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cbt:CLH_2561 putative HylD family protein" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_002458241.1" /db_xref="GI:219667806" /db_xref="InterPro:IPR003997" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7258728" /translation="MDKSKLLKKLRKPKRTTLIAALAVVVIGIWGITALLGGNKSASA NVAHTKLAKTELINSVDVSGSIKSKNTQKVYSTLSYSVKEIYVNIGDKVEAGEPLAQL DTSSLELDIAQQRSTFEASQKTGTINLESKKRIYEDTKKQYENGMNTELLNAENSLKS AENDLTTKKNTYENNVESYKFGAVSKQELDQSEAGYKLAQNTYNKAAASLEAAKIKAA QDVKTAEANYNSALADYNNDSQKIALDKLEKNLADATIKAPISGVVTAVYAEAGSPGN GLLFVVEDAEKLTITTYVKEYDADKVKPGQMVNIKTDATEDELFAGQVVRISPASTKT ANGTTDTSNTTVEFETEVDILEPDDQLKIGMNARLNIIIEKKADVYSVPYDAVSVNNQ GQSIVYILTGENGRQRMEETVVEVGMMTDYYTEISGEGLADGVLVVNNAASAGTGDKA RPGAAMK" sig_peptide 1888210..1888344 /locus_tag="Dhaf_1759" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.558 at residue 45" gene 1889596..1890348 /locus_tag="Dhaf_1760" /db_xref="GeneID:7258729" CDS 1889596..1890348 /locus_tag="Dhaf_1760" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_0237 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458242.1" /db_xref="GI:219667807" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258729" /translation="MNEKMIEIRDLVKKFYIDTPNELEILKNISLTVGKGEFISIVGA SGSGKSTLMNVIGALDRPTSGEYILDGAPIQNMSDLELSDIRNRKIGFVFQTFNLIPR NSALKNVELPMLYAGMGSRERREKAEELLKLVGMEDRLDHLPNELSGGQKQRVAISRA LANDPAIILADEPTGALDSVTGRMVMDLFHQIHETKGTTIVLITHNYELAEETDRIVT LKDGIIIDEQIRPKTPASIGSGCQSEERGENG" gene 1890345..1891619 /locus_tag="Dhaf_1761" /db_xref="GeneID:7258730" CDS 1890345..1891619 /locus_tag="Dhaf_1761" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: cbt:CLH_2559 ABC-type transport system, involved in lipoprotein release, permease component" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458243.1" /db_xref="GI:219667808" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258730" /translation="MNMVENILLALAALKANKMRAILTMLGIIIGIASVIAIVTVGNS LTASITSTMEEMGANSIVVSVRERGGDEFGGGPRGPNQAAATPEESDLFSEDTIEAFA SRFGDRVEAISLSQGVGSAKAQDGRLYANISVTGVNDGYEKANNLDLLFGRFITEKDV KSVKKVAVVSDKLVNNMFSAGVDPLGQEIKIYSSDDIEVYTIIGVYQYEASAFGPDSS SERDTRTNFYIPVSLAKQDSTTKNYQSFTIVTKTGVNAATFTEDIKSYFTKVYEKNTK WEVGVMNMESTISSMTSMLSTVSIAISIIAAISLLVGGIGVMNIMLVSVTERTREIGT RKALGARNSYIKMQFIVESVIICVIGGIIGIILGLILGMLGSTLLGYPASTSIGIIIL SVSVTMVIGVFFGYYPANKAAKLDPIEALRYE" gene 1891877..1892506 /locus_tag="Dhaf_1762" /db_xref="GeneID:7258731" CDS 1891877..1892506 /locus_tag="Dhaf_1762" /inference="protein motif:PFAM:PF00657" /note="PFAM: lipolytic protein G-D-S-L family; KEGG: amt:Amet_1979 GDSL family lipase" /codon_start=1 /transl_table=11 /product="lipolytic protein G-D-S-L family" /protein_id="YP_002458244.1" /db_xref="GI:219667809" /db_xref="InterPro:IPR001087" /db_xref="GeneID:7258731" /translation="MKKIIAGFLMGILLLGMTACGKGTGTAEEDVAKVTDGAAKFENS VFIGDSLTEGFAFNEILPQEQVIAGAGATAGFSYDDLDALAEKKPDQVFIMLGSVDIL MPVEDPQELFREDLTKLINRIKEELPGTEIYLQSITPVTQEALEQEPRYAGIGEYNGI LKEVAGQSAVHYVDIGVLARENPALYAEDGIHFQKEFYQLWLQKLSESL" sig_peptide 1891877..1891942 /locus_tag="Dhaf_1762" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.831 at residue 22" gene 1892518..1893924 /locus_tag="Dhaf_1763" /db_xref="GeneID:7258732" CDS 1892518..1893924 /locus_tag="Dhaf_1763" /inference="protein motif:PFAM:PF03062" /note="PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: amt:Amet_1980 membrane bound O-acyl transferase, MBOAT family protein" /codon_start=1 /transl_table=11 /product="membrane bound O-acyl transferase MBOAT family protein" /protein_id="YP_002458245.1" /db_xref="GI:219667810" /db_xref="InterPro:IPR004299" /db_xref="GeneID:7258732" /translation="MLFSSLLFTFAFLPVTVLLYYCLGRRLRNSVLLTASLFFYAWGE PVYVLLLCGSILVNYGLGTFWGSDEAGGGKRKLFLIISLVFNLGSLIYFKYLAMILST FTAMGGWNVPGEAPALPLGISFYTFQTLSYGIDVYRGRIKPQKSLLLFALYIAMFPQL VAGPIVKYADIESQLGNRSMTVKALYAGMGRFLGGLAKKMLLANPLGLLWAEVKAMPG TEMSAFLAWAGIIAFTLQIYFDFSGYSDMAIGLGKMFGFRFKENFRHPYMAQSVSEFW RRWHISLGSWFKEYVYIPLGGSRAGKWKLLRNLLIVWFLTGLWHGASWNFVLWGLYFG TLIGIEKLFLQTRLPGWPRAVRHSYLLLLVVIGWVFFEFTSLADGLGFLGSMLGRGGK GFIDAQAIMKLKAYALLYSVGILAASPGPGKLASLWQRGCGGNHQWAVSLYYCVLLFL ATASMVGSTYNPFIYFRF" gene 1894040..1894345 /locus_tag="Dhaf_1764" /db_xref="GeneID:7258733" CDS 1894040..1894345 /locus_tag="Dhaf_1764" /inference="similar to AA sequence:KEGG:Cbei_2782" /note="KEGG: cbe:Cbei_2782 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458246.1" /db_xref="GI:219667811" /db_xref="GeneID:7258733" /translation="MKNKGNFAMLRHAVGMLPFLLILAMLILHLALPDKTFSKEERRY LAQWPVFHIEEVIDGSYERKVESYFSDQFPLRNFWVYIEKSSRRILRTSTPIKTDAD" sig_peptide 1894040..1894132 /locus_tag="Dhaf_1764" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.765) with cleavage site probability 0.762 at residue 31" gene complement(1894342..1895199) /locus_tag="Dhaf_1765" /db_xref="GeneID:7258734" CDS complement(1894342..1895199) /locus_tag="Dhaf_1765" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: drm:Dred_2374 beta-lactamase domain-containing protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002458247.1" /db_xref="GI:219667812" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7258734" /translation="MKLTVLVDNNTILSNNPHFQDRYFLSEPGLSIFIEADGKKVLFD TGHTGIFLQNSEKMNLDLSDLDYLVLSHGHIDHTGGLKSLIDFYQNQGKTNLKDKPTL IAHPECFLSKIDSPWGEIGCGIPEAEITCHFQLQLSREPLWLTENLVFLGEIERSNDF ENLTPLGKVHKNTEGQDDYILDDSALVYKGSKGLIIITGCSHAGICNITKYAQKVCRD ERVIDIIGGLHLINPGPIQMEKTKEFLKNVAPQTIRACHCTSLRPKIALAESLNMEEV GTGLQLEYY" gene 1895606..1895932 /locus_tag="Dhaf_1766" /db_xref="GeneID:7258735" CDS 1895606..1895932 /locus_tag="Dhaf_1766" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mmi:MMAR_3574 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458248.1" /db_xref="GI:219667813" /db_xref="GeneID:7258735" /translation="MQRVNKAVPRIQLPDRSYYLLNVPLNKIAKGVFMDKNGLEPLSP SLWWPDDRTWCVATEIDFRWTYIGGSQACINELLDHEQLENLATKPEHRGDYASDVVN GPVYPY" gene complement(1896230..1897711) /locus_tag="Dhaf_1767" /db_xref="GeneID:7258736" CDS complement(1896230..1897711) /locus_tag="Dhaf_1767" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbl:CLK_1526 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458249.1" /db_xref="GI:219667814" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258736" /translation="MIQFENVSFAYAGQTSGNLRELNLTIENGECVLFCGRSGCGKTT VTRLVNGLIPYFFAGKLSGRVVVNGLDIARTPMYQIAGKVGSVFQNPRTQFFNVDTDS EIAFGIENEALPTEELHRRVKGTAEDLRISQLLGRNIFELSGGEKQKIAFASVYAMNP QVYLLDEPSSNLDMKAIRELKDHLQLIKSQGKTVLIAEHRLHYLMDLADRIVYLEEGR VAGIYTPSQLAALPDDARSLMGLRAVDLNRVHPVEKRTLTGSPVLTLQNVDLRYKKHT ILENISLQAAGGEIIGVAGHNGAGKTTFSRALCGLHKDCGGSFFWKGKETQPKARRKS AYMVMQDVNYQLFAESVAKECAFGIKNPDHSLIERTLTELGLQGLKERHPNTLSGGQK QRVAVAVSMVCGKEVLVFDEPTSGLDYDSMAQVAELLKKLAQQGKIIFVVTHDVELIG QACSRVLHFDAKGVPQDLAVTRDNEAGLRALFGMAQPQIANKH" gene complement(1897724..1898422) /locus_tag="Dhaf_1768" /db_xref="GeneID:7258737" CDS complement(1897724..1898422) /locus_tag="Dhaf_1768" /inference="protein motif:PFAM:PF02361" /note="PFAM: cobalt transport protein; KEGG: san:gbs1743 hypothetical protein" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_002458250.1" /db_xref="GI:219667815" /db_xref="InterPro:IPR003339" /db_xref="GeneID:7258737" /translation="MNGSPLLRFDPRTKILLILLCVLSTAMAPSLNYVLGLVSLIALL GILGGKGLYALVGLMVYAVLFLLTKAALAGGETTLHTTLIAFLGLFHKVYPCGFLAGI VIATTKVSEFLSAMHRIRAPQSLTIPLAVMLRYLPTIREDWRFIKDAIRLRDVSPSLK GLLTQPVMTVECLYVPLMMSASRAADELSIASVTRGIENPAPRTCLTQIRFGFVDLLT VFCFGVYFATGQFL" sig_peptide complement(1897724..1897822) /locus_tag="Dhaf_1768" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.910) with cleavage site probability 0.738 at residue 33" gene complement(1898419..1899030) /locus_tag="Dhaf_1769" /db_xref="GeneID:7258738" CDS complement(1898419..1899030) /locus_tag="Dhaf_1769" /inference="protein motif:TFAM:TIGR02185" /note="TIGRFAM: conserved hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; KEGG: san:gbs1744 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458251.1" /db_xref="GI:219667816" /db_xref="InterPro:IPR011733" /db_xref="GeneID:7258738" /translation="MANQTYLNKQGLTVKDLVTIGIFTALLWVTMLIGGLPLAPNPVT TFYMPLSAALLGGPVFLLLVAKVPKRGPIALAGILIGIIWFAAGMHWAMDLGYVLGSI LGDFLAGTKKYKSVKMNILAYICLSLGCTGSYLCFFADPVTWGSYMLEGGTSASYIDT MNAAAQGWMPYAILLGTVAVAAFSGWVGSRLLKKQFAKAGITA" gene 1899228..1900190 /locus_tag="Dhaf_1770" /db_xref="GeneID:7258739" CDS 1899228..1900190 /locus_tag="Dhaf_1770" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbl:CLK_1529 AraC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458252.1" /db_xref="GI:219667817" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7258739" /translation="MTDVIEEVYAPILTQNGFVPRPENKRFGAMGLCWELIGEHGAGY YWTYGQRDLFDIKIHDFYFNQDMMIEFRLPACLSITYYESVSGEELSPCRPLSAGCTK AFVGGDAPCRVLIHGGIPVRCIGIEIMPAYYEDYLRRQYPGEYVNPLAAFQTLDQTEH FPEMVRLLDQVKNYRGNGIAAKLFYEGKVAEAVSLVVERHKGHLQSTKLQLADRDRKQ IETVTAYINDHYPCELPLEQLAKIACMGTTKLKTSFRIVHDCTITEYIQQRRMSQAQY LLSGTDLTIGQVAQTVGYKSASRFAELFKKNTGLQPGEYRKISG" gene 1900318..1900449 /locus_tag="Dhaf_1771" /db_xref="GeneID:7258740" CDS 1900318..1900449 /locus_tag="Dhaf_1771" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458253.1" /db_xref="GI:219667818" /db_xref="GeneID:7258740" /translation="MQLSLFLVSATYNPGAKHNGVEEDDFTHLESKRRGTNEEYQGL" gene 1900427..1901338 /locus_tag="Dhaf_1772" /db_xref="GeneID:7258741" CDS 1900427..1901338 /locus_tag="Dhaf_1772" /inference="protein motif:PFAM:PF01636" /note="PFAM: aminoglycoside phosphotransferase; KEGG: bha:BH2734 hypothetical protein" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_002458254.1" /db_xref="GI:219667819" /db_xref="InterPro:IPR002575" /db_xref="GeneID:7258741" /translation="MKNIRGYETFVKVEPLHKGWSGDQKYYIETAEGRRLLLRIADSS EYSRKKTEFAMMGQVAALGVPMSRPVDFGICDNGRSVYLLLTWCEGEDAEIVLPRLTE QEQYRLGKESGELLKRIHSLPAPEEGEEWSSRFNRKASQKIEKYKACGIKLNGDTEMT GYIENNRHLLAGRPQYYQHGDYHTGNMIVSGENTLSIIDFNRFDFGDPWEEFNRIVWS AAVSPQFATGQLDGYFGGKPPLEFFRLLAFYISSNLLSSIPWAIPFGEEEVVTMKKQA EEVLGWFDDMRNPVPTWYLQDSLMERG" gene 1901344..1902249 /locus_tag="Dhaf_1773" /db_xref="GeneID:7258742" CDS 1901344..1902249 /locus_tag="Dhaf_1773" /inference="protein motif:PFAM:PF04294" /note="PFAM: VanW family protein; KEGG: amt:Amet_1426 VanW family protein" /codon_start=1 /transl_table=11 /product="VanW family protein" /protein_id="YP_002458255.1" /db_xref="GI:219667820" /db_xref="InterPro:IPR007391" /db_xref="GeneID:7258742" /translation="MDYRYQTSKPVSRSKLRMILGRIYFTWRRYWQWTFNRSNRYALS SGERELAHSVAVHKTPLYRRLRHVDMWLQENKAINLKLACGKLNKIIVRPGETFSFWR LVGKPTQAKGYQKGMVLTNGSFTAGVGGGLCQLSNLIYWMTLHTSLTIIERWRHTHDV FPDANRTQPFGSGATVVYNYVDLQIRNDTPYEYQLLVRVGDNDLEGEWRCEHPSSRTF QIYESEHLIKQEWWGAYTRHNVIKRKTFDLSGGLLADEFVTENHALMMYEPLLQAGEE SDTTPPTTLHDISCDSEFTRYYPKS" gene 1902294..1902518 /locus_tag="Dhaf_1774" /db_xref="GeneID:7258743" CDS 1902294..1902518 /locus_tag="Dhaf_1774" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458256.1" /db_xref="GI:219667821" /db_xref="GeneID:7258743" /translation="MKKPITSLMLFVAVFIAVYLMLCYWPGFRIKLYAPPMEYFVESV KHMVVFKALVSAVVGLLAAGIGSVMQRRAK" gene complement(1902587..1902811) /locus_tag="Dhaf_1775" /db_xref="GeneID:7258744" CDS complement(1902587..1902811) /locus_tag="Dhaf_1775" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458257.1" /db_xref="GI:219667822" /db_xref="GeneID:7258744" /translation="MAPKFGDLKRFCDKNGWIMVLNTDHWYYEKVLNDGTLLRTKISH AVSKEIPQNLWDRILRKQLHITEKDFWKGL" gene complement(1902815..1903240) /locus_tag="Dhaf_1776" /db_xref="GeneID:7258745" CDS complement(1902815..1903240) /locus_tag="Dhaf_1776" /inference="similar to AA sequence:KEGG:PTH_0476" /note="KEGG: pth:PTH_0476 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458258.1" /db_xref="GI:219667823" /db_xref="GeneID:7258745" /translation="MTMLTELQFTEARSQFSTLYDSVFNSFSPAIVKRKQTEQIAMLR VDLLKMVLEDYKLNPEIIQEDDGSITLALDALEVYVNNSTLDLAAADLIEDLKLYAQD YLKRSQLFLHSPNRTHHFPYILRIMLCENDDEIRALAGL" gene complement(1903321..1904112) /locus_tag="Dhaf_1777" /db_xref="GeneID:7258746" CDS complement(1903321..1904112) /locus_tag="Dhaf_1777" /inference="similar to AA sequence:KEGG:CHY_2196" /note="KEGG: chy:CHY_2196 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458259.1" /db_xref="GI:219667824" /db_xref="GeneID:7258746" /translation="MPFSLGELLVVTLIIHMIDTFAYAVRLNSVKTGQFALSVTLFNL FYLISLVAHTIQAPLIGSLIDSSLSQSIDPLPQLRRLILAATAGTFAGILFMPTFLQF FHRAVFNLERAGSVPAIVREAVKIRSPGRLLHYFTLPSKKMVRNLPFQKIPKELIALN ALVTGIYTVGGMSAYYAAILVPEGHRLAAAASAGFLNTSANIIFMLFVDPKSSIITDQ ALRGNRPYADVKALVVFLMSAKLLGTFLGQLLLVPLAQAIAAFYL" gene complement(1904204..1905097) /locus_tag="Dhaf_1778" /db_xref="GeneID:7258747" CDS complement(1904204..1905097) /locus_tag="Dhaf_1778" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gtn:GTNG_1291 transcriptional regulator LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002458260.1" /db_xref="GI:219667825" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258747" /translation="MIELHQLRYFSRAAETLNFSRAAAELFISRQALTKSIQVLEKEL GWKLFKTNNGKISLTPMGEVMQAQCQPVLASYDMMLVQLEHYAPHKMRLLRVGAAVGT ILSLPENCIQSFCDAHPDVQLAIEQTSTDNVLQMVHSGEADVGLVGSIPDYLNGFSIQ RLVQKGTYVGICPGHPLYGRDSLELRDLKDQPFVTAGANNHLHRFLVQACHNAGFSPA IAFMSSSEDVLLQYALEHKMLFFAFGDWTCQIPDGPLQIVPLKVEKGKSFGTFLVWKN ELKPVSEQFLAYLLKTVDTTM" gene 1905240..1907000 /locus_tag="Dhaf_1779" /db_xref="GeneID:7258748" CDS 1905240..1907000 /locus_tag="Dhaf_1779" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458261.1" /db_xref="GI:219667826" /db_xref="InterPro:IPR001613" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7258748" /translation="MMKNFSRRDFIKGMSTATVGAGALGLLTACGSTNPPPAGADTPG ASQAQAGVPSFMMEPEAIPEDKIDETKTADIIVIGAGVSGLCLACRATELGSSVIVFA ASAKHVERGGSNHGIDTKTQQKKGINYKAKDMAHRLKQEFMAAGYNVDQEKWSTWLKH NTESMNWLIDKMENHGAGVTLELGYHDEDYLFDFAPASHNFVFPEGTSEVFKSNPFFG AAFGQALVNDMYQYEILKNGGKIDFETTALYLIRGDKANGKSGRVTAVIAKDSGGRYI KYVGKKAIVMATGDFSQNKEMMEAYCPQALDILAEREIDYNAGFQFGGLYPGDGHKMG LWAGAAWQKAYPNAAMVDNLNGPYSKGISNVCTINLNADGLRYMNEDTLCSYSAWATK QQPGKAAYYIWDSAYAHHYDEWATFGTTLGGDNAWNGPRTKTPEEMLAAWEEGVEKGT YVKADTLEELVTKLEGLNGEQALKTLKKYNEYCEAGYDPDFLKNAKELAPIKTGPFYG MKYTIGFANFLCVTGGLRTNPEMQVCDENDQPIEGLYNIGIMVGDMYANTYNFAICGH NLSSTCNTFPYLLAERLKEA" sig_peptide 1905240..1905362 /locus_tag="Dhaf_1779" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.899 at residue 41" gene 1907036..1907419 /locus_tag="Dhaf_1780" /db_xref="GeneID:7258749" CDS 1907036..1907419 /locus_tag="Dhaf_1780" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: amt:Amet_1551 flavocytochrome c" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458262.1" /db_xref="GI:219667827" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7258749" /translation="MFFVKKVIVPFLICLTALTMTGCGNSPASGTTAEPTSAAYTGTQ EATASGMGEVKVTITFDKGVVTACDVDAANETPDIGQLAAPTLAKAIVEKNAPIVDSV SGATVTSDAVVKAAKACFDAAGIKY" sig_peptide 1907036..1907128 /locus_tag="Dhaf_1780" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.746 at residue 31" gene complement(1907455..1908237) /locus_tag="Dhaf_1781" /db_xref="GeneID:7258750" CDS complement(1907455..1908237) /locus_tag="Dhaf_1781" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5411 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002458263.1" /db_xref="GI:219667828" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7258750" /translation="MKSGHGTLTYGGFSIHYALYGKGNPLLCLHGLNLDGRMFAGKNM KELFPDRMIVALDLPGYGRSDFIPGAGVLEISKLIDQLADKLDLNQFELCGFCLGGIF ALDYAIRNPDRLSRLYLIETMIYLPWWMTLCNTSVFHILYRGFSRNRLCLALLEMVPA LKGLRKMQSLKLTSRLWNNRVNSIYINMMKEYQKIDHLQRSKAVSCETMLIFSDQSFK MIRKTNYGLQAALRHSTLYRLPAGGHFSPVSGLTFPICRGGR" gene complement(1908234..1909448) /locus_tag="Dhaf_1782" /db_xref="GeneID:7258751" CDS complement(1908234..1909448) /locus_tag="Dhaf_1782" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_3076 radical SAM family protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002458264.1" /db_xref="GI:219667829" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258751" /translation="MNKRMIARMCLDKGTLANFLEIHRRFSPSPNYRLRNMVKCGLNA IKHDRLIRHEQSYLLNSFIPPLNSPAFLNIALQVPGEGPDFFDNHVQGKRLAPISTYI AVTGKCRYNCWHCSAASAGQSAGQKELSTPALIRIVQKLQDLGVGIIGFTGGEPLLRD DLEEIVAAVDRQKSMVLVFSTGFNLTLERAAALKGAGLFGIALSLDSVRKERHDELRG YPGAYDQALNGIRNARQAGLYTMSQTVCTRELMAEGEIFELAEMLKGSGIHEMRIMEP LPCGRLSGPSSALLSAEEQNQLKQLHITLNGDQRYPKASVFPYFESAEQFGCGAGTQH SYVDAAGNFGPCDFLEDLRYGNLLTDDVREVWQKMHQASGGPKCSCLAKDPEQCNSAL PKFYRLLGGIRP" gene complement(1909441..1910343) /locus_tag="Dhaf_1783" /db_xref="GeneID:7258752" CDS complement(1909441..1910343) /locus_tag="Dhaf_1783" /inference="protein motif:PFAM:PF08241" /note="PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: fra:Francci3_3233 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458265.1" /db_xref="GI:219667830" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7258752" /translation="MSKLRLYPKVARLFLGGHIVAGEDIANSYSLVSPGYEQWFLNTM HRYNDEMIGELSKHLDPSQSLQILDLAAGTGYNAQAMQGLFPASRLTLVDISPGMLKE ARQNLGEDVSLITSDMLNYLANCADNTFDVVICAWAIKYRNPLHVIRHCHRVLKPGGY LAVIVNTKDTLPQVARIYPQLLARHVPKITKLMLPLPNPRDLAAFDGWFRKYSFTKIK SQKGFQDFIFPTSRELAEFIVSTGALAGFDVMLDLRDPAVFADLVQLLADHHFTGTTH RYVYGIYQKLSCSQRNLRRRKANE" gene complement(1910340..1910984) /locus_tag="Dhaf_1784" /db_xref="GeneID:7258753" CDS complement(1910340..1910984) /locus_tag="Dhaf_1784" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nca:Noca_0360 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458266.1" /db_xref="GI:219667831" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7258753" /translation="MTSILFDVFYRSYDNFMKTFRLDDHEAILSQLRALAAKGRPGPP EPFKIADIGGGTGVLAHSLLELGHDVTIIDPAQRMTAIAKERNPRVTVINEALAKVSP EPLYDVIILRDCFHHIADQGPALSKLSQILQDDGLLIIQDFSPNSLRAQLLFTLERCL LEKIYPIPSSDLAAMMARAGFSGTIIRLNSRDYLAIGTKSSKQSTKEKPAEVEQ" gene 1911041..1911196 /locus_tag="Dhaf_1785" /db_xref="GeneID:7258754" CDS 1911041..1911196 /locus_tag="Dhaf_1785" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458267.1" /db_xref="GI:219667832" /db_xref="GeneID:7258754" /translation="MFSHKKDLPYGVILHYKGGSVYNVWLFWWLNENSSGDKVLAEKD KILVPVL" gene 1911205..1912842 /locus_tag="Dhaf_1786" /db_xref="GeneID:7258755" CDS 1911205..1912842 /locus_tag="Dhaf_1786" /inference="protein motif:PFAM:PF07556" /note="PFAM: protein of unknown function DUF1538; KEGG: cth:Cthe_0017 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1538" /protein_id="YP_002458268.1" /db_xref="GI:219667833" /db_xref="InterPro:IPR011435" /db_xref="GeneID:7258755" /translation="MKYFNTLKEVFISSLPLAAVIIIVCGFVAPMENAYDYVKLAVGY LGVVVGQALFLNGLDISILPIGKLVGSSLIRLKKALFIIIVGFLFGLLATVAEPALWV LAKQTHMIMAGVNEMVFVWVLSTGIGLFVGFSLFRILKDLNIKIVFAVFYIVIFIVVI FVPEQFIALAFDGSGATTGDVSVPFILALGLGISATMSKSKTNEDTFGIIGLASVGPI LAVFIYGIVLKGVYGGVIPPAGLYNPGAVEHLGEIILDNMGGVALALFPIVIVFLPFQ LFLIKLSKREFIKILLGTLVVYVGLLIFLSGIDFGFAFAGKYIGEVFLDAARPGWFKW LLLLVGFVLGAAITLSEPAVTVLGEQLEEITNGHITKMSIRITLAIGIGFAALICMVK ILTQINILWFLIPLYAIALIMLRFSSRLFVGLAFDSGGVTGGALTSAFLTPLTLGTAQ AVAASAGPGAQSVLINGFGIIAFISVTPLIAVQALGIIYDIRLSKTRKLITEAEAAEL EELAALAAQAGKTETRDVQKKETNEESFIMEVKDRHE" sig_peptide 1911205..1911309 /locus_tag="Dhaf_1786" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.792) with cleavage site probability 0.727 at residue 35" gene 1912835..1913161 /locus_tag="Dhaf_1787" /db_xref="GeneID:7258756" CDS 1912835..1913161 /locus_tag="Dhaf_1787" /inference="similar to AA sequence:KEGG:Cthe_0018" /note="KEGG: cth:Cthe_0018 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458269.1" /db_xref="GI:219667834" /db_xref="GeneID:7258756" /translation="MNNCLNGLVFLTLIAGRKQKEALLDALTERGGRLVNIVYGRGTI NAGYLKSILGMVPEENKVVITCLLPGEKSDAVLEMLIKKFNFDQPNTGIAFTIPVEGL SVAKRC" gene 1913214..1913525 /locus_tag="Dhaf_1788" /db_xref="GeneID:7258757" CDS 1913214..1913525 /locus_tag="Dhaf_1788" /inference="similar to AA sequence:KEGG:Cthe_0019" /note="KEGG: cth:Cthe_0019 P-II family regulatory protein" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_002458270.1" /db_xref="GI:219667835" /db_xref="GeneID:7258757" /translation="MENDNNLKALYIIVNAGFADEVVEIARQAGAGGGTVINARGSGP VHKSIMGITVDTEKEIILSIVNEDAVENIMAAIQEKAGLNSPANGICFIMPVEKCLIK Q" gene complement(1913791..1914387) /locus_tag="Dhaf_1789" /db_xref="GeneID:7258758" CDS complement(1913791..1914387) /locus_tag="Dhaf_1789" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_1901 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458271.1" /db_xref="GI:219667836" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258758" /translation="MDCAKVGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGC PDVTLWSGLSAVLGADIQKMLEGKLDPNSPDVGKIDKTLFYVCPACGNILTSTGKASL ACCGRKLQPLKPVPCTADHAITVEKLDMDYFITIDHDMMKDHYIPFVAYVLYDRMLLT RLYPEQSAEVRIPILKKAGHLYVYCTRHGLQKYSGVFE" gene complement(1914497..1916533) /locus_tag="Dhaf_1790" /db_xref="GeneID:7258759" CDS complement(1914497..1916533) /locus_tag="Dhaf_1790" /inference="protein motif:PFAM:PF07728" /note="PFAM: ATPase associated with various cellular activities AAA_5; KEGG: aoe:Clos_1276 hypothetical protein" /codon_start=1 /transl_table=11 /product="ATPase associated with various cellular activities AAA_5" /protein_id="YP_002458272.1" /db_xref="GI:219667837" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7258759" /translation="MENRWILSPARQLTEEETSLVWQKPATHIESEAERRISAEVYRN WTRGEMKLTTILLEGDAGSGKTQLAKALSANFGLPYTKVTCFADMDKSDILGSILPVL PEDGNKAEAVTYNYYPSEIVQAYEKGWLLEIQEPTVIRDAAVLMALNSALEPEGSINL PTRIAHRHPDFIAVITTNRGYNGCRPLNEALRDRVQHSEKMDLPAVEVMMERGLAKTG CTDQELLLTFARAIVLLDQTAKANAIKGVAGMRSYFFWVDAVLQGSKTVEALYHKVIY KITTDPDEILILEQALAKQGMLAALEKVSQQSGRAQGEIMEIHAEGTMDAQFSAPAPD DMPAVALRKSADSEGHANDDGENTSSTQSSDQGENGNPIYHELQPTSPEELERQKRDF RKHLNQQAREMVKGSCHEKVNLIVHRPEATLAHRREYEQIASGLLPVIRELVRKTAPL LEHEVATEFGKSRLYGTKFHAEKLASPDFRCFSQKCPPNEEPSLAVALRIDESASMSA FGRLTAAKQAAVAVYEFCTSCGIPTLIYGDTADRSPLERMSLYSYIDYENPSLNDKYS LMAIQGHSNNRDGMALRILSEKLLQAPQKTKLLISISDGQPKALPDYTGEVALADMKE VIRDYSRQGIVFLAAAIGQDKETLCDIYGPERYLDITDLRQLPARLVQVIAKYL" gene complement(1916590..1917048) /locus_tag="Dhaf_1791" /db_xref="GeneID:7258760" CDS complement(1916590..1917048) /locus_tag="Dhaf_1791" /inference="similar to AA sequence:KEGG:Cthe_3111" /note="KEGG: cth:Cthe_3111 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458273.1" /db_xref="GI:219667838" /db_xref="GeneID:7258760" /translation="MNKDIVMTAEQYDLIDGRRAYRSDIKRLTLGAPIMADNQAMPIA AQVWKETTEGRLEISTELPLHQLIDLMILLSRTLLHFREAYRLPLLYDPEKPTVERLG VQGGVLSVAVCTENLDIREDIQKFSQALNDLGELTGERLRVLSRILEELE" gene complement(1917045..1917392) /locus_tag="Dhaf_1792" /db_xref="GeneID:7258761" CDS complement(1917045..1917392) /locus_tag="Dhaf_1792" /inference="similar to AA sequence:KEGG:Cphy_2913" /note="KEGG: cpy:Cphy_2913 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458274.1" /db_xref="GI:219667839" /db_xref="GeneID:7258761" /translation="MMDIKRKKQLLEEYKNRKPEMGVVSFRCTATGEAFLGIAKDTRA VFNSTRCKLSANGHPNQRLQELWDHYGESGFELSVLKVLKYEDPQADHTDELEALREQ CLAQDKQARRIWR" gene 1917842..1918882 /locus_tag="Dhaf_1793" /db_xref="GeneID:7258762" CDS 1917842..1918882 /locus_tag="Dhaf_1793" /inference="protein motif:PFAM:PF03480" /note="PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter, DctP subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter- DctP subunit" /protein_id="YP_002458275.1" /db_xref="GI:219667840" /db_xref="InterPro:IPR004682" /db_xref="GeneID:7258762" /translation="MKKVLGLVLTLALSLTFTGCASKTNNNGDSAMAGSNEKQIVMKI GHTQIEQSPRHAVSLKIKEYVEKESNGRIAVQIYPNSQLGNSKEQVEGLQTGSIEMVV FPTTSVTDFQPIFTLPDIPYLFPTDQEKLLKLYKSDAFKTFMAAGDDKGFKALATLFE GYATISSKIPVTEASQLKDMKLRIIGSNIAKTYYTNLGVPPNVIAFSEVYTSLQTGRI NSLDIPISQMYENKFYEVCENMTETKHFALTSLVMVNKSWYDALPEDLQKIIGDAAEM AAPEAANVVNATTEKARKDMPGVQFYQPTDDLVNQLKEQTGKMEEEYVKVNGEKGKQI LDGIKQAVQVLN" sig_peptide 1917842..1917913 /locus_tag="Dhaf_1793" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.383 at residue 24" gene 1918947..1919474 /locus_tag="Dhaf_1794" /db_xref="GeneID:7258763" CDS 1918947..1919474 /locus_tag="Dhaf_1794" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: chy:CHY_1302 TRAP dicarboxylate transporter, DctQ subunit" /codon_start=1 /transl_table=11 /product="Tripartite ATP-independent periplasmic transporter DctQ component" /protein_id="YP_002458276.1" /db_xref="GI:219667841" /db_xref="InterPro:IPR007387" /db_xref="GeneID:7258763" /translation="MGDTVKDSSRFQALISLDTIQTKLEKTVVSLGMISATLILFINI LYSAVSGSTLPWAAEITQYIMVWVIFIGASLLMRSTGHVTMDLIARFIPKKTVLYLDI FIYAVVCAFLTYLVYIGWNMTLDVYSTGQTMTTLNASMVWVYLGFPVGVLLMAINALK LVVIKLRQAIGGEIN" gene 1919471..1920757 /locus_tag="Dhaf_1795" /db_xref="GeneID:7258764" CDS 1919471..1920757 /locus_tag="Dhaf_1795" /inference="protein motif:TFAM:TIGR00786" /note="TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: abu:Abu_0361 C4-dicarboxylate transport protein" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctM subunit" /protein_id="YP_002458277.1" /db_xref="GI:219667842" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="GeneID:7258764" /translation="MTTGVFLVIMMIALLFIGFPVFIALAMPAALAIHLFITGVEPTI VVQRMISGVNSFTLLSLPLFVLLADIIARGVMGEKIINLTKEMVGHLKGGIAITVVLA SLVFGAISGSGTASMLALGSVFLVALRQGNYDDIFSYGLISTSSSLSSLIPPGVAMIL YATITGTSVQDVFLVGLSMGIVFGVILAAYGVFYAVKNKIPVTGKFNLKAFLKSLKEG FWTIIAPVLILGGIYGGFVTPTEAAALAVVYALIIEVFVYRSFKLKEIFSIAIESAKT STMILVLISAGTIMSWVMTIAQIPQTVGQLLLNVPDSMVLLIITLVFIILGMFIDGFS AMVIMVPILFPVIQRMGMDPALFGLLIVLNTAIGTNTPPFGIHIFAGVSKFNVSYITM VRALMPFVILSLISLLIFTYMPGVALWLPNLLKFFG" sig_peptide 1919471..1919551 /locus_tag="Dhaf_1795" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.960 at residue 27" gene 1920807..1921931 /locus_tag="Dhaf_1796" /db_xref="GeneID:7258765" CDS 1920807..1921931 /locus_tag="Dhaf_1796" /inference="protein motif:PFAM:PF00180" /note="PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bja:bll6321 3-isopropylmalate dehydrogenase" /codon_start=1 /transl_table=11 /product="isocitrate/isopropylmalate dehydrogenase" /protein_id="YP_002458278.1" /db_xref="GI:219667843" /db_xref="InterPro:IPR001804" /db_xref="GeneID:7258765" /translation="MKKYTIAVIPLDGVGKDVIPLGAKAMQKAQEILGGFELDCRYYE AGVEYAVKTGKMCEDNLGEDIAKADAMLCGSAGHYDADMSKSEYPGYKTGMQVLQFLR SGMGNSIGLRPLRLRKGIDCPLRNREEIDVLLVRQLAEGFYIRPGHMIGEDAAYDTIV VTRNVTEKFADTCFRLARGRHGRRQDGKKMVTLGNKHGNVTCFDFYRKIFTEVSAGYP DIGLQFTQVDALAEHLIKDPDRFDVIACENMIGDIIGDIGAYITGGMGITPTADVGGV TPQFRPNHGTFPRAVGKGFANPLASILTAGLLLDTLGNERGDDNLRRGARLIEKAVEY NLTTGGPRTKDLGGTANTFATAEAVFKAMEVVKICSKGER" gene 1921933..1923108 /locus_tag="Dhaf_1797" /db_xref="GeneID:7258766" CDS 1921933..1923108 /locus_tag="Dhaf_1797" /inference="protein motif:PFAM:PF00557" /note="PFAM: peptidase M24; KEGG: pab:PAB1637 cobalt-dependent proline dipeptidase" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_002458279.1" /db_xref="GI:219667844" /db_xref="InterPro:IPR000994" /db_xref="GeneID:7258766" /translation="MVKIEHNVRFQGRPAKAEMERRWQLAKEFMKERGLDYLVTQANE GVLCQYVRWFAEVRSLHYTYLLFDKDGAMTMISHGGTGGKAIPWEVGLTNNIAIPVFN NACYADSFAAEKAVEVIQKKGCRKLGLIGMNLITAGFYNNLLEGLPGTETVDVTDEFD YLVAVKSAEELGFLQDACDLHDAAAYAIPSLVYAGRMEREFGADLYRLALLMGADEYL SNLFVGSSRLAGPMFALHYQNKIIEAGDALNVLFEVPTMVGYYADLHRYFNVGAPAPE MLEVAAAGIELQDYLAKLCQPGVRGKEVFAACNDWLTRNGFDPEIRLCGHGQGYGLVE RPYFDAFDPMVLQENMYLAIHPTVKAKGASVQIGDNFVVTADGAKRMTKHPRGLTII" gene 1923158..1924492 /locus_tag="Dhaf_1798" /db_xref="GeneID:7258767" CDS 1923158..1924492 /locus_tag="Dhaf_1798" /EC_number="3.5.2.2" /inference="protein motif:TFAM:TIGR00857" /note="KEGG: chy:CHY_0678 allantoinase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3" /codon_start=1 /transl_table=11 /product="dihydroorotase, multifunctional complex type" /protein_id="YP_002458280.1" /db_xref="GI:219667845" /db_xref="InterPro:IPR004722" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7258767" /translation="MYDIQIINAKIQTEQGQIEGNITINNGKIEAISSSPLANVKQTI DAEGLLVLPGFIDQHVHFMDPTETDREDFIHGTTAAAMAGVTTVIEHTHSRPILTVED FLKYKSYIEERSLVDFGFAAHIWPGQYDQLEKLWQEGIAYFKVFTCTTHGVPGQNSAS LHGAFTKVASFGGRVLVHCEDDSLTAENEKVLKGNNRDDGHVIQEWRSKAAEAISVAN VCFIAKETGAHVTIAHLSHPDVVGIVQEAKEAGAKVLAEICPQYLYLEENTLAARGSF GKFTPPSRSARESQELMELVGKGELDILASDHAPSTKRHKDSGSIWTSPFGLPGIDTT SSVMLTAVNNNKLSLAGFVRMYAENPAKALGLYPKKGCIRVGADADLVLVDMKKKWTI QDDGICSKAKWSPFNGFQCTGKPVMTLLRGQIIMSEGKLLGKPGDGNYVKRA" gene 1924506..1925468 /locus_tag="Dhaf_1799" /db_xref="GeneID:7258768" CDS 1924506..1925468 /locus_tag="Dhaf_1799" /inference="protein motif:TFAM:TIGR01763" /note="TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: bha:BH3158 malate dehydrogenase" /codon_start=1 /transl_table=11 /product="malate dehydrogenase, NAD-dependent" /protein_id="YP_002458281.1" /db_xref="GI:219667846" /db_xref="InterPro:IPR001236" /db_xref="InterPro:IPR001557" /db_xref="InterPro:IPR011275" /db_xref="GeneID:7258768" /translation="MAKISVIGSGFTGTTTAFMLAMKGLGDIVLLDTQANENPTKGKA LDIMEAGPLTRSSVRVTGTSDYQDTLDSDVVVITAGIARKPGMSRNELCDINAGIVTH VVRQVVQHSPNSTLIILSNPVDIMTYVAFKESGFKRNRIIGQSGVLDSARFRYFVASE LKVSAEDVTGFVLGVHGDDMVPLVRYCSVHGIPIQQLLPEAEIEKIMERTRQAGSEIV NLLGNGSAYYAPAAALTEMIESILLDKHRVMPCIVHLEGELGYQDLVLNVPAVIGRQG VEKILPIDLLPEEEDLIERSVASIRRGIDAVLEGKTNKRCSLIS" gene 1925579..1927150 /locus_tag="Dhaf_1800" /db_xref="GeneID:7258769" CDS 1925579..1927150 /locus_tag="Dhaf_1800" /inference="protein motif:PFAM:PF00795" /note="PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpt:Rpal_3867 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /protein_id="YP_002458282.1" /db_xref="GI:219667847" /db_xref="InterPro:IPR003010" /db_xref="GeneID:7258769" /translation="MRLACLQVEAQAWQDSHQAWAEIRKSILEASQHHDLLIVPESVY PAYFLAPLDKPEYEEAVEKILAEIKEICQTTHTYIAFGYADKNENLASLFNPQGEEIA RKSKSNLWHFDRRWFKPGAEVVTADTEFGKVGLIICADARLPELVRSVALEKVKLIID LANLTASGPEIEKLSNAQIDYMLATRARENKVWLAVSDKWGVEADTVTYAGRSAVYSP EGTCVAQAPSHKNGIVSVEIPTDAQGEIQCAADEELPPRCPDLYGILTTETAKLPMYR YLTEPVIPEDLTPFVTVSSSLTDGGLKDARMTHVKRLLELEPNLIVLPTARGEEEVAP YQGLLADNQFIVVTDSTDGQTKSRLISNKGVLAGYRTTDSVPQQDVANPENQFPVVKD LPMGRIGFLHEQEMLLPEAARCLMLKGADAVLWQHGMSLAKAVPLARTRAAENRIFII AVYSGVLGNSADGASFIVDPSGSIIASTLLNKPLHATGAYCNFCNARMKSVVPGTHLV YDRKPSHYERLVKND" gene complement(1927219..1928907) /locus_tag="Dhaf_1801" /db_xref="GeneID:7258770" CDS complement(1927219..1928907) /locus_tag="Dhaf_1801" /inference="protein motif:PFAM:PF07905" /note="PFAM: purine catabolism PurC domain protein; KEGG: mta:Moth_0207 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PucR family" /protein_id="YP_002458283.1" /db_xref="GI:219667848" /db_xref="InterPro:IPR012914" /db_xref="GeneID:7258770" /translation="MITIQDVLNADVFQNYNVLAGENGLLREVTTITIAEVPDAAKWL RGGELVCSTAFFISNTGLEQSEWVESLIINGASALAIKTSRFLGVLPKSIIECANNHN FPIIELDHEVTWPAIIESFMDYVTNQRIKIMQLIEDVQRDLINLVLENNTIQTLVNKI SELVGNTIIIEDAKLNVIAVSNVEGDIQSNLDSPVFKARINEHFRQNVLKSNFYKAVK MGEKKEHLEINLTIPHSEKIRNYMFPIFSNKTIYGFISLLESQQIYSSTDLMVLKNSS TAIALQLMKQYLNQQTYRKKNLALIEDIIHGRIHTQIVFEYDFLNINLANPMVAVLMD YAEPNLENNYFWERSEDLITMTIRKHLYKHFNQVIIGNNGSLFTLLVSFQPNQIEKVN SLVKEAVEHALAELAKQFGEDKFSIGIGGAYPQPELVEKSFKEAKTALSVAKKCKIRR GNVLLFEEIGIHRIIFMVQDTAKIREFCDDLLLELKKYDEKNSDVLLETLHEFLLCDC VVKETAKKMFVHPNTVTYRIKKIKQLLKHDLALPEFKMAYLFALEANDFLKELF" gene 1929100..1929438 /locus_tag="Dhaf_1802" /pseudo /db_xref="GeneID:7258771" gene 1929489..1929779 /locus_tag="Dhaf_1803" /db_xref="GeneID:7258772" CDS 1929489..1929779 /locus_tag="Dhaf_1803" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: chy:CHY_2536 nucleotidyltransferase family protein" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002458284.1" /db_xref="GI:219667849" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7258772" /translation="MLDKNALEARLREYKPILEKRYSVKKIGVFGSYARNEQNEDSDI DLIVEFTRPVGFQFVELKLYLEEILNRKVDLVTPNALKPQIKENILREVSYQ" gene 1929776..1930120 /locus_tag="Dhaf_1804" /db_xref="GeneID:7258773" CDS 1929776..1930120 /locus_tag="Dhaf_1804" /inference="protein motif:PFAM:PF01934" /note="PFAM: protein of unknown function DUF86; KEGG: nth:Nther_1037 protein of unknown function DUF86" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF86" /protein_id="YP_002458285.1" /db_xref="GI:219667850" /db_xref="InterPro:IPR008201" /db_xref="GeneID:7258773" /translation="MIKRNYVMYLEDIIGCMEKIELYVGELSYEDFTKNSLVFDAVIR NLEVIGEASKSIPEETVSNYPDISWRSMIGLRNILIHEYFGVDSEIVWEIIKSDLPRT KPLIIQMLNELK" gene complement(1930270..1931128) /locus_tag="Dhaf_1805" /pseudo /db_xref="GeneID:7258774" gene 1931354..1932070 /locus_tag="Dhaf_1806" /db_xref="GeneID:7258775" CDS 1931354..1932070 /locus_tag="Dhaf_1806" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458286.1" /db_xref="GI:219667851" /db_xref="GeneID:7258775" /translation="MEDYPEFEEIQIGSVSCLGKEGVPVWGIIHYLEQTCLNHMKLTT VQRICELSARGIENYRFSVAASSAEIFPSESLLDSSFRDYVVMADNEKSPDSFWKVIS SYKRPVVFYNNGNRKIPLYDFTYPEAVRITSFTEQSPFQVDAKGVVGALIDLVYAGER EERARQIFLNEQIGQSARNIEAIVRASAVISNSNVPEGVRRYAEQQLINCLGSQAKLN EKVGINQVTIRLDGQIDVKG" gene 1932136..1932711 /locus_tag="Dhaf_1807" /db_xref="GeneID:7258776" CDS 1932136..1932711 /locus_tag="Dhaf_1807" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458287.1" /db_xref="GI:219667852" /db_xref="GeneID:7258776" /translation="MKRYRWMVLIIIAVLAVFFVWNNLYSQEALSKRIPFQKGFEITQ QDPVIDVNFVFQPAWIPEMDENETKQINHLVYQDYSSSIYLTSIFNHYDRNSDGGHII ASFEIKQNFNTKGGSYVSCYSVSERGFTPTIGRVTGYDNDHKLLEEDFGSVAGIGAGE TFSIYLKTGELLDSPINIKIESLNLIQYVKD" sig_peptide 1932136..1932216 /locus_tag="Dhaf_1807" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.722 at residue 27" gene 1933374..1934846 /locus_tag="Dhaf_1808" /db_xref="GeneID:7258777" CDS 1933374..1934846 /locus_tag="Dhaf_1808" /inference="similar to AA sequence:KEGG:BLi00343" /note="KEGG: bld:BLi00343 YcdC" /codon_start=1 /transl_table=11 /product="YcdC" /protein_id="YP_002458288.1" /db_xref="GI:219667853" /db_xref="GeneID:7258777" /translation="MPKKELLRIANSVVKIPDDYELTIEDYLESENAEGEAIFLWTGQ KRDEAISVHLDAQGNLTYLSIDRQEKEPAAIAMDEVEKRKCAEQFLCTHYPDAWKDLT FSKTKKLSHADRFYYEQIVMGLPLEHAGCYMDIDPLGEVVTFSSSYKGVRRIPEIPST LISKEKLKEHIGHTLQFRLKIHSLHSEVHDVEQGGLYLVYEPNAVFRKYRAANLCPET KMSSDEGEGEGETYVPLPTFSLKKVRRDLGIAEVVGITENLEMIREVDMGKERGIVWR DRNWQVMEKDLSMDGFFRRQTEDTVKAFVSKRSGKVRSFIWFMERKGDRQLTREECYT IAIEFLEWVIPEYFGFLQLTVPKAGDENEEQENWDDDIDDDIKEAFVFTAHNGHGIPV DSIVTVTVNRTTGLVDYYNGPDFDSEQLRQLPIKPALTEERAKEIFMSHLDFELKWDH NYGEEESDTLVYRLCDVKSRTPIRYIDAITGEVRHWKRNP" gene 1935109..1935930 /locus_tag="Dhaf_1809" /db_xref="GeneID:7258778" CDS 1935109..1935930 /locus_tag="Dhaf_1809" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: lsp:Bsph_4450 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458289.1" /db_xref="GI:219667854" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7258778" /translation="MEISLNEIIDYYAKADVSFVGAFGERVSPQLKVLDRHTNPAGGG LVIPFSGSACFTFDGKPYVIEPGMVVHAGPGMRLSKEVIGDREWEYAVIHYHIPQHER DEYPLFHKDFSLAHGRSAKVPHLVRQILDIQSIPGAAAKFQTKVLFLSLLQEIFTAAC GQPGQENSKLIEEAMGYIRLNYADELTVQKVADEFSVERRQFSYLFKRHTGMSPIHYL IECRISKAKELLGSPGCSVKQVAEWVGYTDSLYFSKAFKKYTGVSPSEYREGFAL" gene 1936075..1937061 /locus_tag="Dhaf_1810" /db_xref="GeneID:7258779" CDS 1936075..1937061 /locus_tag="Dhaf_1810" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: cbl:CLK_0087 putative ferrichrome ABC transporter, ferrichrome-binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002458290.1" /db_xref="GI:219667855" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7258779" /translation="MKKLRVLIVSISLMLGLLTGCGGAPANTNAEVPSENTPGTGEEA AWPRTYVDAVGNEIVLDKKPERIALLNFHNYEAIVALGQIPVAATDTETVYKGWGSLI PYAEKFEIIDVGATKAPNLEKLVEVNPDVILYIDSTQGAIVEDLKKIAPVIAVAGGPI PGYGENWSTWQGVIREYGMMLGEEAKAEAEIARLEGLLTDAKVKLAPYQDKTFVFIRL QEKDIYSWMPDFAFNPEKGIGLKSPYEKPGQLSLESLADLNPDFIILYDEITNTVDED KLADLNANSSVWQSLTAVKAGQVISVDRSSFSGGPLGMEIGIRALVEELTSK" sig_peptide 1936075..1936167 /locus_tag="Dhaf_1810" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 31" gene 1937156..1938874 /locus_tag="Dhaf_1811" /db_xref="GeneID:7258780" CDS 1937156..1938874 /locus_tag="Dhaf_1811" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3891 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458291.1" /db_xref="GI:219667856" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258780" /translation="MMIRRFLRYYSPYKGLFLLDVSCAVAAALLELFFPFTVQHIVDT LLPRGEWKLILGACILLGLIYIVNTVLKFVVGYWGEKLGLYIETDMRIEIYTHLQKLS FRFFDNHKQGQLASRITNDLMDIGNMAHYGPEHFLISTFTLAGAMVMMFHANWQLALP LSLFVMILLAINMHFMRRLVVTRKRMFGAVGGFLSRLEDGIGGIRVVQAFANEDHQKR LFVSDNQRFCEAKIDGFKNVAQNEAVTYMFISLLPVLALLGGSWFTLNGRMTGGELFS FILIANVMVMPIRMLAAFSVRFPNGMAGFKNFVEIIDTEPEIKDAPDAVEVSSLRGDI RYEQVSFGYREDSTVLNTIDLSVRAGETVAFVGTSGAGKTTLCSLLLRFYEADEGRIT IDGMDIRKLKLASLRQQIGVVQQDVFLFSGSIGENIRFGKLGATEEELWEAARRAQLD DFIREQPEGMDTLIGERGVKLSGGQRQRIAIARMFLKNPPILILDEATSSLDTLTESS ILQALAELAQGRTTLIIAHRLATIRHADRIVVLTEEGIAEEGGHEELLRKNGIYSNLH RAQVGA" gene 1938896..1939948 /locus_tag="Dhaf_1812" /db_xref="GeneID:7258781" CDS 1938896..1939948 /locus_tag="Dhaf_1812" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; ABC-3 protein; KEGG: cbf:CLI_0756 ferrichrome ABC transporter, permease protein FhuB" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002458292.1" /db_xref="GI:219667857" /db_xref="InterPro:IPR000522" /db_xref="InterPro:IPR001626" /db_xref="GeneID:7258781" /translation="MKHTKESAQLLKAGQDKKKGRTWAGSLIILGGTGLLILLMAFSI TKGAAEIPLSVIGDVLFRFDSMNTQHLIIVDLRLPRVIASAMVGAAFAVAGAIMQGIT RNPLADSGLLGLNAGAGFALSLCFAFFPGMGYMQVIFFSFLGAALGAALVNGIASMRR GGATPMRLVLAGAAVSALLIALSQGIALYFDVAQDIMFWTVGGVAGSNWVQIKIMTPW ILGALLGAMILSRSISLLSLGEEVAKGLGLNTLTISMLCSLIVVILAGASVAVVGAVG FVGLIIPHIVRYLVGVDYRWIIPSSAVMGALLMVLADLGARRLNPPFETPVGALIAVV GVPFFLYLARRQKRAL" gene 1939948..1941003 /locus_tag="Dhaf_1813" /db_xref="GeneID:7258782" CDS 1939948..1941003 /locus_tag="Dhaf_1813" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: cbf:CLI_0757 ferrichrome ABC transporter, permease protein FhuG" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002458293.1" /db_xref="GI:219667858" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7258782" /translation="MNTQLNIQQQKNELYKRKVARRHRMILAGCVALLLLSLLISMNS GYAKLTPLDTLRTLFGGGTGKENLILFSFRLPRIVISMLIGGGLALSGCIIQSIARNG LADPGLLGINAGAGLMVILYVMFFGAQSFLSIFTLPFLSLIGAGVTAVLVYILAFKKG EGIAPMRLVLTGVAVQAGISALTTLLVVKLDDTQFDFVATWQAGSIWGSNWNYVLALL PWLLLLIPYVMMKSRVLDVLNLGEDEACGLGVAVEQERRKLLAAAVALAASSVAVSGS ISFVGLIAPHLARRLVGPKHSILLPACVLVGGVLVAVADTIARVIVQPAEIPTGIVVA VIGAPYFLYLLAKSKTA" sig_peptide 1939948..1940091 /locus_tag="Dhaf_1813" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.988 at residue 48" gene 1941019..1941846 /locus_tag="Dhaf_1814" /db_xref="GeneID:7258783" CDS 1941019..1941846 /locus_tag="Dhaf_1814" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbb:CLD_0077 ferrichrome ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458294.1" /db_xref="GI:219667859" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258783" /translation="MNSIATECLAIAYEDKMVVDNLDMQIPQGKITTIIGANGCGKST VLKAVGRILKPKGGMVYLNGEDIRRLSTKEVAQKMAILPQSPQAPAGLTVGELVAYGR FPHQRGMGKLKAGDKKIIAWALEVTKLTELETTAVDNLSGGQRQRVWIAMALAQQTDL ILLDEPTTYLDLSYQLEVLQLLYQLNREQGCTIVMVLHDLNLAARFADYMVAIRGGKI IRHGTPEEVMTVEVLREAFQIEAMIIKESRTGRPTCVFYDLIDQQKQQKKVSGGTLT" gene 1941843..1942598 /locus_tag="Dhaf_1815" /db_xref="GeneID:7258784" CDS 1941843..1942598 /locus_tag="Dhaf_1815" /EC_number="1.18.6.1" /inference="protein motif:PRIAM:1.18.6.1" /note="PFAM: NifH/frxC-family protein; KEGG: ckl:CKL_2461 NifH3" /codon_start=1 /transl_table=11 /product="Nitrogenase" /protein_id="YP_002458295.1" /db_xref="GI:219667860" /db_xref="InterPro:IPR000392" /db_xref="GeneID:7258784" /translation="MKKIAIYGKGGIGKSTTVSNVSAAMAAMGLKVLQIGCDPKADST RNLTGGKNIPTVLDTLREQSDATLEELVVESSTGVLCVEAGGPVPGVGCAGRGIITAF EKLEELDAYTIYRPDVVLYDVLGDVVCGGFAMPIRGGYADEVCIVTSGEMMSLYAAAN ISHAVKSFGKRGYASLRGLILNAKNFAGEQELVDKAAAEIGAPVLYRLPRDPAVQQAE AQGKTVVEAFPDSEMAGHYRALAKHLLEGAAKV" gene 1942595..1943956 /locus_tag="Dhaf_1816" /db_xref="GeneID:7258785" CDS 1942595..1943956 /locus_tag="Dhaf_1816" /inference="protein motif:PFAM:PF00148" /note="PFAM: oxidoreductase/nitrogenase component 1; KEGG: ckl:CKL_2460 NifE2" /codon_start=1 /transl_table=11 /product="oxidoreductase/nitrogenase component 1" /protein_id="YP_002458296.1" /db_xref="GI:219667861" /db_xref="InterPro:IPR000510" /db_xref="GeneID:7258785" /translation="MKELKELKELKDLKELKHLKHLSSVKSGTGIKFLTPAVSPGSHC PMRIASVIVKDIQGLSSLLVGTQECATHSRLFNPHPEGRQGELHWLYTLSDQEVVFGC REGLRDALKKMDQAGARAILLIATCIPELIGEDMEGIIQEIQPELSARVTYVMLGQFK NVSHPPGSWKTMKALGLLMEKKATDLRRINVLGRAPEEDHIPEPSLLPELVRQGINLR YLAPGASLEDLQNAGDAALNLVLSPYTQPLAVQMQEELGIPYVSLHHRYAVKDIDQAY EDIAQRFGLSWGDAFAEERRRALALENQAQQRLDGLRFVCAPRVDLPIPLSVYLTGLG MEPLLLHLEEYYPEDKDHAGQLIARGQDPLVCRMVNEEAELPILQKLNPDLCIGYMSY TDIRIPCVANMMDYYGQVGYERTRSLLTRILGVAAKKENKESKENKENKEQGGMAYGT ASV" gene 1943937..1945169 /locus_tag="Dhaf_1817" /db_xref="GeneID:7258786" CDS 1943937..1945169 /locus_tag="Dhaf_1817" /inference="protein motif:PFAM:PF00148" /note="PFAM: oxidoreductase/nitrogenase component 1; KEGG: ckl:CKL_2459 NifE1" /codon_start=1 /transl_table=11 /product="oxidoreductase/nitrogenase component 1" /protein_id="YP_002458297.1" /db_xref="GI:219667862" /db_xref="InterPro:IPR000510" /db_xref="GeneID:7258786" /translation="MGLHRFKPVPSGRMGTLWTLATIKGAALVEFGCMGHMLYSGVTL KRAGVHDGCKLYSTHIDEADIALGGTGRLNHTLDHVLKQDRPRVIFLLPSAIPEVIGT DLPALCEELQGDYPDVRLLPFGYGGFAVNQHRGIQEALLLLAKTLPVTIEKTERPTFN IIGSCADLFRFQADAGEILRLMEGAFGMKAVCVMTSHTSVEEIESMGSAHINLVLRRE GEPAARHLQKRFGTPYLLGRPYGLEGTRLWLEQIAQLSGIPVDAAFLNQERQTARSQL APVIPHFRHITRSHPEEAMLSLGGHADVVKGILEFGCKELSLPQGTCWCDCPEMGSEE IPYFGEDQWSQVIGEHKKGLLMASGEALEWAGRNGDMQIANPDTKWRLHPYDPPLVGF RGAVHLVNLWSNEDGDDH" gene 1945153..1945392 /locus_tag="Dhaf_1818" /db_xref="GeneID:7258787" CDS 1945153..1945392 /locus_tag="Dhaf_1818" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH2229 AraC/XylS family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458298.1" /db_xref="GI:219667863" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7258787" /translation="MEMTTDEGENRAGKYEKGAPARFLAELRIQRAKDLLQTCSSVKQ VAECVGFSDNLYFSKAFKKQTGVSPSEFRQHLKKE" gene 1945620..1946357 /locus_tag="Dhaf_1819" /db_xref="GeneID:7258788" CDS 1945620..1946357 /locus_tag="Dhaf_1819" /inference="protein motif:PFAM:PF02661" /note="PFAM: filamentation induced by cAMP protein Fic; KEGG: hpa:HPAG1_p002 hypothetical protein" /codon_start=1 /transl_table=11 /product="filamentation induced by cAMP protein Fic" /protein_id="YP_002458299.1" /db_xref="GI:219667864" /db_xref="InterPro:IPR003812" /db_xref="GeneID:7258788" /translation="MKQRLLARLLEEKEMKLKGGLYHRTQIKLAYNSNRIEGSHLSEE QTRYIYETNTITMEPNEAASVDDIIETVNHFFCFDYMLANVDGELSEGMLKEFHRLLK GRTSDERKEWFRVGDYKTRPNMVGDMETTAPSEVGKLLSDYHDKEKVTIEDIVDFHHR FESIHPFQDGNGRVGRIIMFKECLKHDIMPLIIDHEHKVFYYRGLKEYKREKGYLRDT CLSAQDQYAAMAAYFYPDIIQPGQDIN" gene 1946570..1946752 /locus_tag="Dhaf_1820" /pseudo /db_xref="GeneID:7258789" gene 1947889..1949397 /locus_tag="Dhaf_1821" /db_xref="GeneID:7258790" CDS 1947889..1949397 /locus_tag="Dhaf_1821" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter)" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002458300.1" /db_xref="GI:219667865" /db_xref="InterPro:IPR001898" /db_xref="GeneID:7258790" /translation="MNKNKPVTEVVESEGEVSTKKHIYSLIGFVIVAVFWIMPPIEPL TPLGMKVAGTFFAMIVWWSTVGAIWPSICGLLLIGLSGYAGGGAEGFTSVFTSAFSNN VVLLVMFAMVLFGAFAASGAPKYIARWVLTRKVINGRPYVFMAFVFLIGFFMAGFTSS VATLIILWPITLRLMEALEVDSDDEIWAYFFVGLFLMINFGRPIFSYKGTIAALLGTY NELSGSTDPAIFLQFMILLTIMGLLFLAAYLLVLKFMVRPDVSKLRGVSVEKMAAEQQ LPPIELPQKLYLWMIPIYIFMLVAPSVLPNTNPIGAFLETIGPLGVTVFWVVFFNIVH FQNRQLLEYKEVAAKYFNWGVFFMVPASLYGANALTSDATGFKEFLTQILTPILGGQS EILFIAILFAFALFISNFANNTAIALIMMPIFFVFCEQMSLNPKPGAMILSAIVFVTM LTPGASPQAALMFARRDIYKTKDIVRIGFPVSVIALLFYIFIGYPLAKILFL" gene 1950001..1951425 /locus_tag="Dhaf_1822" /db_xref="GeneID:7258791" CDS 1950001..1951425 /locus_tag="Dhaf_1822" /inference="similar to AA sequence:KEGG:Dred_0361" /note="KEGG: drm:Dred_0361 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458301.1" /db_xref="GI:219667866" /db_xref="GeneID:7258791" /translation="MGQPSIHPTGVTIYDPEKAWSGYTIMPVAGVGAVLIDMNGNVIR NWVNLQGFPNKLLPGGQVFGHLGIRDTAFGYQDQTDLVQVDWDGNVVWKFDKKEYIED SAYEPRWMARQHHDYQREGNPVGSYVPGMECSLDDGNTLLLCHETIYKKRISDKRLLD DCFIEVDWEGNILWSWRASDHFKEMNFSEAAKNALYRNPNMLKNGGGMGDWLHINSMS YLGPNQWYDAGDERFHPENIIWSAREANISAIIDKKSGAIVWQMGPDFFATKELRRIG QIIGQHHVHMIPRGLPGEGNILVFDNGGWAGYGLPNNTSFDGVKVNIMDRSRILEIDP VTMEVVWSVTASKLGYGRPGILDYRFYSPLGGSAQRLPNGNTLITEGVGARLFEVTPE LEIVWEYWAPFEAKVDYIYRAYRYPYSYVPQVPIPMETPIPRLDNRRFRVPEAAACTV ENVVDVAGTTGYAKKMDMCVSNLK" gene 1951442..1952875 /locus_tag="Dhaf_1823" /db_xref="GeneID:7258792" CDS 1951442..1952875 /locus_tag="Dhaf_1823" /inference="similar to AA sequence:KEGG:Dred_0607" /note="KEGG: drm:Dred_0607 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458302.1" /db_xref="GI:219667867" /db_xref="GeneID:7258792" /translation="MGYSFVHPTGVTLYNPEKAFNGYTLMSIRELGAGLIDMNGNVVR LWKDLHGFPNKLLPGGYVIGSLGIRDPAYGYQDQTDLVQVDWEGNVVWKFNRLEYIED PDNKPQWMVRQHHDYQRDGNPVGYYIPGMECRTDGGNTLILCHENLFNTKISEKRLLD DCFIEVDWEGNILWSWRASDHFEEMNFSDAAKNAMYRNPNMLENGGGMGDWLHINSMS YLGPNQWYDAGDERFHPENIIWDGREANISAIIDKKSGVIVWQMGPDFSATKELRRIG QIIGQHHVHMIPKGLPGAGNILIFDNGSWGGYGTPSNVSKDGIKADHADRSRVIELNP VTMEVVWQLTASELGYKPAGIFDYRFYSPLTSSAQRLPNGNTLITEGTGFRVFEVTAD HEVVWEFWSPFTNAVAPTVYRTYRYPYSYVPHLAKPQETPIPRLDIKTFRVPGAAAGQ LANQIKVAGTTGYGDKQELCVSFGEEL" gene 1952913..1954427 /locus_tag="Dhaf_1824" /db_xref="GeneID:7258793" CDS 1952913..1954427 /locus_tag="Dhaf_1824" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter)" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002458303.1" /db_xref="GI:219667868" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7258793" /translation="MNNSNKLNKEVVDSKAGMPLNKTHIYTLIGFIIIAVFWVMPPIE PLTPMGMKVAGTFFAMIIWWSTVSTIWPSICGLLFIGLSGYAGNGAKGFTSVFTSAFG NNIVLLVMVAMVLFGAFTASGAPKYIARWILTRKILNGRPYVFMALVFAAAFFITGVT SAVATLILMWPITLRLMEGLDVNSDDQIWPYFFVGLFLVINFARSVFPYKGVMVAILG TYNELSGNADPIIFVQFMVFLTIMGFLFTSLYLLGLKFIIRPDVSKLRDVSVEKLAAG QELPPIGLPQKLYLAMIPIYIFMLMAPSVLPTSNPIVAFLETIGPLGVTVFWVVFFSI VHFQNRQLLEYKEVAAKHFNWGVFFMIPSSLYGSAALASDATGFKDLLIQILTPFLSG KSELLFIAILFTFAVFISSFANNAAIALLMMPIIFVFCEQFGIDPKSAAMVLSAIVFL AMLTPGASPQAAMTFGNKDIYKTKDILRIGFPVTVIALLLYIFIGYPLAKILFL" gene 1954511..1954837 /locus_tag="Dhaf_1825" /db_xref="GeneID:7258794" CDS 1954511..1954837 /locus_tag="Dhaf_1825" /inference="protein motif:PFAM:PF00085" /note="PFAM: glutaredoxin 2; Thioredoxin domain; KEGG: cbe:Cbei_3329 thioredoxin domain" /codon_start=1 /transl_table=11 /product="Thioredoxin domain protein" /protein_id="YP_002458304.1" /db_xref="GI:219667869" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR008554" /db_xref="InterPro:IPR013766" /db_xref="GeneID:7258794" /translation="MPIQQLDFDSFEEIIYDEGEPCLVVYSRKSCHVCKEVVPEIEEL APKYKGEFGFYYVDVEEDQALFQRFSLKGVPQILFFNDGEYKGKMAGKAEGDQIEEKI AEVMKG" gene complement(1954955..1955938) /locus_tag="Dhaf_1826" /db_xref="GeneID:7258795" CDS complement(1954955..1955938) /locus_tag="Dhaf_1826" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002458305.1" /db_xref="GI:219667870" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258795" /translation="MRLEQLRYLVEISHTRSITIAADNLFMSQPSLSIAMSSLEKELG VKLFIRSKTGVTPTAVGAEILELSQDALMKIEKIYVVASKEQKTEQLNIRALPAINCG IMPKALSKFQNSHPSIRTYVREDKTQTILSTLFQQGKDKTRNFGIVSISDAVNALFED RFAESGVAKEYLCSDEQVCFVGAAHPLAEKKQITQSEIHKLPKIRYQYYENEPNDYYA SLIRSTNDKSFQSMYTTEPVLTVGTVDSLKKLVAENLGVAIMPSILAYGDNYFQSGQL KILKFSDITIPMHYYIVYKAKYPLNPIEKAFIHYVKEVFQEFNDMRAQFEI" gene 1956257..1956898 /locus_tag="Dhaf_1827" /db_xref="GeneID:7258796" CDS 1956257..1956898 /locus_tag="Dhaf_1827" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dth:DICTH_0565 trimethylamine corrinoid protein 2" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002458306.1" /db_xref="GI:219667871" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258796" /translation="MTKIKEIAKAVAGGKIKVVPGLVQQALDEGIAANEIIGGMTDAM NEVGQKFSAGEIYVPEMLVAAKAMKAGVEILKGKMTEGEGAKAGKCIIGTVAGDLHDI GKNLVAMMIESAGYEVIDLGVDVPADKFIETINANPDCHVVACSALLTTTLESLKNTV AAITAAGLRNQVKILVGGAPVRQSYADHIGADGYASDAPGAARKVKEMYTCFS" gene 1956996..1957991 /locus_tag="Dhaf_1828" /db_xref="GeneID:7258797" CDS 1956996..1957991 /locus_tag="Dhaf_1828" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ote:Oter_2886 uroporphyrinogen-III decarboxylase-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458307.1" /db_xref="GI:219667872" /db_xref="GeneID:7258797" /translation="MTITPRENMLLVYQHKVPEFLPLMKDIQYIRTVEPGFLHVVYEG KATGSNDAVDWFGQNWKFEPKIGAFNPDATQYIVKDITKWKEYVNIPDVEEIDWEAKF STDAISLDRNKFIIVKDGQGPWERAFSMTPIADLLCDLIIEPEACYEFFGIIADHKIK LHNHYIKYYKPDALCMHDDYGSGQGLFMSPDTWRQLIKPHLQRIIDNVTSQGVMYEHH CCGVMAPLAEEIADMGASSWNVVHVSNNTYACKQKFGDKLALVGGICDGQFLDLAGMT AEEICAHVREVADKMLPGVGTVISVKTVAHPERTKIIEDELLKYGQSFFKVKRPS" gene 1958305..1958688 /locus_tag="Dhaf_1829" /pseudo /db_xref="GeneID:7258798" gene complement(1958751..1959239) /locus_tag="Dhaf_1830" /db_xref="GeneID:7258799" CDS complement(1958751..1959239) /locus_tag="Dhaf_1830" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458308.1" /db_xref="GI:219667873" /db_xref="GeneID:7258799" /translation="MRIYREFGPKSASPGVSLPDSNPDSNLSFSQAVILLGIPAEERE EFLACHDVENMSKRELQAAVQEKKQSTELVPVVKITPKLRKIQPKTVQPTAETYTESM KHDEQFALHRDNLISAYSELLKTLVAQSRIDTTRKEVNQKKALGNCDQHGCDTAGISP RD" gene complement(1959504..1960400) /locus_tag="Dhaf_1831" /db_xref="GeneID:7258800" CDS complement(1959504..1960400) /locus_tag="Dhaf_1831" /inference="protein motif:PFAM:PF03466" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: amt:Amet_4432 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002458309.1" /db_xref="GI:219667874" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7258800" /translation="MNYLRLKYFTVIAKHLNFSKAAQELYISQPALSKHIMELEKHFG TALFVRTNRNLILTAAGKVLLSEAEKIFAREPEVFHLVKEASAKEAGKLSIAFVSTSL SFHIPLLVKHYNQDYPMVDVSLQRLPWGKVEHAVINNQADIGFIISFDDHYLPFLDSH VLTRTYSAIVAAHDHPLATQDKVHISQLKNEHFIQVSPSTQPIPYNYIILLCENAGFT PNIATTCPLVETVLMMVQAGLGISVLSRLAPVKGMDNLKFIDIEGVTPSSFSVVWKKD SNNPYLERFINRIKQYQWPEFV" gene 1960541..1961587 /locus_tag="Dhaf_1832" /db_xref="GeneID:7258801" CDS 1960541..1961587 /locus_tag="Dhaf_1832" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: bra:BRADO2388 putative metal-dependent hydrolase; putative amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_002458310.1" /db_xref="GI:219667875" /db_xref="InterPro:IPR006992" /db_xref="GeneID:7258801" /translation="MIIDINMHHLPEDLFTNEKILDGFLSTAPRSYGEIASLGTIPET GKRQIILEKPKGYQNLNYVEGDYSLEAKLQAMDDNGVDKAILRVPVWQEWLKVDTCKI VNDNAAEMCKRSAGRLYATACVPPWGGKDNLYELERCVKDLGMVGVQLACHYGQLYLD DEAFKPYMKVLNELNVPVVVHHTPLPVYWQSVYEYTNLRRELGRIIDQATAVGRELFS GMFEEFPNLKFIHTMFGGNWFANYNLLMPHKGKKEEAMLRLDISESDRIKMYLKNNIY FDMTHPASWGKDQVECAIKVCGADHVLFGSSFPVFYNWMSQGIECVKSLDITEKEREL ITSGNAIRLFKLDV" gene 1961620..1962765 /locus_tag="Dhaf_1833" /db_xref="GeneID:7258802" CDS 1961620..1962765 /locus_tag="Dhaf_1833" /inference="similar to AA sequence:KEGG:Amet_2095" /note="KEGG: amt:Amet_2095 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458311.1" /db_xref="GI:219667876" /db_xref="GeneID:7258802" /translation="MIQLKQERNQLFTDIYDGLKPKRIPIRIQVTHEAAIQYCKMDLK HTQWDKTAYFSFMDKVSAQLETDLTPVSMNVRTPAYYQILESEAFVMSSSGVLQHPEV KSMEAKEYDEFIEDPYSFILTKALPRVYKGFGGDPVRKSLNLAKAMAAYEDYKKAQLV AMSKINEKYGYAHLPIGGVTEAPYDFLADVLRSFTEISKDIRRCPDKIAEACDAVLPY LQRCAVSPMSSNYNRTMIPVHMPPFMNTKQFEKYFWPSFKQLVQFIYERGSNCWLLLQ GDMVRYIDYINELPGNPEVRHEYGDMKEVLERTNKKHIISGLYPVTMLETSSEKECMD YARKTVEILGQNGNYIFNFDKPILSLDENSMQNLRAVIATVRKYGEY" gene 1962781..1962927 /locus_tag="Dhaf_1834" /db_xref="GeneID:7258803" CDS 1962781..1962927 /locus_tag="Dhaf_1834" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458312.1" /db_xref="GI:219667877" /db_xref="GeneID:7258803" /translation="MESMIRSKYYTPWEEYQEKYPIIADIENVCTLQDYEDAVMMFVF RLFY" gene 1962965..1963603 /locus_tag="Dhaf_1835" /db_xref="GeneID:7258804" CDS 1962965..1963603 /locus_tag="Dhaf_1835" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2093 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002458313.1" /db_xref="GI:219667878" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258804" /translation="MIDLKELTAAVGALEEEKVFAMLGEFLKTNPSQEETQKVVAACQ GGMAVIGDLFEQGEYYVGDLVFAGSLLTDIIEKLKPSLGSATGKEIASILLGTVEGDL HDIGKNIFRCMAEAAGFKVIDLGIDTPAEEFVAKVRENKPAIVGMSGVLTLALESMRT TVQALEAAGLRKDVKIIIGGNPVTQEACEKIAADAFTTNAAEGIKICQGWVS" gene 1963655..1964821 /locus_tag="Dhaf_1836" /db_xref="GeneID:7258805" CDS 1963655..1964821 /locus_tag="Dhaf_1836" /inference="similar to AA sequence:KEGG:Amet_2087" /note="KEGG: amt:Amet_2087 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458314.1" /db_xref="GI:219667879" /db_xref="InterPro:IPR000630" /db_xref="GeneID:7258805" /translation="MSEKLNLYEERVRRVNDAIELREPDRVPVLSQIDNWALSYYGIT LENALKDVEQEYQAYSKPFTDFSFDGAIFGGVTFPLNFVYSLGGGIYNNKMDTIQIAT GHAELMGADEYDLLIADPIKFIRDTLLPRKHKIFQEGTVQEKFSKYAQAVGAFMQYVQ TRGMLSERYKQEHGFPVFNNGACSCMATDAIMNYLRDFKGIMQDIKRCPEKVAEASDV LVDLMIKKTFGTAPQPADDRYVQLFLHLPQFIRAREFEKVYWPSFKKYVDAVTGRGHK IVILFEKNWEHLYEYIQDLPKGKILGFFEEDDLRKAKRALGKTMCIAGGLKTNDLGYG TREHCLDVVKGLIDDLAPGGGFILTTDKGLMSPNDAKPENLRAVTEFALQYGSY" gene 1964862..1965017 /locus_tag="Dhaf_1837" /db_xref="GeneID:7258806" CDS 1964862..1965017 /locus_tag="Dhaf_1837" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458315.1" /db_xref="GI:219667880" /db_xref="GeneID:7258806" /translation="MLDSMPNTIVEKSDMEQVMELARETIFSKFLPTEQAQEGMELGM ILAMLFC" gene 1965081..1965893 /locus_tag="Dhaf_1838" /db_xref="GeneID:7258807" CDS 1965081..1965893 /locus_tag="Dhaf_1838" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002458316.1" /db_xref="GI:219667881" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7258807" /translation="MIIIGEKINGTIPSVKKAIEARDEDFIRGLAIKQAEAGADFIDV CASTAPEAETETLLWLMDIVQDVTDTPLCIDSPNARAIERVIHHAKRPGLINSISLEG DKCEVIFPLMQNSGWQTIALTCNNAGIPKDVQTRVDIAKEIIEKAEDYGIAPDRIHMD PLVIALSADNQSLLNFAETTRKIKELYPTINVTSGLSNISFGMPLRKVVNQNFLTLAV FAGMNSAIMDPLDRDLMAALLAAEALLGQDQYCRKFANAYRKNKIGPLRIAE" gene 1966332..1966586 /locus_tag="Dhaf_1839" /db_xref="GeneID:7258808" CDS 1966332..1966586 /locus_tag="Dhaf_1839" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pha:PSHAa1571 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458317.1" /db_xref="GI:219667882" /db_xref="GeneID:7258808" /translation="MNVQENAQVKVGQFINKRTLFISVCMALTFSMVMSFVMAIVNVG FTDILLRVWLTRWPIGFLTALPLSLFLPRLFNGLADKLNL" sig_peptide 1966332..1966451 /locus_tag="Dhaf_1839" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.815) with cleavage site probability 0.771 at residue 40" gene 1966886..1967269 /locus_tag="Dhaf_1840" /pseudo /db_xref="GeneID:7258809" gene 1967270..1968562 /locus_tag="Dhaf_1841" /db_xref="GeneID:7258810" CDS 1967270..1968562 /locus_tag="Dhaf_1841" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_3004 predicted sensory transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458318.1" /db_xref="GI:219667883" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258810" /translation="MFKKLRNRFLILNMVITSLVMLVAFSAVYLTTANNMHTENQRKL NSMSMSLMVSSENAPEQPESGRMINMVSADYSPSFTLIVDKGGSIVNIDTIMDLPAET FAEAAAAAWQKGGQSTVSLSGRLWLYAVTQLSVTELYEDGRSVTKTSDDNYKISFLDI TDTQKTLRDLLLTFVLVGFVMLAVIFLISLYFANRSIQPIAAAWEKQRQFVADASHEL KTPLSIITANYDALLSNQDETIRSQHEWLDYMKIGTDRMAKLINDMLTLARMENAGVE VSRAPFDLSDTLSRDMASMAAAAAEKGLTLSKAIEGGIVINSDREMIRRVLAILLENA IKYSEPGGEILVSLEKSRYGVICSVRNSGKGIAPKDLPRIFDRFYRADKSRTGENGGY GLGLSIAQTIIRRLGGDIMAQSVENEGTVFTFTLEEAR" sig_peptide 1967270..1967350 /locus_tag="Dhaf_1841" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.724 at residue 27" gene complement(1968828..1970156) /locus_tag="Dhaf_1842" /db_xref="GeneID:7258811" CDS complement(1968828..1970156) /locus_tag="Dhaf_1842" /inference="protein motif:TFAM:TIGR00797" /note="TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cdf:CD2108 putative drug/sodium antiporter" /codon_start=1 /transl_table=11 /product="MATE efflux family protein" /protein_id="YP_002458319.1" /db_xref="GI:219667884" /db_xref="InterPro:IPR002528" /db_xref="GeneID:7258811" /translation="MAKDMTQGSLVKVLVKFSLPLLLSGLLQQLYNWSDAFMVGNVEG ELSLAAIGSTIPISNLIIMMITGFSLGISILSGHLYGSGEHSELKKVLSSFTVVLSGV FLFVVVGGIIFMKPLLQLLQTPEDIFSIANSYLWIILLGMPFLVVYNVYSTVLRGMGD SKTSFLAIVVSSVINVLLDILFVVILHYGVIGAAVSTLIAQVLMAVFMVCYSTKKYPI MRFRIEKHCLDGSILRRGLSLSLPTAMQSSVHSVGNLLLQNLMNGFGTQTVAAITTAY RVDGVIMLPIINLGYGISTVVAQNTGAGNHQRAKRGVFVGMGIIAAVAIILTAAVIPT GGALVSLFGVTDESAAIGRTFFNIIAPFYLVFGIAIAIRSFLEGVGDVLFTSIASIVA LGIRIILTYTLAAPYGNSIIALAEGLSWGALLLMCFMRFVWKHRKSASKG" gene complement(1970424..1970648) /locus_tag="Dhaf_1843" /db_xref="GeneID:7258812" CDS complement(1970424..1970648) /locus_tag="Dhaf_1843" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ppu:PP_1944 aminomethyltransferase, putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458320.1" /db_xref="GI:219667885" /db_xref="GeneID:7258812" /translation="MRKRQNSAYFHRMISICCLDTAYTELGTEVLVLWGEPGTRQKKI RTKVARYPYNNVLRNESTDVAALPKAQPLK" gene 1970765..1971217 /locus_tag="Dhaf_1844" /db_xref="GeneID:7258813" CDS 1970765..1971217 /locus_tag="Dhaf_1844" /inference="similar to AA sequence:KEGG:Nther_1023" /note="KEGG: nth:Nther_1023 putative transcriptional regulator, PucR family" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, PucR family" /protein_id="YP_002458321.1" /db_xref="GI:219667886" /db_xref="GeneID:7258813" /translation="MSKLGLHCGCSHIFDRFSELRYYYIQSKAALYEGEKGSPENILW NFGDYYFADLIGALDNSTSLKSLCHPNILRVHEHDNIYGTDFVRCLRTYIFNGCNIAQ TGKELFMHRNTHAYRLEKIAETIAMDVQQLPENQRMQLWFSCRISCVL" gene 1971359..1972195 /locus_tag="Dhaf_1845" /db_xref="GeneID:7258814" CDS 1971359..1972195 /locus_tag="Dhaf_1845" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cac:CAC3359 nitroreductase family protein" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002458322.1" /db_xref="GI:219667887" /db_xref="InterPro:IPR000415" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258814" /translation="MWMKIMVNIDSEKCIGCGLCVRDCFPGKIVIVEGKAQIKNKQCM QCGHCIAICPQDAVSMIEYNMAEVKAYDRREFSVDADILLNFIKYRRSCRQFIDKEVE EEKISKIIEAGRYTQTGSNLQDVSYIVVREGLQELTALAIESLKETGEALLANPAPQT LGLKRYAELWLKMYEGFQANPQENDRLFFNAPAVIIVTANSEVNGVLASSNMELMTNA LGLGTVFSGFFIRAAQDNQRILDFLGIKEGKKIVTCMVIGYPAVRYFRTVPRKEADIS WK" gene 1972281..1972541 /locus_tag="Dhaf_1846" /db_xref="GeneID:7258815" CDS 1972281..1972541 /locus_tag="Dhaf_1846" /inference="similar to AA sequence:KEGG:Nther_1023" /note="KEGG: nth:Nther_1023 putative transcriptional regulator, PucR family" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, PucR family" /protein_id="YP_002458323.1" /db_xref="GI:219667888" /db_xref="GeneID:7258815" /translation="MEFPEKKAIILNALIERHGLQHIVNVASEVMGNPVFVYDISWKI LARSNSRAEDEETWAVLFPDGHLVFDDLMKVEKAGNICAIIE" gene 1972890..1973285 /locus_tag="Dhaf_1847" /db_xref="GeneID:7258816" CDS 1972890..1973285 /locus_tag="Dhaf_1847" /inference="similar to AA sequence:KEGG:PP_1944" /note="KEGG: ppu:PP_1944 aminomethyltransferase, putative" /codon_start=1 /transl_table=11 /product="aminomethyltransferase, putative" /protein_id="YP_002458324.1" /db_xref="GI:219667889" /db_xref="GeneID:7258816" /translation="MVHLIWDKVDVLKVIATAFEAGNSCDIMDMVGDYDYVRNNGGMH IDAVYDGDRMIGASSGRMLSAKTREMLSLCTIDQDYAVEGKVVEVLWGNPGTRQMRIK AKVMLLPYIKEDRNENFDVERIPRPVFKK" gene 1973534..1973668 /locus_tag="Dhaf_1848" /db_xref="GeneID:7258817" CDS 1973534..1973668 /locus_tag="Dhaf_1848" /inference="similar to AA sequence:KEGG:Moth_0617" /note="KEGG: mta:Moth_0617 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458325.1" /db_xref="GI:219667890" /db_xref="GeneID:7258817" /translation="MVPRPKEVKALENYCLQVFFENGETKIYDMPALLEMPFYSKLKN" gene 1973809..1975611 /locus_tag="Dhaf_1849" /db_xref="GeneID:7258818" CDS 1973809..1975611 /locus_tag="Dhaf_1849" /inference="protein motif:PFAM:PF02368" /note="PFAM: Ig domain protein group 2 domain protein; putative cell wall binding repeat 2-containing protein; KEGG: cbb:CLD_0372 amidase domain-containing protein" /codon_start=1 /transl_table=11 /product="Ig domain protein group 2 domain protein" /protein_id="YP_002458326.1" /db_xref="GI:219667891" /db_xref="InterPro:IPR003343" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7258818" /translation="MTMERMPLTQSDKGSRCDIFYEEKIKMEGEFVMSMRKIITGSLL ILAFVFTFCFPAVTMADTSPTVIRLAGYDRYETAAEIAKSGWTKSDYAVLAYGENYPD ALAAVPLAYKYDAPILLTKSNSMPEVTKRVISGLQVKNVIIIGGTGVIYASVEEELEA MGIDVNRVFGCDRYETAVEVAKQITAAQDSLELFVVTGEDYPDALSVGSIAGFKQMPI IMVPSDGVPDSVKNYVSSANVNKSYVIGYSDVVSDLVYNEFPKAERILGVDKYSRNIA VNQRFENEFKSEKICLATGEVFADALSGGAYAAKIGEPVILVNNDPPDNTKSYYQQRA AKANKVNVFGGTGIVPERVIENLNQGSTVWSDSVYPTGVSLNKSILNIPAGGSETLTA LLETSDASGNPVYGNSGNVTWSSSNPAVATVSDSGKVAGLKEGTTVITVTVKNGGKTA SCNVGVYNNASFGNNLDFDKFELTISDLKIGATEATFKFQLLKNGEDITELVTLRADA FAPKREVKDEILPVTLDSLEETLKERATMQGKLPVTLNYSEKKGTIKFEDPSDGERLR WIYLYYEYNENGPWKGLLGTSYDCWKDGKQILSD" gene 1976141..1976473 /locus_tag="Dhaf_1850" /db_xref="GeneID:7258819" CDS 1976141..1976473 /locus_tag="Dhaf_1850" /inference="similar to AA sequence:KEGG:Teth39_0905" /note="KEGG: tpd:Teth39_0905 glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_002458327.1" /db_xref="GI:219667892" /db_xref="GeneID:7258819" /translation="MEELLGLEFYGPLDDSGPGLAVALPRRGEPELVAPTRSNDAIGA TRLLERKGEGITGIAFRVDDIEEAERHFVERGLKPDVRINHSGMKEILFLAQEATHGI EIAIIVPP" gene complement(1976505..1977236) /locus_tag="Dhaf_1851" /db_xref="GeneID:7258820" CDS complement(1976505..1977236) /locus_tag="Dhaf_1851" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458328.1" /db_xref="GI:219667893" /db_xref="GeneID:7258820" /translation="MDVELSARTPTQIASEINLIKSRTDKIMLQSCVQIGRCLTEAKA MLPYGEWGEWLKEEVSYSQRTANHLMRIYREFGSKSASPGVSLPDSNPDSNLNFSQAV ILLGIPAEEREEFLACHDVENMSKRELQAAVQEKKQSTELVPVVKVTPKVRKIQPKTV QPTAETYTESMKYDEQFALHRDNMISAYSEMLKTLVAQSRIDTARKEVNRKKALEIAT NMVATLQEYPPAIRTNLSVKTTNPE" gene 1977427..1977585 /locus_tag="Dhaf_1852" /db_xref="GeneID:7258821" CDS 1977427..1977585 /locus_tag="Dhaf_1852" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458329.1" /db_xref="GI:219667894" /db_xref="GeneID:7258821" /translation="MKPSEAMVRFFITGTAEKCTVEEFPLQRKKNEKNNIIIGCLCTG WDIDFTGD" gene 1977700..1978422 /locus_tag="Dhaf_1853" /db_xref="GeneID:7258822" CDS 1977700..1978422 /locus_tag="Dhaf_1853" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cbl:CLK_0779 Crp/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002458330.1" /db_xref="GI:219667895" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7258822" /translation="MFDNNDSPWIKGDQKRFENILKFHGICKTKVYSASETIYIQDDP GDTFFYVKSGRVKVYILKGDGSEKTLSIHEQGGFFGETSAIDLFPRPCCASAMISSEI IALTQEELKKLLKFDADLYFIILQSLTRKIRMLSFQIQEMAFLEAEQRIIHMLLRLTA DFGTTTQDGISLSIKFSDQELAGLVGACRTTVTKTLNSLKKQGFIDKQYRNIIIKNQI GLLEYLYGHKANEKALNLSDCI" repeat_region complement(1978652..1980511) /note="ISDha9" gene complement(1978735..1980333) /locus_tag="Dhaf_1854" /db_xref="GeneID:7258823" CDS complement(1978735..1980333) /locus_tag="Dhaf_1854" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: acr:Acry_3379 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS1634 family protein" /protein_id="YP_002458331.1" /db_xref="GI:219667896" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7258823" /translation="MFARIKTAYNRDGSPRRYLQLVESRREEGKVRQKVLCNLGRVED LQNGKLDDLIRSLAKFSDTLAVVDAAEDLFADWSKEFGPSMVFRRLWENLGLHTILDG LFNERDLSIDVQEAIFCMVLNRLTEPTSKLGVSDWKDSVYRPEFESLKLHHFYKAIDF LDENKDTLEEQLFFHHTNLFTQQLDLVFFDTTSTYVEGDAGAFDLLEYGHSKDHRPDR LQVMIGLLMSRDGIPIAHHVFPGNTSDTDAFIEAVSDLKKRFTIQRVIVVGDRGMMGK RTLELLEELQLHYILGVRMRNVKAGPELATSPEPYVFTKDNLKVKEVLHQGKRYIVCL NEEEAKRDQWVREQIEVKLRSKLEHGSIKDLIGHSEYKKYLNVSAEAATINTDKLKQA AVFDGLYILQTNTELPTEEVATAYRDLWQIERAFRNLKSTLDLRPVYHWKERRISGHI MLCFLALVVQIRFQKLLENCASEYGYTEVIRALRKVHAVKLKLKDQDHLVRTEIHGAA AMAFRAVGLRVPERVQKMQDNYHK" gene 1980581..1981531 /locus_tag="Dhaf_1855" /db_xref="GeneID:7258824" CDS 1980581..1981531 /locus_tag="Dhaf_1855" /EC_number="1.1.1.169" /inference="protein motif:TFAM:TIGR00745" /note="KEGG: cbb:CLD_3399 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_002458332.1" /db_xref="GI:219667897" /db_xref="InterPro:IPR003710" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR013752" /db_xref="GeneID:7258824" /translation="MKVAIIGAGAMGSLFGGSLAGVVDEVCLYSTNKAYVEAVNKNGL IMTQGDNKWVVKARATSNPAEIGEADVAIIYVKYTGTRQAVQDAMVSCVTLNTMVVTL QNGIGNVDIIKEYIPEDQIVYGLSTLTSDVKAPGHIEMTTLSKVGTSMWPLNGVVTPK LEKLVDLMNQVNLNADIAPDVNERIWRKLMVNACENTLCAILKVNVTDLMINTPESYE IARQIIFEVSDVARAKGMNISREEALKHVMKVTYAVPGHVPSMVFDILNKKKTEIGCI NEAIANEGKKLGVPTPAVETIARLIRALEANYDRTIKHHR" sig_peptide 1980581..1980643 /locus_tag="Dhaf_1855" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.940 at residue 21" gene 1981576..1982883 /locus_tag="Dhaf_1856" /db_xref="GeneID:7258825" CDS 1981576..1982883 /locus_tag="Dhaf_1856" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psa:PST_1671 benzoate MFS transporter BenK" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458333.1" /db_xref="GI:219667898" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258825" /translation="MRKINVNKVIDEAKFNRYFLIIFVLLLLALIFDGYDMGIYGVTL PSVMKELNLNATQTGLLASAGMFGMMFGALLFGMLSDVIGRKKTIIIGIFVYSVFNGI VAFIHSASIFAVVRFIAGMGMGALTPVVISLLSEYTPRSRRTLLLTMVMVGIPLGQLV ASLAGVAFLESIGWRVLYLATLIALIMIAFVVWNVPESMKFYVPRGETKTIKKVLAKA NPDFEQTEEDVYELSIVNQQKASLGSLFKSGYAKNTIYIWIAFFCNLYLFFGISTWLP KLMTMLGYPLKSSVMFLAIFLLGGVLTTPFVGMLGDKYGYKKVMPVLYAMSAVLVSLL SFQMSTFIFYTLLFLAGCAVTLVQSMTLAAAPDFYPIAFRGTAMGWGSAVSRLGSAVA PTVVGVLLTANLPVRGVFLTFIIPAVIACIAILLTKKDPDLVG" gene 1983053..1984243 /locus_tag="Dhaf_1857" /db_xref="GeneID:7258826" CDS 1983053..1984243 /locus_tag="Dhaf_1857" /inference="protein motif:COG:COG0006" /note="KEGG: pat:Patl_3777 peptidase M24" /codon_start=1 /transl_table=11 /product="Xaa-Pro aminopeptidase-like protein" /protein_id="YP_002458334.1" /db_xref="GI:219667899" /db_xref="GeneID:7258826" /translation="MAEVFHERLKSPIPTRELARRSRELQAVMKKENIDCILAQNITQ YMGGCNRWLTDTTAENHYPQSSFLTKDGDIGYIACSGPPLDLYPPSHLLRIGKPWAAA PYFSVFNFTWDWEGRLFVKWVQENNVQKVGIAGMEMIMWNYYNYIAEKLPGVEIVDAS SLFDEIRAVKSEDEIKFLEKSAALQDKVMGYLPALIQPGVREYEVRAKIMQLVTDHGG EEMIVIMGSAPRGEKFSLLPSFFQNRELQTGDELYVKLQCSGPGGLFTTVGRMFSIGC EPSGALEQGWREAAAAQEKLAGLLQVGADPQVIFGQYNAYLESKGYNQETGLFVYGQG YDHIERPSIQPGETMKLAKDMCLAANTSLISAERTVYCADSFILKPSGPQKLHRTPLT IFRT" gene 1984266..1985450 /locus_tag="Dhaf_1858" /db_xref="GeneID:7258827" CDS 1984266..1985450 /locus_tag="Dhaf_1858" /inference="protein motif:PFAM:PF00557" /note="PFAM: peptidase M24; KEGG: ser:SERP1094 proline dipeptidase" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_002458335.1" /db_xref="GI:219667900" /db_xref="InterPro:IPR000994" /db_xref="GeneID:7258827" /translation="MSAAERIRRPISDRELRRRWGATKELLKKYDLDSAFTQGNNMHL GGYVRWLTDVPAEYNYHMTVLFPADEEMTLVRTSGSPIPQWALRGVKEVLYAPFCPTL NYTADLEAGLVIDYLRKRNPKRVGWIGKASINAGLMGKVLAAFPHIEFVDITDEFDMI KGLKSAEEMELVRETARIHDAVWAALPAIVKPGMMEYQIRAEVMQLLMNLGSEEHLLF MATAQPYKPCGMSTFQYANRRVQEGDYGVLLVEVSGPGGYYCESARNFCFGEPYQELQ EAWDVAVQAQQLTADLLTPGRPAKEIVAKYNQFVAERGYSQEGRLYGHSQGYDLVERP AFMAAHEFGEETMEIRTGMNISLHPYFIDQVQTVYINDNYYVTEHGAEKIHKTAPKII IL" gene 1985511..1986173 /locus_tag="Dhaf_1859" /db_xref="GeneID:7258828" CDS 1985511..1986173 /locus_tag="Dhaf_1859" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: cbo:CBO1335 cyclic AMP-binding regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002458336.1" /db_xref="GI:219667901" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7258828" /translation="MLAIYTKYYNLDDNTRDILKHLGTPLEYGPGEMIYYQDEPASGL VYLDEGKIKNFFLYSDGTEKTLCILEAPSITGETAVIDGGTSICSAVAVTQVKIVFIP REKAQELLASKPELMMLILKYMALKIRSMQVQAQEIVSNIPQRLAYLLLNYKKYGIFV HNAQDPRLFIKHDELAGFIGTTRPKVTEHLNNFSRKGLIDKGRGYIVIKDLEGLRKIS RH" gene 1986543..1988177 /locus_tag="Dhaf_1860" /db_xref="GeneID:7258829" CDS 1986543..1988177 /locus_tag="Dhaf_1860" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: amt:Amet_2035 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002458337.1" /db_xref="GI:219667902" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7258829" /translation="MKKQWIKTKLTAGLMVISLLAAGCSAQTPADSAQSSGNPSAAKD EVIVAVGGEKESGYDPCTGWGSHGTPLFQSKLLDTDTNNQLKNDLATGYEVSEDGLTW TFTVRDDVICHDGEKLTAKDVAFTYNKTKENGISTIDLTLLDKAEAIDDTTVMFHMKS PMSTFIYQTAALGIVPEHAYSDPAAYAQAPIGSGPYKFVQWDKGQQLIVEAHEQYYGG KPSFKRLVLLFLSDDAAYAALQAGQVDVAKISENLAVKGMPGYNLVDCKTNDFRTVAL PVQKPGETSKEGYPIGNEVTSDPAIRKALANGINRQKIIDTVLNGYGDVAYTIAQGLP WDNKEVILTDGNVEAAKQILENAGWVDTDGDGIREKNGLKAEFSLIYASDDSTRQSIS MAFKEQAKAFGINVITEGLSSADRNPRKHKDAFMLGGGDYNPTPVYNALYGAYAAKGG WYNIVAYKNEKVDKYLEAAVAATTQEEANQYWQKAQWDGTTGGSILGDAPYIYIVNIS HLYFVRDGISIGEQKIHPHDHGFAVLGNIMDWSSVK" sig_peptide 1986543..1986623 /locus_tag="Dhaf_1860" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.944 at residue 27" gene 1988262..1989251 /locus_tag="Dhaf_1861" /db_xref="GeneID:7258830" CDS 1988262..1989251 /locus_tag="Dhaf_1861" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msi:Msm_0301 peptide/nickel ABC transporter, permease component, DppB" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458338.1" /db_xref="GI:219667903" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258830" /translation="MNKSIAKMIGVSFLRGITLLVAVVIVTFLLADASPIDPISAYVG SESAISEEQREAIARYWGLDQPPAGRLVSWLKALAQGDMGKSYYFQQPVTAVIGERFT QSLMLMGVAWVLSGIFGFLLGVIAAACRHNPIDKGIKTVCLLMSSSPPFWLGLLLMMV FAVKLGWFPLGLSAPIGKLASEVTIWERLHHLVLPAVTLSITGVSGIALHTRQKLIDI LESDFMLFAQARGEGKWQAIRRHGFRNILLPAVTLQFAAISELFGGSVLAENVFSYTG LGQAAVLAGTHGDTPLLMGIALFSALFVFCGNMIANLLYPVIDPQIREAAHGE" sig_peptide 1988262..1988357 /locus_tag="Dhaf_1861" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.699 at residue 32" gene 1989241..1990092 /locus_tag="Dhaf_1862" /db_xref="GeneID:7258831" CDS 1989241..1990092 /locus_tag="Dhaf_1862" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_B0214 binding-protein dependent transport system inner membrane protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458339.1" /db_xref="GI:219667904" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258831" /translation="MVNETVTIKRPLINRRTWTLTIITSAVLILVGIAAAGVLMSPEA YATNFENKNQPPSFSHLFGTDWMGRDMLARTVKGLSTSILIGVLAAGISSVIAVILGT LSAVMGKKADQVVLWLIDMVQGIPHLILLMLISFMLGKGLQGVMIGIAITHWPNLARI VRAEVLAVKNGQFVQASRRMGRSPMFIAVGHILPHVLPQYIVGLILLFPHAILHEASI TFLGFGLSPEEPAVGVILSESMRYLTSGVWWLTVLPGAALLAIVLLFDAIGDNLRTII DPYSAQE" sig_peptide 1989241..1989381 /locus_tag="Dhaf_1862" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.797 at residue 47" gene 1990101..1991033 /locus_tag="Dhaf_1863" /db_xref="GeneID:7258832" CDS 1990101..1991033 /locus_tag="Dhaf_1863" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: amt:Amet_2038 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002458340.1" /db_xref="GI:219667905" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258832" /translation="MSQNKAKPPVLEVKDLSISFRMYDRGLNQKELKVISSLDIAINA GEILAVVGSSGSGKSLLAHAILGILPYNSSYSGSMKYCGQELTPRLQKKLRGKEIALV PQSVGFLDPIMRVGKQVRGIYGTEKQQQEVFRRFNLAPDTAEKYPFQLSGGMARRVLV STAVITDAHLIIADEPTPGLNPEVAAETMRYFREIADGGSAVMLITHDIDLALSIADR IAVFYAGTTIEIAPVEDFIAGKEQLRHPYTKALWDALPQNDFVPIPGLQPYAGSLPSG CPFAPRCRQRTDSCAGNVEMREVRGGEVRCKHVT" gene 1991023..1991640 /locus_tag="Dhaf_1864" /db_xref="GeneID:7258833" CDS 1991023..1991640 /locus_tag="Dhaf_1864" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM_0007 peptide ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458341.1" /db_xref="GI:219667906" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258833" /translation="MLLEVNNISFGYSKKDLILKNVSFSVDKGERVGLVGPSGYGKST LAKLLAGYLAPTEGEILFEGKPLPTTGYCPVQLIYQHPEKAVNFRWRMRQILEESWVP DEAFLQKIGIEKQWLNRWPNELSGGELQRFCIARILGPQTKFLLADEISTMLDVITQA QIWQLVLSVVEEREMGMIVVTHSEALAQKACTRIIGLPALNAVQP" gene complement(1991637..1992941) /locus_tag="Dhaf_1865" /db_xref="GeneID:7258834" CDS complement(1991637..1992941) /locus_tag="Dhaf_1865" /inference="protein motif:PFAM:PF00672" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ctc:CTC01905 sensory transduction protein kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458342.1" /db_xref="GI:219667907" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7258834" /translation="MLEIKLGTKLALCALSAFIIAAVVFFIVHKAGTLWIDHKFSDPA FVEQQQDLEIQNLQEYITNSQASALDYHVVSNWVKERQLTTLFLYYGDRLIYDSTITY HAGNLASGRLTSPLPWQKTYPLQFSDVEVTAVVSTLARHRFVDQLNIIGLTVFFLTFL LIMLYYVRRKVVYIHQLAQEIKNIEGGNLNFPITIKGEDELASLAQDVDKMRHALLKQ IIRFQKVRKDRDQFAVHMSHDLRTPVTSLIGYLDIVNQKRCPSKVVQEQYLHKAEEKA LQLKSLSENMFTHFLTSMDESKAEDIFCDSAAINLLIDDGLILLESHLFQCLASKYEG EAAFFAIGKTSLERILDNIFSNLLKYADPAFAIEISCHRGEQGLAISFGNPIRTEETG AVASAGIGLNSAGEIARQNGGSLHIHKQDGVFQCTLFIPEIP" sig_peptide complement(1991637..1991729) /locus_tag="Dhaf_1865" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.911) with cleavage site probability 0.776 at residue 31" gene complement(1992934..1993638) /locus_tag="Dhaf_1866" /db_xref="GeneID:7258835" CDS complement(1992934..1993638) /locus_tag="Dhaf_1866" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01906 transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458343.1" /db_xref="GI:219667908" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7258835" /translation="MVPASTILIIDDDNDICEVIGALLQSEGFLTLRARNGQEALSLL NSSVDLIILDIMMPGDSGFTICEKMRRITTAPILYLSAKSLTADKEMAFDSGGDDYLT KPFIPAELLTRVKAILRRYQVYRGKKLSSKSDRDLIRINNLVVHPTSGEVFLNGTPLL LRPKEYQLLAFLVRNRGTVFSVQNLYEQLLGESYLPSANNTVMVHIRNLRQKIEADPQ HPKYILTVWGEGYKFA" gene complement(1994020..1996113) /locus_tag="Dhaf_1867" /db_xref="GeneID:7258836" CDS complement(1994020..1996113) /locus_tag="Dhaf_1867" /inference="protein motif:PFAM:PF00158" /note="PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: tpd:Teth39_0788 Fis family GAF modulated sigma54 specific transcriptional regulator" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458344.1" /db_xref="GI:219667909" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7258836" /translation="MHYQSNVENVNPYIGPTADIDISGRWRGIMQSKKDFLEKGTDPR LSPYVRDEIANSWIRSQSYNLTPESMGTAPTISSRELNSIFEQNKELIDIAFPLLDSF KPLLTESGYMVSLVDGSGIVLYRNGNTKMVDRYGNTIGPGVLWNEATIGTCAHVLSIR HKKPISLLGPENFPAYFQNDITSTAPLFDSDGKVIAVLILLQKLGDDPWDLDLHNLQY LTLGWVTSLAMEIKTQLNLKLSNSLFKSTNTALQTAIKMMTEGMVIVSREGLIQHINS PAAQIFNCNTNEAIGRNIMEFLVKNDALAEALRQLKMIHNIEVEVLNDYGTQGYTFSI QPLPADSSGSSGGVVKIVDTEKAKNMVSSSSGAKLDFDFQSIKGASTKMLRTKSLAQR FARSPANILLIGESGTGKELFAQAIHNEYRPSGPFIVLNCAAIPKNLIESELFGYDSG AFTGAKKNGSPGKIELAEGGTLFLDEIGDMPIEIQAVLLRVLENKQVMRIGGSKYRAV DFRMVAATNKDLATLVQSGQFRQDLYYRLSVLRVDIPPLRQRDSDVLSLAEFFIQKYN WRSKLPKLSHETKIKLMEYTWPGNVRQLENAIIYALNVSEDELILPEHLPDEIIHNKN HPASLSLNPIELSKENNLNEAELRDVVSLKEAEKIVVQNALAKSGNNICIAAELLGLS KSTLYRKLKLLGIDE" gene 1996426..1997811 /locus_tag="Dhaf_1868" /db_xref="GeneID:7258837" CDS 1996426..1997811 /locus_tag="Dhaf_1868" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: pth:PTH_1537 di- and tricarboxylate transporters" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002458345.1" /db_xref="GI:219667910" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7258837" /translation="MKKKWLGLGLGILIMVIAYFLPETAGLTQAGKMAIAILLTGIVL WVTEVMPLAITALLLMVCLPYFDILNWSTTWSKFISSVIFFVIATFAITVALIKTSLA TRIAGVLVRWSKGDPKGLVLGFMVGSALLSSVCNNVPTCSLFMSLALSILITDNAIPG KSNLGKCLMIGIPFGTMIGGAMTPAGTSINIMAIGLLEEATGMTISFLDWMLMGIPFA VIMVPISWLSLVMIFKPEAISQKSEDTINNMVISAGRLTSQEKKIITIIGVMLVAWIA STWVPWLDATGIAVMGLIAFFFPGIEVLTWDEFVKGVSWEVILMIGGVQAVAAGIMAT GAANWLVDGIMAGAANWSTPMLAGAAASVMTILHAICPVGPAICGMATVPISGLALLA GASPAVLTMIVALGAAITFILPLDCVPLITYSKGYYKMGDMVKAGIVPTIAMILVCAF VLPVLGPLIGI" sig_peptide 1996426..1996503 /locus_tag="Dhaf_1868" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.697 at residue 26" gene 1998139..2000712 /locus_tag="Dhaf_1869" /db_xref="GeneID:7258838" CDS 1998139..2000712 /locus_tag="Dhaf_1869" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bph:Bphy_3526 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458346.1" /db_xref="GI:219667911" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7258838" /translation="MSKKDKKTCIKGIGLCGFGSGSNSAAVDVQDGKVVRIRNFRYDK EYTPEEMKPWRLQVNDKIFEPTMKSLLPPYSMIYKKRTYSKNRIPYPMKRVDWDPEGE RNPQNRGISKFVRISWDEATDLIAKELKRVYKEYGPYTVLAQGDGHGETKTVHAAHGC QMKLLDLLGGYTLQARNADSWEGWYWGAKHVWGQDPVGQGKQTNLFKDISENSKMVLF WGCDPETTPWGWGGQQASRLSYWFTDIGIKSVYICPDLNYGAAVHADKWIPVLPNTDL AMQFAIAYIWLTEDSYDKDYIETHTIGFDYLKRHALGEDGTEPKTPEWAEKICGVPAR TIKALARKWAKEATTIAHSNGGSYIRSCYSHEPARMEVCLLAMQGLGKPGRNQFKFIE WQLFGSNEQMPAPRSEFIPTVKSAYTGWRYTMSPQFLPKTLIPKAIQSDEPLTWYGQT MAGYPREDQFIEYQYPIEGGAPIHMIWTDTPCWTTCWTGGNEMIEALRNSKIECIVAQ HPWLENDCLFADIILPTSTKMESRDISVDTLSGNFNHLFYEEQCIEPVGEAKSDWEAV CEVAQKLGLLEQYTDGMSEMDLIEKGFMESGVQTKISFEEFLAKGYYMIPTADGWEDD IPGFGKFYQDPKQYPLETPSGLLEIFSQDLADVFPDDQERKPYPQWIAFGESHSESLL HPKSEKYPYLIVSNHPRWRVHANLDDISWLREIPTCKVAGPDGYLYEPVWINPVDAEK HGIQSGDIVKLFNDNGWVLGGAYVTERIRPGAIYQDHGARLDPIKAGEGDRGGANNLI CVSNTVSKNCAGEVTSGFLINIEKCDLDALKAEYPEAFNREYDPGTGVCLSSWIVGGA E" sig_peptide 1998139..1998219 /locus_tag="Dhaf_1869" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.653 at residue 27" gene 2000712..2001527 /locus_tag="Dhaf_1870" /db_xref="GeneID:7258839" CDS 2000712..2001527 /locus_tag="Dhaf_1870" /inference="similar to AA sequence:KEGG:BamMC406_5287" /note="KEGG: bac:BamMC406_5287 pyrogallol hydroxytransferase" /codon_start=1 /transl_table=11 /product="pyrogallol hydroxytransferase" /protein_id="YP_002458347.1" /db_xref="GI:219667912" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7258839" /translation="MKVFVIDVSRCNGCYGCQLVCKDEHVDNDWSPVAKPQPDMGQFW MKVKETVHGSVPKVKVEYVARPCMHCDHPACIRPEDQGAVYKRTDGLVIIDPEKARGK KELVDTCPYGAIYWNEALEIPQKCTGCAHLVDEGEVPRCVDACATEALKFGEEEEFKD LIAQAELMQPELGLKPRVYYVNLPKLFVAGEVYDPQANEIIENAAITLTDLATRQSWT CQSDDFGDFWFKRIVAGKYALRIEAQGFKPYAMTELNVDKSLNVGSIALEALK" gene 2001555..2001710 /locus_tag="Dhaf_1871" /db_xref="GeneID:7258840" CDS 2001555..2001710 /locus_tag="Dhaf_1871" /inference="similar to AA sequence:KEGG:Caur_2972" /note="KEGG: cau:Caur_2972 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458348.1" /db_xref="GI:219667913" /db_xref="GeneID:7258840" /translation="MCFRPPTANKPVKCPACGMYNPPTMKVCKKCGFDGTEGSGDPSK QKPKNED" gene 2001881..2003266 /locus_tag="Dhaf_1872" /db_xref="GeneID:7258841" CDS 2001881..2003266 /locus_tag="Dhaf_1872" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: pth:PTH_1537 di- and tricarboxylate transporters" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002458349.1" /db_xref="GI:219667914" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7258841" /translation="MKKKWLGLGLGILILFTGYFWPETAGLTQPGKMSIAILMAGIVL WVTEVMPLAITALLLMVCMPYFEIFNWSTTWSKFISSVIFFIIATFAISVALIKTSLA TRIAGVLIKWSQGNSKRLVLGFMAGTALLSAVCNNVPACSLFMSLALSILITDNAIPG KSNLGKCLMIGIPFGAMIGGTMTPAGTSINIMAMGLLEEATGITISFLDWMLMGIPFA IIIVPVCWLSLIMIFKPEDISQKSIDILQNRVVTTEKLNKEEKKIIIIIAVMLAAWIA STWIPWLDATGIAVMGLIAFFFPGIEVLSWDEFIKGVSWEVVLMIGGVNAVAAGIMST GAAAWIVDSVMGGASGWSYPMLAGVTATVMAVLHGICPVGPAICGMATVPISGLAELI NASPAVLTIIVAFGAGITFLLPLDCVPLITYGKGYYKMVDMVKAGIIPTIAVILVSAF ILPPLGALIGL" sig_peptide 2001881..2001958 /locus_tag="Dhaf_1872" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.819) with cleavage site probability 0.595 at residue 26" gene 2003453..2004625 /locus_tag="Dhaf_1873" /db_xref="GeneID:7258842" CDS 2003453..2004625 /locus_tag="Dhaf_1873" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: glo:Glov_0903 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002458350.1" /db_xref="GI:219667915" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258842" /translation="MHVNISSTNFKLDKINEVNSLNQEKGWAKRIGAECTDCGQCAES CRILTELNESPGQIARRGIEMDEAYGCALCGKCEAMCPLGLSPWRMFEQRRVEAVQQG EITIEEYQYLFPDRAVTVMSMFREYYGIDYSELNTSLPAQTGFLPGCTMLTYSPELTK KVYAALAEKYEKVLLLDHCCGIPLYHIGIPERGDKIKGELGEKVRQLGVKRLITACPN CYYQFKKEGVLPDLEVITVYEALADEFIANQGSEVYAIHDSCPDRFEGIFGRQVREAL DRGNYQRAEMRHHGKNSVCCGSSGQLGHFRPEWATEHEVQNLEEAGKAGADTLLAYCH ACVLNFGNIADRKIKIRHALNTLLGFEEDYSEVKGKAAQMFEGEEGYERYLKLFQD" gene 2004789..2005922 /locus_tag="Dhaf_1874" /db_xref="GeneID:7258843" CDS 2004789..2005922 /locus_tag="Dhaf_1874" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: glo:Glov_0903 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002458351.1" /db_xref="GI:219667916" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258843" /translation="MNHAEETLAACQEIIDNCTDCGLCRAECQLLERIDESLVSLATR QPTVSEAYNCSLCGLCESVCPAGLSPKYMFAALREQSVAKGEIEIEDFRYMFPDRPLN VMKLIREANGIGYGELNPDRECDTAFFAGCSMLTYDPHLVHVLFKTLQQESKTISLLT DCCGLPLYQLGLKEREARFSQGLKDKLLRLKVKKLIFACPNCYYQLQPMALEMGIAIQ TIYEALEDSELVNAPLAEHQRKIVTVHDSCPDRPAGKFAGQVRKALAGKGYSLVEMEH HRDRALCCGSGGQVSHFDPELAQSLVQARLREVEASKVEILTAYCLGCVLNLSKNQNQ IPVQHVLNLLLEFEQDFAGLKKRAQSLLEGPEGEKLWERVMAD" gene 2005948..2006907 /locus_tag="Dhaf_1875" /db_xref="GeneID:7258844" CDS 2005948..2006907 /locus_tag="Dhaf_1875" /inference="protein motif:PFAM:PF02596" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF169; KEGG: glo:Glov_0919 protein of unknown function DUF169" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF169" /protein_id="YP_002458352.1" /db_xref="GI:219667917" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR003748" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258844" /translation="MNYKELNKIFKETLSLRWDPVAVRMMRPGEEKPAQGIEPTVPLR HCQSIITARRGNCLYMPPRSHACPDGTGVLGLVEMSPKLRSGDLYLLFKKMPNIETAR QMISSRPEFKAGSYEATLLAPLEKAAFEPDVVVFTLWPEQAMWLCCAQTYATGERQDF KTSGFNSACADLIVQTMTSGEMNISFGCYGARASSEIDDFELYLAIPTALLEPIAQAL LKLSQKSIPEERKKIYLHPVMDKVGSRRAQSQGEGARVELFVDTERCMGDGLCVDFCP SGVLAMVEAGDRKVAQALHPDACSACYTCVGQCPQQAIQLSYN" gene 2006929..2007714 /locus_tag="Dhaf_1876" /db_xref="GeneID:7258845" CDS 2006929..2007714 /locus_tag="Dhaf_1876" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: glo:Glov_0921 beta-lactamase domain protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002458353.1" /db_xref="GI:219667918" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7258845" /translation="MGVKFTLMGTTAGLGVPAFHCNCIACREARADPFWARTRSGAVL ETGKENILIDASPDLSKQLLRERIQSVDYLFVTHWHYDHFGGIGDLEYYVKLERKRPV ALFLPPSAVDDFAKAYPFLEEVFVIEPWEFGKSYAFEGIELTVLPARHSIETGGILLA GAKRAAYFTDTSGLPAPTARQLQGVDTLICDATFNGANWFPHSHMNWQEAIALGESIR AQHTVLTHLAMHYSTPITAAQLQEKLKDYAQVSLAYDGMVLTI" gene 2007823..2009907 /locus_tag="Dhaf_1877" /db_xref="GeneID:7258846" CDS 2007823..2009907 /locus_tag="Dhaf_1877" /inference="protein motif:PFAM:PF00158" /note="PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: cbk:CLL_A0663 aco operon expression regulatory protein" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458354.1" /db_xref="GI:219667919" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7258846" /translation="MVNNRGSDSLTNKQRSALITQERIDNILRWKEKFLNEPHSVDPR ECDDISNEVAESWLRSRDRGIDPYNSMSKPYPNSREHAEKIVKNRPLIEITKPLMEKF RDMAVLPSGFILYLCDYTGAFLLQAGDMVRVPTEGVAWNESTIGTCAHTICMELKKPI QILGPEHYCVGLHNIVGSAAPIMDESGKVIASIILGQPIEYRLEGEYFNNFLSHTLGL ITALAKAIETQLKLNQTNELLTESNSNLIKVIHELNTTMDTLETTLEVMDEGIITLDP SGRIINMNREVTRIFKIRPEEKSHKNINEFLHTHSQVAALITAGKSVDIEENLVIGND EQPYIINIRPVLNKKTQQIEAAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEI KKAVSIARRFATSSENVLLMGESGTGKELFAQAIHNHSCPLGPFMAVNCAAMPRELIE SELFGYEGGSFTGAERTGRPGKIELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMR IGGRRYKKVDFRLIAATNKNLFKMVKERQYREDLYFRLSVLTITIPSLRNRKNDIDVL SQYFIKNYCQKQGWKTPKITKGALRKIQEYEWPGNVRQLQNALIYAVNSAHNDVIDTD SLPQYILLDSSPFQDEPNFTTDSLSLEHLEKNAIKTALLHAKNSIPDAAKLLGISRST LYRKLKDYGFEY" gene 2010106..2011005 /locus_tag="Dhaf_1878" /db_xref="GeneID:7258847" CDS 2010106..2011005 /locus_tag="Dhaf_1878" /inference="protein motif:PFAM:PF01156" /note="PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: cbf:CLI_2685 IunH family nucleoside hydrolase" /codon_start=1 /transl_table=11 /product="Inosine/uridine-preferring nucleoside hydrolase" /protein_id="YP_002458355.1" /db_xref="GI:219667920" /db_xref="InterPro:IPR001910" /db_xref="GeneID:7258847" /translation="MKIIYDCDNTMGVPGCDIVDGLSLLYLLGKEELDICAITTTYGN SKVDIVYQNTVNMLSEIGRRDIPVYKGCTNRYGLDSEATDYLVKMVNDHPGEISILAT GALTNLYAAYIKDQNFFRKLDRLVVMGGLTHDVIPDGKAFDEWNLSVDPAATHWVLKE GKDLFLITRDMDINVSVSTADFIHRLTRNRSPIGRYIVERSISWLEYTMLHLKSNCFY LGDLVAAVYLVNPQFFEDQQQIISLSTKTISKGLLCPTDNRQEGQTIHLPTLRHRDDF VEDIYTTWLKADCGFVKEIGGGW" gene 2011007..2011273 /locus_tag="Dhaf_1879" /db_xref="GeneID:7258848" CDS 2011007..2011273 /locus_tag="Dhaf_1879" /inference="similar to AA sequence:KEGG:Glov_0901" /note="KEGG: glo:Glov_0901 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458356.1" /db_xref="GI:219667921" /db_xref="GeneID:7258848" /translation="MCWSCNPFCGNCKPPQPRPKVCPKCKTLNFDDPDEAVKCKKCGG ELPKRPPRPVVHCLLAGISCSNPCNKYKTAPEDGIVRPCKYNPQ" gene 2011742..2013976 /locus_tag="Dhaf_1880" /db_xref="GeneID:7258849" CDS 2011742..2013976 /locus_tag="Dhaf_1880" /EC_number="1.2.1.2" /inference="protein motif:PRIAM:1.2.1.2" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="Formate dehydrogenase" /protein_id="YP_002458357.1" /db_xref="GI:219667922" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258849" /translation="MEKQWKKTLDDGSYTVRTCGWSPPGDHPVGCGMILTVKEGRLIK VEGDPEHPITNGRLCVRCLTLPEYTHHPQRVIYPMKRLGAKGENKWQRISWDEAWDTI VDKINYFKENHGAESIVVFGGTGREACLYYYPLGFASIGTPNVCYPQSGWSCYGPRCA ITDYILGAGYPEIDFAGHFEDRYNHPGWKAPEYLMLWGKEPLKSNPDGFFGHSVIDMM KLGTKIIMVDPRISWLATRAEHVLQLRPGSDTALALGLLHVIIKEELYDHDFVENWCY GWDEFVERVMEYPPEKVSEITWVPAEKIYEVARVFAKAKPASLGWGLAVDQNPNGVQL GHALLAMIAITGNLDVPGGVTIGPPASLMGKWRVESRSNLSEELWNKRIGAEQWPAVS TALATTHPDETLNTLETGKPYKLRMGWFNSSNFITPTNSAQPDRWYRALQSLEFSVVQ DTFMTPTAMAFADIFLPLPTFAEHDGVVLTHYGRNAVFAGAMNKALTVGETKSDLEVC FELGKRLNPKAWPWDNVSDFFTEQLKPDTGFGFEELREKGLYQPGYTYKKHEKGLLRF DGEPGFNTVTGMVELCSTLFESWGDDALPYHEEPPYSPYSTPELAKEYPLTLTTGARK YTSFHSEHRQLKTLREIDPNPEMEIHPETAAELGIIEGDWVVIENMFGKARMVAHLTE AIHPKVVHATHGWWFPEKEAAEPSLFGVWESNINTLMPHQHNGKLGFGDTFKSILCKV YREA" gene 2014005..2014340 /locus_tag="Dhaf_1881" /db_xref="GeneID:7258850" CDS 2014005..2014340 /locus_tag="Dhaf_1881" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002458358.1" /db_xref="GI:219667923" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7258850" /translation="MAKYGLMIDYEYCTGCHSCEVACKNEKNLPVGKWGIKLTEVGPW KIDSEKWEWNYVPVPTNFCDVCEERIKDGKKPSCVLHCLGQAMEYGPVEELAKKMAEK GKKVVMFLP" gene 2014396..2014617 /locus_tag="Dhaf_1882" /db_xref="GeneID:7258851" CDS 2014396..2014617 /locus_tag="Dhaf_1882" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458359.1" /db_xref="GI:219667924" /db_xref="GeneID:7258851" /translation="MTKEEFLALDGKAQLKYLNEEAGKGLSFNEISAALKMTKKEFEK FGLYYVKDKFMLKPMRGYQTTVRSGNEKS" gene 2014800..2016065 /locus_tag="Dhaf_1883" /db_xref="GeneID:7258852" CDS 2014800..2016065 /locus_tag="Dhaf_1883" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb1665 major facilitator superfamily permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458360.1" /db_xref="GI:219667925" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258852" /translation="MTQSKSSLHYGWLVVFGGFLTQIILMCGVQFVPILMAPIKQSLE LSNTSAGTIVSVFGLCYAGCSFIWGYLADRAGARTAVSLAGLVLGIAVILFGLLADSF LKAVLIIALVGFGAAGVYSATIPKLIGAWFHPSKRGRAMSTITAGGVLTGAAFGIVLP QLAKAYGWQTAAVILGVLAIICTVVIYLVVRNKPSEKGLIPVGTPADQVVKAAPAMKD AGFKDVLKMKVTWHVSSMFIFWQVAYMTATAFVAVSFVNAGFTAVQGGLAVTIYNLCQ LIGQQIWGPLSDRLERKTVICIAGIWWTAATLGYMFIYGSTLNAMYILIGVMGVGMGM VPVILASFSDYFPTEVGGSGAGVVSTMGLVGRFFGPMLAGYAADATGSITGAFGVGAA AMLLASLVAFSLPSLKKQAAVSVGGESAK" gene 2016110..2016286 /locus_tag="Dhaf_1884" /db_xref="GeneID:7258853" CDS 2016110..2016286 /locus_tag="Dhaf_1884" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: glo:Glov_0916 zinc finger CDGSH-type domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458361.1" /db_xref="GI:219667926" /db_xref="GeneID:7258853" /translation="MCFRPASASRPIECPNCGMKVPVVGGVKQKKCPKCKTDLTQVEA KPEEKPEGEAGTEK" gene 2016527..2017891 /locus_tag="Dhaf_1885" /db_xref="GeneID:7258854" CDS 2016527..2017891 /locus_tag="Dhaf_1885" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aci:ACIAD0233 MFS family transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458362.1" /db_xref="GI:219667927" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258854" /translation="MKNFSISEVMDSFGVNKFTWSIFFFLGLAMVFDGYDYMIVSYTM PQISAEWGLSAVEKGSLSSWSLFGLIIGGAISGIVSDKIGRKRTLVYSIAIYSLLNIP IFFAPSFGFYALFRVLAGLGLGACIPVVTTIFSESTPTNRRALFITFGMAWMIVGWVL AGLVATYLVPRVGWRWCYLVGGFPFIYSIFLHFKMKESVYWLANKGRNEDAVKRLQEI EKVATGKVTNWDPNALVVPPKSKVVGPKALFSKTYRMTTAGVWITYFCGCFTVYGINA WLPSLMLEKGLQLSSAYGLSIAQNAAAVIANCSTGFVAEVIGRRKNLIGSYGLGIVAI LIMAFVGSSFWAILAANIFLGFAINYSITAVQPLMAEGYPTDIRNTGVSWCQAFGRLG GALAPIVAGMIIGLNLGYSSAFLFYVVPLLFGLLAAFLLIRNETKGKSIDQIQEENVL KAGS" gene 2018146..2020389 /locus_tag="Dhaf_1886" /db_xref="GeneID:7258855" CDS 2018146..2020389 /locus_tag="Dhaf_1886" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0935 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458363.1" /db_xref="GI:219667928" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258855" /translation="MSTKIDLEQEGVEVKKACCYFCHQNCGCLVYVKDGKILHFEGDT EYPTNSGGLCCRGNVNLIHLDHEARVNFPLKRKGERGSGEWERITWEQAIDEIGTKLA EIRQHYGAEAVATAGGTSRTDDWARRRFMNLFGSPNGFHNAHLCWIPTFMIETAVYGW SPFEIDLGSSRCLVLWGQNPAISTLPEMSGVSGLKANGLKVIVIDPRYTETAAKADLW IPVRPGSDLALALAWINVIIYEGLADYDFVYEYCQGFDELTAHVEEFTPEWAEPLTGV SADLIREGARMYAMNKPGNIQWGTALDQIGKPAGATQHARAILRAITGNLDCPGADLL TGPSLEFVTDEEMELNEFLTEEQRAKQLGSDKFKLVTWPGYGRIAEIAKKYWGKAPTA EWMCEAHPPTVFNAILTGEPYPVKALLVSATNPVNSYGESQKVLAALKAVDFMVTCDY WLTPTAMLSDYVLPMAGSFERPTITSTYGCSDFLMCSQRAIQPMYERHSDFEFWRDLG IRLGQKEHWPWETLEDAYFYRIKDLGYGVESYDEFVEYYRFHFPEREYFKYKEKGGFG TPSGKVEIYSSVLEELGYPPLPPYIAPVENEVDYPELAKEYPLILTTGAGVMPFHHSE HFNIKELRFIRHEPHMEINPDTAAEYGIQEGDWVWVETRRGRIKQKASLTEGIRPGTV FTERGWWYPERDLRNPELGGCLESNTNVLTSTADEDCDPLSGSWANRGLLCKVYKVSS SDRREDK" gene 2020391..2020939 /locus_tag="Dhaf_1887" /db_xref="GeneID:7258856" CDS 2020391..2020939 /locus_tag="Dhaf_1887" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0934 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458364.1" /db_xref="GI:219667929" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258856" /translation="MARYAMVIDTRKCTGCQSCTVACRVNNELPIDMIYNPVMTHGPL GKFPHVRMVHIPSLCMHCGNSPCVDACPTGASQQREDGIVWVEENKCVGCKACVMACP YGARVSNGAKGTVQKCNFCKDDRVDQGKVPWCVQTCHQKARIFGDIEDQDSEVFKLVN KTKTTGRLLEELGTEPFVYYLY" gene 2020954..2021877 /locus_tag="Dhaf_1888" /db_xref="GeneID:7258857" CDS 2020954..2021877 /locus_tag="Dhaf_1888" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: glo:Glov_0933 polysulphide reductase NrfD" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002458365.1" /db_xref="GI:219667930" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7258857" /translation="MSQKHETWGWMLAVDFFFAGMGAAMLLFAGIAELLTGSNLSTVG ILAGAVFIAMGAGLLVLELGRPFQALRVFMNPKAILTFGAWNMSIAIVAGLFLGTSWL EAFPWFGLVGFRKILAIVCIFTGFVVAAYPGALLARHKARPFWNGPGMMVLFLTSSLL TGLSAYVVVGWLSGAAPVIYSAFPAIGAGLCAFQLVIWIGYLWIKSSGTTEREVAAVK RWTSGNFANPFRIGFMFLGTVVPLVLFLIPNGFSTGVAGILAILGGVIMRNLVVYAGQ DRTWLPGEEKYRSRLPHGDEAFLQKVWTKQI" gene 2022000..2023325 /locus_tag="Dhaf_1889" /db_xref="GeneID:7258858" CDS 2022000..2023325 /locus_tag="Dhaf_1889" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: glo:Glov_0931 radical SAM domain protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002458366.1" /db_xref="GI:219667931" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258858" /translation="MKLQWEEGTTLAQTQSVCPLCLKVVQARITVHDQAVYMEKECSE HGYFTVYLWPDVNHYQWMQQFNLPALPPHSPVAVRDGCPSDCGLCEAHLRQPTLVEIE VTEGCNLRCPVCFMAANDFRPDPNPSLEALGEKYRYILRHTNPDTSIQLTGGEPTTRE DLADIIRLGREIGFQAIEVNTNGVVIGRNPDYLQKLAEAGVSGIYLQFDGLTGEVYEQ IRGENLLPAKLKAIANCREAGVQVVLAMTVIEGINEKQLGEVLKFALANKDVIVGIAY QPAFGSGRFDVPLSKRLTMGDVIFMLAEQSEGILEPYDFWPLGCSNPLCSSSAYLVED QGRIASLSRRLTPREYREAINPQSPQGSVFADIALMNYPDLEPGLTILIENYIDARTM DLKKLRECSMIVAGKSGGLTPFCGYQLTNIHGEKLSEIRKHHDNQKASR" gene 2023332..2025512 /locus_tag="Dhaf_1890" /db_xref="GeneID:7258859" CDS 2023332..2025512 /locus_tag="Dhaf_1890" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0930 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458367.1" /db_xref="GI:219667932" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258859" /translation="MSERKVVPTNCRFCGYQCGLLATVENGKVRKVQPDSSRYPHNAG IMRGCKRWPLISEVMEHPQRINYPLKRVGERGSGRWERISWEQALDEIAAKLAGLKEE FGPEVLATSIGGPHTTFWPLHRFLALFGSPNNMGIGQICWNPGIWANTLTYGWPVDME LDPEGTECAILWGVNPSQSDNSLFWHTVQEFKRRGKPLIVVDPRLTGTAQEAQLWLPV RPGTDAVLALGLLHVIVQEKLYAEEFVQNWCHGFERLCDHLIPYTPAYVEEVTGVKAE DVVKAARLYGKSTPACLYSGRGIDQLGLNSFPTHRALAILRAITGNLDVPGASHLSEM PDFIPELELELSEPYAATSPRSVSQEKLLLQSYQGYAKVREQTMKHKKRLPMRYLTSA HPHRVWKAMLTGEPYPIRSMIVMASNPLLTQADTQLVYRALKSLDLLVVLELFETPTS MLADYVLPSAGVLERPLLETKAGVANIAYGGDQAVGPYYERRPDYDFWRELGLRLGQE KAWPWQTYREALEYSLSPLGTTWDDFSGSGLYYQDNEYLKYEEPDGQGKPQGFATVSG KVEIYSELLREMGADPLPSPRALPQGNADFSLMLMSGARFQPYYASSYHQLEKLRRLH PEPIAEMSPVTGEKLGIEEGSLVDVETERGKARFRTRFVPMCDHVVSVEYGWWYPEMK ASEPELGGIWLANANLLTSGDFDASDPLVGTWTYNGIPCRVAKV" gene 2025587..2026066 /locus_tag="Dhaf_1891" /db_xref="GeneID:7258860" CDS 2025587..2026066 /locus_tag="Dhaf_1891" /inference="similar to AA sequence:KEGG:Glov_0920" /note="KEGG: glo:Glov_0920 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458368.1" /db_xref="GI:219667933" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR001304" /db_xref="GeneID:7258860" /translation="MAATIAFAQGQSEQQVMGILGAYGMGIPGDVEELLTVQENEEIT AVAKIAEFAEGRFFLEVIGVKDGKRSQGAGRLLLGKILANPWECCRYAFSEQENNREY TVSTLARGYALGFYEKMGFQACTPAEIPEWYRDQCEECPERSTCEPMPMIYSGGERK" gene 2026063..2026908 /locus_tag="Dhaf_1892" /db_xref="GeneID:7258861" CDS 2026063..2026908 /locus_tag="Dhaf_1892" /inference="similar to AA sequence:KEGG:Glov_0918" /note="KEGG: glo:Glov_0918 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458369.1" /db_xref="GI:219667934" /db_xref="GeneID:7258861" /translation="MKKAILVFTKVPRVGDCKTRLTEARGGILTYEEATQFYEACVLD VMDVCLSVEEADFWICYNMDGDRPYLDTLLAQVKHPERIAGVFSDQGGSFDDCMQYAT DYILKSGAQERLADAVLISGGDLPTLQPHILKDALKKLEVLSHSEAGYKVALRKVQDQ DGMEIGAALVEGACQEGGFSLVGLTCTTDFDFHSVFYNMDGVTALDMLAAKAIREELP LAYVEEVPDVDIPVDLASQIPMLRVIEHAARYDDLIMVPHRTIGILNQLGIESVALPP EKKPV" gene 2026945..2027970 /locus_tag="Dhaf_1893" /db_xref="GeneID:7258862" CDS 2026945..2027970 /locus_tag="Dhaf_1893" /inference="protein motif:PFAM:PF00724" /note="PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ckl:CKL_0344 predicted NADH oxidase" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="YP_002458370.1" /db_xref="GI:219667935" /db_xref="InterPro:IPR001155" /db_xref="GeneID:7258862" /translation="MLPLFEPIRIKDLEIKNRIVMPPMALDIATEQGAITHKLIEHYR MRTRGVGMIIVEHAYVNPEGKAHPRQLGIHRDDLIPALEHLAAEIHKQGAVVGIQISH GGARSMGNICGPSSIQSQYLTRFGEADRKNCRVLPRKLDQEGIKGIIADFARAARRAQ KAGFDFVEIHGAHGYLVNQFYSPLTNIRHDEYGGSLERRLTFPLEVVKSVRRVVGKSM PIFYRLGADDRLPGGNTVQDSALAAQALEAAGVDCLDLSGGISGYLRHGEEGFFAYMG QAIKPQVTIPVMVTGGIKTGNKANEMIAGGIADFVGVGRTLLKENEWAYKEWVRMGSG TCPYQAI" gene 2027990..2029288 /locus_tag="Dhaf_1894" /db_xref="GeneID:7258863" CDS 2027990..2029288 /locus_tag="Dhaf_1894" /inference="protein motif:TFAM:TIGR00115" /note="TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: swo:Swol_1657 trigger factor" /codon_start=1 /transl_table=11 /product="trigger factor" /protein_id="YP_002458371.1" /db_xref="GI:219667936" /db_xref="InterPro:IPR001179" /db_xref="InterPro:IPR005215" /db_xref="InterPro:IPR008880" /db_xref="InterPro:IPR008881" /db_xref="GeneID:7258863" /translation="MNAVLENIENSEAHFRFTIDYKVFADALEKTYKKNKKNYQVAGF RKGSVPRSVIESQYGSTVFYQEALDLIMADEYKKAVEGLALDTIGDPDIEVGEIEKGQ ELSVKASVPVVPEVTLGQLEGIEVVMPKAREVKKADIEKSLEELQYKNKKITDKEMEP AEKGDTVTVDYDCELDGTKFEPVVDYKALLDDSPDTMGFELQLKGARKGDILTIEQVF PQDHLQPQIAGKTACFNVTVKKVERIEMLPLDDAFAQTVGNVSTMEEFRAEIKKNLEE AAAQRVQMQRNNAILSELFKRCQVKIPESLIMQRAMSMLEQFSGQLEAEGGTLDLYLQ LMNRKSEDFKREVWQDAENSLKADYILDKVIKEKGYTVSEEELNQGCEKFALSINMAP ENARQNLGPLVNKVEYDLKAEKAFHYLLEHAVIREGNKMA" gene complement(2029512..2030141) /locus_tag="Dhaf_1895" /db_xref="GeneID:7258864" CDS complement(2029512..2030141) /locus_tag="Dhaf_1895" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: csc:Csac_0423 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002458372.1" /db_xref="GI:219667937" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7258864" /translation="MAKIEEVKAMVEAGKMRQVPVLVQEALAEGSAAQDILQAMVDSM SVVGDKFSAGEIYVPEMLMSAKAMAKGVDVLKPLMANGSGSSLGTCIIGTVAGDLHDI GKNLVSMMMESAGFAIVDLGVDVPATKWIEAIKDHKNVTLVACSGLLTTTMPALKEAV QTIKGSGLTGFKVIVGGAPVSQQFADEIGADGFAPDAGSAAVKAKELVS" gene complement(2030175..2030978) /locus_tag="Dhaf_1896" /db_xref="GeneID:7258865" CDS complement(2030175..2030978) /locus_tag="Dhaf_1896" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002458373.1" /db_xref="GI:219667938" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7258865" /translation="MIIIGEKINGAIPSVARAIAERNSDFIRNLAKIQADAGANFIDV CASTDVNIEVETLRWLIDLVQEVTDTPICIDSPHVQAIVEAIPFCKRPGLINSVSGEG DKIDVIFPLIADTKWEVAALLCDDSGISKTAEKRLEVFSHIMKRAGEFNIAPSRLHID PLVEMLCTSEDGINMIVGVMKEIKRQYPSVHITGGCSNVSFNLPVRKLVNQAFLVLAM NAGMDSGIIDPTNQDLAGMIFATEALLGQDEYCMEYISAFRDGRFGQKK" gene complement(2031012..2032118) /locus_tag="Dhaf_1897" /db_xref="GeneID:7258866" CDS complement(2031012..2032118) /locus_tag="Dhaf_1897" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bfs:BF0767 methyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458374.1" /db_xref="GI:219667939" /db_xref="GeneID:7258866" /translation="MSIPKFDPSELKVIAEIPNRFGYQPIPIYNFPVTGKEAIKALFE RKPIWQVMLNMGVEAAPFTPPIHPDYVARALVIDGTFVPGVTNTTGGKDLFGIEWEYV PSARGSMVRPGKPFIEDANELKDKVIWPDIAKWDWTGCQKANETYLNKTNAIHGMLLN GWFERLIAFMDFEGAVLAISDEDQQDAVKEFFDKLTNLYIEICDKQLKHFPQIDYFVI HDDWGSQKDTFFSPATVREMIVPYMRRLTDFLHFKGRYCDLHSCGNLIKQVPNMIEAG FDSWNPQLMNDIGKIYELYGDKIIIATAPDDLFDPETASEEEQRASAKAYAEKYCNPN KPTTFSQYAQADLKIMTTAFREELYKQSRLLYGV" gene complement(2032200..2033546) /locus_tag="Dhaf_1898" /db_xref="GeneID:7258867" CDS complement(2032200..2033546) /locus_tag="Dhaf_1898" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B0285 major facilitator superfamily (MFS) sugar transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458375.1" /db_xref="GI:219667940" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258867" /translation="MTGSDQSAPTYFDDMKLTSSHKRMLWLAAICYMFDQMDVGTFAY AAPVLVKTWGLTMEQIAQVNSYGFVGMFLGAIFGGWIADKIGRKKTIILCVAIFSLGS LGNALAFNFHTLAITRFFTGLGVIGMLVVAMVYIAEMMPSEHRGRYQALTMACGTIAI PVGAAFARWVVPLSTESWRYIFVLGGTSILLLPFCFIVFKESPRWLVSKGRITEAEKV IREITGREVDLSSEVPEKIKKSSSLSTLKLILSKEYLKRTIILVIITDGVVLGAQMLG GFYPAILQEYAGFQLTLVLSIMALSWWGIPFGDLSASLVSDKGGRKGPLALFSIINGM TFVVCGFFPTPAVIIAAVFLSRVFGGGSVSILYTYLAESYPTHIRSTAVGLIMGQVRI LSAVIVLIVPPILATYGWLGVHLVNAGIIIVTAIVALIFGQKTSKRTLEEINKAPG" gene complement(2033762..2034988) /locus_tag="Dhaf_1899" /db_xref="GeneID:7258868" CDS complement(2033762..2034988) /locus_tag="Dhaf_1899" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ooe:OEOE_1574 permease of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458376.1" /db_xref="GI:219667941" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258868" /translation="MNEFIAIFKEKGKVLLPILLFIVFQSAFNAFSPVLKGISAEFPE VSVTLIQMVITLPSLLSLPMQLLSGVFSTYLRKKTLVQIALCFMLIGGLAPILVHSSI YAIFVSCGLIGLGQGLLISVSAALITEHFDGNQRGTVFGFKQVASSAGIMFLTLCIGY LAMSAWYNAYWVYLLVIPVLIVVTMYLPKGELDAKLLGKGVGASTVKAILNPSFFYMC FMLFFMGALLFTFYTNISMMVVEKGLGEASAVGQVTALNSFMTIGVGLIIGLVLRAAK KYLMVVAMVVLSIAFFILFSANTFAVVCYGGIAFGIGAGLQQASTLYFLSEAVPKSSS TLGIGLGMAFISFGVNFSPLMVNTLKGVIFNMPNASGSMLVAACGYIVLMIIDIIRET FFNKDSKIGYPASKAI" gene 2036128..2038281 /locus_tag="Dhaf_1900" /db_xref="GeneID:7258869" CDS 2036128..2038281 /locus_tag="Dhaf_1900" /inference="protein motif:PFAM:PF00158" /note="PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Resolvase helix-turn-helix domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pth:PTH_2900 transcriptional activator of acetoin/glycerol metabolism" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458377.1" /db_xref="GI:219667942" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR006120" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7258869" /translation="MIPVKKKLKRTPNQTWNKPVMTKERWEGILAFKAQFVADSGADP LACPHLDKMVAESWIRSRLAGVDPYKNAVNHYLHREQYEKIVKKSAFLIEVTKPLFDV FKNLIHSSNYEMHLIDTAGNSLLNENSYRYLMNPLEKRDLHFTLSSSESTTGTCAHAL ALRHKKPVQLFGPEHYLWELQDIVASSAPVFNENNEVIAALSLIQHLNDSPWAEGYQV LCTHTLALITAITKAIEAQLKLHKSYEKLADNNQQLLLANSELSAANQQILTTHDLLR TTLSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDWVAE GKDLTDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGLAVLRFQNARTYNLNATKRAGTN ASFHFDDLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHNDYRPEGP FIALNCAAIPRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPLDI QAVLLRVLEDRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTI HIPPLRTRSGDIEKLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAI IYGINLSDNSLIEARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELNA IIMALEKTNNSVTKAAKILNISKSTLYRRLRELNM" gene 2038432..2038692 /locus_tag="Dhaf_1901" /db_xref="GeneID:7258870" CDS 2038432..2038692 /locus_tag="Dhaf_1901" /inference="similar to AA sequence:KEGG:Glov_0901" /note="KEGG: glo:Glov_0901 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458378.1" /db_xref="GI:219667943" /db_xref="GeneID:7258870" /translation="MCLGGCNNCGLCPTMPKWRSLTCPSCGKLIVKAGEKCNDCGFIF EPPEKVFCVYNKMMCEFPCRLVTRSNEGGSQFRCRAKWTQPK" gene 2038761..2039975 /locus_tag="Dhaf_1902" /db_xref="GeneID:7258871" CDS 2038761..2039975 /locus_tag="Dhaf_1902" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: cbe:Cbei_0707 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458379.1" /db_xref="GI:219667944" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7258871" /translation="MSAQSSQNTVTKPRLWTRNYLFTLFANQFVCLSFHMLLPTLPLF VRHLDATEDIIGLIMGVFTVTALGIRPFAGRAVDTKGRKVIFLWGAAIIVSSVFAYSL FPVIPFILTFRLIHGLGFGLSTTAVGAMVTDFVPNSRLGEGMGYYGLATVISMAVSPA VGLFIFHSWGASALFHVSAFIAGLGAFSAMFVKYPQKITPRPNEPTSFFLEKNAYLPT VMILLVIITHASIIAFVSLYADSLNISNIGIFFTLYAISSLLTRPVFGLLSDRKGFSY SIIPGIILTSTALIVLYFARDFSHFMIAAICYGIGYGGLLPAFQTMAVRKASPARRGA ATSTFYCGMDIGSAFGMIACGFIAKATGYSTMFLLLVIPVLLALLCYLFLGRDSFKSQ QRLQSLLGKMKR" gene complement(2040122..2040406) /locus_tag="Dhaf_1903" /db_xref="GeneID:7258872" CDS complement(2040122..2040406) /locus_tag="Dhaf_1903" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458380.1" /db_xref="GI:219667945" /db_xref="GeneID:7258872" /translation="MDNKAVSSNKPTHSMTTMTFTLNVQYGEETKAFTFQYEDFFKAV LAKSLEAFGIPEADSAKYILKYDGKPCFKSVRIYDFAEIVDNSTVTLELK" gene 2041117..2043378 /locus_tag="Dhaf_1904" /db_xref="GeneID:7258873" CDS 2041117..2043378 /locus_tag="Dhaf_1904" /inference="protein motif:PFAM:PF01568" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="molydopterin dinucleotide-binding region" /protein_id="YP_002458381.1" /db_xref="GI:219667946" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258873" /translation="MWNLRNPINQDVYKKDWQWQEGEYTVTRTCQWSGPGCHQGCSVL FYTKDNKLIKVEGDPNSNINNGRLCMRCFAVPEATYHPTRIIHPQKRVGERGENKWEQ ITWDEAYDIIESKVRKIWEEYTPKSIVTCFGTGRNATWQSPVLSLVGYKSPNIGGGFL SGDSCYAPRLMAMHTFLGGSFIADLGQLFEQQYDHPEWEPPKYIVLWGCNPIMSNSDG FFGHWVVDAMKLGSKLITVDPRLTWLAAKSEVWLQIRPGTDCAVAMGILNYMINEGVY DREFVDKWCYGFEELKEAVKDMTPARAAEIAWTSEEKIIDIAKKLGTTKPWAMQWGVP IDQAKHGVATSQAIVSIMALSGNIDIPGSSVLVDTGYIQSDVRAAMMHNVSPDISKDR FGDEFPIRKYGFINQHMTDSMLAAIETGKPYPVRMLHIMSTNTFANMGAEAKRVYDAM KSVDFIVVADLFMTPTAVACADIFLPVAMSPERWGLRGWWNPLRTITKVIDGGDVKSD EEIALDLVKRLNPEDAPWADVPELLNYVLTDLQSATYKGTFDELKKLGPSGYYTEVHY RKYENGLLRPDGQPGFNTPTGRIELKATMFEDFDLPAVTYWAEPTESPVSTPELMKDY PFVLTTGQRCYEFFHSEHRQLESMREFHPDPITEINPEDAAALGIKDGDWVYLENKHG KAKLKARLHPGMLKGVVNAEHGWWFPEREAAEPSLYGVFESNANCLTTQFDYGPTSYG APYKNQICKVYKA" gene 2043425..2043760 /locus_tag="Dhaf_1905" /db_xref="GeneID:7258874" CDS 2043425..2043760 /locus_tag="Dhaf_1905" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458382.1" /db_xref="GI:219667947" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7258874" /translation="MSRNGILIDYEFCTGCHTCEMACKTELGLPKGKWGIQVSQIGPW QIDDNQWEYTFIPVPTTLCNLCEDRVAAGKLPTCVHHCQALVMRYGPVEELAALMKDK PKMLLFAPK" gene 2044116..2044967 /locus_tag="Dhaf_1906" /db_xref="GeneID:7258875" CDS 2044116..2044967 /locus_tag="Dhaf_1906" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_3486 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458383.1" /db_xref="GI:219667948" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7258875" /translation="MDYCEKSDEEILENYEEVLIHLKDLLNEDMMATITNKTHSYRYF PGNKMAIKGKDPHAKTELLPDNHLLQAMKARKRKVTIVPKHEMGFPFLSIAYPIEGAN GEIIGCVGIGKSLEREHKIEEISHGLAATLQQVDAGLQEVAAGSQGLSLKINTAVKLA NESAIKIKEIDTVISAISDISSYSNLLGLNASIEAARAGEHGRGFAVVAEEMRKLAMQ SNVSAKTVTQILTQMKDSIEEIIAEINAIGSIAENQAAATEEITAAVTDVGTNAQNLA ALSTIRV" gene 2045073..2047457 /locus_tag="Dhaf_1907" /db_xref="GeneID:7258876" CDS 2045073..2047457 /locus_tag="Dhaf_1907" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458384.1" /db_xref="GI:219667949" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7258876" /translation="MKYQKPPTNNEVYMRNENVYGKRVKTWKEDGYTVVRDQQFTAPG CHNSCGILYYLKDGKVAKVEGDHTHPFNRGKTCMRCLNLPEIMYHPERLKYPMKRVGE RGENKWERISWDEAYALVKEKSSQYTKEFGAESIATINGTGRNICIQSSALNYGGFHS PNISLAFLSGSCCYIPRMLAAAKACGARTIIDTAAQHPVGYEHPEFEVPEVIVNWAKN GLACNADGTLGHWIVDLMKQGTKLIVIDPSLTWLASRADVWLRIRPGTDTALALGMAN IIIQEGLYDKEFCDLWSYGFEEFAARCAEYPVEKVADICWCPKEKIIEAARLYGKAKP ASIEWGLPLDQCKNGMAASHAVHHLRALTGNLDVPGGDLLIRHTNALDSQMNSLIEYV PKEDLENKRLGANVSPFTVGHQGATAQPDAILRAIETGDPYAIKMIVLFGTNPISNMA AEAPRVREALKKVDFVMSLDYYMTPTNIACADLVLPIAMSAERNAASHNFVPLKIESK FTQYYDAKSDDQITAELGHVLDPEGGFKNIKTDIDFVNAYLRQWAEPSEGDLTFDDVV NGPNLGYVYDDWNATYYKYKKGLLRADGQPGFNTPTGRYEFYVTAYAAWGKFDPLPAH EEPPESPYSTPQLFEQYPLIFTAGHRSYEFFHSEGRNQPTMREFHPWPLCELHPDTAA KYGLAEGDWVWMENQRGKCKQKLKLNPSLDLRQCRAEHGWWYPERAGAEPSLYGTFDS NPNNLIPQYQFGPTAYGAPYKTQLCKVYKVTPENDENLTERLIKTGGFSYVREY" gene 2047441..2047788 /locus_tag="Dhaf_1908" /db_xref="GeneID:7258877" CDS 2047441..2047788 /locus_tag="Dhaf_1908" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002458385.1" /db_xref="GI:219667950" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7258877" /translation="MSANTEKYALLIDYEFCTGCHSCEVACKKELELPFGKYGIKLLQ HGPTEVYPDQWEWNYIPFPTKLCDLCETRVASGRLPGCVHNCQAGCMQFGTIEELTPH LALKPNRVIFSPK" gene 2047959..2048210 /locus_tag="Dhaf_1909" /pseudo /db_xref="GeneID:7258878" gene 2048330..2049412 /locus_tag="Dhaf_1910" /db_xref="GeneID:7258879" CDS 2048330..2049412 /locus_tag="Dhaf_1910" /inference="protein motif:PFAM:PF07726" /note="PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sco:SCO1306 hypothetical protein" /codon_start=1 /transl_table=11 /product="ATPase associated with various cellular activities AAA_3" /protein_id="YP_002458386.1" /db_xref="GI:219667951" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR001270" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011703" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7258879" /translation="MSIVPALSIALQAGVPILAWGPPGVGKTATITSLAEALELPLEV VIASIREPADFSGLPVVGEAGVHLEPPAWAHRLVRAGKGVLFLDELSTAPPAVQSALL RVVLERAVGDLTLPGSVSVVASANPPEQAVGGWDLSPPLANRFCHLYWSLDTQGWIDG MIHGWSISHLARLPQGWEDAVTAKQGLLASFIRHRPHLLLQVPHDESQAGRAWPSPRS WAMAARLLAAADSVTADDDVVAALLAGCIGEGACLEFLAWRKDLDLPDPEEILADPTR LKLPDRGDQSFAILTAVITAATGRLTKERWAAAWIVLALAAEQGKKDVAAVAAKKLAA ARRPEFPLPQKELHEFVPLLQQGGLM" gene 2049409..2050071 /locus_tag="Dhaf_1911" /db_xref="GeneID:7258880" CDS 2049409..2050071 /locus_tag="Dhaf_1911" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458387.1" /db_xref="GI:219667952" /db_xref="GeneID:7258880" /translation="MNPPAIHYKSLPWAENASKIYKYGQVVVGMGSGHEPRLDFYNST SSNLPAYLIYVVFKITLGEGWVEELEKIHRQRPGLWKTEVCLNQEGWEEYRLYTLKQD KPICSSRISIANSRIHSFSIGAEDVAPLLKKVIENYPPVFLPKLKNYRYTYFFPGYLP FYSLNKASTRLGEEMSRQREETRKITADENTLQTGACWAGDSSGLLETIEALKCLEVF MA" gene 2050068..2051444 /locus_tag="Dhaf_1912" /db_xref="GeneID:7258881" CDS 2050068..2051444 /locus_tag="Dhaf_1912" /inference="similar to AA sequence:KEGG:RHA1_ro10086" /note="KEGG: rha:RHA1_ro10086 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458388.1" /db_xref="GI:219667953" /db_xref="GeneID:7258881" /translation="MTFPQELQAARLRLIKERPYLASAAWALQPAAKPGLGTLAVDMY WRLYYDPGVLSQWTPEIMGGVLYHEICHLLRDHPERMKYFNPQLSNLAADAEINDDLI REGVKFPVQPVTPQSLGLPDNLLAEEYYTALAGQEKQSADGSPENEQTDAPGQESDQN NRGNSHNENGQDAQAAERAHEKHGQGEKDPGKKDPMKKNSQSCEEEERPMPGSGRCGS CATGQRAPWEEEPPGKGSASGISPVEGELIRRDVAHQIEEQARGQGKVPGHLVRWAEE KLRPKIDWKKQLASAIRRTVADTAGATDYSYSRPSRRQGKVGKGEVILPSLRRPVPAV AIIADTSASISDSMLARTLAEISGILKALGQQEGVQVLAVDHTVQSCRRMFRPEQIRL AGGGGTDMGAGLEGASRLRPLPQVGIVLTDGYTSWPPQPPQGMRVIVVLSGEGTAPDW AKVIQMSV" gene 2051804..2052127 /locus_tag="Dhaf_1913" /db_xref="GeneID:7258882" CDS 2051804..2052127 /locus_tag="Dhaf_1913" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458389.1" /db_xref="GI:219667954" /db_xref="GeneID:7258882" /translation="MGSELKSVTVKMPAAMVDQLKWIAEKRGETVSDTVRKLINRALA ERVYEKNTELLTKVVRQQVEAAIKSYVIFPSLDNTERTVRLVDQVFDRRVSLSRENRD NNLLS" gene 2052234..2053208 /locus_tag="Dhaf_1914" /db_xref="GeneID:7258883" CDS 2052234..2053208 /locus_tag="Dhaf_1914" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ava:Ava_3797 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458390.1" /db_xref="GI:219667955" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7258883" /translation="MSYLKITHELYKEAALTPQASLCCISQPSRYLPGLTVPTAMSEM NYGCGTTVHLGELKPQDTILYVGVGGGLEALEFAYFTRRAASVIAVDRVPEMLAKARS NFKLAEEANSWFQSAFIDLREGDALDLPVADESVDVAAQNCLFNIFEGEDLNRALLEM HRVLKPGGRLYISDPIASQPIPEHLRQNERLRAMCLSGALSYEDYLQQISGAGFGTIE IRARRPYRLLDKERYSLTENILLESLELVAYKQPVPEGGARIFAGETIIYFGKERLWD DEGSIVPRDIPHPVCQKTAAYFRRLERTDVVVTAPTYHYGGSGGGCCC" gene 2053287..2054132 /locus_tag="Dhaf_1915" /db_xref="GeneID:7258884" CDS 2053287..2054132 /locus_tag="Dhaf_1915" /inference="protein motif:PFAM:PF00230" /note="PFAM: major intrinsic protein; KEGG: glo:Glov_0897 MIP family channel protein" /codon_start=1 /transl_table=11 /product="major intrinsic protein" /protein_id="YP_002458391.1" /db_xref="GI:219667956" /db_xref="InterPro:IPR000425" /db_xref="GeneID:7258884" /translation="MKYQRDFLGELLGTFLLVLFGCGSVAVSVLFNSHTGLLQIGIIW GIGVSLAIYATRHLSCAHLNPAVTLAMVATKRMTVKKLPVYLMGQFLGAFCAGLLIYV LFNPSIVALESAQQIVRGTPESMSIAKMFGEYYQLPGSTAVVSMPLAIGAEIVGTFLL VLMIFSLTEGCNLGRPDNNLAPLFIGLTVTSVLCLIAPLTQAGLNPARDFGPRLVAWI FGWGAAAFPDQSGGFFFVYILAPVLGGLAAGLLFTWVLEPLMRKTESQCCEEELAERV SPSLN" sig_peptide 2053287..2053367 /locus_tag="Dhaf_1915" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.678) with cleavage site probability 0.480 at residue 27" gene 2054255..2055346 /locus_tag="Dhaf_1916" /db_xref="GeneID:7258885" CDS 2054255..2055346 /locus_tag="Dhaf_1916" /inference="protein motif:PFAM:PF02492" /note="PFAM: cobalamin synthesis protein P47K; KEGG: rba:RB10061 hypothetical protein" /codon_start=1 /transl_table=11 /product="cobalamin synthesis protein P47K" /protein_id="YP_002458392.1" /db_xref="GI:219667957" /db_xref="InterPro:IPR003495" /db_xref="GeneID:7258885" /translation="MKTKLILVGGFLGVGKTTLLGEAARRLSQTGRKVGLITNDQASE LVDTVYLEQTGTEVSEVSGSCFCCNFPGFMEAIDHVNAHKPADIIIAEPVGSCTDLSA TILQPLKEKFADKLSVAPLSVLVDPRQLTDILDGRTAGLHPSAAYILRKQLEEADLIV INKTDLLTPLAVEILKKRTAEEWPLASVYAISAKTGEGLAAWLHEAQQRSGAGTHLAE VDYDTYAEGEAVLGWLNATIELQSQGADWDTLGRNLLNSLRSRFGSLNAAIGHVKLLI ATDQGYVIGNITGAKDSLDIRESAGTGRKAQLTLNARVQMEPDLLEEIVKEEIAKVQA DKITATIAVLKCLKPGRPNPTYRYGTIVG" gene 2055390..2055551 /locus_tag="Dhaf_1917" /db_xref="GeneID:7258886" CDS 2055390..2055551 /locus_tag="Dhaf_1917" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458393.1" /db_xref="GI:219667958" /db_xref="GeneID:7258886" /translation="MYKYLVSLRKQKNAKGMFCQRNSHFREANKPGSRQNSGVKNFEP LQKALRVIN" gene 2055652..2056674 /locus_tag="Dhaf_1918" /db_xref="GeneID:7258887" CDS 2055652..2056674 /locus_tag="Dhaf_1918" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_2515 putative alkanesulfonate ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458394.1" /db_xref="GI:219667959" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7258887" /translation="MAITESDRNYRLPKAKQAEVKRTASLPQILQMLAPAGALLAALI LHLTLPNVYPKGYQSVTYPAFLKTCLGIYMIFGLAAFLLPKLRAKMLYLSWLLTAAVL LVAALDMATLKTGHFRLPFVPSPDKILSSVTSNLETLAVSLYFSMKLLFTGIVIGIIS GMISGILLGWSQICNYWFMPVLKMIGPVPSAAWLPIVMVLFATSRQASVFLIVLSIWF PLTLMVSSAIRDTDKRLVETARVLGAGEVYIMLHVALPAALPAMFTGLFMGLSSSFGA LIIAEMLGVEAGLGWYIKWAEAWGEYAKIFSTVGIFIIIFFILMDTLFRLRNRLLKWQ KGTVRW" gene 2056668..2057465 /locus_tag="Dhaf_1919" /db_xref="GeneID:7258888" CDS 2056668..2057465 /locus_tag="Dhaf_1919" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_0606 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458395.1" /db_xref="GI:219667960" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7258888" /translation="MVGKRHLLADNITRIYHDTDNKEVHALAQFNLEITRGEIVALVG PSGCGKSTFLRLVAGLDQPQGGTLSYNGEMIAGPHYDRGFVFQDTNLFPWLSVYDNIA FGLKARRVFKQEQAKVQEYIELVGLQGFEKAYPHQISGGMASRTSLARTFIQDPGVIL LDEPLSALDAFTRMAIQDEIIKIWQRDQPIIILVTHDIEEAVYLSDRVVILSSRPGKA IGEVTIGLQHPRDRTSSEFVRLRREIMAILECCNINPNYKTIKLEES" gene 2057467..2058501 /locus_tag="Dhaf_1920" /db_xref="GeneID:7258889" CDS 2057467..2058501 /locus_tag="Dhaf_1920" /inference="protein motif:PFAM:PF09084" /note="PFAM: NMT1/THI5 like domain protein; KEGG: cbe:Cbei_0604 NMT1/THI5-like protein" /codon_start=1 /transl_table=11 /product="NMT1/THI5 like domain protein" /protein_id="YP_002458396.1" /db_xref="GI:219667961" /db_xref="InterPro:IPR015168" /db_xref="GeneID:7258889" /translation="MKRNRLSLLLVLLLAAALVLTGCSGGGNATPANTTPTDNTPQTG ENSDLIPAVVGYWGGTCESPIFVAYEKGFFKEAGLDVKLLKITGDVAVLMANDELDAF ELTPDKFKPMEQGLELMIIDSLHKGCIQGAAAKESGIQSVADLEGKKVAAAIGGIAQI QIASEMVKLGKDPKKVTWLSYPNAQMEQALDQGEVDAFATYDPFPEMAVQNGKIKFYS NTFDPGLKDTLCCFIGMNKRTLDANPEIGKRMSQAFTKACEYLEEKPDEAAQMVMDKG YIAGDAALNAQLIKDYTWIAGDKKTVDDSFREIWHQIARAGALEKAPADLDTYIDGLY VQMVSFMGEH" sig_peptide 2057467..2057556 /locus_tag="Dhaf_1920" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.840 at residue 30" gene 2058525..2058959 /locus_tag="Dhaf_1921" /db_xref="GeneID:7258890" CDS 2058525..2058959 /locus_tag="Dhaf_1921" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bad:BAD_0694 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458397.1" /db_xref="GI:219667962" /db_xref="GeneID:7258890" /translation="MSSKLWWILAGLATALSLILLAGMFVFPPCSGLIETAAGGSVPM KCHWTFRAEIPVAVLLLLVSAGQFFLKEPQLRRLSSIVIIGLGAAGIAITTDAVIGIC MKEGMACHTTALFCRIIYGLLILAAGIQLFKAEDVQRHKRTF" sig_peptide 2058525..2058593 /locus_tag="Dhaf_1921" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.429 at residue 23" gene 2059001..2060203 /locus_tag="Dhaf_1922" /db_xref="GeneID:7258891" CDS 2059001..2060203 /locus_tag="Dhaf_1922" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: sth:STH855 ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458398.1" /db_xref="GI:219667963" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7258891" /translation="MRKLILHSLNKRRVQSLATMLSVTVSVAVLLALFIVYYGVTEGI ATSKQRLGADILVIPAQAETMLTDTDLLFTGAPAVIYMTEDVAGQVAGIDGVVRVTPQ FFGQTLNESCCSSTGEVRLIGFDPESDWLIQPWTDQLIGRKLAADEIIIGSNVGGFEA ASANILGNPVQVAARLDFTGTSMDQSILMDMDTVRAFSKNIAGYDHFWARYGEPETLV SALLVQVEEGRSATVAYQISRLGKFKVIEQSSVFKEIQGQMQVVFLIMLGCGILLVLA SIFQLFGRFLSMAWDRKSELGLYRALGATKQDLRRLIAGEALLLTAGGILLGLAAGGG LYRLILNLLQTQSTFPFRAPGGPTLVAGVFGLVCLFSLISFIAVSVPLGQVGKIDPSL AIQRGDID" sig_peptide 2059001..2059096 /locus_tag="Dhaf_1922" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.553 at residue 32" gene 2060226..2060870 /locus_tag="Dhaf_1923" /db_xref="GeneID:7258892" CDS 2060226..2060870 /locus_tag="Dhaf_1923" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_2927 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458399.1" /db_xref="GI:219667964" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258892" /translation="MLLSAKNIGKTYGEEVILQGISLELDGGQSLAVTGPSGSGKSTL LSLLGLMLSPTVGEIWYKNEDIGKLAEDRKDRLRNQEFGFIFQSANLIGSLTVLDNVL VPAYLAKNRQMKEKAVNLLQEFELGHRLDYYPSELSVGQKRRVAIARALLLDPAVVFA DEPTNDLDPQLCSWVGDYLLGLPAQGCALVVVTHDLGLAARADKVVAIADGHLQ" gene 2060961..2061293 /locus_tag="Dhaf_1924" /db_xref="GeneID:7258893" CDS 2060961..2061293 /locus_tag="Dhaf_1924" /inference="protein motif:TFAM:TIGR00778" /note="TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pth:PTH_0130 hypothetical protein" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase like protein, AhpD family" /protein_id="YP_002458400.1" /db_xref="GI:219667965" /db_xref="InterPro:IPR003779" /db_xref="InterPro:IPR004675" /db_xref="GeneID:7258893" /translation="MDTYYNSADLAKFATMGEEAPDLWQKFMAYYGSVFEEGALSPRE KALIALAVATAVQCPYCIEAYTQSSLEKGANEEQMTEAIHVACAIRGGASLVHGVQMK NIVKKIGF" gene 2061344..2062360 /locus_tag="Dhaf_1925" /db_xref="GeneID:7258894" CDS 2061344..2062360 /locus_tag="Dhaf_1925" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: pth:PTH_0131 Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002458401.1" /db_xref="GI:219667966" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258894" /translation="MGLLQATAQNSDSQLESLNHLNIKPFLERLQESGVLPLKSKEAI QTMQMNVGKICNLSCKHCHVEAGPLRRESMSQAVMAQGLQVMADHGIKALDITGGAPE LNPNFPWLIQEAKKLNRQVMTRTNLTVLDDEKYGWMPEFYAEHQVEVVSSLPYYTEKD ADRMRGNGVFQSSIKLLKKFNELGYGREGGSLKLNLVYNPGGAFLPAAQQGIEADYRR VLLDQHGITFNSLFAIGNFPVGRFLTFLKNSGNLQRYMEQLAGAFNPSTVQNVMCRDM VSLSWDGYLYDCDFNQMLGLPDSPQHISACRKEDLCRREITVHNHCYACTAGSGSSCG GSVV" gene 2062389..2063393 /locus_tag="Dhaf_1926" /db_xref="GeneID:7258895" CDS 2062389..2063393 /locus_tag="Dhaf_1926" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: cli:Clim_1451 hypothetical protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002458402.1" /db_xref="GI:219667967" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7258895" /translation="MMNKTIREIVDKALGGGEIGAAELRALFAVDYLSEESYLIQYAS RKMSDDACQGKAEVHAQVGLNSGSCPRDCQFCSFAAMNKIFTSSKVRPLEEIIESCLN FEAGGANAIYLMATATYKFADFLKVGREVKQALKTAVPLIANVGDFDEDEARALKKSG FDGIYHAVRLGEGVITKIDPRKRLQTIDLAAKAGLKVGTCLEPVGPEHTLEELVEKTL ITRDMKPAYSGAGRRVNIPGSPLAAHGSLSYAQMAPILAAVRLAVGYDVVGNCTHEPN KIGAMAGASLLWAEVGSNPRDTSESTVRGWTVKNTQEVLTEAGWEVLEGPSVMFGASA" gene 2063481..2064929 /locus_tag="Dhaf_1927" /db_xref="GeneID:7258896" CDS 2063481..2064929 /locus_tag="Dhaf_1927" /inference="similar to AA sequence:KEGG:WS2142" /note="KEGG: wsu:WS2142 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458403.1" /db_xref="GI:219667968" /db_xref="InterPro:IPR001734" /db_xref="GeneID:7258896" /translation="MESFQGYLFWGFLIVYGMIMMAISPRVITLGGFFRGEDKHGRAS SPFLLTASIFISWIFAKSVTNAANLGAQYGIVGGLAYASYWLCIPLAGFAIYRLRTKF AAKGLVSFLTSNYGPAAALAFSAAILIRLFNEVWSNSSVVGAYYGDGGSTAFIWGAVL FTLITLAYSMRGGLRSSIVTDTIQAVLFVVVLVFVIAWIVPKHPIGEYVSSGVWGLST GVDMLLVTLLQIFSYPFHDPVLTDRGFISEEKIMVKAFIASGVLGFFAILIFSFIGIH YTLLGLPSSGNVPAALGKVMSTAMFFFMAVIMISAAGSTLDSTFSSLAKLCAQELPAL AGKDFGNKARIIGMFVMLVFALIGNLPMIVGTDILKATTISGTMVMGLAPIFLLHGLV KPTRLGFHLSFWTGIVLGIAFTVGAVPSSIGIGGGTNGVLLAVNLYGLILCTLGYIIP GLIVSAREAKESGPSGSAHEAIAAAGEIEERA" gene 2064933..2065877 /locus_tag="Dhaf_1928" /db_xref="GeneID:7258897" CDS 2064933..2065877 /locus_tag="Dhaf_1928" /inference="similar to AA sequence:KEGG:Mlg_1624" /note="KEGG: aeh:Mlg_1624 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458404.1" /db_xref="GI:219667969" /db_xref="GeneID:7258897" /translation="MISAGRSCPADYALPPKLFEAEPCGHCDTLYVAGGIYGNPEALK TLALLADEENASLVVVNGDMHWFDKTAQDFIHTERLAEPYIKLIGNVEAELRRETDIG AGCGCAYPDCVSQEAVERSNLIHRELKEALAFLPEYKAALARRPGVAVVEVGKQRVAI SHGDEQFLAGWGCSREFLAEAGRQTELARWMSERRIDVLATTHTCAPAALAWGHGAVI NNGAAGMPNFKGQFGGLITRIAALPHQDALYRGKVGGLYIEALPLRYDHEAFIRWFDD LWPQESPGEVSYRERIVQGTEDEIEDALLGGFLRCNNK" gene complement(2066081..2066836) /locus_tag="Dhaf_1929" /db_xref="GeneID:7258898" CDS complement(2066081..2066836) /locus_tag="Dhaf_1929" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF820; KEGG: swo:Swol_1625 hypothetical protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002458405.1" /db_xref="GI:219667970" /db_xref="InterPro:IPR006442" /db_xref="InterPro:IPR008538" /db_xref="GeneID:7258898" /translation="MRINATDLQNAFGKYLALTEKEDIIITKNGRSVAKLTRYNEPDY FLLHEEALKYKTTRKISYEEYRELVESSDQRYELIDGEVYLLASPAFDHQVAVNEIAW HFYNYFKGKPCRSLTAPLDVRLFGYATKFEEDPNVVQPDIVVVCDEEKVNADNRYEGI PSLVVEVLSPSTKGKDMVTKLNLYMKSGVREYWIVDLAEQSITHYAFSPERDIEGLTI FREDETVRSPLFPGLEIHLPDLFGEIRPKSRQD" gene 2067271..2068230 /locus_tag="Dhaf_1930" /db_xref="GeneID:7258899" CDS 2067271..2068230 /locus_tag="Dhaf_1930" /inference="protein motif:TFAM:TIGR02666" /note="KEGG: amt:Amet_4096 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein A" /protein_id="YP_002458406.1" /db_xref="GI:219667971" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010505" /db_xref="InterPro:IPR013483" /db_xref="GeneID:7258899" /translation="MLDSHGRDINYLRISVTGMCNLRCSYCMPEGGIKKKAHKEILSL ETIEQIAFSAVDLGFQKIRITGGEPLVRKGIIDVIHQIAQLKSRGLKDLGLTTNGTLL SGYADELKKMGLTRVNISLDSLDAEKYSQITRGGKLSSVLEGIQAAKEAKLWPLKINV VLIGGFNDDEIEEFVNLTREDDVEVRFIELMPIGEASGWDREHFLSGTEILKRVPQLM PLAVKGQGAVARLYKLPNSKGRVGIISPLSNHFCNYCNRIRITPDGKLKPCLHSDLEL DIRNYGEDYERFLLDGVFAKPNRHSMQNEDYEPVLRNMNEIGG" gene 2068373..2069299 /locus_tag="Dhaf_1931" /db_xref="GeneID:7258900" CDS 2068373..2069299 /locus_tag="Dhaf_1931" /inference="similar to AA sequence:KEGG:pE33L466_0142" /note="KEGG: bcz:pE33L466_0142 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458407.1" /db_xref="GI:219667972" /db_xref="InterPro:IPR010106" /db_xref="GeneID:7258900" /translation="MRKAGESMKEFISLKIDYAFKLIFGKEGNEAILIAFLNAALKLP QERRIEAITIMNPELNKEYQGDKKSILDVRAETSEGMQINIEIQLSNQYDMEKRSLYY WAEMYSRQIREGMAYKELAKAVTINILDFNYLKQTSNYHNVFHLYEDEEKFQLTDALE MHFMELPKLLAKWRNREISPWENELVRWLLLLEGADNQEILQTLEEIAMKDPVLHQAM TAWEETSDDPRIREAYFDRRKAVLDEKAAIREAELRLKEALEKGRAAGIAAGKAEGKA EVAKKLLDLGFEITKVAEATGLSEKDIRSLKD" gene 2069436..2069699 /locus_tag="Dhaf_1932" /db_xref="GeneID:7258901" CDS 2069436..2069699 /locus_tag="Dhaf_1932" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458408.1" /db_xref="GI:219667973" /db_xref="GeneID:7258901" /translation="MEESLEQSLEAKLGRVIADEILEQNHYDDQVAAAVRQVKQRYQD SQICGSQAPLRETVQTELAREPVNLWKDVVEGVSQGIIKNYRF" gene complement(2069773..2070354) /locus_tag="Dhaf_1933" /db_xref="GeneID:7258902" CDS complement(2069773..2070354) /locus_tag="Dhaf_1933" /EC_number="3.2.2.20" /inference="protein motif:PRIAM:3.2.2.20" /note="PFAM: methyladenine glycosylase; KEGG: ssa:SSA_2133 3-methyladenine DNA glycosylase, putative" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase I" /protein_id="YP_002458409.1" /db_xref="GI:219667974" /db_xref="InterPro:IPR005019" /db_xref="GeneID:7258902" /translation="MPNELKRCDWAVKSKLEQEYHDQEWGVPVHDDKKLFKMLILEGK QAGLSWATILAKMATLCAAFDDFDPAILVTYDQAKVEELLQNNGIIKNRQKVNAAISN AKAYFTICEQFGSLDNYLWSFVDHKPIVNSWLTLEQVPSSTSVSDAISKDLKKHGFKF VGTTTIYAFMQGVGMVNDHLVSCPFYQRSQLSS" gene complement(2070406..2072349) /locus_tag="Dhaf_1934" /db_xref="GeneID:7258903" CDS complement(2070406..2072349) /locus_tag="Dhaf_1934" /inference="protein motif:PFAM:PF05569" /note="PFAM: peptidase M56 BlaR1; KEGG: cpy:Cphy_2068 peptidase M56 BlaR1" /codon_start=1 /transl_table=11 /product="peptidase M56 BlaR1" /protein_id="YP_002458410.1" /db_xref="GI:219667975" /db_xref="InterPro:IPR008756" /db_xref="GeneID:7258903" /translation="MLGNILLVSLTLSPVIVLLLMISPWLHKRYSAQWRYLVWLVLAL RLIIPWRFELPDAPVNLPAPPQQTIMFQQDDRPGLFMGNSHLENSHNPPGTASGSAPV SASDSASAPVSASISDSASDSVSTSSLAPADNTSVITLQELLLILWALGAVSFFLFHL ISYTRFRRKIKPYCRKTDSAVPDSVFESVLLDLKIKSRPQLLNCSKIASPMLTGFFKP AILLPDLEYTREELSLVLQHELTHYKRGDTWYKLLLLAANSVHWFNPLIYFMVKAANR DLEYSCDDLVVKNSDLSFRKEYSLTILKTMQNQQTPVLSTGFSASGENARSRFANILD GQNKKRGIWALVLVLGLAAVSSTLVACNQVQESVNSLESTNIQESANSQENNPVRPPG SYAENLYQYKGTDVDDKARVSALVQALQFTDLPVQSIEIKTDSEPYRITVKYQVGSRA DYRFPQDTLTGLSRNAAVLFSLIPKVDHIFLDLYDEYGYFSGSPYSREDLDTYYGMDY FTADQVNEAADSLESFTNYLDQVSALKNAEEFYSEDKLIRKQHEERMKQIYAVIGDDC ELVATSFITNNPMNFQGTLTEAITVSPEIRKLVEQNNLLTQYKDKEITFSVDISRNFK IDGPYTNYLFAFDGEKMIAYMEL" gene complement(2072350..2072718) /locus_tag="Dhaf_1935" /db_xref="GeneID:7258904" CDS complement(2072350..2072718) /locus_tag="Dhaf_1935" /inference="protein motif:PFAM:PF03965" /note="PFAM: Penicillinase repressor; KEGG: cpo:COPRO5265_1461 penicillinase repressor (regulatory protein BlaI) (beta-lactamaserepressor protein)" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="YP_002458411.1" /db_xref="GI:219667976" /db_xref="InterPro:IPR005650" /db_xref="GeneID:7258904" /translation="MTDLQKIPDSELEIMMIIWDADEGVTSDYIMDRLDKTWQKTTVL NFLSRLGDRGFLTVHKQSRFNVYEALVKKEDYLQKESKTFLQRMHHNSLTSLVASLYD GAGISKEDLQELKKFIEEAE" gene 2073141..2073248 /locus_tag="Dhaf_1936" /db_xref="GeneID:7258905" CDS 2073141..2073248 /locus_tag="Dhaf_1936" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458412.1" /db_xref="GI:219667977" /db_xref="GeneID:7258905" /translation="MAKENKEEKDLNYNELISNVNFLVIKVILRRNAII" gene 2073245..2081899 /locus_tag="Dhaf_1937" /db_xref="GeneID:7258906" CDS 2073245..2081899 /locus_tag="Dhaf_1937" /inference="protein motif:PFAM:PF04122" /note="PFAM: putative cell wall binding repeat 2-containing protein; KEGG: ctc:CTC02093 N-acetylmuramoyl-L-alanine amidase/putative S-layer protein" /codon_start=1 /transl_table=11 /product="putative cell wall binding repeat 2-containing protein" /protein_id="YP_002458413.1" /db_xref="GI:219667978" /db_xref="InterPro:IPR006626" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7258906" /translation="MTKEGNKRRGKGARGLVSLILSLLLLLQGFVGSTPVYADPGSKV FTFDIANGLESFSDPTHAQWTEGGYTLDFSVTGSSTQMLGSYEFDDRESWTVLNEVEK GPIVLTVSIPGKVFDLKSFDLWNELSDEDAEYTISTNKGGSDSGGIALDNGAPTLKQL NFSGADFTGISSFTLTYTGMEYAIGYSIDNLDLHNITDLTTDPLSNDAGLSSVLGQII TAGGEAGTSGEPKTAAITVTNTTTTVAAINIVKHDAGAIVTFYGTDSTFATEATGSVN LTAGATTDIYIKVEAADETTLYYKVTITRDAAAQTPQPPTVTGGAEYIDVTNVEAGAE LKLYIVGGQLASTTYRDLGNGTYRFEDVLPHSSWYYVTKSVGGQESLSSFVNPTFRIP VATKGVESVDVTNVSSNATIRLYKVVEGTDPDILISESPTPVGNGTYRFENITPDSAG FYVTQYANTIESANCPFFGVDLRTPSISGGNGQITVSNIFPGANITLYDPNGVIQTAN NVTTATHQFSNVVPGNGYYVQQTINGVISSPSNSATTYSSGPQFVGGTPTIAVRQYPN PTDLRDQLYVSDLDVGQTLTWTVVSGPSHGTLDGFPATASTNGSGGIYGTVGSTDTRI PTAVTYTPAQDYVGDDSFTIQVSDGTATATRTIQVGVNHTSGTSVNAMNSAELTEAIN NPAVATIILTSNTTYQIGGAEINRPLTIRGNGATIEVLSGVGQSFDDQTIYHLGMPDK DGNRRYRGNIFWYVKDGGSLTVENLTLRNAAITENAQGLTGVFAAILLNDDADLDVSG VVFDNFWFKNSKLAEQNNLLAAQGLGGYTTYSDLSYGVYGDYNCTGNITIDHSIFSSS NAFRDAVHIYNANNVTLDYNTFTGTNYPDRLRESDAFEYGMYLYGGNYTVTHNTVRYY DSYKIPGYSSAGIALLPYNDTDATLEDNTIQGNTVGLEIVGGWEALTPAPNVTINQIE LDTEDNGFKIGEALKASNTISGSTGADIFIKLDQDDADEAFVYYAPFLSVSGTNTTEP TLNFAQTAGAIELVSSAITIEVEKSEDNGLSWTAASVEGTLDNSSTSAVVNLEANKTY TLRVKMTHNNGQTPNAVITGYSNAVTFTTASGISLVTAPEFTFTAATEGYGPQPVYSV TVMNTGAEGTGALTITLSGENPGSFTLDQTSISDIAAGSNTNFTVRPNTGLAIGTYTA TVTVSGSTVMAQSFNVSFTVSPAGATYTATIYHDIDNLAADVTGSVELKQGTTTITAS KSETGIGIYTASLPNGYYSIYVNGVDTGRMLNISAGNSTATLRYYTVSFSATPSGTAT GSSINATAGGTAISNGAVVLAGTSVAITASGTGAGSYTYAWSGGGTNGQTTGTLNIPF LNSTVNATCTVTGSGSPPADPDYRINNESYNWSGSDQTIVLAGNSDTLTIFKAPTAVV KIDVQSDDGSNVTIDGNSIPCINTYVVVSNDITLNLHNLDITAPAGSSEWRENTGLLL KKTDTEADTMTIDVSGICRIKGNDSGPGIASEQDQHLLITGTGTLYATGGDSAALYGS DGINVISAIPFVTASGAKLTIDGGVTVNATGGNNTAGVGGRGILIGWGNIAIVNGTVN AIGGAGLVTNASGGNGIEASFPSTDHSKGGKITITGGVLTASGGNSANNYGGVGVYAF TGLEISGGMVTAAGGNSNAGPGGAAIYAREGNMIISGGTVIATGGGSDAGSGNTAVNV YDGNLEISGGTVTVTGGSGHVNGSHAVYAHFGTVTIGNGANVTASGGNGSTGLGGVGV RANGNSSGNTVTIANSAGNVYIRGGEGASEQRASIMGKYVYIGTGNIGPVVMEGTNPP RFIKNMFEGDDVYLVKVTTNPAAAVEIRCEVSGGEAADYTYRAVAASDGTASLWLPEG TRILSAAGYIDANVNVVSNDTQNSGTLNSTAGMMNVGSVKVASFVASQTPIPATLEIT MSDIGLDADAFAISNDTTPTTVVTVNSATYANGKYTLSVSGMTYYDSYTLTITKEGYD TYTNSTFYGALAAGKDLDLVNEPNMFPTFSRALTNPGMVTISNSTYAKDTRLYSGPVY TAIDTNNGHPDNGNKARFIGIFVNAPEGAKAVKTLRLDGQMLKVAEDSLIDSNPNYQE TVASGKAANHNDYWKTIAFVPLYSQIASARQSDNSRILEDPADRFRIIEWYDNEECTG EPIKVTRLMVKVEYTGTPASNDAGIATIAGTAITAGNQAGTKEAPKTASVNVAHAKSS IGLTDIGAAANATVKLYTDAEFSQEITGSSTLALTSGGATTAYIKVTAQDGTTVQYYA VTINREASSRGDNDDDSSPSTSNPTPTQPTTPANSAAIPVNVTDNHANSTTKTINAQI TNDSNGTKTLSFKSQEAILEKKPDGTRTEFGNLDKVGFAPDQGTASSISLSADGTIQV KNLANGTESQFKVTFDLGNGQKIAIGRIEVKVDKDGAISLTSTLIDPYGIILDSATNQ PITGVDVKLYYADTARNRAGGKTPDTLVALPTLTGFEPNDNANPQVSNSYGAYAYMVF PESDYYLLATKAGYERYKSPIITVEQDIVKWDFKMHQSLSGVQRLFGSNRVETAIAIA QANYPGKVANVVLATANNYPDALAGSVLAYKLNAPLLLVGSTAQDQESLLNYLKEHVE TAGTIIILGGTGAVPAAVEETIQAHGYSQVVRLGGANRYETALKIAEELDVEQGRPVI LAYGGNYPDALSVSSAAAAIQSPILLVEKNGISEGVKNKLAQIKPIKVYIIGLEGVIS QQVEDEVAQLTSLKQENIIRIGGPDRYQTSLAVAKYFNLSGKNIGIATGNNFPDALAG SVYAANHNAPILLLNDTIPNDVMDYLKSREMTGATIFGGEAVINAEIEQKLRELIK" sig_peptide 2073245..2073361 /locus_tag="Dhaf_1937" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 39" gene complement(2082012..2082722) /locus_tag="Dhaf_1938" /db_xref="GeneID:7258907" CDS complement(2082012..2082722) /locus_tag="Dhaf_1938" /inference="protein motif:PFAM:PF04239" /note="PFAM: protein of unknown function DUF421; KEGG: amt:Amet_3726 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF421" /protein_id="YP_002458414.1" /db_xref="GI:219667979" /db_xref="InterPro:IPR007353" /db_xref="GeneID:7258907" /translation="MDYLIIALRIISVMALFLFLVLKTGRRKIAELPVYDFLSIIVLG SVIGADIAEPNIPHLPVLFAVVLIIALQYLVSSLLINNKKIARKITFGPTVIIQNGQF IKANMKRLKYSIETVLMLLREKDIFDLNEVEYAIVEGSGSISVLKKPQYLPLTPSDMK LKPGAKGLPLPLIIDGKVQDGNLQQLKRDRSWLAAELAQAGIPDFNEVFYADCTREGR LYISKIVQAQNFHDDFTL" gene 2082903..2083523 /locus_tag="Dhaf_1939" /db_xref="GeneID:7258908" CDS 2082903..2083523 /locus_tag="Dhaf_1939" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: tde:TDE0339 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458415.1" /db_xref="GI:219667980" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258908" /translation="MVRDGEQTREAILKSAQAEFLAKGFSAASLRKIATGAEVTTGAL YRHFTDKAALFEALVAPCFHGFIQMFRQQGEDYLRGQDSYDFDHNWSSSEQSLLRWTE YIYDHLEVFKLLLSAAEKTAYESFVHILIEMEVDMTLEYIRLAREKGYMIKDVSREVI HIFVNAQFSAFFEMVLHDVPRERAVEYTSSIFRFFAAGWKKLFIGA" gene 2083792..2085606 /locus_tag="Dhaf_1940" /db_xref="GeneID:7258909" CDS 2083792..2085606 /locus_tag="Dhaf_1940" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0073 predicted transport protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458416.1" /db_xref="GI:219667981" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258909" /translation="MSSAGKQKTGTARLLELAGTKKPLIIGAGVLSALASIVSFVPYI AIYLIVKEVLTALPDLEVLNSALMIRYGWLAFGGVVGNILLYFGALSCSHLAAFGTLY ELKVNFATHLAKVPLGFHVMIGSGKLRKITDDNIEKVEGFIAHQLPDLVAAFVAPVVM IVILLAVDWRLGLAALAGVIVAFLIQMSVYGNEGSKAMMKKYQASLEDMNNASVEYVR GISVVKAFRQTVYSFRRLHDTIKAYTSMVIPYTLSWQNSFSAFVALVNNIYLFVVPVG IFIGMRTTDYIGFLSNFIFYLIFVQSVATILMKIMYVNGNAMKIIGGVEAMDRVLAEP ELPQPANPQTVTQYDVNFGDVVFSYDKDKKTEALSGVSFVAKQGQITAIVGPSGGGKS TIAHLIPRFFDVSGGQITIGGVDVRQMNSHYLMEKVTFVFQDVFLFKQSVMDNIRMGN PQASDQEVREAAQAAQCHDFIMKLPQGYDTVIGTRGVHLSGGEKQRIAIARAIVKDAP IVVLDEATAFADPENEHLIQKAFERLMKDKTVIMIAHRLSTVQGADKIVVVEEGKVCE EGTHEELLARGGKYAAMWKTYMDTASWTMSQEEVFAHA" gene 2085599..2087344 /locus_tag="Dhaf_1941" /db_xref="GeneID:7258910" CDS 2085599..2087344 /locus_tag="Dhaf_1941" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0072 predicted transport protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458417.1" /db_xref="GI:219667982" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258910" /translation="MPKLQAAFMLTDKGYKDLKKAIAACTLSNFSMMLSFIVMIQMII ELIKPLSGGEVAWTKMWMLLGAGILAALLIFLSLRNDYKKTYIVSYLESENTRVTLAE QIRKLPMSFFNDKDISEVTTHLMDDVATSEHVLSHVVPQIAANAISVTVICVMMAFYD WRMALAIFITVPLAFAIIFISRRFYGKLHKKHLEAKMAAAGQVQEYIEGIKVIRACNL DGEKFSALEKALRTMKKLAIAMEFGTGVFVTGAQVVLQAGIGLTVLVGTTLLTGGQIE FVPMLLYMLVVVRIYGPIVTELALLPEFLYHRIAVKRMQKLMSIQPMEGNKELELKDF TINFEKVDFQYNREGEGAIHNMTTTIPAGGITALVGPSGSGKSTVSKLIARFWDVSGG RITVGGVDVRTLDPEHLMSYMSFVFQDVVLFNDTVYNNIRIGNMKASREEVLAAAQAA RCDEFISRMPEGYDTLLGENGSTLSGGERQRLSIARALLKDAPIVMLDEATASLDPES EAAIQQAISRLIRGKTVIVIAHRLRTIRNADKIIVLDQGRVAEEGTHESLLEKNGLYK KLFNIQQESLGWSVR" gene complement(2087469..2088194) /locus_tag="Dhaf_1942" /db_xref="GeneID:7258911" CDS complement(2087469..2088194) /locus_tag="Dhaf_1942" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: mma:MM_0449 SAM-dependent methyltransferase" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458418.1" /db_xref="GI:219667983" /db_xref="InterPro:IPR013216" /db_xref="GeneID:7258911" /translation="MYTFTNQFISNDKNVEFLKAAMMGPNAMRLAEELSSHLNIDETM RILDLGCGCGLSTLLLTKKYGASVFAADLWISPTENYERFQSLGIADKAVPISVDATK GLPFAKGYFDLLFTVDAYHYFGDTAAMLPSLIPFVKKGGYIAVAIPGLNYEFEDKVPD EMQPFWNSEMARTLHSLDWWKDLWKKAEGIEMVDSREMACCREAWQEWLTAYHPIVAE DIKMMAAEDGKYFNLVQLIAKVL" gene 2088610..2088831 /locus_tag="Dhaf_1943" /db_xref="GeneID:7258912" CDS 2088610..2088831 /locus_tag="Dhaf_1943" /inference="similar to AA sequence:KEGG:FMG_1134" /note="KEGG: fma:FMG_1134 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458419.1" /db_xref="GI:219667984" /db_xref="GeneID:7258912" /translation="MMLGKEKITLFGLGLMAGTFGLKLATSKTAKKAYVKTLATGLKA KAECDKMIEEAKANVDDIMAEAKLVSEHE" gene 2088856..2090943 /locus_tag="Dhaf_1944" /db_xref="GeneID:7258913" CDS 2088856..2090943 /locus_tag="Dhaf_1944" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD0591 putative cation transporting ATPase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_002458420.1" /db_xref="GI:219667985" /db_xref="InterPro:IPR000150" /db_xref="InterPro:IPR000695" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:7258913" /translation="MNYTISHDIPGRIRFKFPGGGFSQEETAALCHSLAKNSFIHKVQ PYRLSGSLAVNYEEGCREEVIEAVAALKRAELKDYELPVGEVPYNAYTDQYLNQLVYM IGKRVLTKLYMPSGLKAFWMMKGALPYVLKAVKRLWSREKLNVDVLDAAAISVSILKR DYDTSGSVMFFLSVGNLLEEWTHKKSRDDLAKGLALRVNSAWVRRNGQESLANLKDIA IGEQVVARMGSYIPVDGVVLQGEAMVNQSTMTGESLVQRRIPGDTVYAGTVIEEGELL IGVTALESETKLNQIIKLIDESEGLKAAVQSKIENMADAIVPYSFLIAGGVYLATRSV ALASAALMVDYSCALKMTTPIAILTAMREGTQHGFVIKGGKFLEEAALVDTIVFDKTG TLTEAKPYVVDVIGFGGYRRDRVLRLAACLEEHFPHSVAAAVVAKANEKNLKHREMHA NVEYIVAHGIASYVEDKRVVIGSGHFVFEDEKVEVTAAEQEVIDKKAEAYSLLFLAVG GRLAGMLCIEDPIRPEAAGIVGELKALGIHHIALLTGDSEKAAQAIARRIDADDYRSQ VLPAEKADYINSLRRQGRRVMMLGDGINDSPALSSANVGIAMKNGADIARDIADVVLT QGNLKSIVALRRLSSLLIRRIENNFRFTVGFNSGLLTLGVLGIISPGSSALLHNLSTV ATGVSSMRNYLPE" gene complement(2091045..2091839) /locus_tag="Dhaf_1945" /db_xref="GeneID:7258914" CDS complement(2091045..2091839) /locus_tag="Dhaf_1945" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0323 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458421.1" /db_xref="GI:219667986" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258914" /translation="MLKIINATKVFLSGTPNEHIALNNISLSLAQGEFVTLIGSNGAG KSTLFNAIGGTFWLNRGRIFLEEENITYLAEHKRAAMIGRLFQDPLKGTAPDMTIEEN LALAYNRQGRNGLRLGVHPQDVKIFREKIAQLDMGLENRLRTKVGLLSGGQRQALSLL MSTIAGPRLLLLDEHTAALDPAAAEKIMAITRDIVSQEGITTMMITHNIQTALTTGSR TIMLDQGKIILDLAGEERKEMTVPRLLELYSQQSKTAFANDRMLLS" gene complement(2091832..2092731) /locus_tag="Dhaf_1946" /db_xref="GeneID:7258915" CDS complement(2091832..2092731) /locus_tag="Dhaf_1946" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: swo:Swol_0324 hypothetical protein" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_002458422.1" /db_xref="GI:219667987" /db_xref="InterPro:IPR001851" /db_xref="GeneID:7258915" /translation="MTLLLGSVQLGLIYGMLALGIYISFRILNIPDLTADGSFTLGLS VSAVMTLAGHPFLGILLAVAAGAAAGTVTGLLQTKLEIHPILAGIITMSSLYSINLYI LGSRSNLSLIGSDSLFSPLAWLPANKEVLKTLVPFIVCFLCAAALIWFFKTHLGLCIR ATGNNEDMVRASSINVDAMKITAIAISNACIGLSGAVLAQYQGYADISSGIGIMVVGL ASAIIGEAIFGRRSLTIGLLSAIFGSLIYRFIIAAALKSSIFPAYMLRVVSAVIVVIA LSLPVIKKHLELRSMRKQVEQDA" gene complement(2092767..2093750) /locus_tag="Dhaf_1947" /db_xref="GeneID:7258916" CDS complement(2092767..2093750) /locus_tag="Dhaf_1947" /inference="protein motif:PFAM:PF04392" /note="PFAM: protein of unknown function DUF534; KEGG: swo:Swol_0325 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF534" /protein_id="YP_002458423.1" /db_xref="GI:219667988" /db_xref="InterPro:IPR007487" /db_xref="GeneID:7258916" /translation="MKKTLAKILTLMLLLAAAGCSAETTPKNSDSANAIQVGLVQLAD NGAFTDMREGFIDKLRELGYTEEQLVIDYKNANGDTATLNSIFQTMVDAQKDLIVTIG TPATQAIVNMDSGIPVFFISVSNPVGAKVITDMSTPDKHATGTSNAIPVSEMFKLSDQ LTPDRQTYGLIYNTGEVNAVTTIEQAKNYLDSVGLNYKEAIVTSSSEVQQAAESLVGS VDAFFIPNDSMVQSAMPQVAEIAKQAKLPVYGSSAVMVQSGAFATVSIDDITIGGITA EMAVKFLKGTPIEQIPAITVSDFTTVINQSTADAIGVTIPQDILSHAAIIE" sig_peptide complement(2092767..2092835) /locus_tag="Dhaf_1947" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 23" gene complement(2094193..2095026) /locus_tag="Dhaf_1948" /db_xref="GeneID:7258917" CDS complement(2094193..2095026) /locus_tag="Dhaf_1948" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002458424.1" /db_xref="GI:219667989" /db_xref="GeneID:7258917" /translation="MGETSLLIFSFCMQAAIGIMFFITISKQLYQDKTFKTASYAAAG LSLAGILASLLHLGRPMAFLNSLSHLGTSWLSNEALLCGFFAGIAVLYALVQHFKPGN ASLDLLLRWGGSLVGLVAVFSMGKLYSSTTVPVWQGANTFIDFYTTTLAIGALLFIAA SLKELQNVDKKIYGAIVLAAVIFQAVSAVPHALSLGKAGMAAQTSAAILSSMTMVIAL KWLLVLGGAVLLFWPSKQKSGSGFKAGHVYLACALLVFGELIGRYVFYAAIVTTTIGI T" gene complement(2095029..2095604) /locus_tag="Dhaf_1949" /db_xref="GeneID:7258918" CDS complement(2095029..2095604) /locus_tag="Dhaf_1949" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002458425.1" /db_xref="GI:219667990" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258918" /translation="MSQYGFYFDMTSCIGCRTCQVSCKDKNDLNVGTIFRQVKAFETG SYPKPGIFHYSGTCNHCENPKCVEGCPTQALHKLENGIVDHDKAKCIGCRYCTWNCPY GVPQFIPELGQISKCNMCKDLIEAGENPVCVDACPMRALEWGDLEELKAKHGDSVQEL PFLPAAAVTKPALLIQAKNNAKQNDFKAKEI" gene complement(2095624..2098200) /locus_tag="Dhaf_1950" /db_xref="GeneID:7258919" CDS complement(2095624..2098200) /locus_tag="Dhaf_1950" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mta:Moth_1389 trimethylamine-N-oxide reductase (cytochrome c)" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458426.1" /db_xref="GI:219667991" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7258919" /translation="MDFIDKITGAKLSRRSFILASAAATASLSLAGCGSSLTQATADQ AAGKEGKWITAACWHNCGGRCLNKAYVVDGVVIRQKTDDTHPDSPDYPQQRACVRGRA QRQQVFGADRLKYPMKRKNWEPGGGKKELRGQDEWVRVSWDEALDAIAGEIKRIKAEK DNRSLFADGGPVSKVLALYGGYVPHWGTTSRGNWTYTPDVIGYSPESNSGINDRLDMR NCDTVIMFGLNPAWSSAGNPAYNFLQVKKAGAEFIAVDPYYNDTYGLLEADWIPCRPV TDTALLLGVAYTLLEEDDPVHNPLIDWEFLKKNTLGFDAESMPEGTNPQDNFKDYVLG TYDGIPKNAEWAAEISGVAPDRIRYLARAMNKNKKVAILTGWASARTQNTDNLPQLFM TIGAMTGHLGKSGHMCGISCHSRSSNGGDMLVKPGSNKLPSIKNPVDDSFNDTEMWRA IVDGKYNWTGHQKYYKGETRDIDIRLIYHDSGAALQSRDGMTKGIEAHRKVDLVVSHG QFLTTNAKYSDFVLPVTTEWEKIGGFLTGNREMVIMYSQITEPMYECQSDEWIAIELA KRLGIDPDQAFPIDAKQQFFNQIAGATTTHEDGISKIPMVTITEADIAEWGVQGKPQE GRIGLKEFQEKGIFQVERKPGDNYGFIAFKEFRDDPAANPRPNSASGKMEIYSQVLGD TINNLGYSEIKPIPTHIPPVEGYEATFKDWQGKIKGDYPYQVINPHYLRRSHTVFDNV QWLRETWPNPVYISTQDAKEKGLADGDTVLLTSQHGKTLRTACLTDRFMPGVIGLPHG SWVDMDEKTGIDTGGADNILCGPVSTGQGVSGWNSCVCNMEKYSGASLIADVQKPQRI IL" sig_peptide complement(2095624..2095752) /locus_tag="Dhaf_1950" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.416 at residue 43" repeat_region 2098751..2100259 /note="ISDha5" gene 2098906..2100258 /locus_tag="Dhaf_1951" /db_xref="GeneID:7258920" CDS 2098906..2100258 /locus_tag="Dhaf_1951" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: pth:PTH_2669 hypothetical protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002458427.1" /db_xref="GI:219667992" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7258920" /translation="MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVV FQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVGRF EKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSF APLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSPKPDTVVQMLERALKAGFS ADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPK AEILGSVRVHTPSGLALKVVFVQNRNNRREWLAILTTDLSLETTEVVRIYGMRWSIET FFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFA DEVMDLDLKTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES" repeat_region complement(2100298..2101890) /note="ISDha3" gene complement(2100468..2101712) /locus_tag="Dhaf_1952" /db_xref="GeneID:7258921" CDS complement(2100468..2101712) /locus_tag="Dhaf_1952" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: drm:Dred_1795 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002458428.1" /db_xref="GI:219667993" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7258921" /translation="MQDKDTTQSTFMQAFQPFFSKDLWETIHREVPGLDLRSQKLTTN QLTLLISHAQLQEYRALRKISTSVHHDSLGQAIGLESISHSQISRRLKTLPTQVPEML FKGTLHNVAQKQGYGKIRQQLGKLYMIDASTMSLCLSRYPWAVFRKSKAGVKMHLRLS FDAMAVPDEVLVTPAKTADRKKLDELIVQDQEALNIFDRGYVDYKLFDDYCEKGIRFV TRLKNNAVIEFTGVERPVKEDGLIEEDVDVILGAGSRKMKHTLREVTIDDNVHEPFTI LTNDFNLSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVINQILLALMMYC LLVLLKLEAGYPRDLLTLQRLLIACLFERYEEFLEKLRRRRRKGSKRIRYEEIYRMTE HSILKEEETQWLDDLTYDPVIL" gene 2102094..2102303 /locus_tag="Dhaf_1953" /db_xref="GeneID:7258922" CDS 2102094..2102303 /locus_tag="Dhaf_1953" /inference="protein motif:PFAM:PF03681" /note="PFAM: protein of unknown function UPF0150; KEGG: tye:THEYE_A0309 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0150" /protein_id="YP_002458429.1" /db_xref="GI:219667994" /db_xref="InterPro:IPR005357" /db_xref="GeneID:7258922" /translation="MHKYEIIIYWSDEDEAYIAEVPELPGCCADGKTHQEVLRNVEIV INEWIETAKSLGRTIPKPKGRLLFA" gene complement(2102393..2103226) /locus_tag="Dhaf_1954" /db_xref="GeneID:7258923" CDS complement(2102393..2103226) /locus_tag="Dhaf_1954" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002458430.1" /db_xref="GI:219667995" /db_xref="GeneID:7258923" /translation="MGETSLLIFSFCMQAAIGIMFFITISKQLYQDKTFKTASYAAAG LSLVGILASLLHLGRPMAFLNSLSHLGTSWLSNEALLCGFFAGIAVLYALVQHFKPGN ASLDLLLRWGGSLVGLVAVFSMGKLYSSTTVPVWQGANTFIDFYTTTLAIGALLFIAT SLKELQSVDKKIYGAIVLAAVIFQAVSAVPHALSLGKAGMAAQTSAAILSSMTMVIAL KWLLILGGAVLLFWPSKQKSGSGFKAGHVYLACALLVFGELIGRYVFYAAIVTTTIGI T" gene complement(2103229..2103804) /locus_tag="Dhaf_1955" /db_xref="GeneID:7258924" CDS complement(2103229..2103804) /locus_tag="Dhaf_1955" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002458431.1" /db_xref="GI:219667996" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258924" /translation="MSQYGFYFDMTSCIGCRTCQVSCKDKNDLNVGTIFRQVKAFETG SYPKPGIFHYSGTCNHCENPKCVEGCPTQALHKLENGIVDHDKAKCIGCRYCTWNCPY GVPQFIPELGQISKCNMCKDLIEAGENPVCVDACPMRALEWGDLEELKAKHGDSVQEL PFLPAAAVTKPALLIQAKNNAKQNDFKAKEI" gene complement(2103824..2106397) /locus_tag="Dhaf_1956" /db_xref="GeneID:7258925" CDS complement(2103824..2106397) /locus_tag="Dhaf_1956" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mta:Moth_1389 trimethylamine-N-oxide reductase (cytochrome c)" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458432.1" /db_xref="GI:219667997" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7258925" /translation="MDLIDRITNAKLSRRSFILASAAATAGLSLTGCGSSLTQATADQ AAGKEGKWITAACWHNCGGRCLNKAYVVDGVVIRQKTDDTHPDSPDYPQQRACVRGRS QRQQVFGADRLKYPMKRKNWEPGGGKKELRGRDEWVRISWDEALDSIAGEIKRIKSEQ GNRAFFADGGPAAKVLALYGGYVANWGTTSLGSWTYTPGPVGFSSSSGDSINDRLDMR NCDTVIMFNMNPAWSSAGNPVYHFLQVKKAGADFIAIDPFYNDSYGLLEADWIPTRPA TDTALMIGVAHTLIVEDDPVKNPLIDWDFLKKYTIGFDADSMPPGTDAKDNFKDYVLG TYDGVPKNAEWAAEISGVAPDRIRYLARAMNKNKKVALLYAWSAGRTQNADNLPQMAM ILGAMTGHMGKSGHMCGVSCHSGAANGGDTLVSPGKNGLPTVDNPVKDSINHTEMWRA IVDGKYNFTGNKKFLKGEMRDIDIRLIYHDNNARLQSADGMTKGIEAHRKVDLVVSHG QFLTTNAKYSDFVLPVTTEWEKIGGFLTGNREMLIMYSQITEPLYEAQSDEWIARELA KRLGVDASKAFPIDAKQQFFNQIAGSTVILPDGKTAAPLVTITAEDIAQWGVQGKPQQ GQISLKEFQEKGLYQIERKPGDNYGYIAFKDFCDDPEANPRPSASGKFEFYSQVLADT VNAMGYSEIKPIPTHIPPVEGYEATFKDWQGKIKGDYPYQVINPHYLRRSHTVFDNVQ WLRETWPNPVYISTQDAKEKGLADGDTVLLTSQHGKTLRTACLTDRFMPGVIGLPHGS WVDMDEKTGIDTGGADNILCGPVSTGQGVSGWNSCVCNMEKYSGASLIADVQKPQRII L" sig_peptide complement(2103824..2103952) /locus_tag="Dhaf_1956" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.409 at residue 43" gene 2106790..2107770 /locus_tag="Dhaf_1957" /db_xref="GeneID:7258926" CDS 2106790..2107770 /locus_tag="Dhaf_1957" /inference="protein motif:TFAM:TIGR01188" /note="KEGG: aas:Aasi_0867 hypothetical protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="daunorubicin resistance ABC transporter ATPase subunit" /protein_id="YP_002458433.1" /db_xref="GI:219667998" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005894" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258926" /translation="MSNAIEITDLRKSFSVKAKGRIIKVEAVRGVTLAVKRGEIFGFL GPNGAGKTTTLRMLTTLLPIDEGKGTICGYDLVGQPQEVRRHIGYVSQLGGADWEATG RENLILAGQLYGMKRHDAEQRTGELLAVFELAELADRVVRTYSGGQRRRLEIALGMIN RPEVLFLDEPTTGLDPQNRANLWEQIRKLKEGGTTIFLTTHYLDEADALSDRLAIMDC GIIVAEGTPQELKEQISGDVIQIRLADDRTQQAKRLFDKVSFINEIRLEGEDIYLYAK NGAQVLPRIFEMLEAEGVQTQSVSIATPSLDDVFLKQTGRLLRDGKEDIA" gene 2107767..2108519 /locus_tag="Dhaf_1958" /db_xref="GeneID:7258927" CDS 2107767..2108519 /locus_tag="Dhaf_1958" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: aas:Aasi_0868 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002458434.1" /db_xref="GI:219667999" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:7258927" /translation="MKIALETGLLCRRRLLEQIRSPIWLFMGLTTPLLYLALFAPLLG GLPTVGGAGVADAFVPGLLALFALSSGTGIGWIINHELKTGIIERFRVSPVSRFSLLM GNVLKDIVTFLLPALIVIIVVSFAGFHIHAGGLAVLLVLLCLLTAVVSAASSSLGLVA KDIGTIAAVVTGLQLPVTLLAGVLLPISLGPAWLQVLAHLNPLYYVVEASRVLAGGTI WDGKVFWAFGVMIPLLGITLSWAVNVYRKAVA" gene 2108700..2110118 /locus_tag="Dhaf_1959" /db_xref="GeneID:7258928" CDS 2108700..2110118 /locus_tag="Dhaf_1959" /inference="protein motif:PFAM:PF01554" /note="PFAM: multi antimicrobial extrusion protein MatE; KEGG: cdf:CD3207 putative Na+ driven multidrug efflux pump" /codon_start=1 /transl_table=11 /product="multi antimicrobial extrusion protein MatE" /protein_id="YP_002458435.1" /db_xref="GI:219668000" /db_xref="InterPro:IPR002528" /db_xref="GeneID:7258928" /translation="MPSVKMNQGNNVLGTQPIPGMIWKFAIPAIISAMTNQVYNLIAQ VYIGWSVGDLGIAATNVAFPLAILITALSALFGMGGAAKFGLYMGQGKPEEASQTIGN ALVLMVVSGLAVSIAATVFLRPLLYAFGATEAIMTYAIPYTLITNIGIPFGILAVGAS YLIRADGSPSFSMLVVLSGVIFNLIAAPVFLFGLEMGIGGVALATTLGQMLSSAVAIY YLRVKFKSVSLKREGFQLRGAVIKGVCALGSAAFFTHLAAAAVQIVQSNALRYYGAQS IYGSEATLAAAGAVIKVMAFLMSVVIGISLGCQPIFSYNYGSKRYDRVKEAYKLAVSY ATMVSVIAFLCIQIFPRPILSIFGSGNPLFYDFAVQYMHIYLFMTFANGIQPVTSTFF SSIGKARMGFWMSLVRQVILLMPLLLILPIFWGINGVLWAGPLADGIAVVLVILFAAR EMRIMTGLQLKQVPDAGIARNS" gene 2110202..2110801 /locus_tag="Dhaf_1960" /db_xref="GeneID:7258929" CDS 2110202..2110801 /locus_tag="Dhaf_1960" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: gsu:GSU0205 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458436.1" /db_xref="GI:219668001" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258929" /translation="MMENSTKQEILKTAKDLFNQRGFNAVSLRDISGVMGISKGNLTY HFKKKEDIIEAILDEMSGQYRPPQVPQSLGEMNALFMHLQTLVKDNAFYFWHHAQLAQ VSPKIREQQSKVYQTNTKLFRQAFAVFNKDGVLLDEHFLGQYEQIIDSLLLACIYWIP FGELKQKVGQPATFQRQAWGLLYPLLTEKGKKLLQEIIG" gene 2111179..2112912 /locus_tag="Dhaf_1961" /db_xref="GeneID:7258930" CDS 2111179..2112912 /locus_tag="Dhaf_1961" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1085 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458437.1" /db_xref="GI:219668002" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258930" /translation="MNIVFEGVSKSYHDRMVLQNVSGGINQGEKVGLIGSNGIGKTTL ARILAGAETPDQGSIEYTPPNGLIIYLQQYSDFQPGASVYEELYQAVSKNANVYGPLD TMVKKSLHQFEVHESLWGLPAASLSGGEKTKLMLCKTLTRDFDLLILDEPTNHLDMDS AATLARIIKGIKQSVLILSHNRYLLDRVADRIWELTPSGLKAYKGNYSAYKTQKENEE KHTAKEYEKQQLRIRQLTEGIRQRRSWLAGAQKNSDYKNAAKTQASAIKAKEKELARL LSNKIPKPRQALLPAFDFINKFPVQNQKLSPLVIRASQLTKAYGDHTVFTDVSFTMGR GEKAALLGDNGAGKTTLLKILCGVDRDFQGQLSLDPALRIGYFSQEFEELDLGGTILE NMKTFDKSAENIRTLLACLLFRKNDVFKKVKGLSMGERCRVAMARLILSGANFLVLDE PTNYLDMGAKEKIEAVLERYAGGILLVSHDGYFVQRMATKIMRLEQGALKIYEGNYDD YLRKRKNEGAQNKGGLDLVTIRNRILQLECDLACLGGKLNQRLGEEDKKSLHEEYLRK AQEVNALRKLL" gene 2113030..2113782 /locus_tag="Dhaf_1962" /db_xref="GeneID:7258931" CDS 2113030..2113782 /locus_tag="Dhaf_1962" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: cbe:Cbei_3467 putative transcriptional regulator, MerR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002458438.1" /db_xref="GI:219668003" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7258931" /translation="MMLYTVKEVAGLAGVTVKTLHHYHKIGLLKPCEITDAGYRLYGA EELERLQQILFYRELDFSLSDIQKALEDQPGRLMCLTKQQELLIARRQRLDCLLKTIG ESIVLTKKGEIMEKSAMFQGLNADAWNTALAEQSQYLKDHYGYELPKVETEQAQEMND SAAEAKQFMDFLAEALRAGWKGNDPRLQKKIEEHLAFLKDHGHPVDAQTFAAQARFFL EDDFHRGMLESQQLGLCYYLCIAAEMYAAANQ" gene complement(2113907..2116153) /locus_tag="Dhaf_1963" /db_xref="GeneID:7258932" CDS complement(2113907..2116153) /locus_tag="Dhaf_1963" /inference="similar to AA sequence:KEGG:CKL_2529" /note="KEGG: ckl:CKL_2529 predicted helicase" /codon_start=1 /transl_table=11 /product="helicase" /protein_id="YP_002458439.1" /db_xref="GI:219668004" /db_xref="InterPro:IPR014016" /db_xref="GeneID:7258932" /translation="MEQELENRRLEQTLAIVEEQLAAARLRSEDNKAEILAAKQEMRE DTSHSISGLWSMDNFHALVELSQYANPVSAKVSEYERDANKILILEKLLDSPYFARLD FTFADEESPEQIYIGRSSLQDDKTHDITIYDWRSPIASVFYRFGTGEAFYESPGGRIS GTVSLKRQYEIHKGKLEYFFDADRQIMDEFLRKLLSQNTSPTMKTIVETIQQDQDRVI RDLEMELLMVQGAAGSGKTSVALHRVAYLMYQGLATKLSNNDIVIISPHTLFAKYIAN VLPELGESNVHSLVVDEILRKVLQRETIQTRNQFLESLLSPGRSQDSPQKRMLLKNSL AFKASSQFTEILKRFIADLPQRWNRFSDIYYDGKCLASRQLLKAQLLKDQKRTPAPLS YSLQHLEKSILKSVHKQRAHRLEKLKTFIGERTGQEFAVEERARRLSLLESTALLKQI EKFTQFDCAELYQKLFSDKPYFYRLAKGLELPDCIEEIIDFTCANLNRDVLAYDDALA LTFLHLKTKGYNGYQGIKQVVIDEAQDYDPLHFEIFQALFPQSRYTILGDIKQTIGKQ EDLSLYDRARQIFNKQHSALVTLDKSFRCTKEILEYSTRFLEPSFKLNSFSRKGDPPA VLTAPDQESLDQLIIKEINACREKGYPSIGLICKTEQDAGSLYERLKEQVPLQLIRND VEMELKGVFAIPVYLSKGLEFDAVLICDADQEHYDSEDDKNLLYIACTRALHRLNLFY TGDISPLL" gene 2116474..2117580 /locus_tag="Dhaf_1964" /db_xref="GeneID:7258933" CDS 2116474..2117580 /locus_tag="Dhaf_1964" /inference="protein motif:TFAM:TIGR03082" /note="TIGRFAM: membrane protein AbrB duplication; KEGG: amt:Amet_2937 putative ammonia monooxygenase" /codon_start=1 /transl_table=11 /product="membrane protein AbrB duplication" /protein_id="YP_002458440.1" /db_xref="GI:219668005" /db_xref="InterPro:IPR017516" /db_xref="GeneID:7258933" /translation="MLFLLDLGLMIGLAVAGYGLFRKINFPAPSIMGPMMILGIYQVL GGGLPELSLTIVNILQIVIGLSLGARINDQKLADLGKVLRPSLVIAVWTLLSTFGMTF IIHQFTPNMATALFAAAPGGISEMTVLALVYDAAVPIVSTYQFVRLVVIISVVPLIAR WLQGRQKSKDLAVDQEPAGAVLGGADLEDSQGPESKTAQEQPVSALTTWQILPLYLIG TLGGLLLLALNFPGGGVIGAMAALAITNVLFKKQYKFPNSVMQIALLGIGMSIGLEFS PEIVRTIREMLLPIVGFSLLIVLSNLAVGWYIRHLTHWDMITCLLSSAPGGLNQMLVV AEEMKADSLTISILQLVRLLIIIICIPLLAPFFV" gene 2117684..2118733 /locus_tag="Dhaf_1965" /db_xref="GeneID:7258934" CDS 2117684..2118733 /locus_tag="Dhaf_1965" /inference="protein motif:PFAM:PF02615" /note="PFAM: Malate/L-lactate dehydrogenase; KEGG: malate/L-lactate dehydrogenase; K00100" /codon_start=1 /transl_table=11 /product="Malate/L-lactate dehydrogenase" /protein_id="YP_002458441.1" /db_xref="GI:219668006" /db_xref="InterPro:IPR003767" /db_xref="GeneID:7258934" /translation="MQHSSRYEVNTLRRFMEQAFTACGVSEADGQIVVDNLLYAELRG IKSHGVSRFPVYLRRIQMGAVNPQPQISMEQRTPVLLKVDGDNGLGSVVMVHALNRGM ELAEQLGICAVGIKGSNHCGASGYYCELAAEQGLVSIVLTDGPPATPPWGGRKAYFGT NPMAFGLPRAQKPHIIVDLATSLAARGKVIRAAAQGEKIPEGWALDREGLPTTDPQAA LAGVLLPMAGAKGYALSLVVEHLAGVLVGAGFGKDVAWQYSEGNKPANVGHFIILVKA DAFMEMADYHKRTEQFVEEIKKIPLAPGTKEIKLPGERSWEQQQNTEAQGIILDADLQ AALQTIAQELTINLG" gene 2118785..2120671 /locus_tag="Dhaf_1966" /db_xref="GeneID:7258935" CDS 2118785..2120671 /locus_tag="Dhaf_1966" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tpd:Teth39_1679 sigma-54 dependent trancsriptional regulator" /codon_start=1 /transl_table=11 /product="putative sigma54 specific transcriptional regulator" /protein_id="YP_002458442.1" /db_xref="GI:219668007" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7258935" /translation="MIRIVYTMTLGHNRDIINQLIHAKESKDVSVEVLETASPQALME YDLENTIVIARGIYYLTLSKSFKHARVIELAVTGYDILRGIVECKNNYQAQKIAIILS ETIQVEKSFIEDILDVQLTVFPVKDYDHVDEVFNYVKGLGFDAVLGGFTVFRMAQKER INSVAITMGYEANYLAITEAFSVAKAIIKERRKNELFRIILENTDGAVLAYDNQGLVM AYNQGIYDILDLPANEILTGKELSVFLPQFKEAQLTEESFSANEIITINNRKVVINKR SIIIEHNNLGTVLMLQNVDALQKTEIDVRQKLNKKGLAAKYTFDAIIGQSEVVQKIIR VAQKYAVANSNVLIIGETGTGKKLFAQSIHNHSMRQNQPFVAINCAALPEQLLESELF GYVAGAFTGAAKGGKVGLFELAHKGTLFLDEIAEMPMGLQAKLLRVLQEREIRKLGDD KIIPIDVRIIAATNEDLRLKVQEGKFRQDLLYRIDVLSLSIPPLRERREDIKAIAKTF LAEFSQNRQQSIRLSQEGLMELMRYDWPGNIREMRNVCERLSVLSENKTSGVHEVKEV LNIKKEPPLNLITQTAAMQNSSHQERPNKMTQQQMAEMLGISRTTLWRRKQRQEMKAD GENL" gene 2121032..2122060 /gene="pdxA" /locus_tag="Dhaf_1967" /db_xref="GeneID:7258936" CDS 2121032..2122060 /gene="pdxA" /locus_tag="Dhaf_1967" /EC_number="1.1.1.262" /inference="protein motif:PRIAM:1.1.1.262" /note="catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="YP_002458443.1" /db_xref="GI:219668008" /db_xref="InterPro:IPR005255" /db_xref="GeneID:7258936" /translation="MISKGYKPVIGVTMGDPAGVGPEIVAKAAAQGILAKDAHPIIVG DQRLFKRGMEIAKVRVDFQVAATLEEALTMDGIVVLDTRKFDAADLVMGELREECGRD AATNIQTCVQYCRQGLMDGICFAPNNKAAMKKAGFVLHGAIDLLAGFFQFTGNRGELN VLDDVWTARVTSHIPVKDISARLTEEGILNSIHLVNDTLKRAGIAKPRIAVAALNPHG GEGGTCGREEVEVIAPTVEKAKAMGIETDGPFPADTLFIKLFNREYDAAVTMFHDQGQ IAMKLKGFDQGVTVMAGLPNPVTTCSHGSAFDIAGKGIANPGAWGNSYGLVVKMAAVD KLARVKEG" gene 2122064..2122960 /locus_tag="Dhaf_1968" /db_xref="GeneID:7258937" CDS 2122064..2122960 /locus_tag="Dhaf_1968" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cti:RALTA_B2223 putative 3-hydroxyisobutyrate dehydrogenase family protein" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_002458444.1" /db_xref="GI:219668009" /db_xref="InterPro:IPR002204" /db_xref="InterPro:IPR004455" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR006183" /db_xref="GeneID:7258937" /translation="MKLGFIGLGQMGKHMALNLLKSGEELIVYDQRPASYPEFEQRGA RTAAQIRDVAEADIIFCSLPNSEVVCQVVLGETGLKKVLRAGQIIVDTSTINYSTTLE IGKQLESVGVEFIDAPVSGMESRAKEGTLTTMCGGKQELFENVKPYLQCFADKILYMG QPGSGQLTKLINQLLFDINVAALAEILPMSVKLGLDPEKVGAVVNSGTGRSYASEFFI PMILKGSFMDGYPMKHAYKDLVSGAEISASLCIPMPVLGAATTTYQMALLKGLGDRDK GGMIGVFEDLLQVHYRQPSPEE" gene 2122999..2123811 /locus_tag="Dhaf_1969" /db_xref="GeneID:7258938" CDS 2122999..2123811 /locus_tag="Dhaf_1969" /inference="protein motif:PFAM:PF01261" /note="PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tpt:Tpet_0504 xylose isomerase domain-containing protein" /codon_start=1 /transl_table=11 /product="Xylose isomerase domain protein TIM barrel" /protein_id="YP_002458445.1" /db_xref="GI:219668010" /db_xref="InterPro:IPR012307" /db_xref="GeneID:7258938" /translation="MKLAYTVCGPETKADYLAYKGPLADMCASLHEIGYQGIELFVRD PREIDPGALGRHLEHYSLALAAIGTGPMFAEDQLRFTSTDERIRREAITRAKAAIDLA SRFGAQVNVGKLRGDIARGDEGRSEFLRDQAFQEIGGYAEEQKVWITLEPQCRFAINN LKSTQEALVWLRTKQFPNLRLMLDVFHMNIEDKSIAASFIKAKDYNIHVHLADNQRGV PGTGNLNFPDMIRVLKALGYNRYLSMEIEQSPSCYEAAAKAYTYIQQLLNDD" gene 2123840..2125510 /locus_tag="Dhaf_1970" /db_xref="GeneID:7258939" CDS 2123840..2125510 /locus_tag="Dhaf_1970" /EC_number="4.2.1.9" /inference="protein motif:PRIAM:4.2.1.9" /note="PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: tte:TTE0020 dihydroxy-acid dehydratase" /codon_start=1 /transl_table=11 /product="Dihydroxy-acid dehydratase" /protein_id="YP_002458446.1" /db_xref="GI:219668011" /db_xref="InterPro:IPR000581" /db_xref="GeneID:7258939" /translation="MKKDTPMLVNSQELFEGIKGAYPRAMFKSVGYTQEDLRKPVIGV VSSWSEIHPGSYPNKELAQFVKAGVWAAGGTPVEFHTIAVCDAIAQGMGMHYSLPSRE IVAAEIELMVGSGGFDGLVFLPSCDKSPAGMLMAAARLNLPAIFLPPGPMLSHFDEQG QQRVMSDIKEGMGAFKKQLIDEKLFAAIETDTCTTVGVCGMMGTGNTMGCLIEALGMS LPGTSTTPAVYAEKRRQAKETGQRIMAMVKEDLRPHRILTAESLANAVRFVMAIGGST NTVLHLPAIAREAGVELTLDDIDRLSEQTPCIAKYKPSSKYTLWDFYQAGGVGAVLKI MAPLLNQEALTVTGGTIEGHFCEVKNWETLRPLHDPLQPKGGIVVLKGSLAPDGAVIK VSGVKGGPKRQVGTAKTFESEEHLLEHIMTKEIQPGDVLVIRNEGPAGGPGMREMSIP AALLTGMGLGDSVAMITDGRFSGATRGFCIGHVAPEAHAGGPIAIVRDGDQIEIDIEH KSLNLLLSPGEMTKRMAELAPRQSPINKGFLGVYARNVSQADKGAVLE" gene 2125666..2126676 /locus_tag="Dhaf_1971" /db_xref="GeneID:7258940" CDS 2125666..2126676 /locus_tag="Dhaf_1971" /inference="protein motif:PFAM:PF03401" /note="PFAM: conserved hypothetical protein; KEGG: gtn:GTNG_1843 putative tricarboxylic transport TctC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458447.1" /db_xref="GI:219668012" /db_xref="InterPro:IPR005064" /db_xref="GeneID:7258940" /translation="MKKHFRMIAILATLMLLLGSLAGCGSNQAQGSNSGTGAAAADFP KKNFEFIVPMGAGGGSDVFCRTLVKTVDDNKLCPTTITIVNKPGGSGSIGWSYVAKDH KGNPYELSTVSSSFYTGPISGQSPVSYKDFTHIIAVAEDPTLLVVPANSPYQTMEQLL EAAKAKPDSISAGGSSGLSMDAVVFYALSESAGVQMKYVPFAGGGETMTAVLGGHVTF GFLGPSEAAAQIEAGKMRALAVSTEDRAGGLLADVPTLKEIGHDVVLSQLRGVVAPAD IPQEAVDYLHDMFKKAVDTPAWKEFVANNFMEEEIMGPEEFLKASEKQSEMYAKYLDK IE" sig_peptide 2125666..2125755 /locus_tag="Dhaf_1971" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.693 at residue 30" gene 2126832..2127572 /locus_tag="Dhaf_1972" /db_xref="GeneID:7258941" CDS 2126832..2127572 /locus_tag="Dhaf_1972" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF1185 iron-sulfur cluster binding protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458448.1" /db_xref="GI:219668013" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258941" /translation="MLIDQEKCIGCGICVSYCPMEAISVADKKASINQEMCVECGTCI RPRVVRCPTKAIYEPYEQIKGTPREVRRFFSDPATTHGVTGVPGRGTEEVKTNDVTGR VCRGEIGIAIELGRPCVGTTFAEVEKVTMALAKHHVDYEECNPLTHLMADRVKGTFKE EYKQENVLSAIVEFNGKLEQMAELLETIKETAKKLDTVFSLDLICCFEEDGSIPVLTE LERIGMKPRANAKVNLGMGRPYKIIREA" gene 2127585..2128256 /locus_tag="Dhaf_1973" /db_xref="GeneID:7258942" CDS 2127585..2128256 /locus_tag="Dhaf_1973" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458449.1" /db_xref="GI:219668014" /db_xref="GeneID:7258942" /translation="MTHSLHRRGAEADLKNDYVLLVTAASGINHVGSKDKLRQVLEEV WQVGPTNIGSNETGTILSGVDIEEIRANLMEVPRVRCNFASKEKIRQAIERLLELDLG MSVTVSGPTQDILEMCGDYGIKPHSINFSLDIWGKKEKLPPEEALELLTMCGHGLISK TLVAETITKVRQGKMSPEKGALKVGHPCICGIYNPERAKTILERVAPSTAEVASAVEV GGEDF" gene 2128259..2128711 /locus_tag="Dhaf_1974" /db_xref="GeneID:7258943" CDS 2128259..2128711 /locus_tag="Dhaf_1974" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: rpd:RPD_2025 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458450.1" /db_xref="GI:219668015" /db_xref="GeneID:7258943" /translation="MRMANRIASIIIFLIGLYVFIGAMKLDYMLKGIPGPGFLPRWVS LLIMVLALVLLLLSFSKNESKERHPFNAAEFKNAGIIIGGAIFVMLVTKFLGLGLAIG IMAGAIAKFTGPTSWKKVIAITIVTPIGAYVLFGMILGVPLPNGIFGF" gene 2128723..2130234 /locus_tag="Dhaf_1975" /db_xref="GeneID:7258944" CDS 2128723..2130234 /locus_tag="Dhaf_1975" /inference="protein motif:PFAM:PF01970" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: mms:mma_1293 tricarboxylate transport protein TctA" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF112 transmembrane" /protein_id="YP_002458451.1" /db_xref="GI:219668016" /db_xref="InterPro:IPR002823" /db_xref="GeneID:7258944" /translation="METLQNLAMGLSVATDPMNLLYCVIGVMFGIVIGALPGLGPSAG IAILLPLTFGTDPVAGIIMLAGIYYGAMYGGSITSILINTPGDASAVMTTLDGHPLAK QGRAGQALGMAAFASIIGGTVCVVLFMFLAPALAEFAITFGPPEYFALMVLGLTTIGG MTGKFPAKGYMSALVGLFIATIGLDLVQGIPRFTFGAYELYEGIDFIPVAMGLFGIAE LLVISEGGEKIKVSKKDLTWRKQLPNKEDWKYAGPHIARGTGIGFFIGMLPGAGATIA SFISYGIARKISKRGDKFGTGVIEGVAAPESANNAASMGAMVPLLTLGVPGSGSTAVM MGALMMFGLTPGPLLFENNPDFVWGLIGSMYIGNFLLLIAAMLCVPLFVKVLNVSSPI LNAVVMAFILIGAYSLNNSMFDVGLTILFGILGFFMKKLEFPATPMVLALVLGALLET SLRQSLIISNGNPAVFFTRPISGTILVISILAIIWPFIRKGIQVIKNSGKAAA" gene 2130271..2130990 /locus_tag="Dhaf_1976" /db_xref="GeneID:7258945" CDS 2130271..2130990 /locus_tag="Dhaf_1976" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mka:MK0460 ferredoxin" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458452.1" /db_xref="GI:219668017" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258945" /translation="MKINEELCLSCGECLPYCPMGAIEMGDTAQINQDECVECGICIR QIECPVEAFYEPAETMMWPRSLRKVFSDPTAKHENTGVRGRGTEEVKTNDVTARFKRG YYGMALEFGRPGVGTRIGDVEVFTTTLAQAGIEFEPNNPLTYLMEDVHTGVIKEEVRN EKVLSAIVEFVIPEAQLEDFVGKIRGAASQAKCMFSWGIVARYEPDGTLPVVERLAEL GIDIPRNMKVNVGLGRPKGED" gene 2130994..2131629 /locus_tag="Dhaf_1977" /db_xref="GeneID:7258946" CDS 2130994..2131629 /locus_tag="Dhaf_1977" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458453.1" /db_xref="GI:219668018" /db_xref="GeneID:7258946" /translation="MTHSLHRVGPEESFAEDFVFISRPAMGINHVGCTPKVQRTLEII FEQGPTNLGSLTTQENLTMGIDPQELMAKTEDNSPVMCAFHEREKIVNVLKKLKEEEV GLSVVVTGLVDQVEEICEEVGLEPHSVGISLGVHGATALLPEEEIMCFTTMCGHGMIA AGLVKQVKKAVAEGRMTPEKASKILAKPCYCGIFNQKRAEKLLEQQSAQQS" gene 2131708..2132598 /locus_tag="Dhaf_1978" /db_xref="GeneID:7258947" CDS 2131708..2132598 /locus_tag="Dhaf_1978" /inference="protein motif:PFAM:PF00701" /note="PFAM: dihydrodipicolinate synthetase; KEGG: NEMVEDRAFT_v1g82674; predicted protein" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthetase" /protein_id="YP_002458454.1" /db_xref="GI:219668019" /db_xref="InterPro:IPR002220" /db_xref="GeneID:7258947" /translation="MFKLHGIYAPIPTPFKDNKIALDELAGNMEFWLASQLEGIVVMG SNGEFIMLSPEEKCQLITAVCTQAKGKKPVVVGTGCESTQETIEFNHFAAGAGADAAL VLSPNYFKKAMNDTVLKKFYLEVAEASPIPIILYNMPGNSGINLSAKLVAELADHPNI IGIKDSGGNIVQIAEIIHSAPDDFAVFAGSASFLFASLALGAAGGTLALANVFPNECA RLQELVDKGKFAEAKELQLNLIEANNAVTTRWGVGGLKAALELIGLYGGEPRKPLMPL GDEDRELLAAIIKHTQEVCR" gene 2132752..2133369 /locus_tag="Dhaf_1979" /db_xref="GeneID:7258948" CDS 2132752..2133369 /locus_tag="Dhaf_1979" /inference="protein motif:PFAM:PF01557" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bha:BH1071 hypothetical protein" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (FAA) hydrolase" /protein_id="YP_002458455.1" /db_xref="GI:219668020" /db_xref="InterPro:IPR002529" /db_xref="GeneID:7258948" /translation="MIKNIYCVGRNYLQHAKELNNAVPTSPFLFVKPTHALVEGQGQT IAMPKDQGNVHYEAELVVHVGKNYEPGMKAEAVIDKIAVGIDFTLREVQDELKKKGLP WLLAKGFPNSAVLSRWLPFEGLEGTAGHDFTLEKNGQEVQRGNIKEMIFDIPTIIEFC AQHFGLAEGDIIFTGTPAGVGVAAAGDHFVLKWKEEQVGELFIGE" gene 2133359..2134372 /locus_tag="Dhaf_1980" /db_xref="GeneID:7258949" CDS 2133359..2134372 /locus_tag="Dhaf_1980" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bcz:BCZK4635 gluconate 2-dehydrogenase" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /protein_id="YP_002458456.1" /db_xref="GI:219668021" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:7258949" /translation="MVSKCGILKDGSKPKVLIARQVPQEVEEWIGRHCEYSKWEGSGD IPRSELLKQLGDVDGLLINREKIDGELLDAAPKLKIVANISVGYNNFDIGEMQARKVL GTHTPNVLDDTVADLVFGLMLSTARRLCELDRYVKAGRWNETVTPDLFGMDVHHQTLG IIGMGRIGRALAQRGKWGFDMNILYHNRSRHPEAEQRFDARYCTLEELLQRSDFVVLL APLSPQTVNLMSGREFGLMKRSAVFISASRGETVDEEALVEALREGRILGAGLDVYRK EPIPPDHPLLRFKNVVTLPHLGSATTRTRLAMARMAAENLLIGLKREIPPQCVPELKH LVL" gene 2134553..2134930 /locus_tag="Dhaf_1981" /db_xref="GeneID:7258950" CDS 2134553..2134930 /locus_tag="Dhaf_1981" /inference="protein motif:PFAM:PF02001" /note="PFAM: protein of unknown function DUF134; KEGG: amt:Amet_1463 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF134" /protein_id="YP_002458457.1" /db_xref="GI:219668022" /db_xref="InterPro:IPR002852" /db_xref="GeneID:7258950" /translation="MPRPMKWRKVCCLPESNRFGPLDLNAGDQYQVKMTVDEYETIRL IDLEGFTQEECAKKMNVARTTVQGIYIEARKKLAESLVNGKVLQIEGGEYRLCDGLGN GCGQGCYKRRRRMGCSGKEEGED" gene 2134974..2135342 /locus_tag="Dhaf_1982" /db_xref="GeneID:7258951" CDS 2134974..2135342 /locus_tag="Dhaf_1982" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: amt:Amet_1464 dinitrogenase iron-molybdenum cofactor biosynthesis protein" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002458458.1" /db_xref="GI:219668023" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7258951" /translation="MKIAIPVDEKNIGTNVCVSFGRAPYFLIYDLETKEGSFFSNSAA ASTGGAGVKAAQIIVDHKVDALLVPRCGENAAEVLRAAEIKLFKTTTLWAKDNIDAFK AGKLPALDEIHAGLHGHGGH" gene 2135344..2136219 /locus_tag="Dhaf_1983" /db_xref="GeneID:7258952" CDS 2135344..2136219 /locus_tag="Dhaf_1983" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_1465 cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458459.1" /db_xref="GI:219668024" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258952" /translation="MKIAVLSGKGGTGKTLVAVNLAAAAQRSTYIDCDVEEPNGHLFF KPEILQEEEITVKIPRVEDTLCQGCRRCVDFCQFNALAYIKEKLLVFEDVCHSCGGCI LLCPEKALTEQEKGIGKVQKGLSDQVRVYTGVLNIGEVSGVPIIKKLLNENKSDKNEP ESDQLTFIDCPPGSACSVMESIKDADYCLLVAEPTLFGVHNLNMVHELVKIFNKPCGV VLNKSLEGENPAETFCLEKNIKILSRLPFDHELGRLNSNAEIAVRKSEPYKALFSALL ETVTKEVQHETAAYS" gene 2136197..2137060 /locus_tag="Dhaf_1984" /db_xref="GeneID:7258953" CDS 2136197..2137060 /locus_tag="Dhaf_1984" /inference="protein motif:PFAM:PF01656" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: amt:Amet_1466 cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_002458460.1" /db_xref="GI:219668025" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7258953" /translation="MKQLLILSGKGGTGKTTIASALIKLADARAYGDCDVDAPNLHLI AGQSSEPAKLDYYGLPKAQIDPELCSQCDQCRQNCRFEAISAGSTYRVDPFACEGCGV CQALCPAGAITLKPAAAGELMLYIHQEKVFSTAQLKMGSGTSGKLVAEVKKQLKGAAG AAELAIIDGSPGIGCPVIASLSGVDMVLIVAEPSLSGISDMERIINTAAKFGTKAAIC INKSDTNPDHAERIEEYCQRQELPLVGKIPFDAAAVEAINKGLTIVDSECASGTAVRE VYNKVMNLITM" gene 2137094..2137942 /locus_tag="Dhaf_1985" /db_xref="GeneID:7258954" CDS 2137094..2137942 /locus_tag="Dhaf_1985" /inference="similar to AA sequence:KEGG:TDE2518" /note="KEGG: tde:TDE2518 nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="nucleotide-binding protein" /protein_id="YP_002458461.1" /db_xref="GI:219668026" /db_xref="GeneID:7258954" /translation="MSEQCNESCSSCGEDCADRKEGNPDFSAKLHEQSRVKKVIGIVS GKGGVGKSLVTSMLAVAMKKRGYHTAILDADVTGPSIPKAFGLKEKARGGESGLIPVK SEAGIDIMSINLLLAKDTDPVIWRGPIIAGIVKQFWTDAIWRDVDFMFIDMPPGTGDV PLTVFQSLPVDGIIVVTSPQELVAMIVTKAVKMAEMMKIPVLGLVENMSYFKCPDNGK EYQIFGDSHLEEIAAEHHLKILAKLPIEPQIAAACDQGTIEQVEVNWFDLAAELMEKM EGMKDA" gene 2137935..2138294 /locus_tag="Dhaf_1986" /db_xref="GeneID:7258955" CDS 2137935..2138294 /locus_tag="Dhaf_1986" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: amt:Amet_1467 dinitrogenase iron-molybdenum cofactor biosynthesis protein" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002458462.1" /db_xref="GI:219668027" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7258955" /translation="MLKIAVASEMERVAEHFGHCVNFNIFEAEENRIVKSGCLPNPGH KPGFLPNFLNDMGVNVIISGGMGAGAIDIFNEKGIEVITGAAGNTQDVVEEYLKGTLK STGSVCHDHQHHGECGE" gene 2138677..2139117 /locus_tag="Dhaf_1987" /db_xref="GeneID:7258956" CDS 2138677..2139117 /locus_tag="Dhaf_1987" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbh:CLC_0001 chromosomal replication initiation protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458463.1" /db_xref="GI:219668028" /db_xref="GeneID:7258956" /translation="MADGKLILTAEEMLLIWEKALEVLKRNLTPAAFKTWIEPVVPGA ERNSLVLFCPNTFCLDWLESRYKFIILETVQSIEPSIEEIVLREEGQVNDHKRQLVLK VDEDLYDLMKQVYEKEKNNSIGRTFEEYFTQMLQSVCQERMDAG" gene 2139235..2139426 /locus_tag="Dhaf_1988" /pseudo /db_xref="GeneID:7258957" gene complement(2139669..2141561) /locus_tag="Dhaf_1989" /db_xref="GeneID:7258958" CDS complement(2139669..2141561) /locus_tag="Dhaf_1989" /inference="protein motif:COG:COG0226" /note="KEGG: cpy:Cphy_1068 ABC-type phosphate transport system periplasmic component-like protein" /codon_start=1 /transl_table=11 /product="ABC-type phosphate transport system periplasmic component-like protein" /protein_id="YP_002458464.1" /db_xref="GI:219668029" /db_xref="GeneID:7258958" /translation="MKKFLLIIMCFVILGGCARLGKPETFLFTEENYPRIDGSTATIP LIEAVECALLGKARTDVKVNVSKTSGAYEALATNKADLLLVYDGGDETRKQVNADELF ETAPIGKDALVFLVNQDNPVENLTSEQVQKIFSGEYTNWSHLGGNDEPIRAYQRGIGS GSQALMDKLVMRGLPMAEPAKVRVIESMGGLIDAVANFVGGPTGIGYNVFYYVTEMRK NNYIKLLSVDGVEPTYESIQSGAYPFVSEFYSVIRKSEPADSPARALHEWMLSDEAQN LMASEKYVALHANPKANTPHVDGNYAMYPQGEEPVYFPGTNPYALTPSKAYGKLYFYL GAIHSESSSSPQFYGLCTADGKIVTEPIYTVATLLTDSKGNTAYLCFRSDLARKTLSN PAILFATDGSWVKDYDDAQFCYGFNGAADSVINADFIAVKKDSQWGAVNMNGETVLPF DRSTPDGIYGQPDFRNSGPELMLGITADRYLASGKLYDAKGRLIADDIKGLPMAAAGN YFVTTDFSAQSAPVVIYTYTLDGKMLAKLESSSELVQWASPCGDYVLARLEDRIKVYD RQLQELYELPLRLDETEHRYAYMRQGAGVLYDSNLTTKFHHTYLPDGTKLVTWYDPDM GENFAQ" sig_peptide complement(2139669..2139734) /locus_tag="Dhaf_1989" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.965) with cleavage site probability 0.811 at residue 22" gene 2141916..2142296 /locus_tag="Dhaf_1990" /db_xref="GeneID:7258959" CDS 2141916..2142296 /locus_tag="Dhaf_1990" /inference="protein motif:PFAM:PF07009" /note="PFAM: protein of unknown function DUF1312; KEGG: ckl:CKL_2518 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1312" /protein_id="YP_002458465.1" /db_xref="GI:219668030" /db_xref="InterPro:IPR010739" /db_xref="GeneID:7258959" /translation="MKKVEKLLIIGIVLISSILLGTMTLAKTAQANASIVIVIDNEVK QRIPLVVEEKMQTYEFKFGEQTGYLEVKNGKVRMLEMPKEICPERICSETSWIARPSQ AIVCLPNKIIVTIQGLDDKNDEIL" sig_peptide 2141916..2141996 /locus_tag="Dhaf_1990" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.432 at residue 27" gene 2142527..2144302 /locus_tag="Dhaf_1991" /pseudo /db_xref="GeneID:7258960" gene 2144324..2146273 /locus_tag="Dhaf_1992" /db_xref="GeneID:7258961" CDS 2144324..2146273 /locus_tag="Dhaf_1992" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458466.1" /db_xref="GI:219668031" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7258961" /translation="MSNHEVKKGFSRRDFLKSSAVGAVGLAAMGVLTACDSSAPAGAP VSEGNGAPVAASEGERIFGMCSTGDWLGKAPQIEATAIKEVIEKDVVVVGGGHSGLLA ALGAVDEGASVAVIETQPWSSFVDLKGDGTNRSGWYGEDIGHVNSKWLIGRGFGPYNT GEIAYEFVKRTMGRCDPDLIKKYVQNSGPMLDRMMEIYASMEDRRIQEDSAVVVKKEL HGKDDVTVDYSDMTQYPLSVVHHQHDEDQVYPMQVGDYKTWPCNIQFYGHQGNNIEYF NKYICYYAQEHGATWYFEHTGVVLVQDAGGHVTGVIAEDLNSPGTYKQFNARQGVVMA AGDFKGNPEMCWALLNEYMEWAERSGQTVADWQYTSTRSGTGHKMMCWAGGIMETTPR GCMGKKSGPSGPWGAGPFLQLNKKGRRFHNEAGTATASGIMFRQPQGLASFVTDKKVF QTLFKGGLDHGAPNFGWKEMADAMLEGFNSIEVGNPEGTQISGVAVAESLAYMKGTVY AANTLDELADFLGYTGDAKKTFLAEVAHYNELCRSAEGDIDYGKQKNLMIPVDEAPFY GGKSELNSKPSLGLVTLAGVVADEEFRVARAGNKEDPIKGLYTCGNCLGNRYGLEYVT PMAGNSLGMAMTHGWLAGKNAAQGV" sig_peptide 2144324..2144428 /locus_tag="Dhaf_1992" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.967 at residue 35" gene 2146385..2147491 /locus_tag="Dhaf_1993" /db_xref="GeneID:7258962" CDS 2146385..2147491 /locus_tag="Dhaf_1993" /inference="protein motif:PFAM:PF06969" /note="PFAM: HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aoe:Clos_1230 putative oxygen-independent coproporphyrinogen III oxidase" /codon_start=1 /transl_table=11 /product="HemN domain protein" /protein_id="YP_002458467.1" /db_xref="GI:219668032" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR010723" /db_xref="GeneID:7258962" /translation="MSSVTVFVNIPFCIRRRRGESSHIRPAGKETRNAYLEALEREID HAGELLAGKTVQSIYVGGGAATVLSPDKLARLLLRFKRAYQMAEYLELTIAAAPETLV SPCLSGLNMCNFNRISVEALCASDKMLDYLGTSYRLADLEDGLTMLGMFKYRNVNADV MYGIPGQTKAALRNSLVTCLALPALSHITLKRFELPEQEGVSAEECRDQYRYSLEYLK GKGFCQYAAGHFAKKGYECRHFYYTCQGMDHIGFGVGAKSYVDGYGITNTTDLAKYLK WAGQYEEITENVLYLDEKARQKRFAALRLQLAEGFSEEEFAARFGEGAGAAMGPSLQL LLKQSFISCLDGRYVPTEEGLFHIDEIQKVIFAN" gene 2147528..2148238 /locus_tag="Dhaf_1994" /db_xref="GeneID:7258963" CDS 2147528..2148238 /locus_tag="Dhaf_1994" /inference="protein motif:PFAM:PF04397" /note="PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: bad:BAD_1594 two-component response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LytTR family" /protein_id="YP_002458468.1" /db_xref="GI:219668033" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR007492" /db_xref="GeneID:7258963" /translation="MIHIAIVEDENKDRELLKEYLDRFQAEKGEPLFVHVYPDGEEFL ESFSSGKFDILLLDIHMQYMNGMATAQEIRKSDENVLIIFITNLVQYAVQGYSVRAFD FIVKPVEYSVFAQKLYRATQRLNRTIHSCVRFKVLDQIVNLQLSGILYFEIVARKLFI YTDTEIYRCNDTLHSIEEKLNDGHFFRCHAGYLVNVAYVRSVGKDYAMVGSARIPVSK HRRKAFLDAIGNYLGSKI" gene 2148240..2149606 /locus_tag="Dhaf_1995" /pseudo /db_xref="GeneID:7258964" gene 2149631..2150344 /locus_tag="Dhaf_1996" /db_xref="GeneID:7258965" CDS 2149631..2150344 /locus_tag="Dhaf_1996" /inference="protein motif:PFAM:PF02683" /note="PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: gur:Gura_0434 cytochrome c biogenesis protein, transmembrane region" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein transmembrane region" /protein_id="YP_002458469.1" /db_xref="GI:219668034" /db_xref="InterPro:IPR003834" /db_xref="GeneID:7258965" /translation="MDSLAHSLMLGMENGSWWLMGSMFMGGIVLSINPCMGAMIPLVI GGARQEGYSRVIQFILGFTLTLMLIGALAAQVGILFRLPGMYWAIFLGVLYLVAGAIL LGFRFPVKVSGFYVTRKNGPLRHIYQKGLSPWVLGSFFALAPSPCTTPVILMMSGTAM ASGHMIYSSLALGAFGLGHSLLLAMAFVPGVRRLFKMNRWTLQLRPVIGILLILLSGY ILVTQPGFEQAMSGHQHQH" gene 2150575..2151165 /locus_tag="Dhaf_1997" /db_xref="GeneID:7258966" CDS 2150575..2151165 /locus_tag="Dhaf_1997" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mta:Moth_1828 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458470.1" /db_xref="GI:219668035" /db_xref="GeneID:7258966" /translation="MKKKLMVGVLSAVLLAAGATTVLGADGVDSAKLAEIKSLTQQMF GIQQQIVDKEVEAGLLTQEQADKLKESISQRKQHSEEALDKGQVPGLGLGLERHHDTM MFKAGEPLTEEQIAEWLEKAQARLQDQEEAMKSSGKMTDEQIAEWLTKAQARLEEQKE AMKNGTFTPGDMGFGKGMHDRKLFDLPSKDTQSIDS" sig_peptide 2150575..2150649 /locus_tag="Dhaf_1997" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.960 at residue 25" gene 2151322..2152098 /locus_tag="Dhaf_1998" /db_xref="GeneID:7258967" CDS 2151322..2152098 /locus_tag="Dhaf_1998" /inference="protein motif:SMART:SM00342" /note="SMART: helix-turn-helix- domain containing protein AraC type; KEGG: amt:Amet_3923 helix-turn-helix domain-containing protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix- domain containing protein AraC type" /protein_id="YP_002458471.1" /db_xref="GI:219668036" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7258967" /translation="MNYIIKYGRNVGAISDRVEADSHKHWLLQLFLSIEKELDIKVKG QLIPCHALLVNMDTEHAFNAGGDIHFTMLIDPTTELGRATRRLLKEQSFYVLPQADIA VMQQAFRKALARKEHSSLLSFVQSLAAYFTSDHRVADKGADRGAFDERIIRVLELLAC CVDDDASHQLKYFSQETYLSESRLAHLFKDETGIPLKSYLVLHKLQRAYESIFAGETI TTAALRAGFDSPSHLAYTNKMMTGMSATNIIKDSEFLKVF" gene 2152146..2152850 /locus_tag="Dhaf_1999" /db_xref="GeneID:7258968" CDS 2152146..2152850 /locus_tag="Dhaf_1999" /inference="protein motif:PFAM:PF01841" /note="PFAM: transglutaminase domain protein; KEGG: amt:Amet_3922 hypothetical protein" /codon_start=1 /transl_table=11 /product="transglutaminase domain protein" /protein_id="YP_002458472.1" /db_xref="GI:219668037" /db_xref="InterPro:IPR002931" /db_xref="GeneID:7258968" /translation="MNQYLQETNMLDFRHSSIQSLIEEKQWANEECFHKIRKIYDFVR DDIPFGYNRDDTIPASEVLKDGYGQCNTKGTLLMALLRGVGVPCRIHGFTIDKQLQKG AMTGLIYSLAPRSIVHSWVEIQYKGQWYNLEGFILDKDYLQKLQEKFSAHEGSFCGYG AATDNLQNPQIDWNVNDTYIQKEGINQDFGVFDSPDEFLAVHQQQLSPLRKWAYQNVG RKLMNRNVEKIRSHSG" gene 2153042..2153623 /locus_tag="Dhaf_2000" /db_xref="GeneID:7258969" CDS 2153042..2153623 /locus_tag="Dhaf_2000" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cdf:CD0579 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458473.1" /db_xref="GI:219668038" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258969" /translation="MPRFSDTEKEMIKEKLLREGERLFVAHGVKKVTVDDLVQAAGIA KGSFYAFYTNKEHLYMDIIEQCQMKLWQELDDFLADHKDLRPQELTKRSFGRMLEGVK EYPILVKTDSAVMSYLQRKLPQDVLDAHGFEDSKALVKLQEYGVRFAYELPVVAKALQ ALYVAIAYLQQEEADHAVVVNLLLDSLIEQIVR" gene 2153627..2154487 /locus_tag="Dhaf_2001" /db_xref="GeneID:7258970" CDS 2153627..2154487 /locus_tag="Dhaf_2001" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rci:RCIX1069 ABC-type transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458474.1" /db_xref="GI:219668039" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7258970" /translation="MMIKVEGAFYKYPGAPRDVIQDISFTVRKGEIFGFLGPSGAGKS TLQKILTGVLRDYQGRVQVLGTEMKHRKSSFYERIGVDFEFPNFYGKFTALENLQYFA SLYHQKTLDPLTLLEQVGLQHDAHKRVASYSKGMKMRLGFVRCLLHNPQLLFLDEPTS GLDPANARILKDMMLEQKAGGKTIILTTHNMHDAGELCDRVAFIVDGKIRALNTPQAF QVDRSGSAEVNYSYRRDGRTVDRRSTLTQLGQDDEFVKALQNGSLLRIHSKERTLEEV FIALTGRQLQ" gene 2154484..2155188 /locus_tag="Dhaf_2002" /db_xref="GeneID:7258971" CDS 2154484..2155188 /locus_tag="Dhaf_2002" /inference="similar to AA sequence:KEGG:Amet_1482" /note="KEGG: amt:Amet_1482 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002458475.1" /db_xref="GI:219668040" /db_xref="GeneID:7258971" /translation="MRLFMATVHDIRYQAKYGFYFLYAFITVLYCAILYFLPDQHKAI GASLILLTDPATLGFFFVGGIWLLEKDEGIHRFYGISPLKPIEYILAKGLSLAMISTL SAFFIVRFSHPGSADYPLLLSSIFVGSCIFTLLGLAMATYANSVNSYMVKGVPVGMIL ILPPLLVAFQISHPVLEIMPGTILLRLIDGSIKGQLEPGSIVFLFGLMIWLGISIWIA LLRVPSALQGEGGGKL" gene 2155185..2155892 /locus_tag="Dhaf_2003" /db_xref="GeneID:7258972" CDS 2155185..2155892 /locus_tag="Dhaf_2003" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cdf:CD1755 putative ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458476.1" /db_xref="GI:219668041" /db_xref="GeneID:7258972" /translation="MKQTLRLFQIGLRQITYDGMLLVLLAAPFLFGLLVKIGIPKADA WLFQQGALSIKPWYSLADGMIIILTPMLLAMVSAFLLLEERDEGTGAYYQITPLEGYA YLAARIGLPMVWSFLCLIVVTMLCGIAHLTFLQILAAGLLSTLTGAALAMMVVSLAGN RVEGLAISKLTSLNLLGLLMVWFVPRPYQYLGAFLPGYWVGKIVEQGADWFSFGAGFL ICCLWITAFTRRFLRKI" gene 2156051..2157199 /locus_tag="Dhaf_2004" /db_xref="GeneID:7258973" CDS 2156051..2157199 /locus_tag="Dhaf_2004" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpy:Cphy_0959 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458477.1" /db_xref="GI:219668042" /db_xref="InterPro:IPR000297" /db_xref="GeneID:7258973" /translation="MKQQISLDDLNRAEVNDQPGRTAFIKEWGDFGFDFGQEGTSKFY IVCAVIVANSAIPQLEKSLEKIGFTEEEQLRVKVLNELLPLDFNLIFLIADKGRFFRD VPVPNFKGVFVKHLYDQLYKNLYHAYPKLQIAEEPTGRSEFQAGFKDYVGRERPVQNL FDQYDFDFVAGRHSGPAQLAEWLGGTVSKQLHGENTGDYLNILYWKILNIEKIPGDNA VNLNPAADNSRFNQEIANLAFRKARGYIREHERDAELEKRLQVSFLKYLIFEAQYGNP YKFITSKQILSVLSKYADTRLSKDFLYRKIVAPLRDARVVLASSPQGYKLPISVEDIS AYLQQTNSIIAPMLHRMGLCREVILQQTGGKLDVLAEDEFLKYQKYFD" gene 2157234..2158934 /locus_tag="Dhaf_2005" /db_xref="GeneID:7258974" CDS 2157234..2158934 /locus_tag="Dhaf_2005" /inference="protein motif:PFAM:PF04434" /note="PFAM: zinc finger SWIM domain protein; KEGG: tte:TTE1567 hypothetical protein" /codon_start=1 /transl_table=11 /product="zinc finger SWIM domain protein" /protein_id="YP_002458478.1" /db_xref="GI:219668043" /db_xref="InterPro:IPR007527" /db_xref="GeneID:7258974" /translation="MNLDSFEHEMEKKILERGYQYYQDGHIRSLKETEAGLYQAEVEG NARYRIYVELAEDNTILASECDCPYDLGEFCKHEAAVYFALRERKSEVQEQQVIPMPK SRQGPQKEAIKKMLEKASQEALADFLLMLAEGSEELKTRIELAFGDENDQQEVKRCRK LIQSYIDKNSDRHGFIGYDQMWEALKGTELVLEKSRDVLGKGKAVQAVRLALLVIGEA VDMTQYGDDSDGGIGVAVGDGFEVLDEVREELEDLTETERKEIFALIMEEADNRRYRG WIDCQIDLLRRSAGFIVTPAERERMENCLKKLITASQKDSWTSEYLNENILLIQYELH CRFEGEAQATAFLNRHLNYSKFREIAIHQAMGEGDEARIIQLCLEGEEKDKGYSGLLN RWREHRYQSYIRTGQLDNRRSLALEFVEEGSFQHYQDLKSTYSTDEWSDVYPKLIERL AGKKKDHRGIYAQILVEEQEWERLMQYVFANPRSIDSYYKYLMAEYREEVCRIFQHNI EQAAALANTRSHYRGVCATIRTLQKAGGKKEARDVVQSLLLKYPRRPAFRDELNKLKL" gene 2159047..2159229 /locus_tag="Dhaf_2006" /db_xref="GeneID:7258975" CDS 2159047..2159229 /locus_tag="Dhaf_2006" /inference="similar to AA sequence:KEGG:CPR_0880" /note="KEGG: cpr:CPR_0880 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458479.1" /db_xref="GI:219668044" /db_xref="GeneID:7258975" /translation="MDNYKAVLDFFAKAEQPARTGDVAEATGIDKKEVEKVMNTLKKE EKIVSPKRCFWEINKA" gene 2159419..2160138 /locus_tag="Dhaf_2007" /db_xref="GeneID:7258976" CDS 2159419..2160138 /locus_tag="Dhaf_2007" /inference="protein motif:PFAM:PF06541" /note="PFAM: protein of unknown function DUF1113; KEGG: ckl:CKL_3478 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1113" /protein_id="YP_002458480.1" /db_xref="GI:219668045" /db_xref="InterPro:IPR010540" /db_xref="GeneID:7258976" /translation="MNYLDIFLLFAWYSCLGWIMETIYASITHKKFVNRGFLNGFFCP IYGLGAVLIIVSSTWVGTIFSGALAAGTFSVVAAVILVTALEYITGFMLEKVFHCKWW DYSEDFANLHGYICLKYSLLWGVLALVLLEIVHPGIAGLLLFIPSEIKIALSALLFVY FLVDTIKSVADTLDLRNAILNHSSFSLLKYYEKILRYRRIFQAFPRLLILNADIINRD VRSILNEKVDKLKTELKSKFQ" gene 2160089..2160661 /locus_tag="Dhaf_2008" /db_xref="GeneID:7258977" CDS 2160089..2160661 /locus_tag="Dhaf_2008" /inference="similar to AA sequence:KEGG:CAC1667" /note="KEGG: cac:CAC1667 HD family hydrolase" /codon_start=1 /transl_table=11 /product="HD family hydrolase" /protein_id="YP_002458481.1" /db_xref="GI:219668046" /db_xref="GeneID:7258977" /translation="MKKWISSRLSSRANFNSLAEYRECLQGLLDHESVLMMEDFIQHG RTTCLEHSLYVSYTGYKVCRLLGLDWRSAARGGMLHDFFLYDWHTTKPDNGLHGFTHS LTALENAHELFELNDREKDIILKHMWPLTVTPPKYKEALIIALIDKYWALLETLRLGK EIKNGSLKKKLYNQWEVPEKLTHVREELTE" gene 2160830..2161603 /locus_tag="Dhaf_2009" /db_xref="GeneID:7258978" CDS 2160830..2161603 /locus_tag="Dhaf_2009" /inference="protein motif:TFAM:TIGR01764" /note="TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; protein of unknown function DUF820; KEGG: swo:Swol_2037 hypothetical protein" /codon_start=1 /transl_table=11 /product="DNA binding domain protein, excisionase family" /protein_id="YP_002458482.1" /db_xref="GI:219668047" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR008538" /db_xref="InterPro:IPR010093" /db_xref="GeneID:7258978" /translation="MGSLLTAQEVAEMLNLSVDTVWRYTRQKKIPVMELGKKQYRYEK EAVLAALTAGKIPAEDLPVKEESFGYAKQGEYTYEDYVRIPEEPGYRFEVLEGMLIKE PSPTTHHQRVVFALSRQLADFFEGFDPEGELFIAPLDVTLTSRNVVQPDILFISGSRR SIMRPERIDGPCDLVVEVMSPSNRRKDRLRKLEIYRRAGVPHYWLVDPEENILEAFVL RDERYVLIVVSGPGDRFAHPDFPGLDLDLAKVFYRPEYE" gene 2161736..2162317 /locus_tag="Dhaf_2010" /db_xref="GeneID:7258979" CDS 2161736..2162317 /locus_tag="Dhaf_2010" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cbb:CLD_0061 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458483.1" /db_xref="GI:219668048" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7258979" /translation="MYKKKEIGQSEKILNAAVLCISTKGYASVSLRDIADEAGVVLSQ VNYYYKNKEGLFIEVIRALAQRYLQELENKLSQGKSEEEKTACLIEFFQDTLLKNPGL FKLLFDVTSMALWSDTFREPLRQLFDDSTALIEKYIIKDIAPRQNSDGYSPSVLSRIT LGALFGTSIHIMLAEEQKDAVASLSAIKVLFSN" gene 2162831..2163235 /locus_tag="Dhaf_2011" /db_xref="GeneID:7258980" CDS 2162831..2163235 /locus_tag="Dhaf_2011" /inference="protein motif:PFAM:PF01797" /note="PFAM: transposase IS200-family protein; KEGG: esi:Exig_1639 transposase IS200-family protein" /codon_start=1 /transl_table=11 /product="transposase IS200-family protein" /protein_id="YP_002458484.1" /db_xref="GI:219668049" /db_xref="InterPro:IPR002686" /db_xref="GeneID:7258980" /translation="MAKLDNNNHSVFLLTYHLVMVVKYRRKVIDDTIALRIREIGESI GKNYHITFLEYNHDRDHIHIVFKAHPNSELSKYINAYKSASSRLIKKEFSHLRHQLWK EYFWSQSYCMVTTGGAPLDILKKYIESQGEKR" gene 2163240..2164328 /locus_tag="Dhaf_2012" /db_xref="GeneID:7258981" CDS 2163240..2164328 /locus_tag="Dhaf_2012" /EC_number="2.1.1.37" /inference="protein motif:TFAM:TIGR01766" /note="KEGG: mma:MM_3038 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB" /codon_start=1 /transl_table=11 /product="transposase, IS605 OrfB family" /protein_id="YP_002458485.1" /db_xref="GI:219668050" /db_xref="InterPro:IPR001959" /db_xref="InterPro:IPR010095" /db_xref="GeneID:7258981" /translation="MQMVYRYEVYPSREQEQKLFHTLKLCRKLYNHALNERQVTYKET GHGLTYNQQQNALPAFVKAHPEYSQVHSQVLQDVLRRLDSAYQHFFAKEAGYPRFKNR DHYSSLTYPQVDNVKRTFGRAGYIYLSKLGFVKMETHRKFPVEAIKRVNIKYHGGKWF ANLTAEIPDVAPVENPSQAVGIDVGLNHFAVLSDEKVIDNPKYYRKMEKKLAKAQRRL SRKRKGSHNRGKAKVKVAKIHAKIANQRKDFLHQASVRVVRSYDLIVMEDLKVHNMVR NRRLAKSIHDAGWGQFRNYIRYKCERQGKQFILVDPKGTSQSCLCGESVPKDLSVRVH ECPSCGLVMDRDLVSSKLILARGLSKIA" gene 2164663..2165418 /locus_tag="Dhaf_2013" /db_xref="GeneID:7258982" CDS 2164663..2165418 /locus_tag="Dhaf_2013" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cth:Cthe_2663 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458486.1" /db_xref="GI:219668051" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7258982" /translation="MENLSQEIELLSDRFKGVSDDTKDIKQLNSVGLQSVNLLQEKSL ETNAALAQIYQTIESLTNSTKNIEQLLESVEGIAEQTNLLALNAAIEAARAGESGRGF AVVAEEIRKLAEQSRVSTVEIGSLVHTIQNQSTLTIVSMQRVQAVSQEQNEAALHTND AFQNITEATESISSKIAMIQQGMTSIQNHRHEVLKVIENISAVTKEAAASSEEIAAAA GGQVSILEEMNEVTRKLDEITQELDVKLKKYKL" gene 2165724..2167457 /locus_tag="Dhaf_2014" /db_xref="GeneID:7258983" CDS 2165724..2167457 /locus_tag="Dhaf_2014" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_1784 predicted transport protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458487.1" /db_xref="GI:219668052" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258983" /translation="MVKLVKYLSSYYGYILGAVALLFLQANCDLALPDYMSDIVNTGV MTGNTNYILKTGATMLLITLLGTAASVMVGYFAARTAAGVARDLRSGVFKKVEQFTHA EFDHFSTASLITRTTNDITQLQTVLVMMIRLVFYAPILGVGGVIKAISSSSSMSWIIG IAVLCLIGVVVILFIVVIPKFKLIQSLIDRLNLVARENIEGMLVIRAFNTQKFEGARF DKANRDLLETNLFVNRAMALMMPVMMLIMNLVTVIIVWVGAKHVSAFQMGIGDMMAYM QYAMQIIMAFLMMSMMFIMFPRAAVAADRIAEVLEKEESIADPEEPASFREEFQPTIE FRNVNFAYPGGEDAVLHNINFLAPAGQTTAIIGSTGSGKSTLLNLLMRFYDVTAGEIL VDGQDIRTVTRRSLREKIGYIPQKSTLFSGSIRSNLSYGDKKATQETLAKAAEIAQAT EFIAAKEEGYDSVIAQGGTNVSGGQRQRLSIARALVKNAPIYLFDDSFSALDLKTDRN LRGALQRETGTSTILLVAQRVSTIMNAEQIIVLDNGRIVGKGTHNELLQTCEVYQEIA YSQLSEEELAR" gene 2167454..2169349 /locus_tag="Dhaf_2015" /db_xref="GeneID:7258984" CDS 2167454..2169349 /locus_tag="Dhaf_2015" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bwe:BcerKBAB4_2433 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458488.1" /db_xref="GI:219668053" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7258984" /translation="MSAAEKQTGFGPGRQGPGGGRGFFGGPPGGPGGPGGGEKARDFN KTLRTLTGYLTPHKTTISIVVFFALFSTVFTIVGPKLLGKVTTKLAEGLFAWYNQTGL LTDFNYIGKIIGALVVLYVISSICSYVQGYLMSGVAMDVTYRLRKEIAEKMSRVPLNY YDTRSHGEVLSRITNDVDLINQTLNQSLNQIITSAASIVGILIMMLSISWMMTVAALL VIPLSLGIVGVVIKRSQRFFREQQHSLGELNGHIEEMYGGHTIVQAFNGEAESVAFFE RVNDQLYHSAWKSQFVTSIMMPVMSFVGNLGYVVVSILGGYLAVKRVVDIGDIQAFIQ YMRSFTQPIAQLSSISNTLQSTAAAAERVFEFLAEGEETPETAHPVTLDQFSGHVRFE HVSFGYSKDKQIIHDFSADIKAGQRVAIVGPTGAGKTTIMKLLMRFYEIDSGRILISD HDIYDFSRHDLRSLFGMVLQDTWLYNASIKENIRYGTFAATDEEVMEAAKAAHCDEFI RALPGGYDMVLNEESSNISQGQKQLFTIARAILADPKILILDEATSSVDTRTEILIQK AMENLMRNRTSFVIAHRLSTIRDADMILVLKDGDIVEQGNHEELLAQNGFYADLYQSQ FEEAEAV" gene 2169384..2170937 /locus_tag="Dhaf_2016" /db_xref="GeneID:7258985" CDS 2169384..2170937 /locus_tag="Dhaf_2016" /inference="protein motif:PFAM:PF00529" /note="PFAM: secretion protein HlyD family protein; KEGG: mta:Moth_2323 secretion protein HlyD" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_002458489.1" /db_xref="GI:219668054" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7258985" /translation="MGVQLKSEEQQQLKEQVKGKKSRKGIVLAILTVIVLIAGCAGFY YFNENSRYFTTDNAKVTAKMYTITPNASGELLEWKVKEGDLVEKNQVLGRQAVLPYIT SPIQGTVIKNNSIQGQAVTPASQLAVIADTDHLYIGVNIEETDIARIKVGQRVDVKLD AYPGVTFPGRVQEIDRATQTYFSGASSFSTSGTYAKVTQLIPVKVVIDNQDNLPLTFG MNATVKIHIKEEPVNTPSGAQGGENTDSQQAVHYSSVLEAAEQMGIIPNVAGKVSKIN VSIGQRVEKGDVLFQLDSTDLELQVKQATANYNAAAASYNHNKASYDSQTAVTPAQIA YNEAMDNYIRIKALYDGGAVSEVELNNAQDKVEITHAQLQTAQNSAKGAVDAAAAQMA SAQAGLDIAQKKLDDCIVRAPMAGEVAAKTIEVGMMASPQAAAMTLINTQQVKVHINV TETNIAKIKVGSTAEVKVQAINAAAQGKVVNIAPASDAKTGMFQIEILLENPDSLFKA GMICDVELR" gene 2171098..2171556 /locus_tag="Dhaf_2017" /db_xref="GeneID:7258986" CDS 2171098..2171556 /locus_tag="Dhaf_2017" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: chy:CHY_0813 MarR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458490.1" /db_xref="GI:219668055" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7258986" /translation="MQESKTVRLLESIKKFRQLSLNFRGNGEIPHREIMMLKLIKHHS GEGGITISSLSAHLEISKPAVSQMINSLEDKNYVERITPKSDRRMVYVRLTELGEEAL GVAFHEMQKKLEIYLEKMGEEDMATLIALLDKLHRIMKEDLREEREEKEQ" gene 2171666..2172232 /locus_tag="Dhaf_2018" /db_xref="GeneID:7258987" CDS 2171666..2172232 /locus_tag="Dhaf_2018" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: tex:Teth514_0144 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002458491.1" /db_xref="GI:219668056" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7258987" /translation="MMNETLKVIAERYSCRDFKNEMPSDELLQAIAEAAIQAPSGMNR QAWRVIVVKNKELMQEMEAEGLAYLAGMEDQSSYNRIMERGGRLFYGAPCMIVVPIDP TQYGPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASGLRAEEFSKRLGFPEGYA FGCSVLLGHANTTKPPHVPDKDKITYVE" gene 2172486..2172803 /locus_tag="Dhaf_2019" /db_xref="GeneID:7258988" CDS 2172486..2172803 /locus_tag="Dhaf_2019" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aas:Aasi_1101 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458492.1" /db_xref="GI:219668057" /db_xref="GeneID:7258988" /translation="MDNEEFQKLVLNGFKEMNEHFQRIDQRFQGIDQRFDKIDTKLNE HDLHFVDIRSELADLKVHSSQHHEELEKVARQVQKSLRTTEKLIEIDNDYLAKRSSLK LID" gene 2172944..2173423 /locus_tag="Dhaf_2020" /db_xref="GeneID:7258989" CDS 2172944..2173423 /locus_tag="Dhaf_2020" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: abc:ACICU_00223 aminoglycoside 6'-N-acetyl transferase type Ib" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458493.1" /db_xref="GI:219668058" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7258989" /translation="MRDHIPHLRQIEDEDILLLNRWLHKSYILNWYEDPQAWLDEIRQ RNGVYNFIHHFIVMKGSQPIGFCQYYDCYEAGEDWYSVHRANETYSIDYLIGEEACLR QGYGRQIICLLIDRIRGDTQGKEIIVNPEEENLASCKALVACGFEYDQTAACYRRKL" gene 2173530..2173700 /locus_tag="Dhaf_2021" /db_xref="GeneID:7258990" CDS 2173530..2173700 /locus_tag="Dhaf_2021" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458494.1" /db_xref="GI:219668059" /db_xref="GeneID:7258990" /translation="MQHVSPAGCLTGKRLAQFVSYKGITAALMSLGRYFFLVMTNTIS VANAIAKLNNKK" gene complement(2173721..2174029) /locus_tag="Dhaf_2022" /db_xref="GeneID:7258991" CDS complement(2173721..2174029) /locus_tag="Dhaf_2022" /inference="protein motif:SMART:SM00530" /note="SMART: helix-turn-helix domain protein; KEGG: ckl:CKL_3314 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458495.1" /db_xref="GI:219668060" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7258991" /translation="MDDNFIRNRISELRIQKDVSERSMSIDLGHSPSYIHSIVSGKAL PSMTEFLYICDYFKISPKEFFDEGTSCPALIQEVIKDLSALDEKQISNIHEIIKGLKK" gene 2174170..2174394 /locus_tag="Dhaf_2023" /db_xref="GeneID:7258992" CDS 2174170..2174394 /locus_tag="Dhaf_2023" /inference="similar to AA sequence:KEGG:STH225" /note="KEGG: sth:STH225 stage 0 sporulation protein A, two-component response regualtor" /codon_start=1 /transl_table=11 /product="stage 0 sporulation protein A, two-component response regualtor" /protein_id="YP_002458496.1" /db_xref="GI:219668061" /db_xref="GeneID:7258992" /translation="MNMREIYRKVARKHGVSVKEVKRDMQAAIEFAYNRAGRSEREKT VQKSVEHANGVPTVKELIAFAVGELREQEK" gene 2174462..2175361 /locus_tag="Dhaf_2024" /db_xref="GeneID:7258993" CDS 2174462..2175361 /locus_tag="Dhaf_2024" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: nth:Nther_0700 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458497.1" /db_xref="GI:219668062" /db_xref="GeneID:7258993" /translation="MDMVEGSFLCRLLKLEGNKGEMLNYTSVGNFGGDEKMNLSKGFQ LANKYYLLLLVPIIFDLLQLGNILRNAQGFTLKLTIPSALPSITQVMNTANQGTDIFN INLPYGYSGHGFFAVLIVILYLLAGAFFKGGFLGCILAGINEQEVSVSTYIQAGKQYF GRFLAQSLLMVALLLAVALFLIAIGPLALILMIGFFILAFYLTFWDYVIVAENAGLIE AAQISLARVQSGLGKVFLFLIPIALITALLGIIANALIAASSILAVLAIALYAYFGTA VVFAIMTFYLEIEGSGAGSDFTA" gene 2175591..2175854 /locus_tag="Dhaf_2025" /db_xref="GeneID:7258994" CDS 2175591..2175854 /locus_tag="Dhaf_2025" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: swo:Swol_0393 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_002458498.1" /db_xref="GI:219668063" /db_xref="InterPro:IPR007337" /db_xref="GeneID:7258994" /translation="MAETTNLNIRIDKELKEQAEVFFNELGLNMTTAFNIFVRQSLRQ GGIPFDITLNTDGFYNPANMKMLRQSIQDANEGKLTAHDLLGD" gene 2175858..2176121 /locus_tag="Dhaf_2026" /db_xref="GeneID:7258995" CDS 2175858..2176121 /locus_tag="Dhaf_2026" /inference="protein motif:TFAM:TIGR02116" /note="TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: tde:TDE0662 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module toxin, Txe/YoeB family" /protein_id="YP_002458499.1" /db_xref="GI:219668064" /db_xref="InterPro:IPR009614" /db_xref="GeneID:7258995" /translation="MKKLWTDQAWADYLYWQSQDKKTLKRVNQLLLDIERNGYDGIGK PEQLRGDLGGWWSRRIDNTNRLVYRMTDGIIVIASCRTHYGDK" gene 2176270..2176677 /locus_tag="Dhaf_2027" /db_xref="GeneID:7258996" CDS 2176270..2176677 /locus_tag="Dhaf_2027" /inference="protein motif:PFAM:PF03681" /note="PFAM: protein of unknown function UPF0150; KEGG: csc:Csac_0081 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0150" /protein_id="YP_002458500.1" /db_xref="GI:219668065" /db_xref="InterPro:IPR005357" /db_xref="GeneID:7258996" /translation="MIMNYVFPATMERNALSGRYIVIFPDLPGLICQGETQEDAYHDA ELSLGIHLYHMEKDNKPIPKASDPADWPKRKGAEVIVLEADTLEVRQAIDRKKVPKNI MIPKWLKDLGEENKVNFAKILKEGLMAELGISE" gene 2177187..2178038 /locus_tag="Dhaf_2028" /db_xref="GeneID:7258997" CDS 2177187..2178038 /locus_tag="Dhaf_2028" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: rxy:Rxyl_0047 transcriptional regulator, MerR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002458501.1" /db_xref="GI:219668066" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7258997" /translation="MVQKQIKIGDFVKLTGSTLKTVLYYHKVGLLPEPERSPGGYRLY GAAELGRMQSIKHLKALGLDLKQVKDILKDKANSSANDQADAQTKDRTLQEVLESLRL DLLREIKSLEERLSRVEELLSEKQGSLDEAIGEAMSFQVITGILRPEQVEDYARTNPE LLAEQRKVFALLDDFAWGGEYRETLRALAEYFQEQPEHYQKALAWGVRLSNLAQMAED DPDVENLAREATDFIKSIPRLQTLLCGGPWLKEPQAGLYKEMVAGDFMPARLKHMELF QKYLQEN" gene 2178152..2178637 /locus_tag="Dhaf_2029" /db_xref="GeneID:7258998" CDS 2178152..2178637 /locus_tag="Dhaf_2029" /inference="protein motif:PFAM:PF04140" /note="PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mla:Mlab_1695 Mn2+-dependent serine/threonine protein kinase" /codon_start=1 /transl_table=11 /product="Isoprenylcysteine carboxyl methyltransferase" /protein_id="YP_002458502.1" /db_xref="GI:219668067" /db_xref="InterPro:IPR007269" /db_xref="GeneID:7258998" /translation="MAENREMTREKEATSKPPVILNLYFLGFILPGFDFRLHWSTVPV WLVLAANALVFLGYIFILRVFRENSYASTVIQVEQEQPVISSGPYALVRHPMYLGMAV IGLFSPLALGSFWAVIPALLILPSLVLRIKWEEEVLLQKLPGYQEYCSKTRFRLLPLI W" gene 2178697..2179011 /locus_tag="Dhaf_2030" /db_xref="GeneID:7258999" CDS 2178697..2179011 /locus_tag="Dhaf_2030" /inference="similar to AA sequence:KEGG:GTNG_0377" /note="KEGG: gtn:GTNG_0377 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458503.1" /db_xref="GI:219668068" /db_xref="GeneID:7258999" /translation="MFDELVEAKIQEAMKNGEFDNLPYGKPINLNYWASLPEDIRMGL MLLRNAGYVPEEVQLLKDTEELRERLVGSTDPDEKSVLTKKLREAEVKFSMMLEMRRR RR" gene 2179254..2182706 /locus_tag="Dhaf_2031" /db_xref="GeneID:7259000" CDS 2179254..2182706 /locus_tag="Dhaf_2031" /inference="protein motif:SMART:SM00382" /note="SMART: AAA ATPase; KEGG: cbe:Cbei_2045 AAA ATPase" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_002458504.1" /db_xref="GI:219668069" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259000" /translation="MSNYDFHALLEPLEFQDLVCDIVQLRDNIFLETYKEGRDSGIDG SYTDNTQKIIVQAKRCPQDFNKLYRGLQHKELPKVKKLNPDRYILGVSMDFNPEQKTK IVELFAGYITNTRDILSRKDINRLLRDPSYKHIQYAYPKLWSPNLAVLEKVLKESVHR AAYKESSEDLKDAIKASKVFAPTRIYRQALREWSQNQVIVISGEPGVGKTTMAYLLAL AYLQPDNLAGFIWANSIHDVYAMMDDQQKQVIILDDFWGSIFHDDYTRRNDENRLDKL IRRIIESKGQKRLILTTREYILQQGLQKHPALRETLAQYALICTMEEYGEDEKASILF RHLYASHLDYHYVDYLFAKSSDIVSHRNYNPRVLALFLAREPDRECSPQDYYEELCDY FDNPSAFWKAIFVDLSPEAQMVAMLLLISSTPMLLTDMARCYQKYIHDCTKQTTVKNL SETIAELEKTMLKSFYDEEEEAVMLRFSMPAVQDFLYQHLEENGEHYIPLLLQRCTFY NQLQFLLEHLSMKCSRRVADLIVEECILHYQDYGDSYRDYDGSWNWDVDTFPYEYEHL QRFFHLLRCYNPERHPALGRFLEREIKDYCLTMGSSDPEAQYTDLHNLPDIIGRCSQK GMVFSGKAVIGKYYEEASSIYHYRAMEKFRDVFPEEYGVFYETYFPRIKRNLKDTILS ELEFLEEFAMDMQLDRLIDDIPDLLKEFGLRYTKEFGRQVLDLCGREPVPLERRKAAF AKPPHGGMDQEERALEAVKEDAETWLLGPGETDLGDEQIVEMIAESGLNPELKEELKK TLNTGTPYYIYNFLQTKESVELLLAALETSGDELPERESSLYMMLLSYIGREDLELIK KLINFGTESFIIFMYRDEPVLRVNQFLAEDVYLSYLKHDPEFYDLVFENLLIRDEQWV RFLHIPLFIFCHASIMVMGCNEKELAEYYQDVWGDNSSKIKYVTKYDWGSQASISYVD MGTYHFRRYDWEGCMYRLFEELNPFHFNQTYVEPALKRYLDELGDGGDDSKVLKHLTL CRMQAEYTEKGVFRSLGCLISDELVMIEHLSIAEFWTELPSQIRRTRLKELQKGEKIC KKDNDRWRILLYEIKDVKLLKELGVYDDTLRFINEVEGTYLRFLDGNYAPIKSWDHLI NGHT" repeat_region 2182906..2184414 /note="ISDha5" gene 2183061..2184413 /locus_tag="Dhaf_2032" /db_xref="GeneID:7259001" CDS 2183061..2184413 /locus_tag="Dhaf_2032" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: pth:PTH_2669 hypothetical protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002458505.1" /db_xref="GI:219668070" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7259001" /translation="MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVV FQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVGRF EKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSF APLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSPKPDTVVQMLERALKAGFS ADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPK AEILGSVRVHTPSGLALKVVFVQNRNNRREWLAILTTDLSLETTEVVRIYGMRWSIET FFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFA DEVMDLDLKTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES" gene 2184808..2186307 /locus_tag="Dhaf_2033" /db_xref="GeneID:7259002" CDS 2184808..2186307 /locus_tag="Dhaf_2033" /inference="protein motif:PFAM:PF09660" /note="PFAM: conserved hypothetical protein; KEGG: gka:GK0317 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458506.1" /db_xref="GI:219668071" /db_xref="InterPro:IPR013493" /db_xref="GeneID:7259002" /translation="MYSLYDKIEETKYLSEGKAGIYRPICHLLFQKTAQEFQGSMYTV GEILADLKRRPEFEDRFMDLTDRDLDEALKSLEKWGNVIGHQDTSKAKRIEELKNRRS LYSITDITIELERMIEGLQNSLQSIRGIEFERHIPDRMIEELVKLKTWHEGQTYDLRI VWKELMDRFKSLQTESSNFFAQISRASSNEELMRTASFLAYKEKFVQMLRNFVLVIME KQEKVKHYFLDIPDDAIQRIVDHIVTKEAGSDLTGDFSAEESRAARLLEWQGLKGWFV EINGKKPGVRFLIDQAKNTIVRVVKIAEQVTDRYNHFKSRKNDCLQLARLFASARTIE ECHRLSAYVFGVQQTFHLYTVPKRSDDYHDTVWEYDPHEITISKNRPGRREGKIKQAL DENPLKEYELLKQHQELQTIIRRYFDELSADRKIVFEELPILHPIIRNTLLDLIGQAN ASSKKTARTDNGIKFCLKERSDRWIKVRFKDGTLMMKDLELERIGGGNT" gene 2186304..2187458 /locus_tag="Dhaf_2034" /db_xref="GeneID:7259003" CDS 2186304..2187458 /locus_tag="Dhaf_2034" /inference="protein motif:PFAM:PF09661" /note="PFAM: conserved hypothetical protein; KEGG: gka:GK0318 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458507.1" /db_xref="GI:219668072" /db_xref="InterPro:IPR013494" /db_xref="GeneID:7259003" /translation="MNEVIPFQDCVRALFDHYWIRQEDDPEMFYAIKKQERDLEAYFR TQFRYHLIVEATFAKLEKIPFKAQPSMGIFEFEREKSYIFFACLLAYFEDKGEDQQFL LQDACEAIRNYAPEEAGPIRWEDRSTRKAFVEALKFCRDQHIIEEIDQQIEGFRDQME HEVLLQTTPLFRRILTLYFSDLSQIQTVQEFEDAVKREIGEATTPKQRIMRTWFLESA LRHEDLTPEERDALNCGFESWQAEIEGRFDFMHVERYKSMSMIVHSEYQYGEYYPDAR NNQTMRTAIQWATEVLNQVRRGEVIPDLYGRIRMHEREAFQVFLTVKEKFQYGWNKEF TQIKSPEAAWKMVLEALKQFSIVKSIGDKQLYCFDIAGRIAGQYQEEGNQ" gene 2187455..2191567 /locus_tag="Dhaf_2035" /db_xref="GeneID:7259004" CDS 2187455..2191567 /locus_tag="Dhaf_2035" /inference="similar to AA sequence:KEGG:Teth514_2246" /note="KEGG: tex:Teth514_2246 chromosome segregation ATPase-like protein" /codon_start=1 /transl_table=11 /product="chromosome segregation ATPase-like protein" /protein_id="YP_002458508.1" /db_xref="GI:219668073" /db_xref="InterPro:IPR013496" /db_xref="GeneID:7259004" /translation="MTVHRYQPNRLGLFNFWYHTDSVLEFVDGKLFVRGANGSGKSVT TTMAVPILLDGDKSPSRLDPFGGKSRLMVDLLLGEKNISQKEEATGYLYFEFKKGDSY LTFGIGMYGNRKEQRSPDYWYFMINDGRRIGYDFLLYDEENIRGEIRKFPLTKAQLEE KIGWGGEFTTSQASYTEMVNEHLFGFNSVKTFKELIHILIQLRSPKLSRDTKPTDVSN LLSDSLPELTDDELLPMILTIGTIDAHQEKLEELEKSLSYLRALESAYQTYNEYRLYE IAKENTKIQKQIHESNHLLGIDHRQLEQYETEFAELPEQLAILETEKQTLDMEERQLR GHEIFGLRQQQTQLEEDVTKFDKSFKSLEEQYNNKRIKIDRLTHDRTANDYEKEKTKN AIDEIAEELGDLAKRTLFSSHDQYLLHLEQNPNAELTIFHKNWEEDLLNHRKELSLIR QLAQEVETCRLREKDAEEAVDRVEQQLEIVKKRRTELQKTAEYIYGDLGESMETWQTQ VQVFVLGQNAKQQLIGLFESFLYEEIEDASREIEIWCSDQKQIYENSIIKEMEGQRFV IAQEKSRQTIWKEQIEDIQSQPEIEPVYSKDEQARRNSLREQNVMFRNFYEAVEFRPE LDAKARENLEAAISRAGLLTALLVSEEDEERILELPILRTQQIKTHNLMQYLVAVPDE TISRAKIERLLQGISISKLDESYILDTGEFQNGFIYGNAPFQEEQFIGKAAREATRAK RILSLQDEIQSSQNRIEEADDQISFLENQKRRLNTEFSTFPSLEPIREMERQRKGLDT EEKLANSQVEQQKVNFQALKQSNQPIINEFLLKSAPYHRIEGTSAAYQNILDELNEYR NQLKNFFYFMLQRKTLEDKVDDASNRIDDLENDLIDLKEKQMEAQRDLNSSKAKRDMI LNLIMNQSDEQNILARIDKIALMKEKNEGALREKIQRQSDLRSDISKLKPQIEAQGLD ILNLEELKQAWESLFQEEKSFGFIDAHWTAPLAVNNLELTYKESKISEIQERLNRTSY DAERELIEQNMKQTQHTLKIRKMGKGREWEQLQHWVDRRFITFTPSYIEMKPVQLLRE LQETRDETALAIQEKERQLYEKVLIDDIGSTIRELIKKAREWVEEANHFLSSIDTTIR MQLKWRPLPAKEQGELSTDKLVELLSKETRWLNNHDLERIAEHFKTKVDQARAMAKAD TRFSLTDKMKELLDYRKWYRFVLYYQKEGQTDFDEFSNKEFEKMSGGEKGISMYSPLF AAAAAKYAHAASHSPRLFSLDEAFAGIDHDNIENIFGLISQFDFDYLMNSQILWGTYE TVNKLSIVEILRRVHEKTLVLGRYYWDGENKHDLPIGHLIEEYFAEKLSR" gene 2191636..2193765 /locus_tag="Dhaf_2036" /db_xref="GeneID:7259005" CDS 2191636..2193765 /locus_tag="Dhaf_2036" /inference="protein motif:PFAM:PF07714" /note="PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: bay:RBAM_037890 hypothetical protein" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="YP_002458509.1" /db_xref="GI:219668074" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR017441" /db_xref="GeneID:7259005" /translation="MESSLQELVQVFRNEKGFNTLFSLFREKYRSYGRISKGTKVIIT NPSVHELQTLAGFFGEAYKGNNAIMVTAAKFERAIMKSKYKELFQGHDVNDLLQLYFG GYLTSKGEDRCNFDRKKEQFFQLFLSQSKSGSFFYNFISFITHYKNAPFIHLMYKKDS DVLRQLLLLINKLFDQLPLNSDVFLPMLSYKLTDNFHALAPKSDSGRMILFALQVLNH LDNGADIISKPDEDQITDILQGYHIRFCPDSNKLAHRLWISESTNNGDYRYQLIPLIK IGTGGFAEVYMVFDPIAKKEMACKVLYEKAVFLQWYGKEGEDYLQRFKREVKLLREKI SHQNIIEIDKMQLEHDPAFFTMPLAETSLEKWLELNPSLSEETKLSIFKDILNGVFYL HDYKISHRDLAPHNILLFPQSDETRLAKVADFGLAKDHRSLSSITRHSNMSYGRGAFT APEQRKSLKNADFLSDVYSLGALLFYIYSGKSPEQRFTSFIRYQHIVGKAMEEERSKR YQSVQELMDDIDQTIYNSAQNSYSFNSLLTYEFRNVCGDVDHVLKCLPTVNVESPSQV CGKFVRPFIAIPTEVLTECAKNETVMIPFLHIAKENISRAKDCSEAEWNHVSLRFNGI YEGTEKLGLKMYSLNLILITALEKKNLLAQTILVSILGSLESQGRLSQQIAHMIEKEF PVYHELLISLLQETNYPLDIRDALNDY" gene 2194046..2197498 /locus_tag="Dhaf_2037" /db_xref="GeneID:7259006" CDS 2194046..2197498 /locus_tag="Dhaf_2037" /inference="protein motif:TFAM:TIGR02512" /note="TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_3003 hydrogenase, Fe-only" /codon_start=1 /transl_table=11 /product="hydrogenase, Fe-only" /protein_id="YP_002458510.1" /db_xref="GI:219668075" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR002345" /db_xref="InterPro:IPR003149" /db_xref="InterPro:IPR004108" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR013352" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259006" /translation="MKEVTKQQRIRVTVNGRQMEVYGDLTILQALLQEDIHIPHLCYD IRLERSNGNCGLCVVELGEGSEQQDVKACHTPIQEGMIIHTNSPRLEHYRKIRLEQIL ADHNADCVAPCVMTCPANIDIQSYLSHAGNGNFETAIKVIKERNPFPIVCGRVCPHSC EAQCRRNLIDEPVAINHVKRFIADWDIAHEQPWAPRKKAATGKKIAVVGAGSSGLSAA YYSAIQGHDVTVFERHPRAGGMMRYGIPEYRLPKETLDREIGLIADLGVKIMTNKALG THIRLEDLHQDFDAVYLAIGSWRATPLQIEGDNLEGVWLGINFLEQVTKGADIKLGEH VVVIGGGNTAIDCARTALRKGAGSVKLVYRRTREEMPAESYEVEEAIHEGVEMYFLTA PHKIVAEGGRKLLHCIKMTLGEPDRSGRRRPIPIEGSETAFEADTIIGAIGQSTNTQF LYHDLPVKLNKWGDIEINGKTMQTSEMNIFAGGDCVTGPATVIQAVAAGRHAAEAMDS FLMKGYVKEQPMDYSCSRGSLEDLPQWEFEKIPRLKRAPMPALPPAERRDNFREVETG LSEETARAEARRCLKCGCYERYDCDLRQEASLHHVEFKKPVHERPYIPIVEDHSIIIR DHNKCISCGRCIAACAEVEGPDILSFYMKHGRQLVGTKSGLPLDQTDCVSCGQCVNAC PCGALDYRSEIGRVFRAINDPGKTTVAFVAPAVRSVVSSQYGVSYQEASRFIAGLLKK IGFDKVFDFTFAADLTIVEETTEFLTRLQSHKPIPQFTSCCPGWVNFVERRYPEIIPY LSSCKSPQMMMGATVKNHFTELTEIDPKDLYVVSIVPCIAKKYEAARPEFRSEGIRDV DAVLTSTEMLEMADIKLIEPADVEPQDFCEPYKRVSGAGILFGASGGVAEAALRMAVE KLTGEVLTDQLDYQEVRGLQGIKEAAVEAKGKKVNVAVISGLHNVEPILEKIIEGMEV GYDLIEVMACPGGCICGAGHPVPEKIDTLEKRQQVLVNIDQTSRYRKSQENPDILRLY DEYYGEANSPLAHKLLHTHYEAVKREPVAKHDRRMADSAFVTHELTLCTCDKCTAQGS RELFAALSGKIRKLKMDSFVTARTIRLKENHPGQGVYAAIDGKLIETPVEQLEQRIFQ HLIR" gene 2197702..2198622 /locus_tag="Dhaf_2038" /db_xref="GeneID:7259007" CDS 2197702..2198622 /locus_tag="Dhaf_2038" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002458511.1" /db_xref="GI:219668076" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7259007" /translation="MKLEQLHYLKEAIRYRSLSIAARENFISQPSFSAAITGLEKELG VKLLNRSNRGCTPTDICMEIMDRADTIFAMVEEIELLASNSSYCETINIAVVLSICEE ILPQVLLEMEADKVFCKVAVASLEGEAIYPRVASGSSVLGIVAYIPKLLTADLKYTPL FEDEYVLYIGQHSPFWEQGSVSLEQMLSQPYIALGDDFATPNSDWAKDILAFSMPKVE SQVSNLNTLKKMIINGPYVSLLPRFMVADDIYVKHNLMKPVRIDDIYLAAQFGYIENT RYKLTKNYTVFLDYFRKILTRLGYTVYKTV" gene 2198848..2199753 /locus_tag="Dhaf_2039" /db_xref="GeneID:7259008" CDS 2198848..2199753 /locus_tag="Dhaf_2039" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: drm:Dred_0726 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002458512.1" /db_xref="GI:219668077" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7259008" /translation="MKYKPELGILIVTILWGASFAVSKLIMADITPNYYTFLRFAGAF LVLALCFHKRLRHIPKQTLQAGVIIGLAIACGYVLQTMGLNYTSASKAGFLAGLYVVL VPVMESFLCKTLPRYNMILGVFLATAGLALLSLERDFTIGFGDLLVFVGAVFFAVSMV LISRFASKHDPMVLAIIQIGVTALFSLVLAMFTEPGLSPAQFTPALLGLVLFAILFGT AVNTAVQNWAQGYLTATTAALIFVLEPVFAGVFGWLLVGDVIGMKQISGSALIISGML VTLLLKPGQRPQGKTGHEAQLSGRS" sig_peptide 2198848..2198913 /locus_tag="Dhaf_2039" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.942) with cleavage site probability 0.744 at residue 22" gene 2200117..2200641 /locus_tag="Dhaf_2040" /db_xref="GeneID:7259009" CDS 2200117..2200641 /locus_tag="Dhaf_2040" /inference="protein motif:PFAM:PF00857" /note="PFAM: isochorismatase hydrolase; KEGG: lla:L67226 amidase" /codon_start=1 /transl_table=11 /product="isochorismatase hydrolase" /protein_id="YP_002458513.1" /db_xref="GI:219668078" /db_xref="InterPro:IPR000868" /db_xref="GeneID:7259009" /translation="MKVLIVIDMQNDFIDGALGTEEAVNIVDKVKEKIDSYLAAGDTV IYTQDTHTEAYLQTQEGQRLPVEHCIKGTPGWAISPRVYVSGCQVIEKPSFGSIELAE LMAGMKEIQSIELIGLCTDICVIANAMILKAKMPEIPIVVDSSCCAGATLAGHQNALQ AMKICQIEVQSNRS" gene complement(2200623..2202092) /locus_tag="Dhaf_2041" /db_xref="GeneID:7259010" CDS complement(2200623..2202092) /locus_tag="Dhaf_2041" /inference="similar to AA sequence:KEGG:CD3038" /note="KEGG: cdf:CD3038 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458514.1" /db_xref="GI:219668079" /db_xref="GeneID:7259010" /translation="MMSEFENQVQELYAQATLIMEEFYRSQRQGHQAVIHIPQEFKDE FFSLVDQVNLSLLEDKDNFYSYFLMQMSREIRFDITSPTGVNFQGAHYVIHFNPMLFL NLNLQQMASTIKHEILHILSGHLWRAKALQGRYSTLAINMAMNIVVNTYLDYLPPYSV TLEWVNVHYALKLLPFKPFEYYVEEIQAALDLLAADEAAEDQRDGDEANESDKSKDAE KPKEPDQNNDESQIKTAYDPERTHDLWQESSAADEQTLQEFTEKFIAHAQKGSLPGYL ENMLSSLRNSQGELPWNLYLKRLMGTVPSDIKKTVTRRNRRQPERLDLRGQLRSHQAK ILVALDISGSISDQEFNQAIKEVLAMVKNYNHEIIIVECDSEIRRTYKIKTVRDVQER LKIRGGTRFTPVFEYANEHKINLLIYFTDGQGEEKLQTIPRGYKTLWVISGRGKELSL AKPYGAVKKLKQMAVKDDTLKMSDVKTEGFSMQDQERLD" gene complement(2202098..2203288) /locus_tag="Dhaf_2042" /db_xref="GeneID:7259011" CDS complement(2202098..2203288) /locus_tag="Dhaf_2042" /inference="protein motif:SMART:SM00382" /note="SMART: AAA ATPase; KEGG: cdf:CD3039 hypothetical protein" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_002458515.1" /db_xref="GI:219668080" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259011" /translation="MNYTDTLKSVDLVLATGEVPLIIGESGIGKTALAKELAQQNQWS LVIINGNLLKEGEIGGLPTIESYVFSGPEAVNPLAATAAKTVGNEQGILQEKKSTVYA VHHKLREIDEAIARGQTVLLFIDEINRCEHTVQQELMNLILNREINGYILPEGVKILA AMNPSSKYGSDFDYQVVDMDAAQENRFVWLFMKPDHKQWIDWAIGAGIEPKVIEFIST FPDYLHKINEDDLRATPRSYERISSSYKIYQENKDSIPRSVFLNVVKGNVGRVIAEEF VNFAEADYSPLIAYDDIFSGTSLPESLRDKVKEESHTRLYLSARNILQTLESHLSKTP ANAPDHAQSSMDRLVAFLKLYPVDLKIGIMKDIRSSYPEIYRQAIENEGFVDSYFESY GSLR" gene complement(2203303..2204103) /locus_tag="Dhaf_2043" /db_xref="GeneID:7259012" CDS complement(2203303..2204103) /locus_tag="Dhaf_2043" /inference="similar to AA sequence:KEGG:CD3040" /note="KEGG: cdf:CD3040 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458516.1" /db_xref="GI:219668081" /db_xref="GeneID:7259012" /translation="MDKAKLIDLIKTNPNALVYIPNPSDELKLLAVQKNGLALKHIEH PTPEMQELALANNSRAIQFIDNPTEEMMNKAIQDSWVNLEYLQHPSETIIKLAITQAG WAIKYVKHPSEELQLLAVRRHYDSIKFIKDPCPKAQEEAVRINYDALRYIDSPTPQAE LLAIRNHESAIAFVKDLSKEKILQFLGVNFLVIKYVRNDITKAELEQVLKETLGQEDV DEKYVRDFLNSSTIHKNSGQMSLDKIMFIYHYGSRKAKKVAVDEKLKI" gene 2204394..2205059 /locus_tag="Dhaf_2044" /db_xref="GeneID:7259013" CDS 2204394..2205059 /locus_tag="Dhaf_2044" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cth:Cthe_2404 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002458517.1" /db_xref="GI:219668082" /db_xref="InterPro:IPR000485" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7259013" /translation="MPIMNTQINWRTKTEMIYSTLREAIVSGDIKTGEKIVLSKVASD LGVSPSPVREAIKQLAAEGLIDLTAHTEAVVSRLSEKDFREFTEIRVILESEATKCAT KQVTPEFIAKLEDILAKMQECVDQEDSKRYGVLNREFHETIYESCGNEQLTKLIDSIT VRTDRARAVFSYDYSRLMESFQEHQDIVEAIKAGQAEKAGDIVATQTRAGLESYLKHS LNQ" gene complement(2205448..2206077) /locus_tag="Dhaf_2045" /db_xref="GeneID:7259014" CDS complement(2205448..2206077) /locus_tag="Dhaf_2045" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: gsu:GSU2203 cytochrome c family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458518.1" /db_xref="GI:219668083" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7259014" /translation="MKMTSVKKVPATKTIGVVMIVIMLFALTALVFGCVPSTETGAKG NSPEAPANDPYAVSFTWETNADCSVCHQKEHNSFADATTKAGVHSTLPCSTCHTDSAL STVHKEVTSASKTPIRLRSTKVEQATCLNCHENLESLAQKSAGTTVLTDAKGTVVNPH ALPETSDHAIISCVSCHKMHTAEAVEKTAQDLCISCHHEKVFTCYTCHD" sig_peptide complement(2205448..2205549) /locus_tag="Dhaf_2045" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.832 at residue 34" gene complement(2206085..2207800) /locus_tag="Dhaf_2046" /db_xref="GeneID:7259015" CDS complement(2206085..2207800) /locus_tag="Dhaf_2046" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: gur:Gura_0801 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458519.1" /db_xref="GI:219668084" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259015" /translation="MSEKDGKTNSKNLSRRDFLRNTGILAGGAVLGTGLLAGCSEGAA KDTPAPAGEAWDYEADVIVCGTGPAGLACAAAAAEAGVSVIAIDSNDKIGGKGILAGG NLGIGGGTRMQIAAGFEETAEIIYEDRTVPNLRTDKTMVVETVDGREVEMGQWRKISG AEDGEGMARAFADNSLDTWNWLDIMGVPFIKANVSQMAAVYRGSRYYTTTSPRLVDRE NGKDGDMQAGGAGLCWPIYDTAVDNGAQFILSCKMTKILRAEGDRAGRVIGIEATLDG KTVRMKGNKAVFLGTGSWKGSTKLKQLFLPWLTKYPHISGEPYVWNDGNGIEAALDAG ASLSTDRGSDWHGWHRHPGTLWHSIKMPFGLPGTAEPLDSECIYVNTEGKRFMNEEIG EDNPAWVGGSKPFYFAQLCAAQTTDKDGPVVWIILDEASRAKQELKFIVGETVEDFMY GTADTLEELAAAIKVPADALVASVTRYNELVDKGADEDFAKRHLNAKIAAPPFHAVKW GIQKHNTLGGVTINAKAQVVDWDLEPIPGLYAAGESAGNMDLIGLAKPIVFGRIAGMT IAHEE" sig_peptide complement(2206085..2206219) /locus_tag="Dhaf_2046" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.914) with cleavage site probability 0.459 at residue 45" gene 2208193..2209998 /locus_tag="Dhaf_2047" /db_xref="GeneID:7259016" CDS 2208193..2209998 /locus_tag="Dhaf_2047" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cbb:CLD_2687 aor transcriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458520.1" /db_xref="GI:219668085" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259016" /translation="MQMYDLLQMIQSGEVNSRYFTKVNDQWNRFQEGREVDNSVVPQE YLDSWKRCRAYGLDPYDLTLSVVENPKQKEFFLNTVKKYEFYLQSVFEIFDLSDFLFK LQTRDGICQLLGQSTLTLMDCSEKNSGTTSSSIVLYEDKPAVIFQPFYYRQTYVRKNF GEIHGASAPIHNEKNELIGDVVLLYHYPELSLQAFHMVSLIAKIFDYLYWPLAFGHER QLEQIMNCLPQGIALGSKKETINFCNEKMVDLFEIRKKQNTGQGRKKSLPVFMKAQND LYTFNHIKGKSPLIQKAKNTAEKIADTYVPVMIYGESGTGKEMFAQAIHNASSRSGGP FIAINCGAIPGELVESELFGYEEGAFTGASKGGKVGKIEAASGGTLFLDEIESMPLKD QIKLLRVLSTGKVQKIGSTKEVPVNVRLISATKTDLLQQADESLFREDLYYRISTFIV ELPPLRERKEDIILLAEEFIQRLEKRYSRSSIEMDWSFINALLSYKWRGNVRELEHAM EHAVIMLDKQSSLLLEHLPEKIQDYYLNNTTEEIVEEAMEHENKFGLLALAEQKMIER VLDSVDGNISAAAEQLGINRRTIYRKLQRKETLDS" gene 2210495..2210914 /locus_tag="Dhaf_2048" /db_xref="GeneID:7259017" CDS 2210495..2210914 /locus_tag="Dhaf_2048" /inference="protein motif:PFAM:PF07681" /note="PFAM: DoxX family protein; KEGG: cdi:DIP0866 hypothetical protein" /codon_start=1 /transl_table=11 /product="DoxX family protein" /protein_id="YP_002458521.1" /db_xref="GI:219668086" /db_xref="InterPro:IPR011637" /db_xref="GeneID:7259017" /translation="MSALVHFFSFVQGFSDLTLVIVRILAAIVFASHGWFKSFGKQKF RGSAERFAERGIPFPLLASYITSWSQLIAVPLLVLGFMTQWIALLLALEMIVAAWAKY MDTHAIFDGMDLPLGTLAICLVLFVLGPGAYSLDALL" gene 2210942..2212399 /locus_tag="Dhaf_2049" /db_xref="GeneID:7259018" CDS 2210942..2212399 /locus_tag="Dhaf_2049" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; KEGG: cno:NT01CX_2400 anion transporter family protein, putative" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002458522.1" /db_xref="GI:219668087" /db_xref="InterPro:IPR001898" /db_xref="GeneID:7259018" /translation="MDNLDPVVKEQNDIVVKVQNDTKTKVYALIGAIILGILVWFLGE GLGPQGRMALALTMTAIVLWIFEVYPVEITAVLLSTFFVFTGSATPVEAFSGYGDAIV WFIFAALVFGTAVEQSGIGKRIACSLMRFSGTSFKSMMGIIVLVGALLSFLTPAGVER LLIIYPIAIGVAAVFVKGNVQGTNTGKLAMSITYLAGNTFGFGILTGIAVNILGAGII KEMLGIEIFWSQWILWFGVPTVITTLIAIFVAWKLFPPEDYVLTAKKENANQDFMNLG PMTIVEKRALLYLVITLGLWATDRWHHLPSWGVAIFSAALFCAPGFGVISKEQLKKIQ FPIVIFSGAAITIGTVLGKTGVAAWIGKVFLGSFIRPDMSTQLMGAITYLVGVVAHIP LVESKTAAAAFTPAVAAYFDSMQLPALGPTLMSIMSADTVAFFPYMMMPFLALMGLGY FTTKDSIKLLSSYTFVAIIVQVISCFTWYHWVGLL" gene 2212678..2212974 /locus_tag="Dhaf_2050" /db_xref="GeneID:7259019" CDS 2212678..2212974 /locus_tag="Dhaf_2050" /inference="protein motif:PFAM:PF08666" /note="PFAM: SAF domain protein; KEGG: rxy:Rxyl_2591 altronate hydrolase" /codon_start=1 /transl_table=11 /product="SAF domain protein" /protein_id="YP_002458523.1" /db_xref="GI:219668088" /db_xref="InterPro:IPR013974" /db_xref="GeneID:7259019" /translation="MGKHKFLVHEDGDYVGVAIEDIKAGEDVMGVELHSGKKFQVTSN HDIPLGHKIALRAVKKGEALIKYSESVGTVIQDIKIGDWVHTHNLKTARWDYGN" gene 2212964..2214118 /locus_tag="Dhaf_2051" /db_xref="GeneID:7259020" CDS 2212964..2214118 /locus_tag="Dhaf_2051" /EC_number="4.2.1.7" /inference="protein motif:PRIAM:4.2.1.7" /note="PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: rxy:Rxyl_2590 D-galactarate dehydratase/altronate hydrolase-like protein" /codon_start=1 /transl_table=11 /product="Altronate dehydratase" /protein_id="YP_002458524.1" /db_xref="GI:219668089" /db_xref="InterPro:IPR007392" /db_xref="GeneID:7259020" /translation="METKILGYRRENGRIGIRNHVLIIPVDDLSNAVCLAVEHNIRGT MAVPHPYGRLQFGADLELHFQTLIGTGRNPNVAAAIVVGIEPNWAKKIADGIAETGKP VAYFGIEGYGDLKTIERVSRQAQEYVQYATSLEKVECELKELVVSFKCGESDTTTGLA SNPTAGVVGDRLVEMGGTIIFGETPETTGAEHVLARHFATPELAGKFLKVHKDYLDLI ESKGADLLGTQPTQGNIAGGLTTIEEKAFGNIQKAGKTPIVGVLAPCEEPQGPGRYFM DTSSAAAECITVMMAAGAVLHIFITGQGNIVGNPIEPVIKMSANPNTCKHMAEHIDVD ISGVLTLELSLEEAADKVMECLVKTARGRLTDAEALNHNEFVLTRLYPSA" gene 2214296..2215054 /locus_tag="Dhaf_2052" /db_xref="GeneID:7259021" CDS 2214296..2215054 /locus_tag="Dhaf_2052" /inference="protein motif:PFAM:PF02633" /note="PFAM: Creatininase; KEGG: xau:Xaut_2638 creatininase" /codon_start=1 /transl_table=11 /product="Creatininase" /protein_id="YP_002458525.1" /db_xref="GI:219668090" /db_xref="InterPro:IPR003785" /db_xref="GeneID:7259021" /translation="MTSETNNYLLELTQPEAEAILRRSQLAIIPNGSVEQHGPHLPCG TDHYCIMAIARKVASGLDGLLLPFSHTGVTPFHASFAGTLTLRQETYVNLLLDTAVSV INHGVQKILFVNWHEGNTTSINYAASQLQKEYGVTCVVAQACYITEQLYKGEADLTHA GALEVLPVMAYRPDLLKLERATNPSPYEAAKEVDALRRSKSVYPILKDIRQIAPTGWY GDLDIVSEEKAAELVERVSGEIITAAQQVFERMQ" gene 2215073..2215429 /locus_tag="Dhaf_2053" /db_xref="GeneID:7259022" CDS 2215073..2215429 /locus_tag="Dhaf_2053" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: mka:MK1642 mannose-6-phosphate isomerase" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002458526.1" /db_xref="GI:219668091" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7259022" /translation="MFTLVNINEAKFQQATGRRIAELVSAAVTGTEGVTCRVVEVLPE HQGGARQPHTHCDVEEVIFVLEGQGKIWVEEQEKDILKDDLIVVPMETEHRIINPGGQ RLRLLCFFPKARVEVP" gene 2215488..2216450 /locus_tag="Dhaf_2054" /db_xref="GeneID:7259023" CDS 2215488..2216450 /locus_tag="Dhaf_2054" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tex:Teth514_0128 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /protein_id="YP_002458527.1" /db_xref="GI:219668092" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:7259023" /translation="MAQYTVLSTSPTFTKYSPQAAGILEKKGCRLVMIPPNGLRERED FKAVLAEAHVWVVGINKVYAEDLEAAPNLKLIIKHGTGVDSIDLKAAAARGITVANAP GTNANSVADLAFGFMLSLARQIVSADKRTRDGFWGTVMGKDVYGKTLGVLGLGQIGKG VIRRASGFDMNILGYDLVHHSQFEKEYRVRAATLEEIMSEADYISVHLPLLESTKNII DRSLLEKMRPTAFLINTSRGGVVDETALYDLLKEKRIAGAALDVFATEPPRQSPFFEL DNVIVAPHMGAYTEGAMGAVSEILAESIVRVLAGKEPLSVIKTN" gene 2216471..2217685 /locus_tag="Dhaf_2055" /db_xref="GeneID:7259024" CDS 2216471..2217685 /locus_tag="Dhaf_2055" /EC_number="2.3.3.13" /inference="protein motif:PRIAM:2.3.3.13" /note="PFAM: pyruvate carboxyltransferase; KEGG: mka:MK1209 trans-homoaconitate synthase" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_002458528.1" /db_xref="GI:219668093" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="GeneID:7259024" /translation="MNGKWWTKDWWVSEYNYHEEVVKDLHLPQKIEIHDATLRDGEQT PGVVFSKEDKVRIAELLAEVGVERIEAGMPAVSKDDAQAIEEIAKRNLGPKIMVFCRA MREDVDRAVDCGADGIVLEAPSGYPKLKYQFASKWTEESLTEAVVNTINYAKEKGLFV NYFPFDTTRAELPFLKRLLTNVTTQAKPDSVTVVDTTGSITPTAMRFLVRQVRETIAL PLEVHTHNDFGLGTATTFAAVEEGVQVVHSCINGLGERTGNTALEEIALGLKLLYGIE LPKFNFQKLSELSQEVQRMSGKTLAQNKPVVGLLPFTREIGLGMKVLEDYPTAVFPFM PDFVGQKMKIVMGKKSGKESVLMKLEAAGLKANEEQVQEIVARTKAAGIAKRNWLEDE EFLVIARQVLDR" gene 2217705..2219507 /locus_tag="Dhaf_2056" /db_xref="GeneID:7259025" CDS 2217705..2219507 /locus_tag="Dhaf_2056" /EC_number="1.2.7.5" /inference="protein motif:PRIAM:1.2.7.5" /note="PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: gbm:Gbem_0312 aldehyde ferredoxin oxidoreductase" /codon_start=1 /transl_table=11 /product="Aldehyde ferredoxin oxidoreductase" /protein_id="YP_002458529.1" /db_xref="GI:219668094" /db_xref="InterPro:IPR001203" /db_xref="InterPro:IPR013983" /db_xref="GeneID:7259025" /translation="MVFTHRIMEVNLTTQTHGQYAIDPKWARDFIGGRGLGIRLLWER TPKGIDPLAPEAELYLLTGPLTGIAPGGAHTCLVFKSPQTNTLNYSITGAQWGQELRA AGWEGLMITGRSERPVYLLIEDGAVQFRDASHLWGLTTFAAERQLREELKDSRVRILN IGPAGEEMIPYASIQQEMFRSAARGGSGAVWGSKNLKAVAVRGTMALPVHNPSQAIPI RNEMEKILKDSRTTIRRTYDLMRWGGSMTNMPHSDEGHLDVANYREGHWPEINKIGGL AYERLCRARSRGCFGCPMGCMPLGVVREGEFSGNVVCPDLEAAATMGSGILVNDLNAM VYLTRWADEYGFDSTSLGNITGFAMECYENGLLPEAELEGIDLSWGNVEGVLALWNKI LKREGIGALFAEGVKKAAAKIGGGSEHYAMQVKGREFACFTPQADHKQGLQYAVSDKG PAHHFGGKADHTQQRTWADLLTACTWQRRMIKPEVYLKLLNAVTDWQLQAGDWPLTAR RILLLARAYNIREGLLPLRDDVPPERVHVDKLTTGIGAGQVYPREQFSMDRKAWYGEL GCDAGGFPTPEALKEHGLEFAVPVVESSRRDSVQ" gene 2219540..2221210 /locus_tag="Dhaf_2057" /db_xref="GeneID:7259026" CDS 2219540..2221210 /locus_tag="Dhaf_2057" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ava:Ava_4067 putative oxidoreductase" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458530.1" /db_xref="GI:219668095" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004112" /db_xref="InterPro:IPR006076" /db_xref="GeneID:7259026" /translation="MKNECWIKTDVLVVGGGSAGTMAALEARKTSQEVALVDKGGIYR SGCGAAGNDHFLAVLESGPDWDTPEVFLQWYKRLTQGLSDIKIADKVFVRRIKSLVKE LEEMGIPMKDPGHKEYIRTRSFAQPGDYFINFDGRALKPMISKRAEQAGVKLYAQIAI TDLLVKKGKAVGAVGFHIRTGDFYVFQAKVVVLATGNATRMYENPSGMAFNTWHSPYN TGTAQAMTLRAGGEVKNLEFVNYTITPKNFSASALNAVVGMGGHLVNAKGERYVFTYH EKGEQGPRWAMPWGTYIEEQEGRGPCYFDVRHLSEKDKKHLLEHLLPVDKNTFMDYCE QKGIDPGVDLMEIQISEGQHPAFLGSVSGIFVDECCRTTLPGLFAGGACAVGIGSLAG SMCFGQSAGAEAAQYALQNRKGAEPSPEQIAELKQTVYAPYQSRGDYTYQEAEDKLRQ IMSDYLSINRSAEGLKTGWQELNKLQETFGLVKAENGHDLMRIHELRDLLLISKGIAF GALTRTESRFGLSHYRRDYPETRAEWHKSTHLTCRDGELQVHYVPADS" gene 2221276..2221479 /locus_tag="Dhaf_2058" /db_xref="GeneID:7259027" CDS 2221276..2221479 /locus_tag="Dhaf_2058" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0272 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458531.1" /db_xref="GI:219668096" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259027" /translation="MQPVKIDYIRCNGCGLCEKNCPGDLIFMDERTKMPVVRYPEECW LCGACRMDCPKDCIKIVFPLVAL" gene 2221504..2222997 /locus_tag="Dhaf_2059" /db_xref="GeneID:7259028" CDS 2221504..2222997 /locus_tag="Dhaf_2059" /inference="protein motif:PFAM:PF01970" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: art:Arth_4351 protein of unknown function DUF112, transmembrane" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF112 transmembrane" /protein_id="YP_002458532.1" /db_xref="GI:219668097" /db_xref="InterPro:IPR002823" /db_xref="GeneID:7259028" /translation="MLQASLDGLLSLFTFQAMLYMTIGVAFGLVIGFLPGLGGIVAMA LLLPFTFGLEPTAALALLLGAHIATIFGSSISGILFNVPGAAKSVTICFDGYPMSQRG EGSRALGAAAMASLLGGIIGAVFLTFSLPFMRAVMLALGPSEYFMMAVWGLTIIAIFS EGSVLKGLVAAGLGLLISFIGMDPVTSTARYTFDLLFLLDGIDFSVAVIGLFAVSQMI KLYVKGETIAQLSTVENKCTVWDGVKDVFRHWRLVISSSILGLFIGVLPGVGASVGGI AAYGQAVQTSKHPEKFGTGMVEGVIAPEATNAANEGGGLIPTLGFGVPGGESMTILLS AFLTMGIQPGRELLTTNLSVVFAMVWIIVFANILTTGVGLGIAQKLTKLTMLPHNILI PVILAVCFIGAYSIRGRFGDVVVTAVFGVIGYFLDKYKYSRADLVIGMVLGMMIERYM HISLTLYGNTFFITRPVTFIMLLIIIVTTAYPFIKRWRKSATTGGAS" gene 2222997..2223557 /locus_tag="Dhaf_2060" /db_xref="GeneID:7259029" CDS 2222997..2223557 /locus_tag="Dhaf_2060" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: art:Arth_4352 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458533.1" /db_xref="GI:219668098" /db_xref="GeneID:7259029" /translation="MSNLKVSKRAVSQRTQENIVAIILFLIFVGFLVVSFDYGSRARM IPVPVAIASLFLILLQFIIQNTNTKLDLNVNPADLFKSSQSGITIEDEKKETIGVTGG KKQAGGSQWVALSWLVIILLLILLIGLIPAMCVFVLGYLLLITKMKWHVAACFAAINT IVLYVLFVLLLQREMYEGLLLTLLFR" gene 2223687..2224733 /locus_tag="Dhaf_2061" /db_xref="GeneID:7259030" CDS 2223687..2224733 /locus_tag="Dhaf_2061" /inference="protein motif:PFAM:PF03401" /note="PFAM: conserved hypothetical protein; KEGG: art:Arth_4353 uncharacterized protein UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458534.1" /db_xref="GI:219668099" /db_xref="InterPro:IPR005064" /db_xref="GeneID:7259030" /translation="MLKRSKWFVVFMVVALLVSSIAGCSSSAGSTAPAGGEKLFYEGK TITLIVPNTAGKGMDTYARMIVPYIQKYSGAKNIIVKNITGAGGVIGINDLWNAKPDG LTIAFTSIPTIILSQLSEGEGVKYDATQFTYLGRASTEARILTVGGNSSIKSIEDIAD LGRDFKFPTQGTDEDFFTMAVIANSLGFGLKAITGYEGNADTALAVVKGDGDGHITAA MDAVTMIKEGDKRPILIIAPERMPEYPEVPTALEAVQDETGKASLQAIVNMLEMHRSF FGPPNMDEEATIALREAIFQALNDPELQAKAEQTGLPIVPLKGDEEQGKVEIIAEAGK NIVPILKAAVEATK" sig_peptide 2223687..2223776 /locus_tag="Dhaf_2061" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.352 at residue 30" gene 2224808..2225929 /locus_tag="Dhaf_2062" /db_xref="GeneID:7259031" CDS 2224808..2225929 /locus_tag="Dhaf_2062" /inference="protein motif:PFAM:PF08309" /note="PFAM: LVIVD repeat protein; KEGG: ace:Acel_0894 hypothetical protein" /codon_start=1 /transl_table=11 /product="LVIVD repeat protein" /protein_id="YP_002458535.1" /db_xref="GI:219668100" /db_xref="InterPro:IPR013211" /db_xref="GeneID:7259031" /translation="MALKLIGQNSLQGHGKTMQVMKYKDYLYVGNMVPGIGTIIVDVT NPSLPLVCGEMPAYKNALCSKVQIVDDLMIINYECRTGKPAERLGFSIYSLQDPKNPR EIAYYHVGGQGVHRTWYSGEEPYIFVTAVPEGFSDRMLLIVDIKDPAHPQEVGRWWYP GLWTAGGEKPDQPQGLKYKLHHAMVHKDRAYLGMWDAGMYILDISQISNPQVAGSINW GPERGGHTHTGLPLPRRNLLVVTDEAKGLPGEESLKAVRILDIKDDKNPRVLSEFYVE NEDYGRYGPRFGPHNLHENRPGSWQSDEIIFVTWFGGGLRVVDISDPCRPKEMDRLIP PPVAGMPPTQVNDVFVGQNGLLYLTDRAGSGIMIAEFTG" gene 2225958..2226476 /locus_tag="Dhaf_2063" /db_xref="GeneID:7259032" CDS 2225958..2226476 /locus_tag="Dhaf_2063" /inference="similar to AA sequence:KEGG:Tpen_1412" /note="KEGG: tpe:Tpen_1412 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_002458536.1" /db_xref="GI:219668101" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7259032" /translation="MPKQLHIRYDLCTGCRACELACALKKEAAFWTETASIRVRQVGT GPLDIPVFCHQCSDHPCVQACPAADKALWADEEGIVRVQEGFCFRSRGIDCQRCRRAC PGNSIAYHPVSNLPMFCDRCGGEPECARVCASGALAVTNNESFDGKHYALPEEQIVND LYLRLYGTRIVR" gene 2226513..2227574 /locus_tag="Dhaf_2064" /db_xref="GeneID:7259033" CDS 2226513..2227574 /locus_tag="Dhaf_2064" /inference="protein motif:PFAM:PF01408" /note="PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: msi:Msm_0882 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase" /codon_start=1 /transl_table=11 /product="oxidoreductase domain protein" /protein_id="YP_002458537.1" /db_xref="GI:219668102" /db_xref="InterPro:IPR000683" /db_xref="InterPro:IPR004104" /db_xref="GeneID:7259033" /translation="MYNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREK FGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSL DHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIGEVSSIEAVFSNERGLE LKKGNWRGEPATAPGGPLTQLGVHQIDNLQFLLGPVARVFNFGKPMYTEVENITVNQT LLEFEDGKQAYLGTNWACPGVFSINVYGTKANLFYQLDFSWWSNSDVTDEHSTLIKRE FASMSDDPDNRILRDVKVDFESVDHLRVEVEEVADVIRNGGETEIGAEASLRNLAVVL AAVKSVHEKRPVEIAEIIG" sig_peptide 2226513..2226575 /locus_tag="Dhaf_2064" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.611) with cleavage site probability 0.602 at residue 21" gene 2227718..2228890 /locus_tag="Dhaf_2065" /db_xref="GeneID:7259034" CDS 2227718..2228890 /locus_tag="Dhaf_2065" /EC_number="6.2.1.5" /inference="protein motif:PRIAM:6.2.1.5" /note="PFAM: phosphoribosylglycinamide synthetase; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: rrs:RoseRS_3930 succinyl-CoA synthetase, beta subunit" /codon_start=1 /transl_table=11 /product="Succinate--CoA ligase (ADP-forming)" /protein_id="YP_002458538.1" /db_xref="GI:219668103" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR005811" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR013650" /db_xref="GeneID:7259034" /translation="MYLYEYEAKEVFSKYGIPLGQNGIATNPAEAGMICAGIGKPVVV KAQVMAGGRGKAGLILPAADPEAAAKAAAQILGKEHHGEQVKKLLIEEQIEIAREVYA SITMDFTEGKPVMMVSAQGGMEIESLAAANPELLIKEHIDPWREVFGHRLRDLWRRAG FRGGQVVELENILGRLVRVFLETDALTAEINPLVMTQEGKIIAADAKLILDDEASFRS EIIRNASRPEINPLEKRAGDLNVTYVSIEEGGDIGIIAGGAGLSMATMDAVYGIGAKP AAFIDLGGGISRERMKESLLLMTETPNLRGIIINVFGGINNCLTMAAGLADFLDEKPT DVKIVVKMRGHEQEEGWRILERYGIPTVKFETTDVAIRLLMQVLAKEVTAGGTHHQ" gene 2228871..2229752 /locus_tag="Dhaf_2066" /db_xref="GeneID:7259035" CDS 2228871..2229752 /locus_tag="Dhaf_2066" /inference="protein motif:TFAM:TIGR01019" /note="TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: oxidoreductase domain protein; CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mka:MK0732 succinyl-CoA synthetase alpha subunit" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, alpha subunit" /protein_id="YP_002458539.1" /db_xref="GI:219668104" /db_xref="InterPro:IPR000683" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR005810" /db_xref="InterPro:IPR005811" /db_xref="GeneID:7259035" /translation="MGLIINKDTHVIVQGGTGKQGSYHVKAMLEYGTKVVAGVTPGRG GNQVGGLPVYDTVREAKERHKIDASLIMVPAPFVLSAAIEAIDAGVPLIVIVTEHIPV KDTMKINALAQEKGCRLLGPNTIGVINCREKVKIGIMPGFLYGSGRIGLISRSGTLSH ETASNLMFKGLGVSTVIGIGGDQIIGTDFVDALKDFKEDQDTEAVVMLGEIGGNREEK AAEYLQSCDYGKPVFCFIAGRNAPPGKKMGHAGAIIQGSAGTVQSKEDKLRQAGVRIA VSLEDLVESVAGWRQKD" gene 2229778..2230536 /locus_tag="Dhaf_2067" /db_xref="GeneID:7259036" CDS 2229778..2230536 /locus_tag="Dhaf_2067" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rxy:Rxyl_2589 transcriptional regulator, GntR family" /codon_start=1 /transl_table=11 /product="GntR domain protein" /protein_id="YP_002458540.1" /db_xref="GI:219668105" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7259036" /translation="MFMPLKPYGNLSESVVSQIIQALNTGNLKPGDKLPPEREMCEMF SVSRTVIRDALKTLAGLGVVTIRHGMGAFINEVADKPGDISRLASLLQITWGTMEELF QVRGILESKAVFWCTQNATDEGIAELEDIIRSAENSENDSKLALFDAEFHLKICEVAG NRVLVRLMINVLDLLGEVREKVLMIPGRQRLSVRDHQEIVEAIRERNPELACQRMINH LKDIENAVSAALSERGENNQNVPGCPNYKRLPLR" gene 2230675..2231790 /locus_tag="Dhaf_2068" /db_xref="GeneID:7259037" CDS 2230675..2231790 /locus_tag="Dhaf_2068" /EC_number="1.4.1.1" /inference="protein motif:TFAM:TIGR00518" /note="KEGG: tte:TTE0161 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein" /codon_start=1 /transl_table=11 /product="alanine dehydrogenase" /protein_id="YP_002458541.1" /db_xref="GI:219668106" /db_xref="InterPro:IPR007698" /db_xref="InterPro:IPR007886" /db_xref="InterPro:IPR008141" /db_xref="InterPro:IPR008143" /db_xref="GeneID:7259037" /translation="MIIGIPKEIKIYENRVGMPPAGVDALVKAGHTCYLEQSAGLGSG FTDEEYREAGAVILETAQEVYERAEMIVKVKEPLKSEYSLLRENQILFTYLHLAPNQE LTEALLEAKVVGIAYETVELSNKSLPLLAPMSEVAGRMAIQVGAHLLEKTNGGRGMLL GGVSGVEPAKVVIIGGGNVGINAVKIAVGLGAQVIVLDISGARLAYLDDIFGGRVVTL MSNNYNIAKAVRRADLVIGAVLIPGARTPKVVTEEMVKTMKPGAVLVDVAIDQGGAIE SMDRVTSLDDPYFVKHGVIHYSVGNMPGAVPRTSTMALTNATLPYVLKIASLGAEKAM MEDEALRKGLNVYKGKLTIKTVAEAQGLEHTPSEELF" gene complement(2231954..2233000) /locus_tag="Dhaf_2069" /db_xref="GeneID:7259038" CDS complement(2231954..2233000) /locus_tag="Dhaf_2069" /inference="protein motif:TFAM:TIGR01463" /note="TIGRFAM: methyltransferase MtaA/CmuA family; PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: mta:Moth_2102 methyltransferase MtaA/CmuA" /codon_start=1 /transl_table=11 /product="methyltransferase MtaA/CmuA family" /protein_id="YP_002458542.1" /db_xref="GI:219668107" /db_xref="InterPro:IPR000257" /db_xref="InterPro:IPR006360" /db_xref="GeneID:7259038" /translation="MSLGDMTPKERVMAAIYDHDLDFFPAICPTSVANFECMRLTNSF FPKAHFDAQSMADLAASAHHVLGFDTVMPYFSVHLEAEVLGCTISWGDGTVMPVITKR PFDRVEQFEPPANFLNRPLCKQLLKAIRLLKKQSGGEVGIIGKVVGPWSLAYNLYGAE NLLLDTILEPKRTFNFINELSSIPIEFAKAQFEAGADMITWADHVTSDLISAKLYEEF VLPIHKIAAAKLENRGPIILHICGNVMDRLDLIKKTGFKIFHIDSRNDIQKAVEICSD NILLTGSINNPYTLTNGSTSDVKKEVRRNIEQGIKLISPECAIPFKVPNANLLELVNS IHRAPLSSLGKTKS" gene complement(2233052..2234461) /locus_tag="Dhaf_2070" /db_xref="GeneID:7259039" CDS complement(2233052..2234461) /locus_tag="Dhaf_2070" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_2101 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002458543.1" /db_xref="GI:219668108" /db_xref="GeneID:7259039" /translation="MLFLSEIFEINVHIAQDKIIAKLNMSIYSNYEDKNKRNIAISVY LSYTQDQQETFGGDCLDILWYVLEETIQKYSSFFEATAYMLDRNGTVVISSDGSLLGS KLFRSHPHANLNRVIEGGAKELGVAQDFLYCVSVMQNDMFYCYIAAKSEKVAAVSLCC QTAAIAVGELLVANPDRPLPDILKVSEGSRHSMLVDSLLAQPYNHQKTLALFQTAELD GTLLRSIICIEMVFQTNQYFNINLNLGYQPIIEDARSKIISIVEANKYFNTQDICAYR GENKIVIVKSFINNHDISKVYLALDKICESLCEELSGAYLLDFKIAYGNLYNTISKLR CSYEEAKEIISIGKIEYPDKNFYNVDSIITDIICRFLHPQVVNKVFIPLIKRLTNSEG VLEHNLLESCEAFIDSCMNLNRAAHDIMVHRNTLNNRIAKLNSLTGLDPANSFQDALI LKLLIVYLRQQNNLMINEP" gene 2234571..2235587 /locus_tag="Dhaf_2071" /db_xref="GeneID:7259040" CDS 2234571..2235587 /locus_tag="Dhaf_2071" /inference="protein motif:PFAM:PF01636" /note="PFAM: aminoglycoside phosphotransferase; KEGG: rec:RHECIAT_CH0002311 putative aminoglycoside phosphotransferase protein (antibiotic resistance protein)" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_002458544.1" /db_xref="GI:219668109" /db_xref="InterPro:IPR002575" /db_xref="InterPro:IPR008266" /db_xref="GeneID:7259040" /translation="MYDISKERELLDYLQKNGLIEGKDYTVRYFNNGVSATVAMIEND KKSIIAKQALAKLNVAADWACDQSRMLVEQKALTTYSKIIKEYVPAPIFYDEENYIMV REAAPRSSSMWKEQLLKGVLDFSVAEKAAQALSAIHNRTAGDQQVAEEFKEIKFFYDL RIEPYIETVVKVHPQLKEHADRIVDRLMNQKIALVHGDYSPKNILVDQDRLYVLDLEV SHYGNPAFDLAFFTNHFVLKAVKNSRWYNAYLTMLDFIAQSYLKAIEFADAKKFEHEA VQILAYHMLARIDGKSPAEYITDSLDKDIVRAVAFKIIEQDSSCYDDVMSELAAVLRK SKKY" gene 2235600..2236913 /gene="eno" /locus_tag="Dhaf_2072" /db_xref="GeneID:7259041" CDS 2235600..2236913 /gene="eno" /locus_tag="Dhaf_2072" /EC_number="4.2.1.11" /inference="protein motif:PRIAM:4.2.1.11" /note="enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis" /codon_start=1 /transl_table=11 /product="phosphopyruvate hydratase" /protein_id="YP_002458545.1" /db_xref="GI:219668110" /db_xref="InterPro:IPR000941" /db_xref="GeneID:7259041" /translation="MEGFKIKSVKARQVFDSRANPTVEVDITLKDETVGRGIVPSGAS TGLFEAVELRDGEETFDGKGVSKAIHHVNEQLAPLLLDIDVRDQKAIDSRLIEIDGTP NKSRLGANAILGCSMAACWAGANYYKVPLYRYLGGSAANKLPVPMVQIIGGGAHADNA IDIQDFLVIPTSAPTFSEGYEMVVNVYNAAKMIFKGAGKPVSIADEGGLWPTGFQSNE EGLKLLCESIELAGYTPGQDLGIALDIASSEFYDPERGTYRLELEEKTLTKEEMVGML SDWVDKYPIISIEDGMSELDWEGNLLLTQKLGKKIQLIGDDLFTTNIERIRKGVEMKV DNAVLIKMNQIGTITETIETIEFTQNHGYLPVVSARSGETEDCTIVHLAIATNAGQLK VGSAARSERTAKWNEVLRIEEALGSSARYPSKGVFAAAGIQFNQY" gene 2236934..2237710 /locus_tag="Dhaf_2073" /db_xref="GeneID:7259042" CDS 2236934..2237710 /locus_tag="Dhaf_2073" /inference="protein motif:PFAM:PF03328" /note="PFAM: HpcH/HpaI aldolase; KEGG: amt:Amet_0505 2-dehydro-3-deoxyglucarate aldolase" /codon_start=1 /transl_table=11 /product="HpcH/HpaI aldolase" /protein_id="YP_002458546.1" /db_xref="GI:219668111" /db_xref="InterPro:IPR005000" /db_xref="GeneID:7259042" /translation="MFLKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAGLDYFIVDCEH AAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRE TVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVEDIDSIL AVQGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQGVVKGFFTAADAAK MGWAVERGAQMLLWSGDVAALQTYTAKGVKTIKELPGFNP" gene 2237748..2238257 /locus_tag="Dhaf_2074" /db_xref="GeneID:7259043" CDS 2237748..2238257 /locus_tag="Dhaf_2074" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mms:mma_0439 small permease component of tripartite tricarboxylate transporter" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458547.1" /db_xref="GI:219668112" /db_xref="GeneID:7259043" /translation="MAFIQQAEEKKGSRKNGEIITVIILALMALFIIYNSLQLEYSSN FGPGPGFMPFWIGMAMLLCCAIIAWNIYKKYFKLQAENDEKLFRASQMSRVFLMILLI IVVGILFPMVGAIPVMAVYMVYVLRFMGKHTWKKSILITIGFLAAVYLLFEKFLNVPL PLGIFSFLE" gene 2238273..2239766 /locus_tag="Dhaf_2075" /db_xref="GeneID:7259044" CDS 2238273..2239766 /locus_tag="Dhaf_2075" /inference="protein motif:PFAM:PF01970" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: bld:BLi01243 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF112 transmembrane" /protein_id="YP_002458548.1" /db_xref="GI:219668113" /db_xref="InterPro:IPR002823" /db_xref="GeneID:7259044" /translation="MENISNLLMGFQLALSFTNIMVCLLGIVVGVIIGALPGFGPAAG VAILLPMTFGMPPSTAMIMLCGIYFGAMFGGAISAILINTPGDSAAVMTSLDGYPLAQ QGKAGPALGMSTIASFIGGTVGVIALTLIAPIIAKFAVSFGPPEYFGLMVLGLTTLAG MTGKDATKGFMMALLGLFLSVIGADIMTGQQRFVFGIPSLWVGIDFIPVVMGLFGLSE VLINCEEDIKITMQKMKLTLRNILPSKQDMKDSVGALSRGSILGFFIGVLPGAGATIA SFISYSTAKKISKHPEKFGKGAIEGVAAPESANNAAASGAMVPLLTLGLPGSGTTAVM LGALLMLGLNPGPLLFRDNPEFVFTIIASLYFANIMLVILNLVGIPAFTSVLKVPYSI LMPCIVIFLILGVYSLEFTMINVWIMIFFGIVGYFMKKMDYPGAPLVLALVLGPITEQ SLRRSLALSHGDFGVFFTSPISCTLIIISILVVIWPLIKGRCIKKKA" gene 2239791..2240513 /locus_tag="Dhaf_2076" /db_xref="GeneID:7259045" CDS 2239791..2240513 /locus_tag="Dhaf_2076" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0081 ferredoxin hydrogenase" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458549.1" /db_xref="GI:219668114" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259045" /translation="MKIDVNKCIGCGLCAPYCPMGVLYKDGETMSIDHDECVECGICL NCAKCPKGAFYQDELSWPRILRAEFSNPLVPHASTGITGRGTEEMKSNDVTGRFKPGM FGLGIELGRPGIGTRLTEVEKVSMALAEYAEEFEPVNPVTQLMVDTQTGKFRDDALGE KVLSAIVEFTAPLEALPKVLERLRKLADEVDTVFSVSLISILDENGKSPVEDIAKQCG FPVADRTKINVGLGRIPAKGGN" gene 2240516..2241154 /locus_tag="Dhaf_2077" /db_xref="GeneID:7259046" CDS 2240516..2241154 /locus_tag="Dhaf_2077" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458550.1" /db_xref="GI:219668115" /db_xref="GeneID:7259046" /translation="MTHTLHRLGTEEERQQDFVVLIMPSKCINVEGSGPKVKIFLEKA SNVGAVNVGSLRLGHIYRHTLAELLEKIQDRNSTCTATFNSRESVAAFLKELKEADLG ISIVVCGVDGETRDICEEVGLKPHTVNHSLGVWGKTDKLPDGRHLMLSMMCGHGMVSF NLVKKAVEDVKKGKDPVKAAKFLAQPCHCALYNVPLAAKVLKELAEEELQNS" gene 2241191..2242216 /locus_tag="Dhaf_2078" /db_xref="GeneID:7259047" CDS 2241191..2242216 /locus_tag="Dhaf_2078" /inference="protein motif:PFAM:PF03401" /note="PFAM: conserved hypothetical protein; KEGG: dsh:Dshi_1220 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458551.1" /db_xref="GI:219668116" /db_xref="InterPro:IPR005064" /db_xref="GeneID:7259047" /translation="MKKSKKAISVFLCLVLVMVALAGCGNSSAPAASDPAKETEGWVP TKNVTIVVQAGAGGGSDIFARKFAEIATAKGLSPKPIVVENRPGGGGAVAYNYVGKQQ HGDPHYLTIVVTPFLTTPLQGMAEVDYTKFEAIARMGVDNSNGLLVPAKSQFNTIEEF IDYAKANPLKLNLGGGNIGSADSIMTQVLEEGTGIKLNYVAFGGGGETVTAALGGHVD AIWGNLAETKDYVDNGDLKLLATISSERLSLTPDTPTFIEKGYPEVDYPMFRGFAAPG GIPEEAIAYWEDVCKQVYDSPEWQEGYLKANVISPGFMGRAEFSQELEAQNEFHAKVL KALGLIK" sig_peptide 2241191..2241292 /locus_tag="Dhaf_2078" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.503 at residue 34" gene 2242336..2243295 /locus_tag="Dhaf_2079" /db_xref="GeneID:7259048" CDS 2242336..2243295 /locus_tag="Dhaf_2079" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: amt:Amet_2953 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /protein_id="YP_002458552.1" /db_xref="GI:219668117" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:7259048" /translation="MNIVVLDGYTLNPGDLSWQELERLGDLTVYDRTPEELIYERAKD AEVLLTNKTPLRENVLTKLEKLKYISVTATGYDIVDIKYAYDNNILVTNIPTYGTASV AQAVFALLLEMCNNVQKHNDLVKGGAWSESLDWCFWKYPLMELANKKMGIIGFGRIGQ QTAKVANALGMEVLAYDRFKLENLPIDFKYVELDQLFAQADVISLHCPLTPENAGIIN KDTIAQMKRNVILINTSRGKLVVEDDLYEALSTGRIAGACLDVLAVEPPSRDNPLLKA KNCIITPHISWATKEARARIMALTIENLKAYLDNKPINRIKLS" gene 2243362..2244411 /locus_tag="Dhaf_2080" /db_xref="GeneID:7259049" CDS 2243362..2244411 /locus_tag="Dhaf_2080" /inference="protein motif:TFAM:TIGR03082" /note="TIGRFAM: membrane protein AbrB duplication; KEGG: amt:Amet_2937 putative ammonia monooxygenase" /codon_start=1 /transl_table=11 /product="membrane protein AbrB duplication" /protein_id="YP_002458553.1" /db_xref="GI:219668118" /db_xref="InterPro:IPR017516" /db_xref="GeneID:7259049" /translation="MFFLSKMGLMVGLAVAGYGLFKKINFPAPSIMGPMMSLGTYQVL GGGLPEFSLTVVNILQITIGLSLGARINDQKLADLRKVLRPSLIIAAWTLLSTFGMAL VIYQFIPDGTTALFAAAPGGISEMTVLALVYGSEVPIVSTYQFVRLVVIITVVPLSAR WLHRRQQKKGMAADEKPDPPEQPQCSLKTRQILPLYLNGILGGLLLLTLNFPGGGVVG AMAALAITNVLLKKQYIFPNSVMQMALIGIGMSIGLEFSPEIIRTIQEMLLPIIGFSF LIVLSNLAVGWYIRHLTHWDMITCLLASAPGGLSQMLAAAEEMKADPVTVSILQLVRL LIIITCIPLLAPFFV" gene complement(2244374..2245102) /locus_tag="Dhaf_2081" /db_xref="GeneID:7259050" CDS complement(2244374..2245102) /locus_tag="Dhaf_2081" /inference="protein motif:PFAM:PF08242" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1176 UbiE/COQ5 methyltransferase" /codon_start=1 /transl_table=11 /product="Methyltransferase type 12" /protein_id="YP_002458554.1" /db_xref="GI:219668119" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7259050" /translation="MNEALFDPVAAHYDSWYDTELGSLSDQVERRLAQSMFKAPGPQV LEIGCGTGQYTSWLLQEGYEVTAVDISGKMMALAQKKIATLQETTPQAKPVHWWHGDI TEILDQLGTYDGIFSMTAFEFVPEPETVLKKLFSRLNPGGCLLIGLIAGESAWSDYYE EAARRKPASVFARAALYTKEEIASWQLGVPAEIGECLFFPPHILTEAEALALEEERAG NPGFVVARWVKGFKQKRGPAAGCR" gene 2245485..2247191 /locus_tag="Dhaf_2082" /db_xref="GeneID:7259051" CDS 2245485..2247191 /locus_tag="Dhaf_2082" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3045 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458555.1" /db_xref="GI:219668120" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7259051" /translation="MQMLRNLTTAKKIISIILLMSLFILSVGGVGYSYTHVVSSEITD MYSNNLLPVKWLNQVRADNRLVEELSMKIMLTDQDQATEDEELKTINETIAEIQTLIS QYKGTALDSFESEKLASITKNLDAYGTVHEKVLNLAASGEKTTAYAQFTENAAPLMMD INSALNELADYKSQKADQEMNNALAGRDMAKKMILIITLIAIVVSLTVGLMAARTISK PLAAAVKQIGQVAEGNLDIEQVKVNAADEVGQLGIAVNTMLVKMRELVTHVADSANIV SSSAEELSASSEQSAYANNQIADAIKDVAWGAEKQVAQINETSRVFEQISAHIQQIAV NTNQVVTLSDKTDESASYGGTAISSAVSQMRNIEKTVETSAEMVAKLGEKSDEIDQIV TAISQIAAQTNLLALNAAIEAARAGESGRGFAVVADEVRKLAEQSQKASKQIAEMIRE VQEGTKKAMAAMKAGSHEVKIGTEVVNNAGVAFADIVTLINQVSGKMREIALAIQHVA DGSQQIAASVHEISEISVDTAEHVSYRLSGNSGTDCFGGTNSRFKPKSFQHGSGVAGK YT" sig_peptide 2245485..2245592 /locus_tag="Dhaf_2082" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.564 at residue 36" gene 2247311..2247634 /locus_tag="Dhaf_2083" /db_xref="GeneID:7259052" CDS 2247311..2247634 /locus_tag="Dhaf_2083" /inference="protein motif:PFAM:PF00893" /note="PFAM: small multidrug resistance protein; KEGG: bat:BAS3107 SMR family multidrug efflux pump" /codon_start=1 /transl_table=11 /product="small multidrug resistance protein" /protein_id="YP_002458556.1" /db_xref="GI:219668121" /db_xref="InterPro:IPR000390" /db_xref="GeneID:7259052" /translation="MQWIYLALAILLEILGTTLMKMSEGLTKMLPTLGMFLAYVLCFS SFALALKKIPVSVAYAVWSGVGIVVISAIGIAVFKETVTTLKVVSIVLIVAGVVGLNL GGTAH" gene 2247652..2248143 /locus_tag="Dhaf_2084" /db_xref="GeneID:7259053" CDS 2247652..2248143 /locus_tag="Dhaf_2084" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: amu:Amuc_1316 transcriptional regulator, MarR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458557.1" /db_xref="GI:219668122" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7259053" /translation="MKETIDKETIAVDDKMLEQIDAYYDFWFQINDIYRIWAQKHNTN ETTVFILQVIDTGAPFCTQNEIGSKLFLPKQTVSIVLSGLEKKGYIVREPNPSDRRNK IVKFTEQGARYARGLLDELKAMELEAFASIAPEKRLAISETFALLAGSLSKASHKTSC PPR" gene 2248379..2249443 /locus_tag="Dhaf_2085" /db_xref="GeneID:7259054" CDS 2248379..2249443 /locus_tag="Dhaf_2085" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: aoe:Clos_2431 periplasmic binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002458558.1" /db_xref="GI:219668123" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7259054" /translation="MMKLKKLMGSILVIALSLSITACSTSGLSGQDNLPGGEGVSAGT GSEQGEVTYPLRIKHAFGVTVIESKPERVATISWGNQDIPLALGVIPVGVSKANYGVT DDSGLLPWTLEGFKKLGVENPVLFNDTDGLDFEAISDVQPDVILAAYSGITQEEYDLL NQIAPVVAYPTVAWQTYWRDQIVMDATGMGMEAEGEELVSELEKLITKKIAAYPQMTG KNAAFFYFIPTDLGKFYVYLPTDPRAAYLTDLGLKVPESVAELAKDSASFAIELSAEN VDILKDVDIIIAYGDEALLKSLQADPLMGTLPAIQRGSVAMIEDGTPLAASGTPSALS IPATIDDYLSIIGKAADWVR" sig_peptide 2248379..2248471 /locus_tag="Dhaf_2085" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.425 at residue 31" gene 2249440..2250438 /locus_tag="Dhaf_2086" /db_xref="GeneID:7259055" CDS 2249440..2250438 /locus_tag="Dhaf_2086" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: aoe:Clos_2430 transport system permease protein" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002458559.1" /db_xref="GI:219668124" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7259055" /translation="MKLRKTMILAIAGVLGVVLCIGASLALGSRNVGLDEVIKALFYS GSDSFDALVVRERIPRTVFSLLAGASLGVAGALMQAITRNPIADPSILGVNTGASLFV VSGIAFFQISTAGQYIGFALMGALVTAVFVYRIGSLGYGGATPIKLALAGAATSAALS SLVSAVILPRTEVMNAFRFWQVGSVSGATWEGILAVAPFLALGLSIGMLTAPALDALA LGDDVATGLGVNTGMIRIAGAVAGVLLCGATTALAGPIAFVGLMIPHTMRLICGPDMK VIIPMSALGGAMLLTISDIIGRLMGQPSELEAGIVTAFLGAPILIMIAMRTKVRSL" sig_peptide 2249440..2249520 /locus_tag="Dhaf_2086" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.656 at residue 27" gene 2250435..2251484 /locus_tag="Dhaf_2087" /db_xref="GeneID:7259056" CDS 2250435..2251484 /locus_tag="Dhaf_2087" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: aoe:Clos_2429 transport system permease protein" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002458560.1" /db_xref="GI:219668125" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7259056" /translation="MIKHELSIKQPNPVQEGFYRRRVRIAVVTLLLLILTLFLCGTML YLGNTRYSLGEIIRVLLGEQIKGATFAIGTLRLPRMLAGLLAGMAFGMAGRTFQTMLR NPLASPDIIGVASGSSLAAVFCIIILKISGPLVSLAAVTTGLAVAFLIYMLSRRGSFS GGRLILIGIGVQAMLNSLISFLLLRANQYDVPAALRWLSGSLNGMQMKSMPGLFLVVL SFGSVLVLLSRQLKILELGDQSAITLGLRTDRIRLALVLSAVFLIAYATAVTGPIAFV AFLAGPIAGRLAGPGSSNILPAGLTGAVLVLLADSIGQFVFDIRFPVGIITGILGAPY LLYLLIRMNRTGGAA" gene 2251481..2252284 /locus_tag="Dhaf_2088" /db_xref="GeneID:7259057" CDS 2251481..2252284 /locus_tag="Dhaf_2088" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aoe:Clos_2428 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458561.1" /db_xref="GI:219668126" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259057" /translation="MKKTPLLSASHVVAGYDHKIILNTIDLVIPSNKISVIIGANACG KSTLLKTLARLIKPVSGEVALDGKPISTIPPKQLARVLGLLPQSPVVPEGIAVADLVS RGRFPYQGFLKGLGKKDYEAVEEALEIMGITELANRSVDELSGGQRQRVWIAMALAQQ TDILLLDEPTTFLDITYQVEILDLLTDLNRKRGTTIVMVLHDINLSARYADYIFAVHQ GNLIAQGAPGEIITADLMKQVFGLDCVVARDPVSGSPFIVPRGRYHITA" gene complement(2252385..2252582) /locus_tag="Dhaf_2089" /db_xref="GeneID:7259058" CDS complement(2252385..2252582) /locus_tag="Dhaf_2089" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458562.1" /db_xref="GI:219668127" /db_xref="GeneID:7259058" /translation="MESFEYKTLFTDAKGILGGKVDQNAFQNELNQLGLQGWELVSTV AAAQSYGSTRWIISTFKRRIR" gene complement(2252587..2252766) /locus_tag="Dhaf_2090" /pseudo /db_xref="GeneID:7259059" gene 2253019..2253906 /locus_tag="Dhaf_2091" /db_xref="GeneID:7259060" CDS 2253019..2253906 /locus_tag="Dhaf_2091" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbl:CLK_3515 radical SAM domain-containing protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002458563.1" /db_xref="GI:219668128" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7259060" /translation="MEFIPAKTILSGYAENNPWFGCNYTMNIYKGCCHGCIYCDSRSE CYRVDDFDEVRAKENALALIERELMSKRKKGVVGTGAMSDPYNPFEKKHELTKGALEL IHRYGFGAAIATKSDLIVRDRELLKEIGKHSPVLVKMTVTTADDLLCRKIEPHAALSS RRLEAIEKLTQEGIFAGILLMPVLPFIEDTEENISRIIDLAHQKGAKFIYPAFGVTLR QNQRAWYYEKLDELFPSLKEKYIENYGNAYECRSLKARELWRLFQDKCDQYGILYNMP DIIAGYKGPCRLEQLSLFE" gene complement(2253911..2254438) /locus_tag="Dhaf_2092" /db_xref="GeneID:7259061" CDS complement(2253911..2254438) /locus_tag="Dhaf_2092" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3606 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458564.1" /db_xref="GI:219668129" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259061" /translation="MHIIIEKGLKTDIEELALLYDELNDYLASGENYPGWRKGIYPTR ENAIEGIANGHLYVARASGKIAGSIILNHEPVPAYHGANWGIDADYSEIFVVHTFAVH PAYLKKGIGSNLIEFAVQHSINEHIKSIRLDVYEHNLPAIRLYEKSGFTYVGTVDLGL GHYGLDYFRLYEKVL" gene complement(2254513..2255250) /locus_tag="Dhaf_2093" /db_xref="GeneID:7259062" CDS complement(2254513..2255250) /locus_tag="Dhaf_2093" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpy:Cphy_1991 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458565.1" /db_xref="GI:219668130" /db_xref="GeneID:7259062" /translation="MVSLKSFFQKYLFAITVFIGWIITVYSLYFIKYKMFGGAIEVLL LYVIIFPPIIAITDFLAKPKENENKTKKKIGLVLDVIAVCILTWAFFISPYAVGLYAI STIALILILLSRFPRLQAKLKNKANQKERSVFVLSIFAILIIVPLVFTSAAGIKTIRN TQILLENTHYTDTAYVDIINNKAALAIVFEGKTTVTDGTQDDLGFYLFKASKDNKEYA IAVNILGGDIVGEVLLEGNPYIHYYLR" gene 2255454..2255861 /locus_tag="Dhaf_2094" /db_xref="GeneID:7259063" CDS 2255454..2255861 /locus_tag="Dhaf_2094" /inference="protein motif:PFAM:PF03681" /note="PFAM: protein of unknown function UPF0150; KEGG: csc:Csac_0081 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0150" /protein_id="YP_002458566.1" /db_xref="GI:219668131" /db_xref="InterPro:IPR005357" /db_xref="GeneID:7259063" /translation="MITHYLFPAIVEHNTLSGRYIVVFPDLPDLICQGETPEDAFHQA ELSLGMHLYHMEKAKKQIPEASDSANWPKREGAEIIMLEADTLMVRQDVDKKSVPKCI MIPRWLKELGEENDVNFLEILRVGIMDELGIPD" gene complement(2256017..2257357) /locus_tag="Dhaf_2095" /db_xref="GeneID:7259064" CDS complement(2256017..2257357) /locus_tag="Dhaf_2095" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: swo:Swol_0570 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458567.1" /db_xref="GI:219668132" /db_xref="GeneID:7259064" /translation="MIDFKLPKKLIVFSMTLILVSGCADISISTLPIPSTGTPLARQD GAQDKPLLTWEAVKELTAGSLSYSEIRNSFYFQDIGSGLYVISFPIKEGPEFSLSASS TGRAPQEILRDYHTMLLRDGWEPADTLGLKQFYKKTIDGNELLISVAYIPENGSQDTE NLTVIRFNIEPLPTAPNRLIHDEQDVQELVEAFGKRIQAVSITAPPSTAAAGITEHYS DYVTPELLQQWQTAPQTAPGRLVSSPWPDRIDILATEMYKPDQCTVRGEIIEVTSVEM AQGGAAAKRPVEIALRQIKGRWFISGVRMGEYIQTGPVVYENTRYGFAFHLPETWKGY SIIAEQWQGTQNDETTETGPLLLIRHPEWTRELPRQDIPLMVFTPEQWQALREEGLSV GAAPIGPRKLGGNSRYIFAIPARYNYAFPAGYEEVEDILQSSPLWPLRQSAFPQ" sig_peptide complement(2256017..2256091) /locus_tag="Dhaf_2095" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.643) with cleavage site probability 0.593 at residue 25" gene complement(2257494..2259686) /locus_tag="Dhaf_2096" /db_xref="GeneID:7259065" CDS complement(2257494..2259686) /locus_tag="Dhaf_2096" /inference="protein motif:TFAM:TIGR00198" /note="TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: gsu:GSU2100 catalase/peroxidase" /codon_start=1 /transl_table=11 /product="catalase/peroxidase HPI" /protein_id="YP_002458568.1" /db_xref="GI:219668133" /db_xref="InterPro:IPR000763" /db_xref="InterPro:IPR002016" /db_xref="GeneID:7259065" /translation="MEEKKCPVTGHTQHTPTGGGTKNKDWWPNQLNLNILHQNSALGN PMDPDFNYAEEFQKLDLAAVKKDLSALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYR LNDGRGGAGDGTQRFAPLNSWPDNVNLDKARRLLWPIKQKYGKKISWADLMVLAGNCA LESMGFKTFGFAGGREDVWEPQEDIYWGSEGEWLGDQRYSGDRDLENPLAAVQMGLIY VNPEGPNGQPSVLASGRDVRDTFKRMAMNDEETVALVAGGHTFGKCHGAGPASHVGPE PEAAPLEEQGLGWKSTFRSGKGGDTIGSGIEGAWKPNPTTWDMGYLETLFKYDWDLVK SPAGAWQWVPTDPAAADTVQDAHDPAKRHAPMMTTADLSLRMDPIFGPIAKRFRDNPE EFADAFARAWFKLTHRDMGPRSRYLGPEVPEEELIWQDPVPPVDHELIDEQDIADLKA KLLASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEINQPAQLAEVLA ALEGIQTEFNSSQSGTKKVSLADLIVLGGAAAIEQAARNAGQTLVVPFTPGRTDATQE QTEIYSFAVMEPKADGFRNYLKGKSSAPAEEMLVDRAQLLTLTAPEMTVLLGGLRVLN ANYGQSKHGVFTQRPETLTNDFFVNLLDMGTEWKAVSEEKALYEGRDRATGELKWTGT RVDLVFGSNSQLRALAEVYACSDSQDKFLQDFVSAWNKVMNADRFDLA" gene 2260077..2261162 /locus_tag="Dhaf_2097" /db_xref="GeneID:7259066" CDS 2260077..2261162 /locus_tag="Dhaf_2097" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3749 transcriptional regulator, XRE family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458569.1" /db_xref="GI:219668134" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7259066" /translation="MELDMGKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYP DITLLPPIARALNTTVDELFSYQNELSDNEVSGFTQKATSLYEAEGFDAGWKYCQKLL QEFPNSIPLKFYLGNLFQSFMIMKIDLGKEDIQSYYRQAAILYEEVLLSGYPKFTYHA TLILVGFYTMLNELDRAEELLDSLPKLKTDPDFLYPSIYALRGKNEEAMKLTQENIRR YVSRVSQGLSLLGAFAREQEDMDKACTLTQINLEITKLLGISREIAYADMIKIMVARG DKEAALTYLEEYTQHILELSYDYVKSPVFNRVTEKFQDPSYVKKVLTQSILIDKEYTP LKEEPRYLQIVHRLRQVIDTQTHTFRE" gene 2261283..2261645 /locus_tag="Dhaf_2098" /db_xref="GeneID:7259067" CDS 2261283..2261645 /locus_tag="Dhaf_2098" /inference="protein motif:PFAM:PF03965" /note="PFAM: Penicillinase repressor; KEGG: cth:Cthe_3145 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="YP_002458570.1" /db_xref="GI:219668135" /db_xref="InterPro:IPR005650" /db_xref="GeneID:7259067" /translation="MKEDKLSQSEGRFAELIWQHEPIPSGELVKLCEKELNWKKSTTY TVLKNLCEKGIFQNQQAVVTALIKKDAFYAKQSRRFVEDVFGGSLPRFLTAFIGGRKL RDDQVDELKRLIDEHKEE" gene 2261648..2263492 /locus_tag="Dhaf_2099" /db_xref="GeneID:7259068" CDS 2261648..2263492 /locus_tag="Dhaf_2099" /inference="protein motif:PFAM:PF05569" /note="PFAM: peptidase M56 BlaR1; KEGG: cth:Cthe_3127 peptidase M56, BlaR1" /codon_start=1 /transl_table=11 /product="peptidase M56 BlaR1" /protein_id="YP_002458571.1" /db_xref="GI:219668136" /db_xref="InterPro:IPR008756" /db_xref="GeneID:7259068" /translation="MEELFLTVLNMSLTGSYVIAAIMLARLFLKKAPKAVSYALWGTA GFRLIFPFSFESVFSLIPFKAQPIPQTAPLGENVSLGSAVGAALRAAGDAANGGLGTV TVYLGRTADGYPITTQAYHSEVWLMFGSYLWLIGMAALLLYSIVSIVLLKRRLQGAVF SRGNIYEADNLRTPFVLGVFRPKIYIPIGLREEERRYILLHEQTHIQRFDHLVKPFAF LILALHWFNPLVWVAFLLMSGDMELSCDEKVLKTMDQEMKKPYAQSLLSLAADRRFIN GSPLAFGEGNVKARIKNVLNYKKPSTWVVTVTTVLVAALSIGLAANQVNSGTGDYDFY NFSVNGFMLGADTQEMDTSAFTPIEPLQVKDGYDFNFEEARYSADENTGRLIKLFVNV YDGADIPHKLKSIEQVMEVFGQGKRGWQDREQGLRYLEYRQKEGRLSATVRFVYTDGD SDGINHRLIWVMAESSLPYPYPWEEAHASDVPSDEPLTFLSAEPLNFSSSVETDLLAL GQAAFETYMALRMSEKTPVEERIASYQLNDLSILAGDSQEFAVAVHYDFTTDHDDYFN PAEGAQGKGTWPDNYRELRVQYAYEDIYAIIGIGTGGGGQGLPPYPAE" gene complement(2263509..2264363) /locus_tag="Dhaf_2100" /db_xref="GeneID:7259069" CDS complement(2263509..2264363) /locus_tag="Dhaf_2100" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: cpy:Cphy_0276 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002458572.1" /db_xref="GI:219668137" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7259069" /translation="MRTVKQVSALTGVSVRTLQFYDEIDLFKPTQVNDAGYRLYDDAS LELLQQILFFKELDFTLREIKAIMANPHFDKVEAFKKQKTLIQLKRDRLNRLLSLLAK LEKGEKIMSFNEFDMSGYFQALEEFKKTHADEILKKFGDIDAFDEMVGELKAKASDIA ELAVKQYGSIENYTRASEKNLENYLKNGTETIDVEESMAKTDSLTRQLTADLSKDVSS QEIQTMILELIDLCNQGHNGLDMGENYWAFMAENYLTNPLFISTTDQKYGEGAAEFIG KALKIHLG" gene complement(2264612..2265373) /locus_tag="Dhaf_2101" /db_xref="GeneID:7259070" CDS complement(2264612..2265373) /locus_tag="Dhaf_2101" /inference="protein motif:PFAM:PF00106" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cth:Cthe_1433 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_002458573.1" /db_xref="GI:219668138" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR002424" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7259070" /translation="MFNLQGRVAVITGASSGLGTQMAHGLAEQGADVVLLARREERLR KVAEDIESQYGVQAYPFPCDVTQLASVQAAVQAARERFGKVDILINNAGIGSVAPAET MDDEVWEHNLSVDLTGVFRIAREFGKVMLEAGYGRIINISSMYGMVGNSATPASAYHA AKGGVVNLTRALAAEWADRGVTVNCLCPGYFETELTVDLLKTEEFKAYMERTVPLKRY GNSGELNSAACFLAADESSYVTGAILPIDGGYTCV" sig_peptide complement(2264612..2264683) /locus_tag="Dhaf_2101" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.852) with cleavage site probability 0.432 at residue 24" gene 2265590..2266243 /locus_tag="Dhaf_2102" /db_xref="GeneID:7259071" CDS 2265590..2266243 /locus_tag="Dhaf_2102" /inference="protein motif:PFAM:PF02805" /note="PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; KEGG: cbb:CLD_0121 methylphosphotriester-DNA alkyltransferase" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458574.1" /db_xref="GI:219668139" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR004026" /db_xref="GeneID:7259071" /translation="MTLSTEEKWQAVLACDPAYDGQFFYGVQTTGIFCRPSCKSKNPK RENVVFFDNAAQARAWGLRPCKRCRPDLAEFQPQKELAEKIKGIYDLYFADHSRLREE LKKLGVGRNRTGQVFYAHYGKIPAEYLNTLRIESAQKLLTHTQESTLQIALQSGFESL STFYTHFRRLTGVSPKEYRCSALGKEEAGEGRCGLPKGTHNCSSLNDVRKAAGPKQI" gene 2266259..2266777 /locus_tag="Dhaf_2103" /db_xref="GeneID:7259072" CDS 2266259..2266777 /locus_tag="Dhaf_2103" /inference="protein motif:TFAM:TIGR00589" /note="TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pca:Pcar_3000 methylated DNA-protein cysteine methyltransferase" /codon_start=1 /transl_table=11 /product="methylated-DNA/protein-cysteine methyltransferase" /protein_id="YP_002458575.1" /db_xref="GI:219668140" /db_xref="InterPro:IPR001497" /db_xref="InterPro:IPR014048" /db_xref="GeneID:7259072" /translation="MIYTCTLSTPLGDITAAAEGEALTGLWFIGQKYYPAQTEAWVTE PEQRVFKSLQTWLDHYFSEREGSAPFPELAPKGTDFQKAVWEILLEIPRGRVTTYGEI ARKLAASRGLSSMSAQAVGGAVGHNPISILIPCHRVVGAGGSLTGYAGGLEKKQALLR LEQADLNCRKLF" gene 2266906..2269062 /locus_tag="Dhaf_2104" /db_xref="GeneID:7259073" CDS 2266906..2269062 /locus_tag="Dhaf_2104" /EC_number="2.7.1.69" /inference="protein motif:TFAM:TIGR00410" /note="KEGG: cdf:CD3650 putative signaling protein; TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: EAL domain protein; phosphotransferase system EIIC" /codon_start=1 /transl_table=11 /product="PTS system, lactose/cellobiose family IIC subunit" /protein_id="YP_002458576.1" /db_xref="GI:219668141" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003352" /db_xref="InterPro:IPR004501" /db_xref="GeneID:7259073" /translation="MHKRLFSNVAEMSGDYTKLMEKAGENLLLASIRRGLILMIPVVL IGSLALLFSSFPVPQYQELMARLFGQNWQDFFIYVHDGTIGILSLAMVTCITYSLATE LENRDKLRINPVIVSTVALCSFVALFGINKDGFKITNYGVTGVFVSILVAVAASLLFY KLSSIKLLRIRPFSDGDSITFSHAVASIIPAAITITLFAAVNQILAALLNITDINDFL ADVLYHLFANINNSFLRALLFIFLIHFLWFFGIHGSNMLEHVAQSIYVPALAINQELI QAGGEPTQIFTKTFFDTFVLMGGCGSTLCLLVAVFMLKKNKNQRRIAKFSLFPLLFNI NELIVFGFPLVLNPIYLIPFLLVPLLLTVTSYAAVSLGLVPFTIQTVEWTTPVFISGY YATGFWSGCLLQLFNLILGTLCYIPFVKLSQTVSVSRLKKNFETLCAEFKKSERSNKR HSLLERQDMLGSLAKALAEDLKYDIETKKLTLFYQPQVDYEGKVFCAEALLRWNHVHY GTIYPPLVIALAEEYQLIDELGLEIIDQACSTIKIMAALGFTEMAVSVNITASQLENQ DFPGKLRQLIEKHQISPKALKIEITEQVALENNKWIKDTLNALKEMGIELEMDDFGMG HSSLMYLKEYNFDTVKLDGSLVREISTNMNCRDIISSIIYLSRSMNYAVLAEFVETEE QRQILHELGCDLYQGYLYSPAIPLADLLVYIRRSQG" gene complement(2269113..2270606) /locus_tag="Dhaf_2105" /db_xref="GeneID:7259074" CDS complement(2269113..2270606) /locus_tag="Dhaf_2105" /inference="protein motif:PFAM:PF02541" /note="PFAM: Ppx/GppA phosphatase; KEGG: cac:CAC0621 exopolyphosphatase" /codon_start=1 /transl_table=11 /product="Ppx/GppA phosphatase" /protein_id="YP_002458577.1" /db_xref="GI:219668142" /db_xref="InterPro:IPR003695" /db_xref="GeneID:7259074" /translation="MRILGIIDIGSNSMRLVIVQLTDDNSYRIIDDVKHSVRLGKDIL PNGNLHPIRMQRAIETLQFYKTLCDAIQTDQIIVVATEAIRKAANQKEFLELVYSLTG LAVRVLEGEEEAYYDYFSVANVFAMSENLIMDIGGASTELIWMKDRKVRNMASLPFGT ISISEQLNQAAGNIYEKEKTVTNSLIHTFHQLGWLPHGKTLIGIGGSFRNIAKIDKKR CAYPLELSHNYYLPGERLQDIHQLIMTTPAGRRKDIRGLSSERADIIWGATTAINALL MYCGISDIYISGYGLREGIIYEEILHDLNPVEDVLDYSINNLMSNISLNKKHAFHVWQ LSRSLFEQLGSVHELNTSTVNVLKTAALLHDSGISISYYDHHLHSFYIILNSQINGLS QQELLMAAYTAASHRKNKVKVDPAHKGLLREQEINTIRKLGVILRIAESLDRRMNDNI NAVDCLIEQEVVTLKLTSKSTHELEAKETMEISAAFLKEFGRRLHII" gene 2270845..2272377 /locus_tag="Dhaf_2106" /db_xref="GeneID:7259075" CDS 2270845..2272377 /locus_tag="Dhaf_2106" /inference="protein motif:PFAM:PF02541" /note="PFAM: Ppx/GppA phosphatase; KEGG: ckl:CKL_2253 Ppx1" /codon_start=1 /transl_table=11 /product="Ppx/GppA phosphatase" /protein_id="YP_002458578.1" /db_xref="GI:219668143" /db_xref="InterPro:IPR003695" /db_xref="GeneID:7259075" /translation="MELKLPLIAAIDVGSNYIQMIIAELNPEGQVKILEDVIQPTSIG RDTFTMGRIDRKTIQETCEILKGFSQLLKDYRVKDYHAVGTSGIREAENREYVLELIR LKTKIEVEIINSAQERFFMYRALRSRLPGPLLAEQTTLIVNLASGGVETSIYEKGALI FTEYLKIGSLRLRETLADLEVKSINFPAVMEEFIDSKTSLLKRFLQDIKFTNFIMIGN EVRTVANLCGEDQRIEVEDFTKLYEKLLIMTDDQITRTYGLVKNQADTFLPTVITLHC FLKLTHARQIYVPDISLKNGLIHDLADGLIESPQSKDSLNDMISSVWYIANRFGADRR HAEQVEKLALSLFDQTGKIHGLGHQERLYLQVAAILHAVGYFISFTDHQEHAYRIIRH RNIMGLSARDLILIANIVRYNTQESPSHQDENYEGLMDRDKIVVSKLAALLKLAEALD VSHKNKVEKVEVHRKGEQLIFTMYSWQDPFLEEWTFQNCSSLFEEVTGMQVIVKRKGL SL" gene 2272374..2274521 /locus_tag="Dhaf_2107" /db_xref="GeneID:7259076" CDS 2272374..2274521 /locus_tag="Dhaf_2107" /EC_number="2.7.4.1" /inference="protein motif:PRIAM:2.7.4.1" /note="catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate" /codon_start=1 /transl_table=11 /product="polyphosphate kinase" /protein_id="YP_002458579.1" /db_xref="GI:219668144" /db_xref="InterPro:IPR003414" /db_xref="GeneID:7259076" /translation="MMKTIYDTTGNFINRELSWLEFNQRVLEGALDAANPLFERLNFL AIVSSNLDEFFAVRVASLGDQILAGLEKRDPSGLLPQECMAQIVERAHGIVEGQYRCY RNSLLKKLRKENINIVNPKSLTKDQKKFVKDYYLHKVFPVLTPLVVDQGRPFPLLRSR ELYIALLIKGVETHLFATVQVPKVLPRFVEVPSATKDREFIMLEDLITLKLPDLFQGH KLAAAGFFRITRNADLDFDEEGAEDLLEAIELSIRQRKWGSVIRLEVGKGFHKDLLAI LKEELEITEDKIYEVRGPIDLTFLSDFIKLKGCEHLRYLPFQPQDVPELIREKDIFKA IQEQDILLHHPYQSFQPVVELVKTAARDPQVLAIKQTLYRVSGNSPIIAALAQAAELG KQVTVLVELKARFDEEKNIHWAKHLEEAGCHVIYGLVGLKTHCKVLLIVRREEDGIKR YVHMSTGNYNDVTAKIYTDIGLMTVNPQFGADASALFNMLSGLSQPVNLNKFTLAPAG MREKFLQLIEDEAHNAQKGMKAVIVVKVNSLLDKQIILALYHASSQGVEIKLIVRGVC CLRPGLPGVSETIAVRSIVGRFLEHSRIFYFYHGGEELVYLSSADWMPRNLDRRVELL FPVENPDAKEEVKAILDIAWQDTVKARILNAKGIYKKVDKRRKKSVESQDALCERAVA QSTREKARLQERLEGSFHPVTAGAEMQGFTGMK" gene 2274558..2275028 /locus_tag="Dhaf_2108" /db_xref="GeneID:7259077" CDS 2274558..2275028 /locus_tag="Dhaf_2108" /inference="protein motif:TFAM:TIGR00249" /note="TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: afe:Lferr_1955 phosphohistidine phosphatase, SixA" /codon_start=1 /transl_table=11 /product="phosphohistidine phosphatase, SixA" /protein_id="YP_002458580.1" /db_xref="GI:219668145" /db_xref="InterPro:IPR001345" /db_xref="InterPro:IPR004449" /db_xref="InterPro:IPR013078" /db_xref="GeneID:7259077" /translation="MELILMRHGQAEENMENDAERTLTKEGQKKIKRVAFGIDHLLDV KQKICIWTSPLERAWQTAQIIAKKLNVAEVEKVEMLATGGDLMALLEEWLPQKQADCL IIVGHQPYLSDWSVKLAATPLPFKKGAIAGYKLNEESPLTAQLRWFVQPGVWSK" gene complement(2275103..2275942) /locus_tag="Dhaf_2109" /db_xref="GeneID:7259078" CDS complement(2275103..2275942) /locus_tag="Dhaf_2109" /inference="protein motif:TFAM:TIGR01856" /note="TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: amt:Amet_3545 HisJ family histidinol phosphate phosphatase" /codon_start=1 /transl_table=11 /product="histidinol phosphate phosphatase HisJ family" /protein_id="YP_002458581.1" /db_xref="GI:219668146" /db_xref="InterPro:IPR004013" /db_xref="InterPro:IPR010140" /db_xref="GeneID:7259078" /translation="MVLLDYHMHSLNSTDAHDEISALCAKAIARGLQEIAVTDHFEPS AGHEEYSEYDGRKYFTEIAEARRRFAGKLSIKSGVELGQPHLFPKYSLQLLEEYPYDY VLGSAHRMPNNVDFGEVRYTPENLAAYCASYLTELKALAQWGHYDCLGHLDLVKRYAA KYRLRANLMDYQEQLAEILRIVIDKGKGIEVNTSGLRQSSQECLPDLDIIRLYKELGG EIITVGSDAHWAEDVGKGIQEGLERLKKAGFKYVSVYTNRQPAMIKIGDKSALFTRGG LSA" gene complement(2276082..2277677) /locus_tag="Dhaf_2110" /db_xref="GeneID:7259079" CDS complement(2276082..2277677) /locus_tag="Dhaf_2110" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hau:Haur_0517 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458582.1" /db_xref="GI:219668147" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7259079" /translation="MNTSIDFAHCLKYLLSALGVSINRLSKALNVDGSLVNRWVNGKR IPSYDSNYIEAITQFLSANIKNSLQIQLINELFERVFGVDAETDCIEIKIKKVLFEAQ GISLSNHKLHTKEAKKLLKYKKSMANPPFFNEVGSMSHDDKIISGTPNVAAAFRHLLG LALQTHKRRKAIYITYFNDVFFYMSGEDERRQFQTMLVDLMAQGCEIHYLLRITHDLQ RMMDLLNFFKPLLGTNQLYLYYLKSYDSLTLGKDYFIVPETGVLSCFVAQADKSCALY LRNPLAISFYEEYWLGLTQSSATPLLIHYPADKEESFRNSLLESEAAIGNRFLFKNSF SIFTLPLQLYKKLLLKRNLSSQEMASALAFHQKCLEAFQTNIKIYEYKDIYTMDSLHY LVKNRQFYLWDPAGLYAVDLEREELVDFLQHLITLLKTYDHYSMAFVRKNTHLPGLGK NVSCVLKARHALIVEILGPAGTEPVRFSINEPMVLNSAEASFQKLWQQIAPVMKKKAE VIAWLQQESDLLKSAFYPNPDSQ" gene 2277926..2278531 /locus_tag="Dhaf_2111" /db_xref="GeneID:7259080" CDS 2277926..2278531 /locus_tag="Dhaf_2111" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: cbo:CBO1524 signaling protein" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002458583.1" /db_xref="GI:219668148" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR013976" /db_xref="GeneID:7259080" /translation="MEEETVITTVNTSSNKDKTSPDSKGCALEKLNLKLSASVIAQHG YRVSRLCERMGRQLGLREMALTELSMAGLFHDLGKIAISRAILEKAGKLTEEEYREIK RHSEIGSQILSSVKGMENVAEYVLYHHERWDGKGYPRQLQGREIPLYSRVIGLADAYD AMTNNRSYRKALSKKAAIQELLWHSGTQFDPELVGEFIKIL" gene 2278575..2280290 /locus_tag="Dhaf_2112" /db_xref="GeneID:7259081" CDS 2278575..2280290 /locus_tag="Dhaf_2112" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3045 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458584.1" /db_xref="GI:219668149" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7259081" /translation="MQKFRNLKTATKLNSLTMFMAVFLGLVGLVGIYSTYNLAAAVEN MYQNNLLPVKWVNGARGQTRAVEALTLEVFMTQDQSKQQEILQEMEERVAEVDTLLAD YSKADMDAHEQEQFAKLMDTLQLYRTERDKAIDMATAGNQDEAFRYFSAHAASQVDAV NDLLKELADYNAQLADEEEIKSQAKAAMTSKVMVGITLVAIVLALGIGRFIARLIANP LIQVEGTVREIAQGNLTVEKMAIDSEDEVGRLAAGINAMTENLRLLIENITHTAEQVA ASSEELTASAEQSASATNSIAATITEVAAGAARQEAAVDNAASIVEEMSAGIQQVAAT ANSVSRSAELTANAAGQGDKAVNAAVSQMKNIEKTVAGTAQVVTQLGERSKEIGQIVD AISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQEAAKQIAGLIAEI QKETLSAVKAMNEGTHEVKIGSEVVNSAGEAFDEIVGLIGDVSTQVREISAAIQQMAS GSQQIVDSVRDIDRVSKEASGQTQTVSAATEEQSASIEEVAASSEELAKMAEELQRAV RKFRI" sig_peptide 2278575..2278694 /locus_tag="Dhaf_2112" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.771 at residue 40" gene 2280568..2281140 /locus_tag="Dhaf_2113" /db_xref="GeneID:7259082" CDS 2280568..2281140 /locus_tag="Dhaf_2113" /inference="protein motif:TFAM:TIGR02937" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-70" /protein_id="YP_002458585.1" /db_xref="GI:219668150" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259082" /translation="MKTKDNYIGRLKNKDEDALEFIMDEYFPLVKGIVRQVLLPIGSR ELTEECISDVFLAVWHHAQKFKGEGEEEFRKWLCAIAKYKAIDFYRRERKNLEVPASD REAIDLFPPQESAEEQVLFMENAKEMNKLLNSFSATDRHIFIMKFFWGMPSEEISRKL GLTKSAVDNRIYRSKKQLVKGVLSLGEGGC" gene 2281143..2282294 /locus_tag="Dhaf_2114" /db_xref="GeneID:7259083" CDS 2281143..2282294 /locus_tag="Dhaf_2114" /inference="similar to AA sequence:KEGG:BAS1627" /note="KEGG: bat:BAS1627 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458586.1" /db_xref="GI:219668151" /db_xref="GeneID:7259083" /translation="MKDLYDFFNEIDIDLNEFAEAEVDELEKSRVKQRVREGIAATGQ PGGLKKRSKSKAMVAVAAAMLMTVGLSGFGLVFPAYAREVPVIGDIFRFLDDGRTGVY DLYTEKALDINMVKADNGIEVTLNQGIYDGRTLSFTYTIKTEKDFGERPRLDDWINVD FAQGSTGSSQLKRVSPGVYVGQSNYTFFSEEEAREAISFRWRISGMTNMEESTETGDY KTTDCKLNFSVSLNALDYTVVKIDDNQAQAQNVAISLNRLSLTPINTLLYYSEIVPNN LSHAVQMDWEIKDDLGNIYEHETNGGQGKVGDETTEMENIITFKRLDPKAKTLLITPT LKLVHSQGGGVAFDANGKETHFSYEGLPEGVDAGEWIMKTISVDLSTVN" gene complement(2282517..2283521) /locus_tag="Dhaf_2115" /db_xref="GeneID:7259084" CDS complement(2282517..2283521) /locus_tag="Dhaf_2115" /inference="protein motif:PFAM:PF00529" /note="PFAM: secretion protein HlyD family protein; KEGG: ote:Oter_0916 secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_002458587.1" /db_xref="GI:219668152" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7259084" /translation="MQKRPISFGFLFLGLIGFILTASGCSSPSGLVLTGIAETGIYAH YSEVSGKISQLNVELGQSVKAGDILAVLDDSNERYALEQLEQALARKQAVLAELTAGA DPEEVKQRQNNVALAEIASANAQLTQERTKKDYEDAQVLQEAGALAQSELDKIKYQAN LAEAAVSTAAIQLDNARRQLALIQKGTPQEKIDAAQADLALTEVQIRQTKDNLSKYTL HALQDGTVISRNYLPGNMISPGFNLVDIASETEKHLVAYMPKESLPKLSHGQKVVIRW GEKEYEGTVSFIDVKAQYTPKDMQTSANKNKESMKIKVNLTPEIPLKIGEKAEIIIPQ" sig_peptide complement(2282517..2282591) /locus_tag="Dhaf_2115" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.832 at residue 25" gene complement(2283964..2284980) /locus_tag="Dhaf_2116" /db_xref="GeneID:7259085" CDS complement(2283964..2284980) /locus_tag="Dhaf_2116" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: gtn:GTNG_0854 ABC transporter (permease), putative" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002458588.1" /db_xref="GI:219668153" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:7259085" /translation="MRVRALTFRILNQLRHDRRTLALMLAAPVFLLTLVYFILGDTVP LVKVAVINAPAGFEDKLEELNVRSLRYSESEARRALEQGEIIASIDISGGKSAIKVDG SNPAKAKAALAALEQAKNSALFSRPDLKSEVSYVYGQEDLPTFDNFGATLIGFIIFFF VFLVSGISFLQERTSGTLEKLLSTPVRRWEIVVGYVLGFGLFTVLQSFLISWYCVYVL KVMMVGSFALILLITLLTAMIALTLGILASTLANNEFQMMQFIPVLIVPQIFFSGLFD LPAGMEVVGHFMPLYYIAHALTEVMIKGGGFAAIAWDLGIILACSVLFMMVNALLLKK YRRI" gene complement(2284970..2285704) /locus_tag="Dhaf_2117" /db_xref="GeneID:7259086" CDS complement(2284970..2285704) /locus_tag="Dhaf_2117" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_0853 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458589.1" /db_xref="GI:219668154" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259086" /translation="MEQPHCIVLRKVNKFFGKKHVLKEIDLEIPYGHIYGLLGPSGCG KTTIVKIIAGILEATSGEAYVLGERMPRLSLMNKVGYMAQSDALYGTLTAAENLQFFG AIYGMGKGEIKKRTAEVMELVNLTEHLHKPVQAFSGGMKRRLSLAMAVMHNPPVLVLD EPTVGIDPLLRRTIWAELNTLARQGITILVTTHVMDEADKCHSLAMMRDGRLIAKGTS RELQDRIGVNDIEEAFIYYGGQQDES" gene 2285942..2286547 /locus_tag="Dhaf_2118" /db_xref="GeneID:7259087" CDS 2285942..2286547 /locus_tag="Dhaf_2118" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: bat:BAS2898 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458590.1" /db_xref="GI:219668155" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7259087" /translation="MNSTEDRRIIRTKEAIRAALVTLIEAKGFAALSVKDITTKANIN RGTFYLHYKDKFDLLDQTLEEVIKDIEGIILKITALSTADFADTRIPTAIIVRLFQYV DDNAALMQAIMATKGNYALQSKMKKLMWSNIFEKNCISLVKREKMLVPGEYLASYIAS AHFGVIQEWLDRGRQESPEEMARILVNITFHGPLFAAGIFS" gene complement(2286646..2287041) /locus_tag="Dhaf_2119" /db_xref="GeneID:7259088" CDS complement(2286646..2287041) /locus_tag="Dhaf_2119" /inference="protein motif:PFAM:PF01243" /note="PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cth:Cthe_1495 pyridoxamine 5'-phosphate oxidase-related, FMN-binding" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-related FMN-binding" /protein_id="YP_002458591.1" /db_xref="GI:219668156" /db_xref="InterPro:IPR011576" /db_xref="GeneID:7259088" /translation="MQEVYEFLKQCGTYYLATQDGDQPRVRPFGTVAIFEDKLYIQTG KVKDVYKQLKASPKIEICGVQEGGKWIRVAAVAVEDDRLEAKQHMLDAYPSLQGRYKA DDDNTIVFYLQDATATFSSFTEAPKVITF" gene 2287172..2287507 /locus_tag="Dhaf_2120" /db_xref="GeneID:7259089" CDS 2287172..2287507 /locus_tag="Dhaf_2120" /inference="protein motif:PFAM:PF01638" /note="PFAM: helix-turn-helix HxlR type; KEGG: cbe:Cbei_4108 transcriptional regulator, HxlR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, HxlR family" /protein_id="YP_002458592.1" /db_xref="GI:219668157" /db_xref="InterPro:IPR002577" /db_xref="GeneID:7259089" /translation="MEKDLYGICPYVTAQKLLTGKWTLLIMYHLSLKTMRFNELQRAL PSLTQATLTKQLRMMSDNGLIIRTVYDQIPPKVEYSLSDLGERFQPVLNAIQEWGTEY IDFLKSKSS" gene 2287731..2288453 /locus_tag="Dhaf_2121" /db_xref="GeneID:7259090" CDS 2287731..2288453 /locus_tag="Dhaf_2121" /inference="similar to AA sequence:KEGG:CTC02044" /note="KEGG: ctc:CTC02044 Ser/Thr and Tyr protein phosphatase (dual specificity)#" /codon_start=1 /transl_table=11 /product="Ser/Thr and Tyr protein phosphatase (dual specificity)#" /protein_id="YP_002458593.1" /db_xref="GI:219668158" /db_xref="GeneID:7259090" /translation="MQTIIKNLRPLSYMLSIPILNIFYALLNNADRGAYSLVTDLDQT IPFLKGFIVPYIIWYFFIFGTLVYFCLKDKKVYYRTLLAFNLGLLACYGIYFVFQTHV PRPELVGHDVLTKLVALIYSKDQPYNAFPSIHVLSTFLMVKGINKCQSKNYLNTSLVY VNAVLIILSTLFVKQHVMLDVLAAIVLGSLLFDLVYNANWEELRLSLKKPSLVRKPSL IRSHSLVRNQSLVLMVKKKSEV" gene 2288668..2289933 /locus_tag="Dhaf_2122" /db_xref="GeneID:7259091" CDS 2288668..2289933 /locus_tag="Dhaf_2122" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD1468 putative iron-sulfur protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458594.1" /db_xref="GI:219668159" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR013283" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259091" /translation="MGHITSKDAYKNLEERINWFTQGAPPSESLYKILQVLYTETEAK WVALLPVRPFTAKKAAKIWQISEGKAEALLENLCQKALLVDSFYNGVRQFVMPPPMAG FIEFALMRTRGDIDQKYLSELYYQYMNVEEDFVKDLFFATETRLGRVYVQEPVLTNNN TIHILDYERASHIIEEATHIGLGTCYCRHKMSHTGQSCAIDAPWDVCLTLGNVARSLA EHGQHARLIDKQEAMDVLERSYAANLVQMGENVREDPAFICNCCGCCCEALQAARKFS PMQPVATTNYLPKIAQECIGCGKCEKVCPVLAISMSTNAEGKKVAQVDHEVCLGCGIC VRSCPKKVIELVRREVQVITPVNSTHRFVLQAIEKGTLQNLIFDNQAFANHRAMAAVL GVILKLPPLKQMLASKQFKSIYLDKLLSK" gene 2289986..2290525 /locus_tag="Dhaf_2123" /db_xref="GeneID:7259092" CDS 2289986..2290525 /locus_tag="Dhaf_2123" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_2728 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458595.1" /db_xref="GI:219668160" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259092" /translation="MNTNLFHSLAGKDICFKALSTNDAQEIHNYAGDEEVARFIGWNL MHTLAETREHIATMIKREEAGTHLYASIVLKSTQAVIGTAMMFNFNAKANHAEIGYVL HKEHWGKGYGTESVALMTDFALTVLKLHKVQAGVVDANLGSARILEKNGYELEGRLKD HYFIDGEYYDALLFGKILK" gene complement(2290607..2291092) /locus_tag="Dhaf_2124" /db_xref="GeneID:7259093" CDS complement(2290607..2291092) /locus_tag="Dhaf_2124" /inference="protein motif:PFAM:PF02559" /note="PFAM: transcription factor CarD; KEGG: drm:Dred_3244 CarD family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CarD family" /protein_id="YP_002458596.1" /db_xref="GI:219668161" /db_xref="InterPro:IPR003711" /db_xref="GeneID:7259093" /translation="MFQVGDKIFYPLYGAGIIEAIKEKEVLGKKQFYYFLNIPHIKLK IMIPIERTHDIGIREVVKPDVLQHVLDDLYNGTTDPLSDNNQRYRRDMNKSKIKTGDI YKGTEVIRDLMRKSKVKKLSAEDKAMLENALQILTSEFIQVRGVCKEQAVHLLNEVIN V" gene 2291345..2292328 /locus_tag="Dhaf_2125" /db_xref="GeneID:7259094" CDS 2291345..2292328 /locus_tag="Dhaf_2125" /inference="protein motif:COG:COG0407" /note="KEGG: mta:Moth_2111 uroporphyrinogen-III decarboxylase-like" /codon_start=1 /transl_table=11 /product="Uroporphyrinogen-III decarboxylase-like protein" /protein_id="YP_002458597.1" /db_xref="GI:219668162" /db_xref="GeneID:7259094" /translation="MLTKRQNLWETLKGGNPDRFVKQYEFMNLIMEASVTMAGFPAPG QTSKAAWGITWMWPEGQIGPFPVHDEEHKVLKDITEWRKYVQAPVIPTDDETWAPAIA HAQAVDRNEEFVTMMAAPGVFEMTHHLMSMEDALMALYEEPEAMHELIDYLTEFELAY AKTVIEKIHPDALFHHDDWGSQINSFLSPEMFKKFFLPAYKKIYGFYKANGVELIVHH SDSYAANLVPFMIEMGVDIWQGVMTTNNTPELIEKYGEKITFMGDIDSGYLDLPDWQP ERCAEAVERACRRCGKHYFIPCLTMGGPDSIYPGVYAQVNQEIDRMSREMF" gene complement(2292464..2293441) /locus_tag="Dhaf_2126" /db_xref="GeneID:7259095" CDS complement(2292464..2293441) /locus_tag="Dhaf_2126" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amr:AM1_A0169 transcriptional regulator, AraC family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458598.1" /db_xref="GI:219668163" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7259095" /translation="MEIRGINHYMDHIEQTFGLKKTAGAGYICYTLPPEIGEGSFELY QGQEGFQVWITNAQTKQDIDMSYVQDENAYIGMAYIETDSFRDTMSNGQASAIQSWRT TRSLPSDGITHGVCRADKALHAVNIFLFPEFFQTCSDTTGANHYFDVLNTIQSFDEQT FMHDLYPILAEILHCSYKETAKRLFTKSRVYAIAAHLIALCDSESAQPHVKLNKFDMQ QIRSVPAILRKQLNNPPSIAELSRMVALNEFKLKAGFKKVFKTTVYEYLRQIRTERAI ELMKEDLPLEQIAAQIGYKSMRGFSQAFAKSTGVSPAEWRKQSHHFPAL" gene 2293629..2295422 /locus_tag="Dhaf_2127" /db_xref="GeneID:7259096" CDS 2293629..2295422 /locus_tag="Dhaf_2127" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_3808 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458599.1" /db_xref="GI:219668164" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259096" /translation="MSDSTNKKTGDIRWLLQLAETKKANLLLACLLSVFSAALSFAPY VCVYFILRVILENSGNLAGISFSSVGIYAWVALGTVILGLLFSFLSSVLSHGAAYKIL FELRMKFAGHISQLPMGFHTSNSTGKLRKLMDENVEKLELFIAHQLPDAVGSLASPVV MLVVLFLFDWRMGLACLVPIVLSFMAQAGSLANPESKEFMESFQDLQDKMNSSAVEYV RGIYVVKAFNQTVFSFRKFHDTILAYKDSAIRYTHSVKNSYCAFLVLLNSVFLFLLPV GILIGSRAADYQAFAIAFLFYLIFSMGIAGPVSKLMYVFVQGFMVSSSIKRVRGVFDT PVLSVGVNREKPRGNGISFEHVFFSYNKDDAKGTLHDISFTAEPGQVTALVGPSGSGK STIAQLIPRFWDIDSGQIAIGGVNITDIALDDLMQSVSFVFQDVFLFQKSILENIKIG NETASDEDAVWAAKAAMCHEFIERLPDGYHSVLGSKGTYLSGGERQRVVIARAILKNA PIVILDEATAFADPENEQKIQLALEKLMKHKTVIVIAHRLSTIKNADKIIVVDEGRIA EQGTHEELIRYGAKYGHMWDVYSKALNWKLA" sig_peptide 2293629..2293751 /locus_tag="Dhaf_2127" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.713 at residue 41" gene 2295435..2297171 /locus_tag="Dhaf_2128" /db_xref="GeneID:7259097" CDS 2295435..2297171 /locus_tag="Dhaf_2128" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_3807 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458600.1" /db_xref="GI:219668165" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259097" /translation="MLKKLLALTDKSHKELKKSILASFLAQLSLSLPVMILMMTFIEI LQPFWGGEVEWPKLWILAAASVVVVVLAFIAHRYEYGKTYVTAYEAAEEKRTGLAEHL RKLPLSYFGKKDLTEITVNMMSDCGTIEQSFSSIIPAFGGTLINLLFTCVLLAVFDWR MALAIFISVPVSFGFLLLCRTMHDRIGRAHLQSKLDASEQMQEYLEGIKVIKAFGLGG DKFKSLEEAYRQLMKISTKTETVNGALTTISMMMLRFSIPLTIFVGLSLVTAGSLDLL YFLLFLIFSSRIYTSLSTPLALWGDLLYSLLAIKRLHEVYEETPMGGSDGVVLQHYTI EFDHVSFGYQEEAVIKDISFSIPQGKVTALVGPSGSGKSTLSKLIARFWNVDAGSIRI DGTDIRKIDPERLLTWISFVFQDVVLFNDTIYNNIAIGKSGATREEVEEAARRANCHD FVSRLPEGYDTLVGENGSTLSGGERQRISIARALLKDAPIILLDEATASLDPENELEI QEALSQLIKDKTVVVIAHRLRTIAGADNIVVLENGRIAEQGSGPELLRAGGLYAKLFG IQQETAGWAVEA" gene 2297216..2298469 /locus_tag="Dhaf_2129" /db_xref="GeneID:7259098" CDS 2297216..2298469 /locus_tag="Dhaf_2129" /inference="protein motif:PFAM:PF07859" /note="PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppd:Ppro_3541 alpha/beta hydrolase domain-containing protein" /codon_start=1 /transl_table=11 /product="Alpha/beta hydrolase fold-3 domain protein" /protein_id="YP_002458601.1" /db_xref="GI:219668166" /db_xref="InterPro:IPR013094" /db_xref="GeneID:7259098" /translation="MENPEIKKSPIKPGFWAALVLTFLVAMLLTIILENRWYSYAVTG GVASALLTIRIKLSPQGLRYGAVWLLCLCLLALSVAFGRSALSVSLTGDLFNKGFRAI NHVYARSHGSAIFHDTMLNGQREPYDFESWQAPQGYRNSKISLSNSSGYLLTRDNGNH KKVIYQLHGGGYIGVFNKIYNDRALQYSSCYDGADVFSLDYRTAPDHLYPAALEDALE GYQWLLEQGYPADQIILCGDSAGGGLALATTLYLRDHNQALPELLILSSPWADLAQTG ESYSTNIQKDAFFGLPDADMKPQYPIPILYAGDHDLHDPYLSPVYADYANMPPMLIQA GGDEILLSDSQTIAAKAKEAGTEVKFLTYEGMYHAFYIVTPHFREGKDAWAEIERFIR EHASSGQFTEKIKLPITFTPERSTG" gene 2298766..2299116 /locus_tag="Dhaf_2130" /db_xref="GeneID:7259099" CDS 2298766..2299116 /locus_tag="Dhaf_2130" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: bce:BC3497 ArsR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002458602.1" /db_xref="GI:219668167" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7259099" /translation="MDKHEQLQLIKEDFLNCQKLLLAIGDENRQAILMVLMETTCQTG LRVGEITEQVHLSRPAVSHHLKILRDAGIILMREEGAKNFYYINMSGKFALLKNLVLH IEDLMQEFYSGNDE" gene 2299132..2299839 /locus_tag="Dhaf_2131" /db_xref="GeneID:7259100" CDS 2299132..2299839 /locus_tag="Dhaf_2131" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: cpy:Cphy_1360 hypothetical protein" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002458603.1" /db_xref="GI:219668168" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7259100" /translation="MWSAMEKRISRRKFAKEPITDQEKEKIIALIDEFNAASGLAMTF LADGSHAFQKLSKSYGLFTNVRSLIVMKGKKELQDLKEKLGYYGEELVLAITDLGLGT CWVGGTFDKDELMADDGEELVCVVLVGRVAAPSLTEKMVRSATHRKVKAMAERIISDQ PLPQWTENGMKAVLLAPSAKNSQKAMFKYENNSLSAGIADDYAMDLVDLGIAKKHFEI GAGGKFEFGNGGVFHLS" gene 2299923..2300423 /locus_tag="Dhaf_2132" /db_xref="GeneID:7259101" CDS 2299923..2300423 /locus_tag="Dhaf_2132" /inference="similar to AA sequence:KEGG:CD3210" /note="KEGG: cdf:CD3210 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458604.1" /db_xref="GI:219668169" /db_xref="GeneID:7259101" /translation="MRLLIHDLAQEELDKIRPGLGGDTKIIANNGRIRHCIGCFGCWV KTPGACVIRDEYGDMGADLGHSSELIIISQCFYGGYSPFVKNVLDRSISYIHPYFVIR NGEMHHRPRYEQPLDLSVWFYGEITEKEQRTAEKLVRANAVNLNCQRVKVFFIRELAE LEGQLC" gene 2300417..2301058 /locus_tag="Dhaf_2133" /db_xref="GeneID:7259102" CDS 2300417..2301058 /locus_tag="Dhaf_2133" /inference="similar to AA sequence:KEGG:TDE1064" /note="KEGG: tde:TDE1064 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458605.1" /db_xref="GI:219668170" /db_xref="GeneID:7259102" /translation="MLKIALINGSPKAKNSASEAVLQALRTLVEDSKITEYGFRKPQL SLEDLEQLEEQDVWVLAFPLYVDGIPSHLLSCLAQLENHFKAKAQPGSEVVVYCLVNC GFYEGEQCGLALEMVENWCARAGRQWGQGLGIGAGGMLPTLKNVPAGSGPKKNLGKAL QTLAANIVHRTGGAPVFITANFPRFAYKFAAEAGWRQMVKANGLKKEELFRRR" repeat_region 2301233..2302741 /note="ISDha5" gene 2301388..2302740 /locus_tag="Dhaf_2134" /db_xref="GeneID:7259103" CDS 2301388..2302740 /locus_tag="Dhaf_2134" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: pth:PTH_2669 hypothetical protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002458606.1" /db_xref="GI:219668171" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7259103" /translation="MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVV FQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVGRF EKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSF APLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSPKPDTVVQMLERALKAGFS ADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPK AEILGSVRVHTPSGLALKVVFVQNRNNRREWLAILTTDLSLETTEVVRIYGMRWSIET FFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFA DEVMDLDLKTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES" gene 2302811..2302945 /locus_tag="Dhaf_2135" /db_xref="GeneID:7259104" CDS 2302811..2302945 /locus_tag="Dhaf_2135" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458607.1" /db_xref="GI:219668172" /db_xref="GeneID:7259104" /translation="MVGENQRGITMEWPLEQQPELAVGVDVIIHTLQRCRMIQYGKSV" gene 2303058..2304053 /locus_tag="Dhaf_2136" /db_xref="GeneID:7259105" CDS 2303058..2304053 /locus_tag="Dhaf_2136" /EC_number="6.1.1.2" /inference="protein motif:TFAM:TIGR00233" /note="KEGG: bat:BAS1099 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib" /codon_start=1 /transl_table=11 /product="tryptophanyl-tRNA synthetase" /protein_id="YP_002458608.1" /db_xref="GI:219668173" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002306" /db_xref="GeneID:7259105" /translation="MAVIFSGVQPSGTITLGNYLGAMKNFTSYQNEHECYFCIVNQHA ITVPQEPEQLRKNSRNLAALYLAIGLDPDKVTLFIQSEVAEHTKLGWIMTTLATIGEL ERMTQYKDKAQRHGNGDSIPAGLLTYPPLMAADILLYQTDYVPVGDDQRQHIEITRDL AQRFNSRYGEAFKLPAIHTREVGARIMSLQEPKKKMSKSDANSLATPYLLDEPETILK KIKRAQTDSENKIYYDREGKAGISNLMAIYSLITDKSTDEIEQLYEGKGYGQFKNDLA EAIIETTRPIQKRYYEFVHSDYLDQILTAGAAKAARKAAATLNKVEYLMGLSRNC" gene 2304171..2304299 /locus_tag="Dhaf_2137" /db_xref="GeneID:7259106" CDS 2304171..2304299 /locus_tag="Dhaf_2137" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458609.1" /db_xref="GI:219668174" /db_xref="GeneID:7259106" /translation="MNDLVTERTPLVIAAEINMITHQTKKILLLRADDSPDQSDPS" gene 2304718..2305584 /locus_tag="Dhaf_2138" /pseudo /db_xref="GeneID:7259107" gene 2305603..2305974 /locus_tag="Dhaf_2139" /db_xref="GeneID:7259108" CDS 2305603..2305974 /locus_tag="Dhaf_2139" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: aoe:Clos_2101 FMN-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458610.1" /db_xref="GI:219668175" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7259108" /translation="MKKTKLFTVICMLLAVVLLAAGCGGSTSPASTSVYKDGTYEGTS DKGIQLGLKVSVTIKDDKITDVTVVENHETEGIGSRAVAELPGKIVEAQSTEVETISG ATLSSAAIKEAVNLALEQAKK" sig_peptide 2305603..2305701 /locus_tag="Dhaf_2139" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.632 at residue 33" gene 2306072..2306425 /locus_tag="Dhaf_2140" /pseudo /db_xref="GeneID:7259109" gene 2306626..2306895 /locus_tag="Dhaf_2141" /db_xref="GeneID:7259110" CDS 2306626..2306895 /locus_tag="Dhaf_2141" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458611.1" /db_xref="GI:219668176" /db_xref="GeneID:7259110" /translation="MKCVSIAIIAMASLLGGCGQHVIIDWVDFVQLNDIHALHDDSNE LFELKVYSDNPIYRSTDKIRISATLKYGDINPISISDKITIKVVE" gene 2306930..2307517 /locus_tag="Dhaf_2142" /db_xref="GeneID:7259111" CDS 2306930..2307517 /locus_tag="Dhaf_2142" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458612.1" /db_xref="GI:219668177" /db_xref="GeneID:7259111" /translation="MRNFNKITVAAILVMVLVLGYYFAGDYRATPLAAAKAHSDVGKN AEPLGDVDFGWSKVYILDTDKGPRTVISIKSSLLWRAPVAVHIEKSADPIETVGWMSY TDNRGQAAVLAVETTDPQIAFIEAGPKDDRVRKEITEGSPAIFSWHKAIQANNELNAI ALSTDGMPLYEYRYPKNTNVFRSEEFKWYSVDGDQ" sig_peptide 2306930..2307004 /locus_tag="Dhaf_2142" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.951) with cleavage site probability 0.786 at residue 25" gene 2307877..2308569 /locus_tag="Dhaf_2143" /db_xref="GeneID:7259112" CDS 2307877..2308569 /locus_tag="Dhaf_2143" /inference="similar to AA sequence:KEGG:Cbei_3374" /note="KEGG: cbe:Cbei_3374 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458613.1" /db_xref="GI:219668178" /db_xref="GeneID:7259112" /translation="MFRLTKKLLLVFTVIAFTFTFTVGCSAQSNPPQASSGLQEQSPS SEPQPQNEPEQTAPDSQITNPPSSSNQTDSSQALLVSIRELAEKGKVINSDFAAKLTV IEDVEKKWGKPDSVDWVAAAKGNYAVYADHAMVFGFNKGSQIFEVRSFDKQLQNITLS KVKNSFGTPAYTATVGEEDIIGYTAGEEFKILLVFPKATSANPDPALDHYSVLYPQGT VNSMANDPGRQW" sig_peptide 2307877..2307960 /locus_tag="Dhaf_2143" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.840 at residue 28" gene 2308585..2309403 /locus_tag="Dhaf_2144" /db_xref="GeneID:7259113" CDS 2308585..2309403 /locus_tag="Dhaf_2144" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; transcription activator effector binding; Transcription regulator MerR DNA binding; KEGG: bsu:BSU05460 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002458614.1" /db_xref="GI:219668179" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR010499" /db_xref="InterPro:IPR015358" /db_xref="GeneID:7259113" /translation="MNELFSIGEISKLFNIDVRLLRHYDKIALLKPEFVNEENGYRYY STRQFECLNTIHYLRSLNMPLPKIREFLENRDDKKILKILREQKRQVEEERKQLDRIE RKIENRLLQIEDAFQTEFDKIEERTLKERKIAVLKKELAISDDLEQPIRELAKRNSLH AVMFLGKVGVSISSANLQRGNFDKFSAVFVVIEPEDNCQENLSCLPGGNYLTLRFQGT HPDAEASYIKMLQYMKENGYELAGDSLEFALIDYGLTNDPSKFITELQIPYKKP" gene 2309454..2310131 /locus_tag="Dhaf_2145" /db_xref="GeneID:7259114" CDS 2309454..2310131 /locus_tag="Dhaf_2145" /inference="protein motif:PFAM:PF04474" /note="PFAM: protein of unknown function DUF554; KEGG: lsp:Bsph_3213 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF554" /protein_id="YP_002458615.1" /db_xref="GI:219668180" /db_xref="InterPro:IPR007563" /db_xref="GeneID:7259114" /translation="MIGTIVNTLAILVGSMMGGSIKKGIGEKYQNALYNAMGLAACGL GINAIVQSMPKSTFPVLFIISLAIGSLAGSFINLNDRFERLTKRFSKGNLSQGLSTAI LLFCVGTLSILGPMESALHDNHTYLYTNATLDFVTSLVLASAYGIGIALSAVVLFLWQ GSIYLLSGYLSSFLTAELLNEVSLIGGFLILSSGLSILKIKDCNALNMLPALFVPIVW FIIKAIL" gene 2310563..2311249 /locus_tag="Dhaf_2146" /db_xref="GeneID:7259115" CDS 2310563..2311249 /locus_tag="Dhaf_2146" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbf:CLI_1395 DNA-binding response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458616.1" /db_xref="GI:219668181" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259115" /translation="MSTINKILIVEDDLALSEGIVLAFKDNNFAFVQTRNLTEARQAV RNTSIQLVILDLNLPDGNGLEFLKELRRTSAVPVIILTANDLETDVVRGLELGADDYI TKPFSLMILRARVNARLRNAHPSAGDTVEIEGFCFSFAKMEFAKDGVPIELSKTEQKL LRLLLENRGQTLTRAQLVDAIWTEGAEYVDENALSVTVNRLRNKLEDLPSSPRFIKTV YGIGYTWAVP" gene 2311251..2312213 /locus_tag="Dhaf_2147" /db_xref="GeneID:7259116" CDS 2311251..2312213 /locus_tag="Dhaf_2147" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_3043 predicted sensory transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458617.1" /db_xref="GI:219668182" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259116" /translation="MDTWIWAAGAAAVAVTVTALAAGVTFWQRRKTRRIMDSLNTMLD RAIEGSFAETAFDESLLSATEAKMARFLGVCQVSSQSLAAEKDKIKGLIADISHQTKT PIANLLLYSQLLEEHELPEEGALCVKALSAQAQKLDFLIGALVKASRLEAGIIAVTPR QGEVQALIEAALAQIRLKAEEKGIRIEAERAAGRAYYDPKWTAEALYNILDNGVKYSP PQSLIRIRAIPYELFYRIDISDEGMGIAEAEQSQIFARFYRSPAVSGQEGVGLGLFLA REILAAGGGYIKVSSKPGQGAVFSVFLPIEKTLKSYKTVRSEKE" sig_peptide 2311251..2311316 /locus_tag="Dhaf_2147" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 22" gene 2312287..2312964 /locus_tag="Dhaf_2148" /db_xref="GeneID:7259117" CDS 2312287..2312964 /locus_tag="Dhaf_2148" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_3392 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458618.1" /db_xref="GI:219668183" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259117" /translation="MVILKTTDLRKYYGEGDTAVRALDGVNLAVDKGEFVAVVGTSGS GKSTLLHLLGGLDRPSGGTVAVDGKEIFSLKDEELTIFRRRKIGFVFQSYNLVPVLNI YENIILPIQLDGNEPDEEYVTRIVQTLGLESKLQNLPGQLSGGQQQRVAIARAIATKP AIILADEPTGNLDSRTSQDVMGLLKVTGEKFRQTIVMITHNEELAQLADRIIRIEDGK IAGGGRT" gene 2312961..2315456 /locus_tag="Dhaf_2149" /db_xref="GeneID:7259118" CDS 2312961..2315456 /locus_tag="Dhaf_2149" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: cbk:CLL_A1863 efflux ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458619.1" /db_xref="GI:219668184" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7259118" /translation="MIKVKNNKAIRTLADRNFRTAGTRNLIAVIAIALTAILFTSVFT MGFGLVESTQRASMIMSGGDGHAAVKYVTDEAYERIREHPLIEEMAYCRILSDSVDNQ ALIRRHTEFWYYDDVGLKYGFAEPTGGHKPQAGNEVIADTKTLELLGVPLEVGAPLTL EITVHGRQVLRDFILAGWWESDPGFNIGQIFASRAYVDAHRDELHYTYPEDKSLTGTV TGYLKFANSLNIAENLEKVVTESGFSMEEGDPNYLATGVNWAYLSTVVGMDAGTLTAL ASALLLFVLTGYLIIYNIFQISVLRDIRFYGLLKTIGTTGRQLRAIIRRQALRLSLIG IPLGLLAGFLVGKALVPYLMERSSYAGSGVSVSPDPLIFAGAALFALFTVWISAHKPG KMAAGISPVEAVRYTDQERSSGKKLKKSRHGAKPWRMAMANLGRNKRRTVLVILSLSL SIVLTNTVFTISQSVDLNKGLEKFSDSDFLLGHANLFNNQYDGESSALSESFISAAGA QEGFETGGRLYGSWASYQSGTSAQIMNRQPDGSLATALYGLEEFPFSRLKLVDGELDR EKLAGGDYVLEGIQADDQGKVETGRFNHQVGDKITLNCGGTEWEMTVLGHVVANPQTN TNGSWIGSAFFLPADIYRELTGNSFPMSYAFNVAEAQERDLENFLKRYTAEIEPTMNY SSKFTALSSLEGLRNTAVLIGGSLAAIIGIIGVLNFVNAVLTGILTRHRELAMLQSIG MTRRQLVGMLCSEGGCYAALTGISSILLSVGFSLLILRPLSEQIWFLSYRFVFWPLLI ILPLLFVLGALVPYTVYYATAKQSIVERLRMAE" sig_peptide 2312961..2313101 /locus_tag="Dhaf_2149" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.456 at residue 47" gene 2315607..2316077 /locus_tag="Dhaf_2150" /db_xref="GeneID:7259119" CDS 2315607..2316077 /locus_tag="Dhaf_2150" /inference="similar to AA sequence:KEGG:SGO_1349" /note="KEGG: sgo:SGO_1349 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458620.1" /db_xref="GI:219668185" /db_xref="GeneID:7259119" /translation="MMKKKVRAELTKLYTGELASIVVFLVLYYWQFEGFVLPVLYPLS ILCFILWQGALYWFLCLQRLKGKTIKNVGRVFYIFKYINLVLIALSIPVILLSSHDNL LYTVLGFFLSLFAVVEWINYFLVRLSYKNPKILISLLRHSQLKRSKLAKEIAER" gene complement(2316113..2316583) /locus_tag="Dhaf_2151" /db_xref="GeneID:7259120" CDS complement(2316113..2316583) /locus_tag="Dhaf_2151" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbl:CLK_0170 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458621.1" /db_xref="GI:219668186" /db_xref="GeneID:7259120" /translation="MPFMSVEKSVHVKATPQNCILAFKEAISTLDKYSIRCENTSTNT IEVDKKLSFTRGGNGENVSFSAKPVGSGCDILITVSSKGLPYLLWQRNCEKVAQDTLS AFSEKIQSYLTNEQDEKSVFLSAADEIKKYKELLDIGAISPDEYEAKKKQLLAL" gene complement(2316818..2317822) /locus_tag="Dhaf_2152" /db_xref="GeneID:7259121" CDS complement(2316818..2317822) /locus_tag="Dhaf_2152" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: ter:Tery_4644 allergen V5/TPX-1 related" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002458622.1" /db_xref="GI:219668187" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7259121" /translation="MKITKAISSTLLVTLFMFTAIPSAVFGVSADKYSYSLTGKIGTE TATLQFEPSPAEEYEVVLVEANAEVKFTPKETMSATIRAYDPDGFYAGSLMWTIDGQE EAVTEIEANQTATAILTEYFWGMEPYYVLSFGNADDTTTKIVYKISDGVAAPAPETTP APTEEPAPAPTPEPAPAPTPEPAPVPTPEPTPAPAPAPAPAPAPAPTPAPVAESQGNV TYAVQAGDTLGTIALNNYGSYEYHTKIYNANKELLKKNNNNLTVGMSLVLPGDGLLPA LKSESGTIYTVQAGDTLGKIAAKHYGDASKYMNIYEANKDRIKNPNLIFEGQKIVLTK" sig_peptide complement(2316818..2316901) /locus_tag="Dhaf_2152" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.916 at residue 28" gene 2318344..2318844 /locus_tag="Dhaf_2153" /db_xref="GeneID:7259122" CDS 2318344..2318844 /locus_tag="Dhaf_2153" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_0781 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458623.1" /db_xref="GI:219668188" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259122" /translation="MKKGTNMRIIKAAYEHFEIVQKIVNETIGTAYPNYYPQGAVDFF LRHHSREAIQKAIAGNEVFLLEAEGEFVGTGSIKENEINRLFVLPAYQGKGFGTFMMD ELEELIFAAYPEAVLDASLPAYEMYSHRGYVPVEYHRIKTDNGHYLCYHVMKKGCCGK SDSPSD" gene complement(2319003..2319293) /locus_tag="Dhaf_2154" /db_xref="GeneID:7259123" CDS complement(2319003..2319293) /locus_tag="Dhaf_2154" /inference="similar to AA sequence:KEGG:Cbei_4523" /note="KEGG: cbe:Cbei_4523 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002458624.1" /db_xref="GI:219668189" /db_xref="GeneID:7259123" /translation="MIFVSHRKQNLQPGIEFANVTCIAYSMHLAAACLGLGSVFIWGS LEAMREIPELDNTAVLNLPDDFEPLLGIAIGHPEQKFKARDLRTDKLAINYL" gene 2319682..2321631 /locus_tag="Dhaf_2155" /db_xref="GeneID:7259124" CDS 2319682..2321631 /locus_tag="Dhaf_2155" /inference="protein motif:PFAM:PF04122" /note="PFAM: Fibronectin type III domain protein; putative cell wall binding repeat 2-containing protein; KEGG: ckl:CKL_2876 predicted cell wall binding protein" /codon_start=1 /transl_table=11 /product="putative cell wall binding repeat 2-containing protein" /protein_id="YP_002458625.1" /db_xref="GI:219668190" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7259124" /translation="MKKLKLTVILCLILFMSIVPLNTYALSSPSALTNSPGLSDGSIE AGERISGEDRYETAAAIARAGWDTAHYAIIASGESFPDALCAASLAKQYNAPILLTPK NTLAKATEEILLAKGVKEVMIIGGPGVISENVIKSIEDLGIDAARIAGINRYETSLKV AQAMGDFKEAVIASGQHFQDVLSIASIAAKKGMPIIFTPQDSISSDLKNLLEQKIENT YVLGSDDAISDAVYRQLPSPRRFTGSDWYELNVAIVEAFAPELDMSLCFVAAGSSYPD TLAGSALAASSGSPVLLVGSPLKEVTSSFLQENSPHIQKIVAFGGTSALADNLLDTIA VKAGVADNAKGNAIGNEIGSESRELAVSNLKATAVSAKQIYLAWDNNSEASLYTVYRA AAADGRYMELATAFSPYYIDTSLNPGTTYYYKVKAHTKSESGPYSKIISGTTPPVSEN LSQPQNVAVSVADAHQANISWDAVSHADYYDVYRAASANGAFVRIATVEHPYYLDADL TSGVAYYYRIQAVSASSVSPYSAVVQTGGDKDPGSPSSAGAGSATDTISDTNTLGTPG GFEVISLETGEVYLGWNKVDNATYYTIYKSASKTGPYSILGTVVNTHYYDDNLLSKTA YYYKIQACNETSKGSQTEAKYVITK" sig_peptide 2319682..2319759 /locus_tag="Dhaf_2155" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.856 at residue 26" gene 2321865..2322593 /locus_tag="Dhaf_2156" /db_xref="GeneID:7259125" CDS 2321865..2322593 /locus_tag="Dhaf_2156" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF820; KEGG: swo:Swol_2466 hypothetical protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002458626.1" /db_xref="GI:219668191" /db_xref="InterPro:IPR006442" /db_xref="InterPro:IPR008538" /db_xref="GeneID:7259125" /translation="MRVPSTEVQNNFGKYLKFVEVHEEIIVTKNGRDIARILPCDEPH KSLVAEEAAEYQTRGGRVTYEEFLELVESSDQRFELIDGVIYNLASPSYGHQYAVREI MGTFYNWFKNKKCIPLTSPFDVTFFKTEDNICVVQPDIIMICDPDNMDKKGKYKGVPA LVVEVLSMSTRSKDIIKKLELYRQCGVKEYWMVDPKNKLINVYVLEQQEIADIRAFQK GAHEYAESACFSGLKVELAEVFLS" gene 2322590..2323342 /locus_tag="Dhaf_2157" /db_xref="GeneID:7259126" CDS 2322590..2323342 /locus_tag="Dhaf_2157" /inference="protein motif:SMART:SM00382" /note="SMART: AAA ATPase; KEGG: mac:MA0995 hypothetical protein" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_002458627.1" /db_xref="GI:219668192" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259126" /translation="MKSKNLSPYIKYIELDRVRVPSFSRYPFHLPAVRNLDTLALHPK VTFLVGENGSGKSTILEAIAVAYGFNAEGGTKNFNFSSRRTHSDLSDYVKVVKGTRTP RNGFFLRAESFYNFASNLDDLDSEMAFGPSLIDSYGGRSLHEQSHGESFFAVFLNRFS GDGVYILDEPEAALSPSRQMSMLSRMHELVGEGAQFIIATHSPIIMAYPDALIYQIAD DIEQVGYQETEHYRITRAFLNHPQKMLKLLLE" gene complement(2323365..2324975) /locus_tag="Dhaf_2158" /db_xref="GeneID:7259127" CDS complement(2323365..2324975) /locus_tag="Dhaf_2158" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_1514 histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458628.1" /db_xref="GI:219668193" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259127" /translation="MKQQKKSITFKLFIITSLFFIFFTSLTMLLQTVFIENFYLSKKT KDFEANFQQFSSAYSRLAENSTDSSALLSEFQDKNNASTAIINLSGSTLRIFEDKRQL LLKIAKRPASGSGPMSEITDDIITYNMDSKMKMLINGMRQWTSDPLAVAMVLDEGKHL IYHSGVKIDGQNSLVGIAPIVSGGKVTGVLTAAASLQPIGEAAAVIRQFYVYFYLIAL VLIFALSFIYSKIIAKPLVTLNKTAIKLAEMDFSAKCPLNSQDELGSLSTTLNFLSDK LDSSISELKAANENLKEDIEREKKLDLMKNEFIAGVSHELKTPISLISSYAEGIKDNI THGAKREYYAHIIMDESKKMASLVEDMLDLSQLESGSFKLKVEDFSLTGLLNSISERY AGDLRRKGKNLDLSIPAYDLEVRADMFRIEQVLTNLIDNGIKYSLEGGIIKISAHDQS DTVTIEVENPGEPIPEAELPHIWSKFYRIEKSRNKELGGTGLGLSIVREILDRHGSAY GAENTVSGVKFFFTLAKIKGPAEGWADR" sig_peptide complement(2323365..2323448) /locus_tag="Dhaf_2158" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.958) with cleavage site probability 0.478 at residue 28" gene complement(2324972..2325655) /locus_tag="Dhaf_2159" /db_xref="GeneID:7259128" CDS complement(2324972..2325655) /locus_tag="Dhaf_2159" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_2180 DNA-binding response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458629.1" /db_xref="GI:219668194" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259128" /translation="MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKS KQVDLILLDIMMPKLDGLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYIT KPFSLKVLVAKINALLKRADAGAQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEF ELLVCLVRNKQRVLTREMMMNLVWGYEYYGDLRNVDSHIKRLRQKLKSEGRLITTVRG SGYKLEAGQ" gene 2325885..2326763 /locus_tag="Dhaf_2160" /db_xref="GeneID:7259129" CDS 2325885..2326763 /locus_tag="Dhaf_2160" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_4743 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458630.1" /db_xref="GI:219668195" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259129" /translation="MKWPKISAKRKINLLPWLFLGPSLTGFALFYLLPFMDGFFYSLV DSPLNGNFVGLRNYSELLRNPSFLTALANTGKFTLVCVPLNMLFSLGVALLLNKKIQG SNFFRTLFITPLVIPVASVVLVWQAFFDINGVLNSFIHALNLQPVDWLKSEWARAAIL VAYLWKNTGYSMVLFLAGLQSIPVEYYEAARIDGAGRLQEFLRITLIYLTPTAFFVFV ISTINSFKVFRETYLMAGEYPHSSIYMLQHYMNNMFTALDYQKLTSAAFIMAAFIVAV VLLLFIVERKISRLIN" sig_peptide 2325885..2325971 /locus_tag="Dhaf_2160" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.805) with cleavage site probability 0.608 at residue 29" gene 2326827..2327711 /locus_tag="Dhaf_2161" /db_xref="GeneID:7259130" CDS 2326827..2327711 /locus_tag="Dhaf_2161" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_4742 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458631.1" /db_xref="GI:219668196" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259130" /translation="MFEKHFLHKLVYFMILLVLAVFFLFPLGVTLTNSLMSEQEIAAN YGLVTDKSLNSYQDSGADPFARFELIPDMVTLKQYYSVLLKKTQFLFMFWNSVLLTFP IVIGQTLVATLAAYAFAKMKFKGRDVLFFLYIVVMLMPFQVTLVPNYIIAGQLGLLNN PLSIIFPGIFSTFGVFLLKQYMEQIPDSYLEAAKVDGANPFQIFLKIIVPMSRAGIAA MAILVFIDNWNMVEQPLIFLQDATRQPLSLYLAKIVDGEKGLAFAASTLYMLPMLLNF LYAERYLLEGIRLSGIKG" sig_peptide 2326827..2326913 /locus_tag="Dhaf_2161" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.927) with cleavage site probability 0.419 at residue 29" gene 2327770..2328963 /locus_tag="Dhaf_2162" /db_xref="GeneID:7259131" CDS 2327770..2328963 /locus_tag="Dhaf_2162" /inference="similar to AA sequence:KEGG:Amet_4741" /note="KEGG: amt:Amet_4741 RND family efflux transporter MFP subunit" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_002458632.1" /db_xref="GI:219668197" /db_xref="GeneID:7259131" /translation="MPKEEPADFIPPHEGRKKQTIGRLSLMFFMMMMVLTFFSNTLLH FTLPKVEAERPANGVLIKEIFGEGTVEVKQMWEEYAKANLPVKEVLVERGDRVSKGQT ILSLDIRSLQDSYLDEQTRLQLLELSLAGAEDTLEQKQRDYENIKALVENGAEAEINL RNAEKALAEAARNCDTTRLNLTMQERKVQSLAEQVANGGIYTAPAAGIITELNFAAGS SANSTQPLFCLADTGQGFRLVVPIAGELAEYAQPGDTVSVNIYSLDQRIEGKIERITD NSQHPGEQKDVWIDLAGEGLAGEGLAGGEKGEIYLSKKTKPYPALVPNSAIYTDSDGS FVYVLKSRKGPLGMENYVQRLEVNVEDSDNEKSALTNMIADEVIIQSNKPLADGDKVL KEAAN" gene 2328960..2330366 /locus_tag="Dhaf_2163" /db_xref="GeneID:7259132" CDS 2328960..2330366 /locus_tag="Dhaf_2163" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_4740 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458633.1" /db_xref="GI:219668198" /db_xref="GeneID:7259132" /translation="MKPGNTQPSRPQSAKAACLMLALGILLLTVSSVLGESLSAQMTG IYGLHQTHKITAVRQEDAGPAGSGPLTLAEMGQLAQYYLNGHDLAYGTKVSATAVYGN NQSLVQVLGVNGRYRQFHTIDLMAGSFLTPGHENQQVAVIDEQLARSLFGNCQVTGLE IELYERKFTIIGVTGTDNSLTGSLAAQETGTVYIPITKLLELQEGSAITFLEAETRDS GTTGYNTALLEEALTAVGQDPGAFRITDYTMEFLLLNQKNHLRNFLAGVVVLGLLFNL FKKNVRETYDFLGSRLREKYWGEIFRKDGGRLFSGLVKAVLPLGGMLALWFLIRFPLY IAPENIPQELIDLSFWADLLENRLKASFQGGGSGAFPGEAHLHLLQGIQNWNLLLSLV LGWPLLGWGLHRLNIPEKGTWKMELFFCACLIMALLLGTGILLAAGMPLASDGKGIFL VFAAVFLAAVLKGASIKN" sig_peptide 2328960..2329067 /locus_tag="Dhaf_2163" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.940 at residue 36" gene 2330382..2331560 /locus_tag="Dhaf_2164" /db_xref="GeneID:7259133" CDS 2330382..2331560 /locus_tag="Dhaf_2164" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tpd:Teth39_0561 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458634.1" /db_xref="GI:219668199" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259133" /translation="MAGLLLKNISKTYPGQVTAVRNLSLEIQDKEFLVLVGPSGCGKT TTLRMIAGLEDISAGELYIGDRLVNDVPPKDRDIAMVFQNYALYPHLSVYDNMAFGLK LRKMPKGEIRQNVLEAARILDLEDLLGRKPKELSGGQRQRVALGRAMVRKPQVFLMDE PLSNLDAQLRTQMRIEIARLHKKLATTFIYVTHDQTEAMTMGTRIVVMKEGLVQQVDT PQHIYNHPANRFAAGFIGNPRMNFLEVSFKEQKNGLCAGLGGVLLSVPPVRGAALRAK GCRQGGKAILGIRAEHLALRPLEGRFPACPPELPLVRGRLEFTELRGAENYHYVTVQG REVVVRAQPEYRGEAGQEVEIVFNLAQAHFFAPESGVNMETEGQEHCVSREQMDSGLM" gene 2331600..2333045 /locus_tag="Dhaf_2165" /db_xref="GeneID:7259134" CDS 2331600..2333045 /locus_tag="Dhaf_2165" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_4739 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_002458635.1" /db_xref="GI:219668200" /db_xref="InterPro:IPR006059" /db_xref="GeneID:7259134" /translation="MNNTISCLLSKKRVYLLLSLGLVLLLGVFAVGCGNSQVSGAAGG SNTLTISVVTKDIYLDAAVKKFEELHPGVTVKVEEYTSNPLPASSGGKNQEMILRKED PADIEKYLTAMNAQLMTGQGSDILLLNHLPYETYADKNLLVDIGQLMESDPGFDLSKY YGNILEALKYKDSLYGLPLSFSVDMMAADKALLENSQVEIDDSTWTWEDFVQAAEKVI EDRNGGEDGEIYALAGMNETMLITSLVRENFSKLVDGEKKEAYFDSQEFLDLLNLCRY LIDHNLLNTEPSQNKAMELAARGNLVFSITSLKGLVNLQTLKATFGGEVQLLKPPGQE GDLSFSTDSLYGINNNSANQELAWEFLKFLVSDEMMSQSMFLGMPVNKSVVPEMINQA NDTAQKRGAKIMMKSAGESQAQNITLEPLAQEDIDFVESLLTKANVYNGTNQKILSIV QEETTAFFTGQKSAEMTAKLIQDRVNTYLHE" sig_peptide 2331600..2331722 /locus_tag="Dhaf_2165" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.283 at residue 41" gene 2333198..2333911 /locus_tag="Dhaf_2166" /db_xref="GeneID:7259135" CDS 2333198..2333911 /locus_tag="Dhaf_2166" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL1146 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458636.1" /db_xref="GI:219668201" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7259135" /translation="MHRDSVSLNSYEEMAEYYFSYVDRKPFNAYYERPATLSLLPDVA GKRVLDAGCAAGWYTQWLLDKGAAVTAVDFSAGMIEMTRKRVGERAEIIRADLNEPLD FMAKESCDIVLSSLALHYLKDWTLVMSEFHRILAKGGLLIFSVHHPFMDFTVFQRDNY FLTELLDDEWETQKGKVKVQFYRRPLSQILSAVLEAGFLLEKVLEPMPTEEFKSAQPD AYRRLTYKPQFLFLRARKP" gene 2333963..2334904 /locus_tag="Dhaf_2167" /db_xref="GeneID:7259136" CDS 2333963..2334904 /locus_tag="Dhaf_2167" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: lsp:Bsph_4470 putative transport protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002458637.1" /db_xref="GI:219668202" /db_xref="InterPro:IPR000620" /db_xref="InterPro:IPR004853" /db_xref="GeneID:7259136" /translation="MAEKRMAYLAAIIYAFIIGLSFMFVKLTLTVATPLDTLAHRFTV AFLAATLFIFFTKHKVNIGWHDVAQIAPLATLYPILFFGFQIFGLARTTSSEAGIIQS TVPIFTLLLAVFILKEKVGRGQLISVFLSVFGVIYLLAMSGAESQTANIVGSVLIILS AFTNALYNVLARRLTQRYSLLTLTYIMTLFGFIAFNSLAIGSRVLAGTVGEFFQPLLH WQFVVAVLYLGILSSLVTSFLANFVLSKIEAAKMSVFSNVATLITILAGILFLQEAFH FYHVIGGMMIITGVVGTNLMGARSKAKEKAKTKDVEE" gene 2334901..2336619 /locus_tag="Dhaf_2168" /db_xref="GeneID:7259137" CDS 2334901..2336619 /locus_tag="Dhaf_2168" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3309 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458638.1" /db_xref="GI:219668203" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259137" /translation="MTLYYNYLGKYKIPFLIAVLCVTLEAVCDLLGPTLMARIINQGI EKGSLAEVYYWGALMLAVTLLGACFAVTRSNLSSYVSQRMGGDLRADLFGKIISFAEQ SGDKIDGGSLITRMTNDTSQIVQFVNGMMRIFLKAPLTGIGSVILASWLNFRLSLIIY GVVAVVSLLIYASMKFSYPRFYQLQKAVDRVNLKVQEYLIGIRLVKAFGTYEQETEKF AEANRELMQKGISSQMVITVISPFLTLVVGTGTAAVIFLGSRLFMLDLADLGDMMAFT IYMAQILTSLIMLTTVFTTFVRTKASMERIGEVLDCAEDFPPSGAGRKLQGKITFDKV TFAYPNGSGVPAIRELSFTVNPGGSLAIIGPTGSGKSTIAWLLLRFYDADRGRIMLDD YPIQELGADEIRHNIAIVPQKPLLFSGTVAENLRWGDKQASPEELRQAAEKAQADFIG QMAEGYDSLLGSEGVNLSGGQKQRLSLARAILKKAPILILDDATSALDAVTEAKVREN LKHNDYRQTLVMITQRCGTAMSADQILVMENGRPAGLGSHEELMRTCAIYQDIYHTQL ESSREA" gene 2336623..2338485 /locus_tag="Dhaf_2169" /db_xref="GeneID:7259138" CDS 2336623..2338485 /locus_tag="Dhaf_2169" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3308 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458639.1" /db_xref="GI:219668204" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259138" /translation="MAGGFRTQQPKAPALVNRPGAGNRFVPAAKPKNTKGTLGRIVKI YLRWAKSIFAVILLTAASSLVAVAIPYYVGQTFNTFHIADRSVDTARLVSLLLIILSL YLGNLLLNLLNGTMTLRISQKLVYTLRQEFFAKMQRLPLGFYDTRSHGDTMSRITNDM DNISSTIAQTTTQLIASILTLAGSLAVMLSLNVPLTLVVLLCVPLVFVLTKTIATRSR AYFLAQQGSLGALNGVIEENILGLKMVKAFNRQEEVLRQFQEINQGLRASSYKAQVWS GCMMPLMNVINNLVFAAVAICGGILTLSQGLAVGTVVSFLTYSKQFAHPLNSVAGMFN TIQSALAGAERVFEILDYEEERADEENALEMEHPAGAVTFDEVSFSYDKTQPILKEVS FQVNPGEVVALVGETGAGKTTIVNLLTRFYDADSGEIRIDGVPVTRIKRASLRRCFSV VLQDTSLFSGTIMDNIRYGKEDATEEEVIRAAQIAHAHGFITKLPQGYGTRVSAANDN LSQGQKQLISIARALLCDSPILILDEATSSVDTKTEKDIQKALVSLMQNRTSFLIAHR LSTIRDADRIMVIGEGQILESGNHQSLMEKQGRYYEMVMSQLGSQMAKSFSLKA" gene complement(2338452..2339258) /locus_tag="Dhaf_2170" /db_xref="GeneID:7259139" CDS complement(2338452..2339258) /locus_tag="Dhaf_2170" /inference="similar to AA sequence:KEGG:BcerKBAB4_3278" /note="KEGG: bwe:BcerKBAB4_3278 ABC transporter, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter, permease component" /protein_id="YP_002458640.1" /db_xref="GI:219668205" /db_xref="GeneID:7259139" /translation="MNRALFRAMIKQNRKKIAKLAAGIVLYETLLTWVYPVIAENSAV TQLTDSIPSAVKTVFGVAEEARVDTFEAFISAQFLARIWAMLMSLYNVETANELLAKL ADDGSLALLLSTPVPRGDYLLTQALVLFSGNALLVLATLLGLCGGAYRFGITIDSWRY CRFGLLSLAFYSLIGAYSLFFSALTAQEDLDLTLAAGTTLTFYALDVAGGLSEQHSWL RRLSLFQCYQPQEVLEGTSDPARKIIGLTAGSVILLQLGIYAFNEKDLAI" gene complement(2339255..2340154) /locus_tag="Dhaf_2171" /db_xref="GeneID:7259140" CDS complement(2339255..2340154) /locus_tag="Dhaf_2171" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC3591 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458641.1" /db_xref="GI:219668206" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259140" /translation="MLEVSELTKSYHEVRGVKNLSFQVESGTALGLLGPNGAGKTTTI RLLMGFMKPDLGSASIWGLDCWRDRAELKEITGYLPGELHFMEQFTGQEFLDLIEGMH GTQQTIRKRQKDLLRALELDPKQRIRKMSKGMKQKLGIIAALMLDAPVLILDEPSSGL DPLMQKTFIELILEEKKREKTIFMSSHHFAEIERTCERVGMIRDGELLAIQDITQLKQ KERQTFDIEVSGEEDAELLRQSGLTLYPLDHLKFTIQVTGEQELLWKTLAQIRVRRFQ QGSLELEEAFMHYYHSSLRGDST" gene 2340372..2340698 /locus_tag="Dhaf_2172" /db_xref="GeneID:7259141" CDS 2340372..2340698 /locus_tag="Dhaf_2172" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: cpy:Cphy_2071 PadR-like family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002458642.1" /db_xref="GI:219668207" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7259141" /translation="MLKGVLDGIVLEIISRGEIYGYEIARQLHAMGFKDLAEATVYAL LLRLEKNKLVHITRKPSEMGPPRKFYTLNERGVEELAAYWARWDFLSERIHILRNNGG KSNELQ" gene 2340685..2341266 /locus_tag="Dhaf_2173" /db_xref="GeneID:7259142" CDS 2340685..2341266 /locus_tag="Dhaf_2173" /inference="similar to AA sequence:KEGG:Cphy_2072" /note="KEGG: cpy:Cphy_2072 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458643.1" /db_xref="GI:219668208" /db_xref="GeneID:7259142" /translation="MSFSKEIREKIRRFAEEQSQHYLEEAEMTYLEKLRRKTGETKSK VTAKLAKLKNRSGTALEAQNDMILYMSDYMNDLIAEGYSEQDAFKQAKEELRFRSETA KSSDLQERFAEYYANMNPADYEAVGLFYAGFLFFGIAIGALTGFISSGGREMFMAGGW IDTLIGAAVGITIGIGLGLISHAIIALKKKLPS" gene 2341358..2342332 /locus_tag="Dhaf_2174" /db_xref="GeneID:7259143" CDS 2341358..2342332 /locus_tag="Dhaf_2174" /EC_number="3.4.16.4" /inference="protein motif:PRIAM:3.4.16.4" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ckl:CKL_0025 predicted D-alanyl-D-alanine carboxypeptidase precursor" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_002458644.1" /db_xref="GI:219668209" /db_xref="InterPro:IPR001967" /db_xref="GeneID:7259143" /translation="MAQRPRRKKRKSKPPMLLLLLLLVVIAVLGYKYLPESQQLAEKI SGDRTGTVSQLKPETRPTSLSVGRLNSSQAILVRLKDQKILMGKGSEEKIYPASLTKI MTAILAIENLPNLQEKIRLSQATFQGLYQANASMTGFQPEEQVSVMDLLYGVMLPSGA ESCVGLAERIAGSERKFALLMNQKAAELGMNHTHFENATGLHAENHYTTVKDLAVLLS YALQNDLFREVFTASRHSTPPTNKHPGGITFYSTMFSVLGSSKIAGGEILGGKTGYTD EAGLCLASLAQVGKEQYILITAGAKGNHDSEQYNVSDALAVYNSLGKE" sig_peptide 2341358..2341450 /locus_tag="Dhaf_2174" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.647 at residue 31" gene 2342503..2343186 /locus_tag="Dhaf_2175" /db_xref="GeneID:7259144" CDS 2342503..2343186 /locus_tag="Dhaf_2175" /inference="similar to AA sequence:KEGG:CTC01414" /note="KEGG: ctc:CTC01414 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458645.1" /db_xref="GI:219668210" /db_xref="GeneID:7259144" /translation="MQTEIKKQMQELAEEEYRVFSSGLLPNIGNILGVRLPLLRKMAK QITKADWREYLKTAREDSFEEIMLQGMVIGCAQCSAPERLAYIQGFVPKIDNWSVCDS FCNGLNFTKENKELVWEFLQPYLRSEREFEIRFGVVMLLTYYSDQEYIKAVLEGLDGI RHEGYYVKMAVAWAISICYIKLPEETLPYLQHNHLDDFTYNKALQKITESYRVDQETK KQIRLMKRR" gene 2343183..2344136 /locus_tag="Dhaf_2176" /db_xref="GeneID:7259145" CDS 2343183..2344136 /locus_tag="Dhaf_2176" /inference="protein motif:PFAM:PF08902" /note="PFAM: Domain of unknown function DUF1848; KEGG: tex:Teth514_1205 hypothetical protein" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1848" /protein_id="YP_002458646.1" /db_xref="GI:219668211" /db_xref="InterPro:IPR014998" /db_xref="GeneID:7259145" /translation="MIISASRRTDIPAFYSQWLLNRLQEGYVLVPNPRNPSRYSRVEL NPQVVDCLVFWTKNPSPMLPRLAEIVALGYPFYFQFTLTPYDRDLEQNLPPKETLLNI FQKLSAMLGPERVVWRYDPVILTPELGLDLEYHLRQFERMAAALAGYTQRCIFSFLDM YPKVGRAMSLALAQEAKEADETAMGRIAEGFSAIARKHDLDLFTCCEPVKLSQYGIKH ASCIDQGMIEEILKCKIQVKKDPNQRPSCGCIESVEIGTYDSCPHGCLYCYGTSSPKT VRSNIARHDPKSPVLIGALPQNAIITERKMCSRKDAQLTLF" gene 2344352..2345833 /locus_tag="Dhaf_2177" /db_xref="GeneID:7259146" CDS 2344352..2345833 /locus_tag="Dhaf_2177" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC01155 methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002458647.1" /db_xref="GI:219668212" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7259146" /translation="MNFFKKAPCEEALCVIKSVEDRLNGLEVELPDVQYPIHQNLVKI FEKLLASEEHMSKSSKKMIGLTSALSNFDVEMTHSSHKLIEFAREMSTISESNLAIVE EISASMSEVNDTIGNTSEVMNSLQESSRALVLKNDESIARIEEIDVLKNDVSKDAALM SEQIKVLVEMAVKVNEIVDGVENIANQTNLLALNAAIEAARAGEAGKGFAVVADEVRK LADSTKTSLGNMRSFVNNIQQAAVSGQSSMENTMNSTAKMHTKLDMISQTIIENVSML KNTISDVDLITESLGHIKESASQINQAMEASTQDAEKLNLMTQRIQDDATQSADNAKE IARIDDELSGLVREMITALNGGKNAVSNQELLENISKAKAAHANWIKNLSRIVEEMTT YPLQTNSKKCAFGHFYHSMDVSGTVLEDAWRAIDQVHDEFHTSGSKVIEAVKENKPEL ARNLFLHTKELSQNIFAKLDEVTHIIEGSAAQGVEILRTSKAS" repeat_region complement(2346028..2349230) /note="CRISPRs" /rpt_unit_range=2346028..2346061 gene complement(2349307..2349543) /locus_tag="Dhaf_2178" /db_xref="GeneID:7259147" CDS complement(2349307..2349543) /locus_tag="Dhaf_2178" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458648.1" /db_xref="GI:219668213" /db_xref="GeneID:7259147" /translation="MDKLDIILERLNILDRIESDIKALKADNRETYKKLDKLDEISAK QEMTWQAVKELRDDKTEINELRRRIEILESKIAM" gene 2349766..2350344 /locus_tag="Dhaf_2179" /db_xref="GeneID:7259148" CDS 2349766..2350344 /locus_tag="Dhaf_2179" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cdf:CD2615 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458649.1" /db_xref="GI:219668214" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7259148" /translation="MTDKKEAAEQPIDMRRHILTVAGGLMIEKGVKETSLKDIAQEAG ISKGTLYYYYSAKEDIIYDIANHNLKQITDGLLAWIEDANTEVAPEEVLKTVFEQILG AETRGKLHLYLLSDAGTSNTLLKEKFKEQYQEWRKTLQYGLDKILPSQNQKNVMLSYL ILAALDGLIIQRLFGTEEIPVQEIVKLLVNAE" gene 2350393..2351610 /locus_tag="Dhaf_2180" /db_xref="GeneID:7259149" CDS 2350393..2351610 /locus_tag="Dhaf_2180" /inference="protein motif:PFAM:PF00465" /note="PFAM: iron-containing alcohol dehydrogenase; KEGG: cac:CA_P0059 alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_002458650.1" /db_xref="GI:219668215" /db_xref="InterPro:IPR001670" /db_xref="GeneID:7259149" /translation="MNTLYCRLYQRTLQLASYFLPWRKPTLLEGANSLNKLPEVISRK GISKILIVTDQGISSLGLVNSFLQDLDKAGVRYTVYDKTVPNPTLDNIEEALKLYQEQ QCEGIVAFGGGSPMDCAKGVGARVANPHKSISQMKGVLKVRRKLPPLFAIPTTAGTGS EATLAAVISDPRNREKYPVNDTALIPHYAVLDPLLTVGLPKHITSTTGLDALTHAVEA YIGRSNTQETTELSRKAVRLIFDNLYIAYSQGENVKARENMLKASYYAGVAFTRAYVG YIHALAHALGGFYGVPHGLANAVILPCVLEYYGEAVHERLAELADVLEMGSPGDSHEQ KATLFIEAIKELSKKMNIPRKIDGILAEDIPLLVEHAWKEATPLYPVPRLLSRNDLNN ILNLIGSAQKEEV" gene 2351612..2352982 /locus_tag="Dhaf_2181" /db_xref="GeneID:7259150" CDS 2351612..2352982 /locus_tag="Dhaf_2181" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde Dehydrogenase; KEGG: cbf:CLI_1188 aldehyde dehydrogenase family protein" /codon_start=1 /transl_table=11 /product="Aldehyde Dehydrogenase" /protein_id="YP_002458651.1" /db_xref="GI:219668216" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7259150" /translation="MPDIKEILVKQKAFFQTGKTKELQFRVDMLNKLRSAIKIHEEEI MAALKADLNKAPFEAYATEVGMVLEELNYTLKHISSWVKPKRVRTPLVHFPSASYLYT EPYGSVLIMSPWNYPFQLALAPLVGAISAGNCAVLKPSEYSANTSAMIERIVKEIFDE SFVAVVRGGREANKTLLNEKFDYIFFTGSVGVGKTVMESAARHLTPVTLELGGKSPCI IDDTADLELAAKRIVWGKFLNAGQTCVAPDYLLVHRTVKEKLIQEIKKSITAFYGHDP LGNEDYPKIINQKHFERLLGLLKSGRVVEGGRSDEKTRRIAPTILDDVTWESPVMQEE IFGPLLPVLEFESFDAALAMVNQHPKPLALYLFTRSKDHEAQAISKTSFGGGCINDTI IHLANPNLRFGGVGESGMGQYHGKGSYDTFSHTKSIMKKSNKLDIPLRYPPFRNHLSL LKKLMK" gene complement(2353242..2353403) /locus_tag="Dhaf_2182" /db_xref="GeneID:7259151" CDS complement(2353242..2353403) /locus_tag="Dhaf_2182" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458652.1" /db_xref="GI:219668217" /db_xref="GeneID:7259151" /translation="MIKCCTEILLNILNYNLNRISDIRRLRAENAKLVQLVIDQALHI QMLRYIIRK" gene 2353766..2354440 /locus_tag="Dhaf_2183" /db_xref="GeneID:7259152" CDS 2353766..2354440 /locus_tag="Dhaf_2183" /inference="protein motif:TFAM:TIGR02593" /note="TIGRFAM: CRISPR-associated protein Cas5; KEGG: pvi:Cvib_1301 CRISPR-associated RAMP Csd5d family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas5" /protein_id="YP_002458653.1" /db_xref="GI:219668218" /db_xref="InterPro:IPR013422" /db_xref="GeneID:7259152" /translation="MVRLSYPIAMEIAGNTAMWTRPDSGDCPVSYPAPTYSAVKAIFE SVAWGPGVEIIPTKVELCAPIQYHSYCTNYGGPLRSTKSIKEGNNYQLYATVLIDVCY RLYAEVVPYKDKSRLPESAVQWDKKTTSPGHAYQSIFNRRLKRGQCYSIPTLGWKEFT PSYFGEFRDTTQVLSDALPIVIPSMLRRVFAKGYGSPVSYVYDNDLVIRNGVLEYPQR SENYAQ" gene 2354430..2356559 /locus_tag="Dhaf_2184" /db_xref="GeneID:7259153" CDS 2354430..2356559 /locus_tag="Dhaf_2184" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458654.1" /db_xref="GI:219668219" /db_xref="GeneID:7259153" /translation="MLNELYSLSTAMKSKGISAKEWHREYKSLPKVTAKSPCIRIWLA QDGSICGLESISAELAQSLRKYGNNQGTFPAFNIAPLYRITEEEQLTELEQIEKGTIP LDLDKIKSWCVHDNWKGSIVKKVDRSLHTIPQTLSGLIGNQEQPEGRLISKLIQLASG FRNEPDKSFKSALEKCVFAKLQKQEDIGTLLTVLFHKGNPKKEHNDDTGSISVVLDLF DWQQYGYPVTSQHFTEWLNDMLLKSSSRSASQPSKDVERDAFGIPFINPDEPMPSVKL SGFEVTLRSMFNGQPCQYRYEQIDDGSYPIAMENRSLIKKSLEWAADLEREGITWRKI DKSEIVFAYPSKLLEISPKFVSIFGSGQAENSARAEARFENIAKDFIRTLRGLLPEET PKFIQIFTIRKLDKARSKVIFTRNCSPDQLIQAAEDWQAGCGNIPETELGKRETPFPL QVARIVNNVWKQNGELAQGQTAVERMKYYQGMELLLDPMQENMIGNYLHVTLTHSSGL VSYIGNWVHGGSSCKSKTEEKALEKLKNEAALLLDVLGLLLYKRGERKEKYMENMAYL VGQLLKISDELHTLYCKVVRGGDVPPQLAGSALFAAAGERPYQTIAQLSLRMNPYITW AKHYRFKNISTKDEESWRARWYLNLYEDAANKLLPAMTDSTRFNDFEKAQLFIGYLAS FPRRGSSVTVADESDNDNNVGGANYEQ" gene 2356549..2357433 /locus_tag="Dhaf_2185" /db_xref="GeneID:7259154" CDS 2356549..2357433 /locus_tag="Dhaf_2185" /inference="protein motif:PFAM:PF05107" /note="PFAM: CRISPR-associated protein TM1801; KEGG: esi:Exig_0150 CRISPR-associated Csd2 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein TM1801" /protein_id="YP_002458655.1" /db_xref="GI:219668220" /db_xref="InterPro:IPR006482" /db_xref="GeneID:7259154" /translation="MNSEIKRATGLMVIEVVNSNANGDPDRESDPRQRPNGIGEISPV SFKRKLRDLVGDHDSVFYQNLPEVYVKNSDHYCILESRGRDRKSIQSEMSKDIKNFEQ KSFLESTFVKKYWDARIFGNTFLEEGANKGFIKTGVVQFGVGTSISPVNIIRHTNTNK AGVQEGKNAGMAPLAFRIVEHGVYCMPFFVNPNYAAKTGCTQEDIDLLKLLIPKAYDL NRSAIRPDVRIRHAWYIEHLNALGSCPDYLLLEALTPKRIGDVTIASKSWADYEDKTD LPEELKAKVSSATDLMLV" gene 2357430..2359619 /locus_tag="Dhaf_2186" /db_xref="GeneID:7259155" CDS 2357430..2359619 /locus_tag="Dhaf_2186" /inference="protein motif:TFAM:TIGR01596" /note="TIGRFAM: CRISPR-associated HD domain protein; KEGG: tth:TT_P0132 hypothetical protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated HD domain protein" /protein_id="YP_002458656.1" /db_xref="GI:219668221" /db_xref="InterPro:IPR006483" /db_xref="GeneID:7259155" /translation="MIYYAHSRKDDIPEQTYAEHVCGVRSWGRDYVQEISCYAKCDNT LLSQIIEKASTIHDLGKLNKKNQDVLAGREQDEKLPVHHWDAGAAYFLRNSHLSVFSA AVIQAHHKGFPDFTVEVERDDAAFRDRAIASEVDKELPELEAIHNNLVDSRFEYDREE IKGDKSVFLRMLLSCLVDADHTDTAIHYRKYPAEMSPVRLRAAERLAQLDRHIAGLKQ TGADDARNALRNEMYLACRNADIDAGITSCDSPVGSGKTTAIMAHLLAQAEKRGLRRI FVVLPFTNIIKQSVDIYRKTLVLPGENAEEVVAELHHRADFESKDARHLTALWRAPII VTTAVAFFETLASNSTAALRRLHELPGSAVFVDESHAALPAKLLPIAWKWINVYAAEW NCYWVLASGSLNRFWTIPEIIGNESFHPVPEIIDDELRKRLAVYENNRISYHCDLFPK GTAELAQWISGFPGPRLVILNTVQSAAVLADYFSEHFGRECVEHLSTALTPNDRSNTL ERIKKRLMDKKDTNWTLIATSCIEAGVNLSFRTGFRELGALVSLLQASGRVNREGVLD NAEMWTFCILEDGMLRLNPGLKEAAAVLKRFFEGNSAIVPELSTQSLTDEIALYGLSG KHRNLVTNEKLQNFRKVEEDFKVIDSDTRLVVVDPSMAKRLQYGKVDWKELQKVSVQI AKYKLDELRTPMIMDKIYRWNLEYDGFLGYMAGIVKLKKYSGGAIII" gene 2359673..2360344 /locus_tag="Dhaf_2187" /db_xref="GeneID:7259156" CDS 2359673..2360344 /locus_tag="Dhaf_2187" /inference="protein motif:TFAM:TIGR00372" /note="TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: amt:Amet_1666 CRISPR-associated Cas4 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas4" /protein_id="YP_002458657.1" /db_xref="GI:219668222" /db_xref="InterPro:IPR002785" /db_xref="InterPro:IPR013343" /db_xref="GeneID:7259156" /translation="MEYQEDDFLLLSGIQHYVFCKRQWALIHIEQQWQENFRTIEGAI LHEKTHDSTIKEKRGALIISRGMGIFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQ PVPVEYKRGKPKQDNADVLQLCAQAMCLEEMLLCTIPEGFLYYGEPRRRTKVILDEEI REEVKRICQEMHELYAKRYTPKVKTTKACRACSLSEICLPKLCKNPSALDYMKKMIAE IEVEP" gene 2360341..2361372 /locus_tag="Dhaf_2188" /db_xref="GeneID:7259157" CDS 2360341..2361372 /locus_tag="Dhaf_2188" /inference="protein motif:TFAM:TIGR00287" /note="TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: amt:Amet_1667 CRISPR-associated Cas1 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas1" /protein_id="YP_002458658.1" /db_xref="GI:219668223" /db_xref="InterPro:IPR002729" /db_xref="GeneID:7259157" /translation="MRKLLNTLYVTSPNTYLSLDGENIVILKDDVEALRVPLHNLESI IAFGYTGASPALMGACAKRNISLSFMKSNGKFLGRVVGEVRGNVTLRKAQYRLSDDEA TSHRIAKSFILGKVYNSRWVVERATRDHGARLDVEKLKGVCQTLANALRLVENSKDLD QLRGVEGEAAAQYFRVLDDLILQQKEDFYFKCRNKRPPLDNVNAMLSFIYTLLAHDAA AALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVFADRFVLSLINRREVNPSGFTR MENGAVVMDDDTRRDILKAWQSRKQEEIKHPFLQEKMEWGLVPYAQAMLLARFIRGDL DGYPAFMWK" gene 2361373..2361672 /locus_tag="Dhaf_2189" /db_xref="GeneID:7259158" CDS 2361373..2361672 /locus_tag="Dhaf_2189" /inference="protein motif:TFAM:TIGR01573" /note="TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: amt:Amet_1668 CRISPR-associated Cas2 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas2" /protein_id="YP_002458659.1" /db_xref="GI:219668224" /db_xref="InterPro:IPR003799" /db_xref="GeneID:7259158" /translation="MREILVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFEC VLDAAKFREVQHKLEQIIDTETDSLRFYMLGNNYKNKVEHIGAKPSFNVEDTLII" repeat_region complement(2361841..2365712) /note="CRISPRs" /rpt_unit_range=2361841..2361874 gene complement(2365975..2367000) /locus_tag="Dhaf_2190" /db_xref="GeneID:7259159" CDS complement(2365975..2367000) /locus_tag="Dhaf_2190" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bat:BAS2620 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458660.1" /db_xref="GI:219668225" /db_xref="GeneID:7259159" /translation="MDNLIERYVYDVTRRLPEKDREEVSKELKSNIYDMLPENADENE RKMVLYNLGSPASLAEKYRQKPRYLISPAVYEDYVRVLKWVLPLVGVVVLVIGMILGA IDAIKDGMVDLPYLISNTLSKGIVMGISAVFQALIWTTVGFVIADRTGAKANKSKEQE WRVEDLPDALPDDRGKIKLSDSIAELVLTGVFSVLGILICRGVLPVAFVIQNGDTQIR TLFSPSFLASCVPAIAVMAILAVGACIFKIKVRRWTPIVCGAVVISTIINMCIMIYLL NRPDLFSTEFTAFLQSIDWGSFDPLGFMGVGGANLFIVFIAIVVVVCSLAECGQAIYK TLKYKIQ" gene complement(2366993..2367340) /locus_tag="Dhaf_2191" /db_xref="GeneID:7259160" CDS complement(2366993..2367340) /locus_tag="Dhaf_2191" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: ckl:CKL_2542 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002458661.1" /db_xref="GI:219668226" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7259160" /translation="MSANEQMQNFITELRRGSLTLAVLGCLKQPHYGYALLQTMQEKQ IDVEANTLYPLLRRLENQGLLVSDWDTSESRPRKYYTVNEKGEMVYRELMTEWKKLQS NIESICGEDKCNG" gene 2367676..2369553 /locus_tag="Dhaf_2192" /db_xref="GeneID:7259161" CDS 2367676..2369553 /locus_tag="Dhaf_2192" /inference="protein motif:PFAM:PF01757" /note="PFAM: acyltransferase 3; KEGG: bwe:BcerKBAB4_5518 acyltransferase 3" /codon_start=1 /transl_table=11 /product="acyltransferase 3" /protein_id="YP_002458662.1" /db_xref="GI:219668227" /db_xref="InterPro:IPR001226" /db_xref="InterPro:IPR002656" /db_xref="GeneID:7259161" /translation="MRTVDHGYMPGLDGLRALAVFAVIFYHLNLSWAPGGLLGVTLFF VLSGYLITNILLKQWESTGTIDLKDFWLRRARRLLPAVFVMLAGVMVWMLLFAPERLA ALKQEALAAVFYISNWYLIFHQVSYFESFGPPSPLGHLWSLAVEEQFYLLWPLLLGLG LRWIRQRKWLAVGTIALTFASAAAMALIYSPGQDPSRVYYGTDTRAFSLLVGAALAMV WPSGKMTGELTGSKKLLLDGTGALGLLAVLLMILKTNQYQPFLYQGGLLLFSIAAAVL VAVLAHPASSLGRFFSWGPWRWLGECSYGIYLWHYPVIILTNPAVNTGGVDLSRTFWQ IGLSIILAVLSRHFIEDPIRYGRRKRGRRRVPALQWWQKPLGVGAKMSLGILLMVLLL FVTPNGGTGISAKAIAQNHETTEQAQGQAQEQAQNQNQAQSQTQTQNQDEQGTQAQGA EQEDNKANGEAIGTEQENEITIIGDSVMINVTPVLQEQFKGIVIDAQLGRQMYQAPEV IAGLREEGKLGKTVVIQLGNNGPFSEKQLKETLDTLPGSTEILLVNTRVPKPWEGEVN ETLNKVAQSYPGARLIDWHTVSKGHNDYFYKDGVHLTQTGVEAYGEMLVKALAVGEND Y" gene 2369614..2370327 /locus_tag="Dhaf_2193" /db_xref="GeneID:7259162" CDS 2369614..2370327 /locus_tag="Dhaf_2193" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aoe:Clos_0095 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458663.1" /db_xref="GI:219668228" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259162" /translation="MREKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALAL LTEFLPDLVVLDLMLPGIDGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADD YMVKPFNPFELIARIKAMLRRRDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPT EYSLLKMFMENPGKALRREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYI KTIWGSGYRWQPEMVRRLP" gene 2370324..2371718 /locus_tag="Dhaf_2194" /db_xref="GeneID:7259163" CDS 2370324..2371718 /locus_tag="Dhaf_2194" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aoe:Clos_0096 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458664.1" /db_xref="GI:219668229" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259163" /translation="MKGIRGRLTANFMIVILVSVAILEVLLIYTVQQNYYGSLRGNLT NQVKISADMYSKYYSDTSLEDNILYNVDAFWNQSNAQVEIVDRDGKIVMDSLGAISEQ EGPTEDIQDALNDQMGEWIGKLNGQKVMAVAYPLKSEGEIVGALRFIASTHEIDQDIQ DTAKIFIAIGLFVAMVVGFLSIFLANTILIPLKEVTAIAESMAAGNFQIKSRKKRDDE IGKLADTLNYMAEEITKKEKLKNDFISSVSHELRTPLTSIMGWAITLQSEKFQQKEML NDGLGIIAKESERLTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHIRKQLTPRATR ETIQFTVDYPENLPDLLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEVGEKDYTFT ISDNGCGIAAGELPMVKEKFYKGKSSRSRNGIGLSICEEIITLMKGRLEIHSEVNVGT TVVITLPREVCAHG" gene 2371711..2373198 /locus_tag="Dhaf_2195" /db_xref="GeneID:7259164" CDS 2371711..2373198 /locus_tag="Dhaf_2195" /inference="similar to AA sequence:KEGG:Clos_0097" /note="KEGG: aoe:Clos_0097 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458665.1" /db_xref="GI:219668230" /db_xref="GeneID:7259164" /translation="MVKKSLLLPLAFLLLFLGGCAEFSGASAGKIIPPSAQVSPLGGK WTVLEELDSNGSEGGAGQPWLGSDVQFAPGVVSFGGHVWDNPAYKIKRVKAEDYLLTK YIPSVGSSGLKSQKVDVITVYASGNYLGEFMKLDDTSMIFFVENKALLLKIVAEEADS TLVAGDTSAQELNQDSREGISGVLLGLRIPAATGYTYQTLWIAADHQQLRPILASEQI FFPRTSGFWELSVQNLPADGMTDNLLTARNVTAKAPDLKRENGEREGGAGTEEQPNAE AERVINYIGNDYIAMEKRTAGINHLQVLPVDKLLSPTEIKVSDLLGDKGFNAYLNARE QAAAALREKGITSVSQDESGENFGLIRKNGRWSLVGRIHYQSGGNLEYKDFDLKIIPP ANLIFYDALVLSWYNIKDRVPDATDAFTSPNRDIALVKTKTKLTIYPIGTDKLGETHL AELELPEGATVIMAEWATGSYVDSWEKSFLAYGAQALADGSVRMR" sig_peptide 2371711..2371797 /locus_tag="Dhaf_2195" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.403 at residue 29" gene 2373399..2374685 /locus_tag="Dhaf_2196" /db_xref="GeneID:7259165" CDS 2373399..2374685 /locus_tag="Dhaf_2196" /inference="protein motif:PFAM:PF06354" /note="PFAM: protein of unknown function DUF1063; KEGG: cbt:CLH_1338 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1063" /protein_id="YP_002458666.1" /db_xref="GI:219668231" /db_xref="InterPro:IPR010469" /db_xref="GeneID:7259165" /translation="MERQDRYYQTYLNILKEELVAAMGCTEPIAIAYGAAKAREVLGA VPHKVVLEVSSNIIKNVKSVVVPNTDGLKGIEAATAAGIIAGRSDKILEVIAEVCQAE KQQIKTYLSETDIEVKLADSQIIFDIMITMFHQDSYVKLRIADYHTHIVHIEKNGEII FGTGDLDAGISSLTDRKLLSVSKIIEFADSVRIEDVKELLDKQIEYNSAIARAGMEGN YGANVGRVLLKTYGNDVKIRAKAMAAAGSDARMSGCELPVIINSGSGNQGMTASLPVI EYAAELQSGEEKLYRALVVSNLITLHLKTGIGRLSAFCGVICAGCGSGAGIAYLHGGG YDEIAHTIVNAAAIVSGIVCDGAKPSCAGKIAAAVDAGILGYLMYKEGQQFRGGDGIV AKGIENTIANIGYLGKVGMKETDKEIINIMLNQCSS" gene 2374915..2376537 /locus_tag="Dhaf_2197" /db_xref="GeneID:7259166" CDS 2374915..2376537 /locus_tag="Dhaf_2197" /inference="protein motif:PFAM:PF07905" /note="PFAM: purine catabolism PurC domain protein; KEGG: lmo:lmo0455 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PucR family" /protein_id="YP_002458667.1" /db_xref="GI:219668232" /db_xref="InterPro:IPR012914" /db_xref="GeneID:7259166" /translation="MSITVEDCLQLSVLREAEVVAGAKGLNNIVAHVSVLEWSNSLAL KNGIFLGNEIVITCFHYAKDDVDAQCQVVRDLSAAGEVGMILYYVGIVLPDIDARLIR TADELGYPLICMPRNRFDYRYSEAITEIMEAVFKDQMKEKYYVKDMLERLAMLPERQR TIGNVLRMLSDRLYCSIILCDREFKLLDAATWPTTANLNLPEILNLYKNTVLSRPGVN NLEFTYDNEVMAARSQPIATDDGYSMNLIFLNLPEKKVLGDAIAQAAELIQLSSSIWN FDIRQEGHREMLKAFFYDEPIKLKRIANGLHIDIDRLQTMWVLKSKADSPTREALTLK NSRLLALLKHFFNEHHIHAIADHFEDNVVALIEPPYGETTMTSFLEEFMKTVQDESVR AFPVNCPGENAAGAFRKAYFEIQDNDGSAMTIYPSKRIINTHEIEFSGLCREIAEKGK EAIDEKLKVLRALGAQDDFAGKELVSTLEVFLLDAEANVEQTSKLLFLHKSTIKYRIK KIKELLGCDIAKLPEAYSLYVAVAVKRLIASL" gene 2376750..2378087 /locus_tag="Dhaf_2198" /db_xref="GeneID:7259167" CDS 2376750..2378087 /locus_tag="Dhaf_2198" /inference="protein motif:PFAM:PF02133" /note="PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: drm:Dred_1545 permease for cytosine/purines, uracil, thiamine, allantoin" /codon_start=1 /transl_table=11 /product="permease for cytosine/purines uracil thiamine allantoin" /protein_id="YP_002458668.1" /db_xref="GI:219668233" /db_xref="InterPro:IPR001248" /db_xref="GeneID:7259167" /translation="MSETTQNTSHDDYSLSRVPQHAKKPLWQIIVIRLGCFACVSQLM TGAALGFGMSFHDALLAVFLGSIALLIVGAAVGVIAAQQGLSTSLLARWSGFGNQGSA LIGVIIAISSIGWFGMQNTVFAEGMYQATGILNLQIWSVLTGASIIAIVYFGISSLSW TANIALPLFLVAIGISSIQMFRGHSLTDLIASPIPGPALSLATGATMVAGSFIIGAVI SPDICRFLKRGRDVFWMTLISTFVGELSMCMLAVLMAHAIKSADVMTIIVSLSGLIGV IIVIFSTIKVNDINLYAASLGMTNALNALFKKDFDRRQMTIILGVFGTALSVIGVINY FENFLVVLGVAIPPIAGIISIDYFILKRDRKILDESKERGELPDKVENWNPVAILAWA VGSLVGYFVQIGIPSINSLIVSGLLYYGAMKVYGLIQKKEIVRFRMVDSQSEG" gene 2378160..2379329 /locus_tag="Dhaf_2199" /db_xref="GeneID:7259168" CDS 2378160..2379329 /locus_tag="Dhaf_2199" /inference="protein motif:TFAM:TIGR01883" /note="TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bld:BLi02571 YqjE" /codon_start=1 /transl_table=11 /product="peptidase T-like protein" /protein_id="YP_002458669.1" /db_xref="GI:219668234" /db_xref="InterPro:IPR001261" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010162" /db_xref="InterPro:IPR011650" /db_xref="GeneID:7259168" /translation="MNRWINEKRLIASFCDLVTIDSLSYRERDMADELLRRLKRLGFE VWEDDAGPKIGGSAGNIIAKLKGIVEKEALLFTAHMDTVQPGTAKTPLLSGKRIHTDG TTVLGGDDAAGIACILEMAASLREHKLDHGDIYVIFTVAEEMGLQGAKNLNPAVMEKV KANYGFVLDDAGKAGGVVAAAPAHVKRHITIRGKSAHAGVEPEKGIDAVRIMAEAVYH MQLGRLDEETTANLGMIKGGEAGNTVCGQLEILGEVRSRNPEKLAKQLKAMQRCFEEA ARNWGGAVEFEDELLYGAIDLRRHPDLQKLLEKAAEKIGLPMDYHSSGGGSDANILNS LGFPCVTLSSAFYAMHTVQEYVDIEEMIRLTEFMLSITQSVEAVEKAGVRNLTTE" gene 2379345..2379860 /locus_tag="Dhaf_2200" /db_xref="GeneID:7259169" CDS 2379345..2379860 /locus_tag="Dhaf_2200" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: fgenesh4_pg.C_scaffold_10837000001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458670.1" /db_xref="GI:219668235" /db_xref="GeneID:7259169" /translation="MGLFSEMLDEKRIKDGFKDSGHVLMITCPGCACESLSYTEGLPC RALESGKDMEESAVAVQRVRDQWDRVLKEDGKKVTHISVAFPCEMFDTERERILEKLQ DADTIALLCCSSGYVAVKDMLPDFLGRFVPMMKTTGTFVFKLVLDESGKNSKVEQETA RVIKFSKVNQG" gene 2379886..2381004 /locus_tag="Dhaf_2201" /db_xref="GeneID:7259170" CDS 2379886..2381004 /locus_tag="Dhaf_2201" /inference="protein motif:PFAM:PF06032" /note="PFAM: protein of unknown function DUF917; KEGG: fgenesh4_pg.C_scaffold_10837000001" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF917" /protein_id="YP_002458671.1" /db_xref="GI:219668236" /db_xref="InterPro:IPR010318" /db_xref="GeneID:7259170" /translation="MSGIKTRQDLDDFVRGATLYGTGGGGSQEMGKNLLLQSFEEGRS IEWVRIGDVGEDAWVCTAFYMGSIAPLTDKDKKEMKALGLEERVEKRVLITAVQELEK ELGIHIAAVIPVELGGLNSAAPLDAAVQMGKKVIDADLAGRAVPEVAQTLPRLWGYPI CPIACCDAWGNVTIIKKTHGYDMAEALGKMLSIPAYEPIGLACFAMKAKDAGRALVDG SLTKCLQVGAEVRMACENGTDPAEAFASAAGGKVIMKGTVTAHDWESKGGYMYCTNEI TGADEFKGNVLKIWVKNENHICWLNGNPYITSPDLIQLVDRQTGEPITNTDTAVDMEV SVVAIPNLRYRTKEAIELLGPSHYGFEKISYKPMEEFF" gene complement(2381115..2381996) /locus_tag="Dhaf_2202" /db_xref="GeneID:7259171" CDS complement(2381115..2381996) /locus_tag="Dhaf_2202" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_3865 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002458672.1" /db_xref="GI:219668237" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7259171" /translation="MDIQHLRYFVEVCQTLNITKTADRLFITRQALSKSIHEFEKECG ASLFFRDKSKLQLTLAGRDILEKALPLVESFTEFEESLQPDSQNKKGRVHIAIGLGSL NALSPGLFVDFKRDYPNIALSFEEIFDSEVRKKVESCEADMGILGSSPSQITDYNYKL IQSGEIYFQVSKDNPLATKEYLIPADLHQQPFVSLGDVCDMHRLFMKKCHEVNSYPDF FLVTHDSNVANNMVASNLAVSFCHIQTVHSVSNPSVRILPLQLENTAWGTYIIQNKDT VCTPSTCLLIDYLTQRK" gene 2382149..2383708 /locus_tag="Dhaf_2203" /db_xref="GeneID:7259172" CDS 2382149..2383708 /locus_tag="Dhaf_2203" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: lpl:lp_3125 fumarate reductase, flavoprotein subunit precursor, N-terminally truncated" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458673.1" /db_xref="GI:219668238" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259172" /translation="MEKLSVNVSRRNFLRGAAASAVGIAAMGVLGGCSANPTGKTNDN ETGEVPLNISETISADVVVVGAGSSGVCATVQAAQLGAKVVLLEKNAFLGGNGAGTEG MFAIGSRMQQELGVGTEINFRDVIATEAEFFNYRVNALFWKDLVEASADNLNWLIDCG VPFSGVVDDYHGLGKIKAFHWFKEGKGKNYIDAMIAKAEELGVKIMTKTPANDLILDG GKVVGIYATKEDSSILQIDCKAVILASGGYANNEEMMKDRGYDLTYSINQGLPGHDGD GLRMASAAGGEDVSRQRGFLREPYSHGIDFFGTMTQALHRGGPFLWVNEEAQRYANEA CGAFTPGNNSNAVHTQRKSFLIFDRGVLEGLAKKVENLVEDVEDAVAKCPSQNIYKAD TVEELAQKAGLDPAVLKETVSRYNELCQKGLDEDFNKPADKMVGMTKAPYYIFRQDLA FWTSIGGISTNRKMEVINKMGEPIPGLYAVGTDGCELYRETYTMNVPASCNANNCHSG RIAAKNAAAAL" sig_peptide 2382149..2382256 /locus_tag="Dhaf_2203" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.821 at residue 36" gene 2383769..2384185 /locus_tag="Dhaf_2204" /db_xref="GeneID:7259173" CDS 2383769..2384185 /locus_tag="Dhaf_2204" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: amt:Amet_0479 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458674.1" /db_xref="GI:219668239" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7259173" /translation="MSKLKKTLTAIVCVMLTLSLAGCSEGAKGSANQAKEKKQLYTPG DYIAQAEGKDGPVKVKVTFSKSEITAIDILEQTETPGLGDEALKTVAEQIKGQQSLSV DTVSGATLSSQAMLTAVEDCVEQAGADPEQLKEGKQ" sig_peptide 2383769..2383849 /locus_tag="Dhaf_2204" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.331 at residue 27" gene complement(2384457..2385122) /locus_tag="Dhaf_2205" /db_xref="GeneID:7259174" CDS complement(2384457..2385122) /locus_tag="Dhaf_2205" /inference="protein motif:PFAM:PF03483" /note="PFAM: B3/4 domain protein; KEGG: cdf:CD2964 hypothetical protein" /codon_start=1 /transl_table=11 /product="B3/4 domain protein" /protein_id="YP_002458675.1" /db_xref="GI:219668240" /db_xref="InterPro:IPR005146" /db_xref="GeneID:7259174" /translation="MKISISDELVSLCPGAALGVLFYKAAVMPSTPKLISLFDDTITT LAKDYSTETIAQNPHIAATRQAYKALGKSPHDYRNAAEAMLRRIVQGKGLYRINNIVE INNLISISSGYSIGSYDTKQLQGNLELRRAEKGTHYDGIGKSAVNIEYLPTLYDQSGP FGNPSSDSRRAMIQPGEHEIATIIYSFDGTEELDYWLERLASYLKDYCGVVEAKTLIV KKC" gene complement(2385152..2385595) /locus_tag="Dhaf_2206" /db_xref="GeneID:7259175" CDS complement(2385152..2385595) /locus_tag="Dhaf_2206" /inference="protein motif:PFAM:PF01037" /note="PFAM: regulatory protein AsnC/Lrp family; KEGG: cbf:CLI_0926 HTH-type transcriptional regulator LrpC" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_002458676.1" /db_xref="GI:219668241" /db_xref="InterPro:IPR000485" /db_xref="GeneID:7259175" /translation="MKIDEVDMRILHELQTDSRLSIRELSKRVNLSPPSVTERVRRLE EHNIIEGYTIRLNKKKLGCAIDCIVEVTMKDGQYETFKEFMKDYEYSEWCYRIAGAAC FIVKLSVPSLADIEHFINAISSYALTETSIVFSQVDVNDRIINLL" gene 2385733..2386149 /locus_tag="Dhaf_2207" /db_xref="GeneID:7259176" CDS 2385733..2386149 /locus_tag="Dhaf_2207" /inference="similar to AA sequence:KEGG:CLK_0250" /note="KEGG: cbl:CLK_0250 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458677.1" /db_xref="GI:219668242" /db_xref="GeneID:7259176" /translation="MEMISFSQNGFTPFQQLLGHNKDLLEKWISLEDCLFSSDTFSPE LKEEVRRILAFNNGCEYCKAKGAPAKTIMDPRTQGAVHIADMSGKKTHMSDDDFSAIR EVFSDGEISELLALICFITACQRFGALLNLGPSCQI" gene complement(2386161..2386587) /locus_tag="Dhaf_2208" /pseudo /db_xref="GeneID:7259177" gene complement(2386595..2386915) /locus_tag="Dhaf_2209" /db_xref="GeneID:7259178" CDS complement(2386595..2386915) /locus_tag="Dhaf_2209" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458678.1" /db_xref="GI:219668243" /db_xref="GeneID:7259178" /translation="MLSGVIYSMVIYIRTMIERVGKNMKISISDEVYAVCPGAALGVL SYQASVAPSTQELFTLFDAAVAALSENYSTEKIAQNPHIAAAADPCRAGHYGESHSSC RFIY" gene 2387079..2387954 /locus_tag="Dhaf_2210" /db_xref="GeneID:7259179" CDS 2387079..2387954 /locus_tag="Dhaf_2210" /inference="protein motif:PFAM:PF06445" /note="PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cth:Cthe_2759 AraC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458679.1" /db_xref="GI:219668244" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7259179" /translation="MNMLAQFNEVMAYIEKNLLDDIEPGQISRIAGCSEYHFRRMFSF LAGMPLGEYIRRRRLSLAGTLLRAEQVKIIDLALQLGYESPEAFSKAFQAMHGVAPSQ AKKANAELKVMPPMTFQLTIKGGTEMNYRLVEKDEFYIVGFKKRITMQFKGINPEMDS LVQKLTPQIIAELKSLCDTEPKGMLSVSANFDERTAEGSQLDQYIGVATSQAMSNHYD LLHVPAATWAVFKAVGTFPEALQDTWAKIYAEWFPASGYEMTGGPELLWNETPDTSKP DYKSEIWIPVRKSIG" gene complement(2388048..2388917) /locus_tag="Dhaf_2211" /db_xref="GeneID:7259180" CDS complement(2388048..2388917) /locus_tag="Dhaf_2211" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458680.1" /db_xref="GI:219668245" /db_xref="GeneID:7259180" /translation="MRQVLQTPQSIPVAIEKSSSTIKYDRFGVLPTRQGLWTPAAGKS ICLTAVQGTAPLAVSILLSDGSDDFLSLRITTPFSTVNQNFPSPYQLKANNTLMVRTS DEQIDCNTSGAATATQAAYNGRTDFTNVNNAVGLRNGSVASLASALLTQTGGNIVLGY NLLPALADYLDIEQVVIKFYCRLSLTLAVGVSSMLLNWRPNPQAAWIQLDQISLAIIG TLNYLTNPLEFDITTAVLGAANPWDVITTLQTSFIGSHTGLGIGNTIQLDAVEIEICT TGQNQLTLFGYEV" gene complement(2388951..2389322) /locus_tag="Dhaf_2212" /db_xref="GeneID:7259181" CDS complement(2388951..2389322) /locus_tag="Dhaf_2212" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458681.1" /db_xref="GI:219668246" /db_xref="GeneID:7259181" /translation="MGDNTKLMSIVFSLEDPLITREYSSGIVLFRTFTSAQTNTALWT PASGKSVFMTAWQASASVPVTIQLNRGSNAAFMSIMPTSTLATYGASFPSPVQLNQDE AISVTTSAAGTVNITLIGYEF" gene complement(2389368..2392475) /locus_tag="Dhaf_2213" /db_xref="GeneID:7259182" CDS complement(2389368..2392475) /locus_tag="Dhaf_2213" /inference="similar to AA sequence:KEGG:Clos_0608" /note="KEGG: aoe:Clos_0608 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458682.1" /db_xref="GI:219668247" /db_xref="GeneID:7259182" /translation="MFKEEIGFNPTKKLLTAEAYQYNARSDGIKKVYTNDDEIKEYGD QGILDPHQVSYFNLFINGVLQPKVNYELHEGLLVLKTEDAPLQGSPIIITFVTFRDEE PALLNSALAEGILPSGQLSRGPVTDRGIEVSDTARPDLKLEKLTLSGPESLAAGQAAT WVFTITVSNQGALPIRDIVVREFILLDSVLAIETLSLSQGDLALDDDLITWTIDHLNP EESAAASFRVEGLFKAAGTRFLSRGSATGRSSAAAVRTDIIGAGPVAVSKGLELTNTI LSGPTQVTRGQTCTWRVELKLTNLSGVELSDLLVTDTLLIENISNVNVVSISHGDAHL VNREIHWSLTGLKPLEMAVLALDITGSFTQEGLSSLDTASGSGKLGTGKPETGRLSTN LARDVQIIVLPEIIPVQEALFLQTSVLTIPLSGSLGTPKRWELSLEITNLSNEVIRTI LVTDTILLDEFKWTDTVFVSSGEVATAHNTLLWTIEELLPGRTLTARFAVEGLFNTTG LRSLSRAVASGWSLNSCVLSNIASGALIRISGYIFACVIVDKVFSQCQDRYCFEDIAL PISAFQRILFKPGRIMEDTLEITAIRDRPNFKRVQFLLKIPFTIVAGGTTLGQDSLPP IPMDLIMFMPEPRDEFSYDVVVETRSELLGSPDGCEEGRHCTVGVFIVIKAVGKVQLL IPSLEVDPEPPLCEEFLPNQLCAGFKTVVFPDFYPSQNTVQSSFQDRLQDKLQTILSP PNPPAQLREALPCPPVFGNLTLEKYITAGPSVVNPQTNGTWTIEIKLINDGYGPVSNV VMSDTILADSLAVINVLSLTQGTVFQEENKLLWDIGTLNSMDTVVLAAEVTGSFNAQT SALLQGENQQYNALADGVKTAFTDNDELLIYGNQGIPDPREISFINLYINGVLQPQTN YKVRPGLLILTVDSPPQKGVPVILESLIIRDSKDTLLKAELYQYNTRANGQREYTNAD EITMYGDQGILAPQQTSYHYLFINGVIQPKSNYTLEKGLLTLKVAHLPLEGVPMSIQF VSLYS" repeat_region complement(2392628..2394196) /note="IS element" gene complement(2392702..2394060) /locus_tag="Dhaf_2214" /db_xref="GeneID:7259183" CDS complement(2392702..2394060) /locus_tag="Dhaf_2214" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH3985 transposase (13)" /codon_start=1 /transl_table=11 /product="transposase I1182 family protein" /protein_id="YP_002458683.1" /db_xref="GI:219668248" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7259183" /translation="MFNIRQERLFSLEEILETSPRDSYSLILGSLDIIPLLNAVSKKA IFGAPTQLNYSAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSEAS YCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKT VVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIEDQLPYSFTELVQHIPLDPQ WGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHP YLNPSHILADAGYDYAPIYEQARSIGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSY RYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFE LYKQRTAVERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSM AA" gene complement(2394340..2394720) /locus_tag="Dhaf_2215" /db_xref="GeneID:7259184" CDS complement(2394340..2394720) /locus_tag="Dhaf_2215" /inference="similar to AA sequence:KEGG:Clos_0609" /note="KEGG: aoe:Clos_0609 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458684.1" /db_xref="GI:219668249" /db_xref="GeneID:7259184" /translation="MATKLFKLAIDAVTTTDTAINPAVESYFYELSEDQRTGGTVTIP ATEFTDDAGNVMTGNLTPVTTDNGYYLLFINGVLQQTSLYTVSGDGSQVVITDADTVP VGAPITLVVTNFAPVSDSDTTVTT" gene complement(2394939..2395181) /locus_tag="Dhaf_2216" /db_xref="GeneID:7259185" CDS complement(2394939..2395181) /locus_tag="Dhaf_2216" /inference="similar to AA sequence:KEGG:Swol_0270" /note="KEGG: swo:Swol_0270 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458685.1" /db_xref="GI:219668250" /db_xref="GeneID:7259185" /translation="MDKLDIILEKLEKLEAGQKELQAGQKELQAEQKEMQANLDRMEI DILSLRMDNKSIHRKLDVIASAVVDAQEDITMLNAQ" gene 2395859..2396269 /locus_tag="Dhaf_2217" /db_xref="GeneID:7259186" CDS 2395859..2396269 /locus_tag="Dhaf_2217" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; KEGG: cpf:CPF_1752 LytTr family DNA-binding response regulator" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_002458686.1" /db_xref="GI:219668251" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7259186" /translation="MLSAGLTISLCDDGALQRAYVKLIIQDYESRFGIKFNLYEFSSG EELLEKFNQNPKLFDLFFLDHRMKNITGLETASYIRKRNKVCHIVFITASEEQEDFKA VSPLRVLTKPAQPAAIWDILDKVSAEKISPSHSG" gene 2396362..2397219 /locus_tag="Dhaf_2218" /db_xref="GeneID:7259187" CDS 2396362..2397219 /locus_tag="Dhaf_2218" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458687.1" /db_xref="GI:219668252" /db_xref="GeneID:7259187" /translation="MNDLSTERTPQVIAAEITMITRQTRKILLASAVEIGRRLKEAKS LVNHGEWEKWLEESVRYSLSTARRLMQLYEEYGASFPDEPGLSNHAPVRDLTYTQALL LLGLPGEEREEFLAQNDVTGMTKLELQQALKDRDLAKQESEEIQQENKALKKGLEGIN NAISSLMVQSLLPENAQRESPAAGASSSVGSTGSAPLESNAAMPTHNLKTEIDPNAPA KYVERCDTCCKTISTAFFDLTTALTNLHYLDGNLKEQKRKEAQKLLETIAETIKVWPP PKKPLKVIR" gene complement(2397223..2397867) /locus_tag="Dhaf_2219" /db_xref="GeneID:7259188" CDS complement(2397223..2397867) /locus_tag="Dhaf_2219" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ckl:CKL_2425 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458688.1" /db_xref="GI:219668253" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7259188" /translation="MNDKYTSRFITTSDAQTDSMIFKLRSTWWSRFYEYAWAASFAEP EATVLDAACGISHPFKFFLSENCAHVYACDIDERILHPGSIIQEITADLGYEAAQAIH PGYFERIHFSQANLAQLPYSESMFDTIFCISVLEHLDLPTLRSALQEFKRILKQDGLI ILTFDYPVINLTLLQTEIQQQGLSFYGSVDFTLPADAITGYDLNCFRAVLTKSR" gene 2398123..2400771 /locus_tag="Dhaf_2220" /db_xref="GeneID:7259189" CDS 2398123..2400771 /locus_tag="Dhaf_2220" /inference="protein motif:TFAM:TIGR00231" /note="TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor G domain IV; protein of unknown function DUF901; KEGG: cpy:Cphy_1823 small GTP-binding protein" /codon_start=1 /transl_table=11 /product="small GTP-binding protein" /protein_id="YP_002458689.1" /db_xref="GI:219668254" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR002127" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="InterPro:IPR010298" /db_xref="GeneID:7259189" /translation="MKKLVIGLCAHVDAGKTTLSESMLYLSGAIRKMGRVDNKDAHLD TFELERARGITIFSKQALLEVAHTQITLLDTPGHVDFSLEMERTLQVLDYAVLVINGA DGVQGHTRTLWHLLDIYQTPVFLFINKMDQVGTDREKLINELKSQLSDGCIDFGQPES TDFYDQLAMCDEMLLDAYVDTGHIELPLIREGIRKRKVYPCFFGSALKLEGVEELLQG IVDYAHLPAYPESFGAKVFKIGRDEQGNRLTYLKITGGRLKVRESLSNGVWEEKVNQI RIYSGKKFEAVNEVEAGSVCAVTGLTLTKPGEGLGTETAAHSPLLEPVLAYQMILPEG CDPRVMMPKLRQLEEEDPGLQVVWDEELREIQVQMMGEVQLEILQSLIRSRFGLEVSF GSGRIVYKETIGNAVEGVGHFEPLRHYAEVHLLMEPGERGSGLQFGAQCSEDSLSKSW QRLVLSHLEEKVHKGVLTGSPITDLKITLVSGRAHTKHTDGGDFREATYRAVRQGLME AESILLEPYYAFQLELPEKMVGRAMNDVEKMHGTCQLARIEGERATLTGSAPVATMRN YQQEVMAYSKGLGRLFCSLKGYEPCHNPDEVIAMAGYDPERDVDNPADSVFCAQGSGY LVPWYQVKEYMHVESYFAKESEFIDAESHLQIPYAEERWIDPEEIDRILNQTYYANQG KKSLWQKRKKAVESYYRPPADLNKPKESQEEYLLVDGYNIIFDWPELKELAQDNMDGA RIRLLDILSNYQGIRKCRIIVVFDAYRVQGHPEEAIDYHNILMVYTKEAQTADQYIER FAYDHQKKYKITVATSDGLQQIIIRGAGCALLSARDLKEEVIMANKQVIEAYQAQQTP TRHYLKDALSAESEQQMKEFLKREKD" gene 2401275..2401997 /locus_tag="Dhaf_2221" /db_xref="GeneID:7259190" CDS 2401275..2401997 /locus_tag="Dhaf_2221" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002458690.1" /db_xref="GI:219668255" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7259190" /translation="MADCLSAMRSVEFLSHFSDDELQEIGKCLLTRVQRYKKGEKVFE AGQPAVSMGVILQGRVYIEDDDAFGNRSILAELHQGDTMAGSCVCAQRPSYLTSFIAA EPSEILLLNCGTIYTNCNKSCSIRGKMLENLLKIIAAEAVTQSRKLKCLSQRSIRGKL LAFFSYCVQEKGENSFTIRFSRQELADFLCLNRSAMSKELGKMRDDGLLRFDRNYFEM LSCEVKRESPAQDKMTTFLKAI" gene 2402004..2403044 /locus_tag="Dhaf_2222" /db_xref="GeneID:7259191" CDS 2402004..2403044 /locus_tag="Dhaf_2222" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: mla:Mlab_1720 hypothetical protein" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002458691.1" /db_xref="GI:219668256" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7259191" /translation="MLIIELKGTNNQPWQLGAILGTGVLTVALSLTALCLGRYELSII DVVKILLSAFGDLQQTWTDAMADVVFQVRLPRVFAALLVGAGLSISGTTYQGIFKNPL VSPDLLGVSSGACVGAALAILNGLDAGGIQICALLGGLLAVAITTTIPKLLRNSSNLI LVLAGIIVAGFMSSALGLLKYVADPETQLPEIVFWQMGSLATTSMGDVMMIVPAMLIS MALLIAVRWRINILSLGDEEAGSLGINIRVIRGLAIVCSTITTACAVCISGTVGWIGL VVPHLCRMLVGPDNTRVIPLSIFVGASFMLVVDTVARTVTSGEIPLSILTGFIGAPLY GWLLFKQRMKIK" gene 2403041..2403820 /locus_tag="Dhaf_2223" /db_xref="GeneID:7259192" CDS 2403041..2403820 /locus_tag="Dhaf_2223" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mla:Mlab_1719 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458692.1" /db_xref="GI:219668257" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259192" /translation="MNSLLEVNQAAFAYPGGKTVFKDVNFTISPGQILSIIGPNGAGK STLLNCIAGFNTLNRGSIRIEGIPLPKMNRKAIARYIGYVPQIHNPAYGYSIRDFVVM GRAPYISTFRMPGREDFAKADAAIAAMGISHLAQRPYTDVSGGERQQATIARVIVQEP QIIMLDEPTSALDFGNQLRTVRMIKELAERGYAIIMTTHNPDQAMMLEGLVGILEKNG RFSVGKAQEIINEETLTELYQTEVKIPYVEQISRNACLARL" gene 2403869..2404702 /locus_tag="Dhaf_2224" /db_xref="GeneID:7259193" CDS 2403869..2404702 /locus_tag="Dhaf_2224" /inference="protein motif:PFAM:PF04016" /note="PFAM: protein of unknown function DUF364; KEGG: aoe:Clos_0216 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF364" /protein_id="YP_002458693.1" /db_xref="GI:219668258" /db_xref="InterPro:IPR007161" /db_xref="GeneID:7259193" /translation="MEKAYLQILDLYRQEGLKPGRLTQLGYFPKWTVAMGDNGQIGRA FHFDGEHAVYPLRDPDVLLPLQRFVGKSLLALAEELLAKTDIQMRAACLAVLNTLSYP LNQAEQLKKRGFQPVEFDNLEFINAEDRVVLVGYGALIKETLARCPVIDICDMRFLSS LRTVSIGRTIDYGPPGIRFHGAAENQTLLADADIVLISGSTLVNGTYRDLIRYARKAR VIGMFGPSAQLIPEFLQGGGINYITTSGITDGDRFYQVLSNPYAGEGESGTYKYTIRM F" gene 2404728..2405774 /locus_tag="Dhaf_2225" /db_xref="GeneID:7259194" CDS 2404728..2405774 /locus_tag="Dhaf_2225" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: mem:Memar_0029 periplasmic binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002458694.1" /db_xref="GI:219668259" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7259194" /translation="MRKYFAVLLVTVLLMVSTLAGCSPAGDSARNPAPAAAERTATDA KGREVKIPDKVEKIAITCYGGATHEMTVLGFADAIVAQPTMKSFPQLKKMFPQYETVI DPGSFNEVNIEEIIKADPDMVFVGVSSPEGNKKIEEAGFPTYTMWIGWAAIDTLKQEF LNIGAIMGNEEQAKKLVAYWDEKLAALDTMLAKVPESERKVVYYTGADITKANTSDWA WTFIEEAGGVSAISKGTTGDVNVEVVLAADPDVIITQGGNGTAGFLQDNRIQNLTAIK NKAVYECPIAAFWWDRPSPEAPLGFMWLAQTLYPEYTKDIDLKEETKYFFSEFYNYDV SDEEYASFFVHKKK" sig_peptide 2404728..2404790 /locus_tag="Dhaf_2225" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.413 at residue 21" gene 2405926..2406723 /locus_tag="Dhaf_2226" /db_xref="GeneID:7259195" CDS 2405926..2406723 /locus_tag="Dhaf_2226" /inference="protein motif:TFAM:TIGR01256" /note="TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: cbt:CLH_1318 molybdate ABC transporter, periplasmic molybdate-binding protein" /codon_start=1 /transl_table=11 /product="molybdenum ABC transporter, periplasmic molybdate-binding protein" /protein_id="YP_002458695.1" /db_xref="GI:219668260" /db_xref="InterPro:IPR005950" /db_xref="GeneID:7259195" /translation="MLKKHKYLAIVSVLCLALIFLTACSSKPAEVPGGQAGPAESLSG KPLFVYCGAGMTKPFGEIAEAFKAESGVEVEVAYANAAQIQTQIKTTQEGDLFIAGSV EELNPVKDVVAASKELVKHIPVLAVKSGNPLKITGLKDLTKEDVEVVLGDAEATPIGK IANKALTDLGVLAEVNVIARTATAPEMITALSVDQCDAIIVWKENVSGSGIEIVNTTD LDTQIKKIPAATLSFSKNTETTAALLKFLDTDQAKSIWEKYGYEVVN" sig_peptide 2405926..2406006 /locus_tag="Dhaf_2226" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.672 at residue 27" gene 2406741..2407565 /locus_tag="Dhaf_2227" /db_xref="GeneID:7259196" CDS 2406741..2407565 /locus_tag="Dhaf_2227" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mem:Memar_0257 NifC-like ABC-type porter" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458696.1" /db_xref="GI:219668261" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259196" /translation="MKKKLSLYSLFDVLTAAVTLSVVAFISAAILSILIKGFPYLGEA FFSEEVRFAVKLSLYTASISTFVCFVLAVPTAYSLTRGSFPFKKIAQIIIELPLSMPY LVLGLCLLLIFSSEFGKALRDMGFRVVFDKNGIIMAQIIVNLPYMIRLLKTAFAELDE RLEIIAGMLGASRWQRFVTITLPLARNAVISAMILVWSRGLGEFGATLMVVGATRMKT ETLPASIYLNMATGDIGAAMASAIIILLISFVSLFATSRLERKNLQASRMKDVYWQ" sig_peptide 2406741..2406827 /locus_tag="Dhaf_2227" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.518 at residue 29" gene 2407556..2408281 /locus_tag="Dhaf_2228" /db_xref="GeneID:7259197" CDS 2407556..2408281 /locus_tag="Dhaf_2228" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mem:Memar_1887 ABC transporter-related protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458697.1" /db_xref="GI:219668262" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259197" /translation="MAVNPLVEIRDYSLELGKFKLQPINLMIHEREIFGVLGKTGSGK TVLLESIAGFYRGRSGQIYIQGQDIAEVPLEKRGIGFVYQDFGLFPHMTVADNIGYGL RMQKKEKQTIKDEVNRMAEILAISSILKQYPGTLSGGERQRTAIARALILNPRILLLD EPFSSLDPATKETMYRQVKEIHRLFGCTILFVTHDFKEAQSMADRIGIMIKGELKRIR RSTELFVQDSDEEVNRFLGLNRE" gene 2408307..2409164 /locus_tag="Dhaf_2229" /db_xref="GeneID:7259198" CDS 2408307..2409164 /locus_tag="Dhaf_2229" /inference="protein motif:TFAM:TIGR01334" /note="TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: ckl:CKL_3642 predicted nicotinate-nucleotide diphosphorylase" /codon_start=1 /transl_table=11 /product="modD protein" /protein_id="YP_002458698.1" /db_xref="GI:219668263" /db_xref="InterPro:IPR002638" /db_xref="InterPro:IPR006242" /db_xref="GeneID:7259198" /translation="MLYLTRDEIDRWLKEDVPYIDLTSWTLGIREQQGSIAYFTREEA VVCGTEEVRQIFDHLHIETDRFIPSGQQVKQGEVLISGKGRAEDLNMAWKVGQNILDH CSGIATKTRRMVDDAKSINPKVAVLTTRKGFPGTKALTTKSIMVGGALPHRLGISETI LIFKQHMNMIGGFEALLKKLPEIKGECCEKKIIVEAGSLEQTVSLCQAGVDGIQFDKL KSEELKNAVKYLRAEFPHVVALAAGGINEANVRDYAETGVDGIVTTSLFSAKPLDIGV KIEPIQIHL" gene complement(2409328..2410812) /locus_tag="Dhaf_2230" /db_xref="GeneID:7259199" CDS complement(2409328..2410812) /locus_tag="Dhaf_2230" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cpf:CPF_1057 sensor histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458699.1" /db_xref="GI:219668264" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259199" /translation="MTNKSPTRPPGRIRNKMRFSIVWKLNIKLFFRLFWIFINLNICL ILISAVGLFVHAEQTAGTVAEKLTQAGPPPPLEVDDWLELTPIRIEHSAAEPEGFRIP SGIQAYLPSLTAQQIRSIDLPPRGEGLGIWGRIQQVSYNVALPMDDSFYLLSYRPVQT IRILAAMFGIMLLIEGITLLRSIASGARVIRRTLQPIEQLAETARNLSHEGIFSPEQL KDLAGKLDDINATHLDTRISVDETQSELQSLAAAINGMLDRINESYRSQARFVSDASH ELRTPISVIQGYANLLDRWGKKDEKTLQESIDAIKNETAHMKTLVEQLLFLARGDNNT MALQIESFELSALAQEILRETQMIDGGHEYSTILTPVYIKGDKGLIKQATRILMDNAM KYTPAGKQITLSVSSKDNLARLTVQDEGIGIEPEAVPLIFDRFFRTDESRTRATGGSG LGLAIAKWITERHGGHLEVLSRLEVGTRISIVLPMVPEGEVHKG" sig_peptide complement(2409328..2409498) /locus_tag="Dhaf_2230" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 57" gene complement(2410802..2411482) /locus_tag="Dhaf_2231" /db_xref="GeneID:7259200" CDS complement(2410802..2411482) /locus_tag="Dhaf_2231" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_3565 two component transcriptional regulator, winged helix family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458700.1" /db_xref="GI:219668265" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR005829" /db_xref="GeneID:7259200" /translation="MSQTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAET GRFDLILLDVMLPKLNGTEVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITK PFAIEELLARIRNALRNTAPLSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLL HFLLKNKGIVLSRESLLENVWGFDFAGDTNAVDVYIRFLRGKIDEVFNVKFIHTVRGV GYVIKDDQ" gene complement(2411509..2412060) /locus_tag="Dhaf_2232" /db_xref="GeneID:7259201" CDS complement(2411509..2412060) /locus_tag="Dhaf_2232" /inference="protein motif:PFAM:PF00627" /note="PFAM: ubiquitin-associated- domain-containing protein; KEGG: cbe:Cbei_3567 UBA/Ts-N domain protein" /codon_start=1 /transl_table=11 /product="ubiquitin-associated- domain-containing protein" /protein_id="YP_002458701.1" /db_xref="GI:219668266" /db_xref="InterPro:IPR000449" /db_xref="GeneID:7259201" /translation="MMTLLEKVEKLCSMGNITFEEAKAALDAANGDLLDAIIYLEKQG KIHAPAGGGYYNSEKTVDAHVVSYQAKDWKHQNHGSDKENPFLSFCKDAWKLFVKLLR KGNANSFEVLHGEEVKGSVPITALVLLLIFAFWVTIPLMVIGLFFGFRYRFVGTDIKG TTINDAMDSAADAAENLKKSMDK" gene complement(2412841..2413482) /locus_tag="Dhaf_2233" /db_xref="GeneID:7259202" CDS complement(2412841..2413482) /locus_tag="Dhaf_2233" /EC_number="2.3.1.28" /inference="protein motif:PRIAM:2.3.1.28" /note="PFAM: transferase hexapeptide repeat containing protein; KEGG: cth:Cthe_1678 hypothetical protein" /codon_start=1 /transl_table=11 /product="Chloramphenicol O-acetyltransferase" /protein_id="YP_002458702.1" /db_xref="GI:219668267" /db_xref="InterPro:IPR001451" /db_xref="GeneID:7259202" /translation="MRYGPDPNAIYPNEAIKSLCYIKNIITRPNIMVGDYTYYDDDQG PEKFEDHVTHHYEFLGDKLIIGKFCAIAKGIEFVMNGANHRMSSVTTYPFNIMGNGWE IAMPSLADLPFKGETVVGNDIWIGQNVTVMPGVHIGDGAVIAANTVVVKDVPPYHIAG GNPGKLIKKRFNDDLINYLLDLKWWDWPAKKLFRNLDVLCSSDLERIKTVKDF" gene 2413749..2414414 /locus_tag="Dhaf_2234" /db_xref="GeneID:7259203" CDS 2413749..2414414 /locus_tag="Dhaf_2234" /inference="protein motif:PFAM:PF00301" /note="PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cbe:Cbei_0465 rubredoxin-type Fe(Cys)4 protein" /codon_start=1 /transl_table=11 /product="Rubredoxin-type Fe(Cys)4 protein" /protein_id="YP_002458703.1" /db_xref="GI:219668268" /db_xref="InterPro:IPR004039" /db_xref="GeneID:7259203" /translation="MRKLACSICGYIYDEAAGDPERGIAPGTLWADVPEEEWECPLCG ATKSDFQEQSGAPTVVQELSDEHDGEDMRELSFGELSALCSNLAKGCEKQYRNEEVDL FNQLAEYYNSRNSRAEEGSLKELLALIEEDLNSAYPHANGVAARAADRGALRALVWGE KVTRILNSLLNRYEKQGEALLANTHVYVCEICGFVYIGEEAPAICPVCKVPRKKITEV KRG" gene 2414422..2415600 /locus_tag="Dhaf_2235" /db_xref="GeneID:7259204" CDS 2414422..2415600 /locus_tag="Dhaf_2235" /inference="protein motif:PFAM:PF02915" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpr:CPR_0938 periplasmic [Fe] hydrogenase 1" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_002458704.1" /db_xref="GI:219668269" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR003251" /db_xref="InterPro:IPR004039" /db_xref="InterPro:IPR009040" /db_xref="GeneID:7259204" /translation="MPAIRNIDLCTKDCLCLYVCPTGATDTETGQIDPDKCLDGCRAC VDACPSHAISFVPEVYPPQQGKSPSVKRAMLSLSASKTKQEKIAAQVAERSGSPILRQ FAEALSASNRLMAEDILREAGYLLPQSVNAQDFLQSLLDSPQGEDFPREAAARLLAKL KTNQAKGQEEKKMTHYRCSICGYLHEGELTADFKCPICKQPASVFQLVEEKGSAGNPY AGTKTEKNLLDAFAGESQARNKYTYFAAIAQREGYDQIAELFLHTARNEQEHARIWYE ELGNLGRTAENLLHAAEGENYEWTDMYDRFAKDAEAEGFKDLAARFRKVGAIEKAHEE RYRALLKNVEMQQVFAKGEEAMWECRICGHLVMGRKAPDVCPVCKYSQSYFEVRKENY" gene 2415810..2415917 /locus_tag="Dhaf_2236" /db_xref="GeneID:7259205" CDS 2415810..2415917 /locus_tag="Dhaf_2236" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458705.1" /db_xref="GI:219668270" /db_xref="GeneID:7259205" /translation="MGGDERGEAMMKATACSGCGKKYVYAAKDIVSLLK" gene 2415935..2416445 /locus_tag="Dhaf_2237" /pseudo /db_xref="GeneID:7259206" gene 2416533..2417234 /locus_tag="Dhaf_2238" /db_xref="GeneID:7259207" CDS 2416533..2417234 /locus_tag="Dhaf_2238" /inference="protein motif:PFAM:PF01980" /note="PFAM: protein of unknown function UPF0066; KEGG: amu:Amuc_0110 protein of unknown function UPF0066" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0066" /protein_id="YP_002458706.1" /db_xref="GI:219668271" /db_xref="InterPro:IPR001378" /db_xref="GeneID:7259207" /translation="MSKELNIIARIRTDFPTKFGIPRQSGLIDDLKAAVVFEPEYRNA DALRGLEGFSHIWLIWEFSAALRDTWSPTVRPPRLGGNKRMGVFATRSPFRPNPLGLS SVRLDSIELDPELGPILHVSGADLLDQTPIFDIKPYLPYTDCHPEATGGFIEPLVDHE LVVDFPEQWLNSIPPQRRQALVRVLAHDPRPSYQKDPQRIYGLEFAGFEIKFTVLDKV LTVCEVKQTGTHPVP" gene complement(2417250..2419574) /locus_tag="Dhaf_2239" /db_xref="GeneID:7259208" CDS complement(2417250..2419574) /locus_tag="Dhaf_2239" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: aoe:Clos_1268 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458707.1" /db_xref="GI:219668272" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7259208" /translation="MVSMLQKKVLRDTKENRWSFLAIVCICSLGIALFSGINMYVTTV EAAVSDAYKQANLADYWIYKGEISPSHLADLRSLEEVQEVQRRKVTDITLPGTPGAVL HLHALDETATINVPELLEGSGLDGSEANALLLDSRFAEAHGLSAGDRITAGEGEKQTK WLIQGIVRAGEYIYYAPEGLTVPDYQKYGFAYTNASSLPEVPFNEIILTVAEGSTLAQ AEVSAQIRERLAGANILSRHHQTSYRKVADAMTGIKQIGLLFSLAFFLTGALVTWITV SRMLENQRQHLGTLRSLGYSKKEITGRYALFGVLITLPSMILGWMMARYLIAEFLYRI GMTYYTIEATGVIPFTPHFFLSALCVAAVTCGGALLSCRRSLKLTPAALMRPKPPAQG HRIFLERITPYWRRLSFSGKIVTRNLFRNKGRMLMGLVGIIGSTSLILCGFRLMNSIN GMLDRAFKETVHYDVEIKLRTPATVEGLADIYNTLSSGQHVDATMALSVYLYGKEGDV QSPYLVVMDEGQKSLNFKDTKGKEIPLPEEGALITLRMAKALAVDIGDTLRAESLDGT VMALKVADIVDFPVGNEIYLSKTAFAKVSALPFLVRTLLIQGRDLDLSKLNSDPRISL VETKEEMRSNMLIVLESLQSFQMILILFAGLLAFAVMMVLGRMNYYERIRELATLKVL GFYENEMKRLVLRETIWITVFGLPFGYILGSLLLGVIVDQATTPDLEILPMIDLSSIA VGFAFMLGFTMLVNFMMGRQFKKVDMVASLKSVE" sig_peptide complement(2417250..2417390) /locus_tag="Dhaf_2239" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.937) with cleavage site probability 0.775 at residue 47" gene complement(2419568..2419738) /locus_tag="Dhaf_2240" /pseudo /db_xref="GeneID:7259209" gene 2419807..2420220 /locus_tag="Dhaf_2241" /db_xref="GeneID:7259210" CDS 2419807..2420220 /locus_tag="Dhaf_2241" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lin:lin1827 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458708.1" /db_xref="GI:219668273" /db_xref="GeneID:7259210" /translation="MNMLDESIAKIKELIEKEGDFFAKIEQYIQIRTWYYGQYSLRSF FEAVESDPELRNYFDHYNTANKELFIKFIAAGKRSAVFAQDVSDTAIGIYLDMIQSYF LHNKKIRNQLEHNPELVRQLNMLFLDGLIRQKNRK" gene 2420582..2421586 /locus_tag="Dhaf_2242" /db_xref="GeneID:7259211" CDS 2420582..2421586 /locus_tag="Dhaf_2242" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: cpy:Cphy_1003 FMN-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002458709.1" /db_xref="GI:219668274" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7259211" /translation="MKKTLGIILSISLAFSVLALPIFAAVDTTTSATVEAATPAAPAT PAKPAATAPAAAPSVDTSKIAAGTYYTVVSGDFFWQIAAKHGLTIDALAKLNPQIKNV NLIFPGQKILVKAEEAAAASTSTSTSTSTAAVAPAAKKLYQGIGMVANYRDNTARQKD HDNLNITTVAALFDDAGKIVKLQFDVVEILPDMFPGWMDPEAADKSFYKDAQANGFNW ETKKEEGDAYGMKASAVSGKEWWEQMNFYEEYFKGKTVAEVQDWFAKYCDANGRPYKM AYPEKLTDADKAKVATFTEAEKKMLVDVTTGATMSLQDPHSRFIDALVKAYEVRKEVK" sig_peptide 2420582..2420656 /locus_tag="Dhaf_2242" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.910 at residue 25" gene complement(2421772..2422092) /locus_tag="Dhaf_2243" /db_xref="GeneID:7259212" CDS complement(2421772..2422092) /locus_tag="Dhaf_2243" /inference="protein motif:PFAM:PF02036" /note="PFAM: Sterol-binding domain protein; KEGG: ank:AnaeK_1526 sterol-binding domain protein" /codon_start=1 /transl_table=11 /product="Sterol-binding domain protein" /protein_id="YP_002458710.1" /db_xref="GI:219668275" /db_xref="InterPro:IPR003033" /db_xref="GeneID:7259212" /translation="MDSPKALMDDFIRKTEEKAELTSSITGVYQYDFSASDHGVWSIT FENGKAVYTEGETQNPVVTIKAKFDTFVDFYQGKLNAMSAVMTGKIKIKGNMSAAMKM QQFL" gene 2422292..2422834 /locus_tag="Dhaf_2244" /db_xref="GeneID:7259213" CDS 2422292..2422834 /locus_tag="Dhaf_2244" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: mla:Mlab_1259 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458711.1" /db_xref="GI:219668276" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7259213" /translation="MLHSKQFVVQHYNLIGIERDKSMNPIHKGKKDIGFQIRSLNHLI KRHVENSANFQYAKSITGTNSWIIAYLAENRDKDIFQKDIEEMFTVNRSTTSKVLKLM EQKELIERRSVPDDARLKKLVLTPKALALHQSIVEDIDSLETMLIQGFTEEEIQQFNA YIERMKENLTGKKDGECQCK" gene 2422866..2424614 /locus_tag="Dhaf_2245" /db_xref="GeneID:7259214" CDS 2422866..2424614 /locus_tag="Dhaf_2245" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mla:Mlab_1258 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458712.1" /db_xref="GI:219668277" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259214" /translation="MIKKLAGSIRQYKKATLLTPFFVALEVTMEVIIPLLMARLIDYG IDAGDMNYVAKMGGALLLAALISLAFGLLAGRTAAVASAGFAQNLRQDMFYKVQSFSF VNIDKFSTASIVTRLTTDVTNVQNSFQMLTRMAIRSPIMLFFALFVSFSIDQKLSLIF LGSIPILGVGLWLIMSNVHPIFARVFRTYDKLNNVVQENLRGMRVVKSFVREDFETQK FMAISQSIYKDFTKAERLLVFNMPLMQFCMYACILFVSWFGARAIVASGGDPVAGLST GELLSLITYATQILMSLMMLSMVFVMLTISRASAARIVELLEEESNLQNKDHPVCQVP NGDISFENVSFSYSKDADKPVLDRINLDIRSGETLGILGGTGSSKSTLVQLIPRLYDV TEGKVKVGGVDVRDYDLETLRNQVAMVLQKNVLFSGTIKENLRWGNEQATEEEMIQAC KLAHAHDFIAGFPHQYDTLIEQGGVNLSGGQKQRLCIARALLKNPQILILDDSTSAVD METDAQIRKALAEHLPDTTKLIIAQRVSSVQDADRIIVMDDGKIKAVGSHEELLQTSE IYKEVYESQAKGGEEG" gene 2424611..2426563 /locus_tag="Dhaf_2246" /db_xref="GeneID:7259215" CDS 2424611..2426563 /locus_tag="Dhaf_2246" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3299 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458713.1" /db_xref="GI:219668278" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259215" /translation="MMGFRGGPGKSSAHGRGLPGGKPPHDKFNPQTAKRLLSYLRDYK VQTFFVMVAILISALVGVLSSVFLKILIDDYIAPLLLEAVPNYAGLLRIIMVMAGIYL IGVLATLIYNWIMVSISQGILKKIRDEMFSHMQKLPVKYFDSHTHGDVMSHYTNDTDT LRQMISQGIPQTFSSFITIVAVFFAMLYLSVWLTVFVVLCIFLILKVIGSIAGKSGTY FMQQQQSLGTLNGYIEEMIHGQRVVKVFNYEEKSKESFNRKNEELCAHATAANSYVNI IMPMMSNFGYLLYVALAIVGGLLVIGGVTNLTITGTNALTLGTIASFLQLSRSFIMPI AQVSQQLNAIIMALAGAERIFKLLDEKPEKDEGQVTLVHVKQERGPIVETSSHTDGWA WKIPQEDGMVDYRELKGEVRFFDVDFGYEENKMVLHNITLYAEPGQKVAFVGATGAGK TTITNLINRFYDLADGKIRYDGININKIKKEDLRRSLGIVLQDVNLFTGSVMENIRYG RLDATDEDCIAAAKLANADGFIRMLPQGYQTVLSGDGSGLSQGQRQLISIARAAVADP PVMILDEATSSIDTRTEAIVQRGMDSLMEGRTVFVIAHRLSTVKNSDVIMVLEEGRVI ERGSHEKLIAEKGKYYQLYTGAFELE" gene complement(2426567..2427421) /locus_tag="Dhaf_2247" /db_xref="GeneID:7259216" CDS complement(2426567..2427421) /locus_tag="Dhaf_2247" /inference="similar to AA sequence:KEGG:HM1_1691" /note="KEGG: hmo:HM1_1691 ABC transporter permease" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="YP_002458714.1" /db_xref="GI:219668279" /db_xref="GeneID:7259216" /translation="MLSIIKLTFREILSRRIFFITLLMTLAFLIFFGVTNHYAAQGFI QAMHGFDSANTVIQNSIRSQIIMMGLNFSSMILALLTILSTVGGVAGEIENHQIDTIL ARPLPRRSYILGKFLGLGTVVVVYALSLFVGVLLINQLTGGDIAARLEPSSVVQGGLI FVLSPLLIVAAGLWLSTRMSTINSGIILIILYGVGFVGGLVEQIGTLLNNPSLINTGI ISSLIFPYNALFRKTDALLTDSGNSAMAMFNGGAGSEPSNLMLGYGVFYTVALLFWAI RHFEGRDV" sig_peptide complement(2426567..2426689) /locus_tag="Dhaf_2247" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.667 at residue 41" gene complement(2427405..2428352) /locus_tag="Dhaf_2248" /db_xref="GeneID:7259217" CDS complement(2427405..2428352) /locus_tag="Dhaf_2248" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hmo:HM1_1690 ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458715.1" /db_xref="GI:219668280" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259217" /translation="MSEFVIQTWNLTKHYDGKAGCSDVSLQVPPGVVYGFIGPNGAGK STFVRTLLGLIHPTSGRAEILGHPLNNVKARAKVGYLPELFRYPDWLTGAQLLELHGD LAGVPPAERQRRIQSLVERVGLSGREQEKIRRYSKGMQQRIGLACALISDPELIFLDE PTSALDPIGRRDVRDLILALRKEGKTVFLNSHLLAEVENVCDQVAIINQGKVAAQGDW RTLCDFKSEIKLRAQGLTQDILNTMNSLVQNTELLSQTQEISEWRVQLSSGEAVPELI HYLSGMGIGLYEVVSLQPHLEEVFMYWVERKEREYAVHH" gene complement(2428422..2429660) /locus_tag="Dhaf_2249" /db_xref="GeneID:7259218" CDS complement(2428422..2429660) /locus_tag="Dhaf_2249" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tex:Teth514_0786 putative transmembrane anti-sigma factor" /codon_start=1 /transl_table=11 /product="putative transmembrane anti-sigma factor" /protein_id="YP_002458716.1" /db_xref="GI:219668281" /db_xref="GeneID:7259218" /translation="MACGLEQDYIQAYLDGELSREERKEMALHLQSCPGCREELQNMK KLDEWIKTALTESLTLNTGGEVSPDTQAAWEKFQARLATAPDPRPGDNALGALELPNP NTEPAQNLTKSLRTKGRWSTMKINPKRWIAGGVAAAVLASALFIPQVRVAASDMLGLL RIDKLQTVKLTPEDIEQIKANMSALHNGEIDLKGMGHMSVAGQPEPAVFTSLEAARQA GVSVPELTGYTMLRAGKQEPFSADMQIDVAQFEAFAQQLGTSVALDPKLNKESIFISF GQSSFIEYSSESNPQARLHYAVSASPQLKVPEGIDVDQVRGALLMTPLLPENVRQQLA NIQDWESTLPIPYVEGQDYSEDVKVQGNPGVFVAYSGDEQAVLIWQKDGLMHMLASQG TEAQSNKELKNSLLAMASQI" gene complement(2429660..2430217) /locus_tag="Dhaf_2250" /db_xref="GeneID:7259219" CDS complement(2429660..2430217) /locus_tag="Dhaf_2250" /inference="protein motif:TFAM:TIGR02937" /note="Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor SigX" /protein_id="YP_002458717.1" /db_xref="GI:219668282" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259219" /translation="MREDPIVATEQTAEQMAEQTPDPSDFAAVFQHYYPMVVQTIEKI LQERSAAEDLAQDVFWRLYHAPWQDIGNLKAYLIQSGINAAYNHLRTSKRQHSLWERL TRQTSANEPSAETQWLRAEEIQRVREVLTELPARDRSLLLLRFAGLSYKEISETISME FASVGKSLVRAKERFRKGYLKRGEY" gene 2430377..2431240 /locus_tag="Dhaf_2251" /db_xref="GeneID:7259220" CDS 2430377..2431240 /locus_tag="Dhaf_2251" /inference="protein motif:PFAM:PF06445" /note="PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: oih:OB0722 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458718.1" /db_xref="GI:219668283" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7259220" /translation="MLRELNHVIDYIEEHLTEELSLEIISEYAGVSDYHFRKIFFYLS GLTLSEYIKNRKLSEANKDLLQGETVTEVAFKYGYQSMDGFTRAFKKWSGFLPSDVIK KGLSKSFPKLSFVISVKGGTAMEFRIEDKPAFNLVGVSKRVPMQFEGVNKEIVKLAQS ITAEQREEMHALQNIEPYEIINASYDADADFLKEEGDLTHLIGILTTENQVSDLLEKV PVEACTWAIFPNEGPFPSMLQDTMAKIYSEWLPSSNYEVIKAPAFSFTKMNQHKKDCA YSEVWIPVRKN" gene 2431334..2432050 /locus_tag="Dhaf_2252" /db_xref="GeneID:7259221" CDS 2431334..2432050 /locus_tag="Dhaf_2252" /inference="protein motif:PFAM:PF02596" /note="PFAM: protein of unknown function DUF169; KEGG: gur:Gura_1527 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF169" /protein_id="YP_002458719.1" /db_xref="GI:219668284" /db_xref="InterPro:IPR003748" /db_xref="GeneID:7259221" /translation="MQSKIAEAIKLGNQPVAVMRSDAKPEGAMQFKEGRWGCAISLLN MAAKGQVAVFANSTTTCSGGKVGLGFRQFELGFIEHFLSVGGVGGREGEFYKKNPELA GKFALELPKVTAKEYIIFKPLSELKADETPEGIIFLANADQISALTVLANYDRPTQDN VKVNFGAGCHQTVLFTLDQVDKDEDHCFIGLTDPSARKFIDKDILSFSMTYKRFLELE EQVEESFLTKETWLKVAERI" gene complement(2432066..2433394) /locus_tag="Dhaf_2253" /db_xref="GeneID:7259222" CDS complement(2432066..2433394) /locus_tag="Dhaf_2253" /EC_number="1.7.99.7" /inference="protein motif:PRIAM:1.7.99.7" /note="PFAM: cytochrome c oxidase subunit I; KEGG: afw:Anae109_2758 nitric-oxide reductase" /codon_start=1 /transl_table=11 /product="Nitric-oxide reductase" /protein_id="YP_002458720.1" /db_xref="GI:219668285" /db_xref="InterPro:IPR000883" /db_xref="InterPro:IPR001356" /db_xref="GeneID:7259222" /translation="MKTFSGKQIARRYVLYGVFLFAIQGIVALLGATSLIFPDLPSPV SYAYGRAVHLALATFWPVIGMMGMVYYYTVEQLKADIYSPKLARWQFLILLMASAGLL GTLALGIGNGREYLDGLPVFYLGISLGLLLGAYNLIRTLWQNKQKITPAAGIMAVGAV FLCVLIIPNVLRFTNPVADEAVKFWVVHLWEEMAFELTTSGFIASFFVTAGIAEKRDI EKWLYLEATLSVIGGLFGTGHHYFWIGFPPVWLFLGTFFSLIQVLPVFLLAYLVYKGF KKHKPFSLREKLAVGLILSSIFHHLTGATLLGILITIPWINVYAHGTYITSGHAHLAL FGTIGFLVLAGAYTILSEKEPLDKKAYGYGLSGVILLNLGLIGMSSSLILAGFLQTYL WRVMGIDFMAVNSVINPYLILRVLWGSLFTLGAAILCSLIIRTWWKTRRA" gene complement(2433391..2433792) /locus_tag="Dhaf_2254" /db_xref="GeneID:7259223" CDS complement(2433391..2433792) /locus_tag="Dhaf_2254" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tbd:Tbd_0822 nitric oxide reductase, cytochrome c-containing subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458721.1" /db_xref="GI:219668286" /db_xref="InterPro:IPR009056" /db_xref="GeneID:7259223" /translation="MKLRTFILISLSSFALFAWVVKSSWALDAPMSEEAVAGKEVWQR YNCVSCHTLFGNGGYVGGDLTQITARRSPEQLSDFFSNPPVIPPHQKETHVALTEEET QAMTAYFDYLNTIPTLGWPPQPRVLEGGDAP" sig_peptide complement(2433391..2433471) /locus_tag="Dhaf_2254" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.729 at residue 27" gene complement(2434016..2434357) /locus_tag="Dhaf_2255" /db_xref="GeneID:7259224" CDS complement(2434016..2434357) /locus_tag="Dhaf_2255" /inference="similar to AA sequence:KEGG:Swol_0576" /note="KEGG: swo:Swol_0576 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002458722.1" /db_xref="GI:219668287" /db_xref="GeneID:7259224" /translation="MDHGFPIGIVDGIVKYYYNEISEFCAKTKRPIYITKNGRADLTV INSAEFDRMLEIMQLYTATLSPAPESITFHSKEELYRMLDEGLEAVRQGNVRPIEEAF PEIKRRLGFDV" gene complement(2434365..2435330) /locus_tag="Dhaf_2256" /db_xref="GeneID:7259225" CDS complement(2434365..2435330) /locus_tag="Dhaf_2256" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3266 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_002458723.1" /db_xref="GI:219668288" /db_xref="InterPro:IPR001851" /db_xref="GeneID:7259225" /translation="MDTVYYLVQNTLPVAIPLLLVALGGMFSERSGIINIALEGIMLF GAFFGCLFVYFIQGSSLNPQYILLLGMAVAALAGIIFSLLLSLATVTMKADQTISGTA LNMLVPGMILLYAKMFFNSDGITTNVNFYLRKVPFLGDLPVIGKLFFQNTYITVYIGF LFLIIAAIIFYKTRFGLRLRACGEHPHAADSVGINVYVMRYAGVSMSGFLGGMGGFFY AVGVMNSNINGHTGVAGFGFLALAVMIFGQWKPFQILLAALFFAFLRTLAYSIALIPF LHDLNINQTFYKMLPYLATMVVLAFTSQKSRAPKAEGIPYDKSQR" gene complement(2435333..2436562) /locus_tag="Dhaf_2257" /db_xref="GeneID:7259226" CDS complement(2435333..2436562) /locus_tag="Dhaf_2257" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3267 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_002458724.1" /db_xref="GI:219668289" /db_xref="InterPro:IPR001851" /db_xref="GeneID:7259226" /translation="MQDKTSLTSKPSLINKFTHSKGFSAFTAALMSIFLGFVFAFLIM ALASPDNAASGLKMLLFGGFKRLADVFYFATPILMTGLAVGFAFKMGLFNIGAAGQYT MGMFFALYVGFMWDLPDGIHWVACVIAGMIGGLLWGLIPGLFKALLNVHEVITSIMFN YIGMYLVDMLIQSNAAMYVSSKTRTAYLPASAQLPSLGIERSNANISIILAVLIAVLL YIILNKTTFGYELRATGFNKFASTYAGMNGKRNIILTMGIAGAMAGLGGAFAILAPST IQGSSMTYEPINVIAANGFNGIAVALLGSNNPLGIIFAAVFISHIQRGGTLASLYGYK PEIIDIVIAVIIYFSAFAMLMNTTVVSFFKKLFKKNQSSPSTEPSTTSSEASKELLSE KIPSKDQEISTSTKEEA" sig_peptide complement(2435333..2435491) /locus_tag="Dhaf_2257" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.482 at residue 53" gene complement(2436552..2438096) /locus_tag="Dhaf_2258" /db_xref="GeneID:7259227" CDS complement(2436552..2438096) /locus_tag="Dhaf_2258" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_3268 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458725.1" /db_xref="GI:219668290" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259227" /translation="MNDYIIEMLNITKEFPGIIANDNITLRLKKGEIHALLGENGAGK STLMSVLFGLYQPEKGEIRKNGNTVKINNPNDANALGIGMVHQHFKLVEIFTVLENII LGVEPHALGFLQKKKAREKVVELSKQYGLEVNPDALIEKISVGMQQRVEILKMLYRDN EILIFDEPTAVLTPQEIDELMEIMRRFAKEGKSILFITHKLNEIMAVADRCTVLRKGQ YVGTVDIKDTTKEELSRMMVGRDVSFRVQKETMTPGRVVLSVRNVSVPSKTSKKNAVS NVSFDVRAGEIVCLAGIDGNGQTEFVSALTGLERHTSGTITLCDQDISKASVRTRSQA GMSHIPEDRHKYGLVLDYTLEDNLVIQRYWQPQFQRFGFIRRKAVRSYAEGLIKQYDV RSGQGPLTIARSMSGGNQQKTIIGREIDKDHELLVAVQPTRGLDVGAIEYIHKQLVAR RNAGKAVLLVSLELDEVMNVSDRILVMYEGEIVGELDPKTTTVQELGLYMSGAKRNLK EGSHAG" gene complement(2438185..2439369) /locus_tag="Dhaf_2259" /db_xref="GeneID:7259228" CDS complement(2438185..2439369) /locus_tag="Dhaf_2259" /inference="protein motif:PFAM:PF02608" /note="PFAM: basic membrane lipoprotein; KEGG: cpy:Cphy_3269 basic membrane lipoprotein" /codon_start=1 /transl_table=11 /product="basic membrane lipoprotein" /protein_id="YP_002458726.1" /db_xref="GI:219668291" /db_xref="InterPro:IPR003760" /db_xref="GeneID:7259228" /translation="MKKITSVLLALLMVALLATGCGSSAPAAKDGGNSGTPSTSGQGF EIALITDKGNIDDKSFNQGSWEGVVEFAEANNVTHKYYKPEEATDAGYLAAIDLAVTG GAKVIVTPGFLFEVPIFEAQTIYPDVKFILLDGAPHTADYATFETKDNVASIMYAEEE SGYLAGYAAVMDGMTKLGFMGGMAVPAVQAFGYGYLQGAEKAAAELGLADGAISAIYH YTGDFAETDTNKATAKTIYQGGTEVIFACGGSVGKSVMSAAAEAGKKVIGVDVDQRYD SETVITSATKGLRASVVQVLESIYKTNSWNTFAGQTTYFTAANEGIGLPTTVIGDANA KAFDRFEKFTMEQYEGAFKSLVDGTVDPIRTIDVEDANGYATADELVSGLKLSKVKVE VR" sig_peptide complement(2438185..2438271) /locus_tag="Dhaf_2259" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.797 at residue 29" gene complement(2439643..2440155) /locus_tag="Dhaf_2260" /db_xref="GeneID:7259229" CDS complement(2439643..2440155) /locus_tag="Dhaf_2260" /inference="protein motif:PFAM:PF00210" /note="PFAM: Ferritin Dps family protein; KEGG: cpy:Cphy_1570 ferritin Dps family protein" /codon_start=1 /transl_table=11 /product="Ferritin Dps family protein" /protein_id="YP_002458727.1" /db_xref="GI:219668292" /db_xref="InterPro:IPR008331" /db_xref="InterPro:IPR009040" /db_xref="GeneID:7259229" /translation="MLDREVASLLNEQINKELYSAYLYLDMANYYSDNGLDGFENWFY IQAQEERDHAMLFRTYLLNNDEKVTLDTIAAPDLTYEDFKAPLLAALKHEQLVTASIN TIYAAAYEKRDFRTMQFLDWFVKEQGEEEKTSTDLISKFELFGQDPKSLYMLNQELGA RVYSAPSLVL" gene 2440384..2441187 /locus_tag="Dhaf_2261" /db_xref="GeneID:7259230" CDS 2440384..2441187 /locus_tag="Dhaf_2261" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: sfu:Sfum_2268 hypothetical protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002458728.1" /db_xref="GI:219668293" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7259230" /translation="MKQKQHQKPSFLIIGLIAIVIIGSLLYWGWPYLTLLSDPDQVRE LIIRSGTWGPLVFMLLQIVQILIAPIPGQVIGVIGGFLFGPLLGLFYTMLGATLGFTL VFLLSRKLGRPFVERFVDKKTMERFDHLTEEKGAWVFFFIFLLPAFPDDLIAFIAGLT TIPIRTLVLISVAGRLPGYAVLTFMGNGLALENLNPVVVTLVALILIFILGWWKREWL RRFVEHRNRTQFISEQWNLYWHKIIVGTIVLVIIFVFLYYAATVTPIQR" sig_peptide 2440384..2440473 /locus_tag="Dhaf_2261" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.690) with cleavage site probability 0.646 at residue 30" gene 2441300..2441719 /locus_tag="Dhaf_2262" /db_xref="GeneID:7259231" CDS 2441300..2441719 /locus_tag="Dhaf_2262" /inference="protein motif:TFAM:TIGR02481" /note="TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: aoe:Clos_1213 hemerythrin-like metal-binding protein" /codon_start=1 /transl_table=11 /product="hemerythrin-like metal-binding protein" /protein_id="YP_002458729.1" /db_xref="GI:219668294" /db_xref="InterPro:IPR012312" /db_xref="InterPro:IPR012827" /db_xref="GeneID:7259231" /translation="MIWKEKYKVGDPLIDSQHEELFSRVGSFVETLRSDKPWEQKVEK VNETLEFMKDYVVTHFADEEAYQLEIGYPHFEEHQMIHKNMVAYVVAVSREYAKEGFK EELMQQFGGKLLAWLINHVVADDQKIAEYARSKEGKQ" gene 2441716..2442174 /locus_tag="Dhaf_2263" /db_xref="GeneID:7259232" CDS 2441716..2442174 /locus_tag="Dhaf_2263" /inference="protein motif:PFAM:PF04509" /note="PFAM: CheC domain protein; KEGG: aoe:Clos_1214 CheC domain-containing protein" /codon_start=1 /transl_table=11 /product="CheC domain protein" /protein_id="YP_002458730.1" /db_xref="GI:219668295" /db_xref="InterPro:IPR007597" /db_xref="GeneID:7259232" /translation="MSTKDLLTPFSNAASQTFKLLLDLDVSTDSSQPTENCEETKEQV NIVIEITGDLAGEVMYSFPKDTTLEMVKMMSGMEFNEIDDFVKSALGEIANIISGNAM TGLSQSQVVCDIRPPKILEGGTLPAGKECSIYRTKVKTSIGDVELNFRTV" gene 2442361..2444520 /locus_tag="Dhaf_2264" /db_xref="GeneID:7259233" CDS 2442361..2444520 /locus_tag="Dhaf_2264" /inference="protein motif:TFAM:TIGR00254" /note="KEGG: cbl:CLK_1002 putative sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="diguanylate cyclase and metal dependent phosphohydrolase" /protein_id="YP_002458731.1" /db_xref="GI:219668296" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7259233" /translation="MTIHNLLSAFSLLAAVIYMSFGIYTYRQSPQSRIHQSFLLLCLS YSIWSFAYAFAYLAQDAFAFSFWNKLSALGWCSFSALILYLVLHITESPLVKNAGIKF MIFLPGFVFYVLAVFFFGPNLETPTQVVKFFYVGDFLYDFSYLLIAIALMFKWGYVSP HIRIKKQSRILVITSLIPFLLNLMTQTILPALLHIDLPGMGQLYSLIMIFGVFVVVTR YNFFKLPESIIMQEIMNETLDMVIVADQEGRIRKVSSQMKALLGYDADEVIDHTLGFL FREGDQGKFDLLQMKNRDLKYTDIEVIKKDQGTLPVNVVCKQIKDRRLQDVIGFVFIL QDSRLVNELRQKNEELFWEKERYKLSLQSVKEKQEKIEYLSYHDQLTGLYNRRFLEEK LTRIDFNQDLPLTITMADVNGLKLVNDSFGHAYGDLLIRKVAEVIQEGCRQDDVVARI GGDEFIILMPRTTEFEARRVIKVIKAMAVQEKIGAFELSVSFGYETMETSEKSISELL KKAEDYMYKNKLSESPSIRSNTIDTIIKTLHEKNKREEQHSHRVSELCRKTATELDCS NDEIEELKTVGLLHDIGKIVISEAILNKPGKLRDDEWKEIERHPEIGYRLLCTIKEMS EMAEYVLAHHERWDGTGYPKALKGKEIPLQARIIAIADAYDAMISERSYRKALPEEVA VAELIKNAGTQFDPELVKVFVEKVLGKKIYSESGCVH" sig_peptide 2442361..2442438 /locus_tag="Dhaf_2264" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.758) with cleavage site probability 0.433 at residue 26" gene 2445260..2447722 /locus_tag="Dhaf_2265" /db_xref="GeneID:7259234" CDS 2445260..2447722 /locus_tag="Dhaf_2265" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; KEGG: bha:BH0714 excinuclease ABC (subunit A)" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458732.1" /db_xref="GI:219668297" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259234" /translation="MADIFLHGVREGNLKDISLTLPRNKLVIFTGLSGSGKTTLAIDV LYQECQRQYLEAIGYQGIHKPKLDELRNASPAVRITQNEYRKNPRSTVGTVTNIYTEL RMIYEKLSQRTCPHCHRDIRADQCQEELEKREDEFKVYMYCNHCGHKMDKLTRTYFSY NTREGACPTCQGLGKILQVNKDNVVNEKLSLEAGAVDFWEQKYKDYQISVLYNAFQHY GVPIEPDTPVREFTNVQKAILFYGVDSDQVKEFFPDIQAPKTVGGGRFEGIYPVLWRR IAEKSGDPRGLSAYFAEQICPDCAGERLNGLSRSVTVLGTRLPELASLSLEELQDWLI KLEDSVTGTHQDLVASYLNDLKTKIRRIIKVGLGYLSLDRQTMTLSGGEAQRIKLAAT LDSTLTGIIYIMDEPTIGLHPQDTQGIIQILKELRDLGNTVIVIEHDMDVMSAADFIV DIGPGAGKLGGEIVGQGSIDELKEQGRSVTGLYLNRPVREARSYRKGTGEFIEVQHGD LYNLKNINVRFPVGCLISVTGVSGSGKSTLVFEVLAKGKYRSQGDPMKRNHVAGTELF EQIITVEQSPVTRMKRSNVATYSGVYTEIRKIFGNLSEARRKGITPRHFSFNSRGGRC ENCEGLGYVVSNMLFFEDLEVSCPVCHGDQFQDEVLSVKYQGHSIKDVLGMSVEEALA VFALHPRITKVLELLEEVGLGYLELGQTLTTLSGGEGQRLKLAKELIGNEGKTNLYLI DEPTTGLHPLDVENFLALLNRMVDAGSTVIVVEHNQQVMQASDWIIDLGPEGGHKGGR VMAVGTPEQIKSEPDSVTGRFL" gene 2447778..2448548 /locus_tag="Dhaf_2266" /db_xref="GeneID:7259235" CDS 2447778..2448548 /locus_tag="Dhaf_2266" /inference="protein motif:PFAM:PF03747" /note="PFAM: ADP-ribosylation/Crystallin J1; KEGG: gur:Gura_1972 ADP-ribosylation/crystallin J1" /codon_start=1 /transl_table=11 /product="ADP-ribosylation/Crystallin J1" /protein_id="YP_002458733.1" /db_xref="GI:219668298" /db_xref="InterPro:IPR005502" /db_xref="GeneID:7259235" /translation="MLGAVVGDIIGSVYEFANIKSKDFPLFSSRSRFTDDTVLTMATM DALIHKLPFGEAYRAWFQRYPQAGYGRSFKAWAESGQNEPYNSWGNGSAMRVSPIGFY YKTLDEVLAAAKQSAEVTHSHPEGIKGAQATAAAVFLAKHGETKSKLKETVEQEFGYN LNEPLAKIRKGYTFDVSCQGSVPQAIRAFLESENFEDAIRNAISIGGDSDTIACITGA LAEAYYGHVPEEIKKQALTYLDDPLQALLNSFYEVAQD" gene 2448734..2449633 /locus_tag="Dhaf_2267" /db_xref="GeneID:7259236" CDS 2448734..2449633 /locus_tag="Dhaf_2267" /inference="protein motif:PFAM:PF02588" /note="PFAM: protein of unknown function DUF161; KEGG: lsp:Bsph_4761 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF161" /protein_id="YP_002458734.1" /db_xref="GI:219668299" /db_xref="InterPro:IPR003740" /db_xref="GeneID:7259236" /translation="MVEEEVVVQACLTRNHQKMKIRSLVKRAFFITFGAVAMAFGLEG ILIPNHIIDGGVTGVSMMLSHLTPIKLGVFLFLLNLPFFFLGYKQIGKTFAVSMLYGI LTLAVSTFLMHDLAPVVHDEILAVVFGGLMLGFGVGLVIRNGGVLDGTETLAILIEKK LPFSVGEIIMIINVIIFSVAAFVYGLENALYSMLTYYIAFKTIDIVVKGFEDMKSVYI ISECNQIIAETIAQRLGRGVTYLRGEGSFTGDDKNIIFCVFTRLEEAKMKDIIREIDP SAFVIISDVGEVKGGRFKKRDIH" gene 2449945..2452206 /locus_tag="Dhaf_2268" /db_xref="GeneID:7259237" CDS 2449945..2452206 /locus_tag="Dhaf_2268" /inference="similar to AA sequence:KEGG:Cbei_2724" /note="KEGG: cbe:Cbei_2724 ATP-dependent DNA helicase replicase" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase replicase" /protein_id="YP_002458735.1" /db_xref="GI:219668300" /db_xref="InterPro:IPR014016" /db_xref="GeneID:7259237" /translation="MQDDIKGQGNQEGGQAEEEQHYLSEVLDLVNQQMEEELKNAALS KEELIAFRKEMYEDTVHYSRDFARLTEMNQYLAVVKNQTEKYTHTARRVERYKKILGS PYFGRFDFQEEGYDQEKIYIGLYNVIDARTQDVRVYDWRAPISSIFYRYELGEARYQA PQGEIIGEVSLKRQYKIRHSQLKYFFDSNLRITDDALQEILGRNSSPTMRQIVETLQK EQDEIIRDRSNEVLIVQGVAGSGKTSIALHRIAYLMYEGFNSRLRSNNILIISPNDVF CQYISTVLPELGEENVLQATFDDLTGRVFPGRFRVETRDQQLELLLNRQNTPLGSRKE KNIMFKGSRSFLKILERLIYHYGHRLIQFEDVYYHGQLIESKQLIKSRFLNNKIGIPM TKQLKRIEKTLWERIHPLQKKRRAALTRLVAVNPEHLLEIKPYARLLALREAHALMEK IHSFTEVDYQGVYERLLKDRRLFGKLAQGLELPEGIEELLEGTLEDIAKGELSYEDSA ALFYLKLRLEGEHYSDIRQVVIDEAQDYSPLQYQVFKLLFPNAHFTILGDVAQTIERT GDEAAYDQVKEIFACPHTLKLTLTKGYRSTFEISAFAQRIYGESRGGFPFERHGPEPE VKLAANLQEMTGKMLRDIAAFQEEGFETIAVIGKTFADCQEIYKKLHQKIKVSLVHPR EGEMEKGVLIIPAYGAKGLEFDCALIHGADAQNYQSELDKRLLYIACTRALHRLQLYA VGEKSPFLRFSAH" gene 2452304..2452660 /locus_tag="Dhaf_2269" /db_xref="GeneID:7259238" CDS 2452304..2452660 /locus_tag="Dhaf_2269" /inference="protein motif:PFAM:PF03960" /note="PFAM: arsenate reductase and related; KEGG: cth:Cthe_1508 hypothetical protein" /codon_start=1 /transl_table=11 /product="arsenate reductase and related" /protein_id="YP_002458736.1" /db_xref="GI:219668301" /db_xref="InterPro:IPR006504" /db_xref="InterPro:IPR006660" /db_xref="GeneID:7259238" /translation="MQFICYSRCTTCQKARKWLEEKEHSFEVRDIKGDNPTFAELQTW YKLSGLPLKRFFNTSGQQYKSLNLKDKLPKMTEEEQLKLLATDGMLVKRPLLLGEDFV LTGFKEAEWEERLNKS" gene 2452841..2454154 /locus_tag="Dhaf_2270" /db_xref="GeneID:7259239" CDS 2452841..2454154 /locus_tag="Dhaf_2270" /inference="protein motif:PFAM:PF05525" /note="PFAM: branched-chain amino acid transport system II carrier protein; KEGG: aoe:Clos_2698 branched-chain amino acid transport system II carrier protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport system II carrier protein" /protein_id="YP_002458737.1" /db_xref="GI:219668302" /db_xref="InterPro:IPR004685" /db_xref="GeneID:7259239" /translation="MKLSSKDILITGFALLAMFFGAGNLIFPPMLGLQSGDQLSWALL GFIATGVGLPFLGVTAVAKAGGDLELLANRVHPAFSKMITTISVLCIGPLLAIPRTAA TTYEVAIAPVTQSIHPQLALLLTSVVFFIIVLFFVLRPAKILDSVGKILTPFMLVFLT LIIYVGVTHPLGTMAQSSYTNPFSQGFLEGYNTMDAIASVIFGMIIVKGIKDKGVTDN NQIARITIIAGMIAAAGLGFIYIGLAYIGATTGTLFTGTNHGQMLIFVSESLLGVLGR TVIGVVMALACLTTAIGLVASCGEYFSRLTHNRVSYNTVAIITTLVSFILANMGLANI LKISVPLLEFVYPIIIVLIMLALLHNFYKGKRAVYVWTTGIIVLFVILDTLYDLGASL GINLAFIRDGLNLLPFYHLGLGWLVPAVLTLVLSVVFTANKSVKA" sig_peptide 2452841..2452948 /locus_tag="Dhaf_2270" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.895) with cleavage site probability 0.514 at residue 36" gene 2454412..2454927 /locus_tag="Dhaf_2271" /db_xref="GeneID:7259240" CDS 2454412..2454927 /locus_tag="Dhaf_2271" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbf:CLI_0918 ECF subfamily RNA polymerase sigma factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002458738.1" /db_xref="GI:219668303" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259240" /translation="MGIFGTKGVDKKTYVALVTEYKSTMYRLAFGYLGDADKALEAVD EAVYLGYVHRKELREPVFFKTWLTRILINECYRLLRMGKREVIMEALPEQGQSFPEGT LSLKMAIQGLSEDLRKVIVLRYFGGYTIADTAALLGIPEGTVATRTRKALRLLRVELS DQEGGEQYDRG" gene 2454914..2456338 /locus_tag="Dhaf_2272" /db_xref="GeneID:7259241" CDS 2454914..2456338 /locus_tag="Dhaf_2272" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tpd:Teth39_1845 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458739.1" /db_xref="GI:219668304" /db_xref="GeneID:7259241" /translation="MTEDNQDMSKNSLNGGQGWEALLAEAHAEPEGLDFVEERLENRI GLNKRKKRRKRAIYSSLSTVAAALVFVFLVNTNGAFAQTLSRLPVIGQLIEYIQFDKS LSRAIENEYIQEVDLTAWDGDKGLGLPYVLADAKNLVLFFQLPDDFELAADEWAHIYL KEMREGRTGEKLEGFAYTTSSLSPEGREENHGFIMQRYHFPEGELPEQISFDVLLELE NLPREKSEAPVGEFAEDAYEHQMQEIGSFTFEVKFNEFAEPIVSEFHEQLSIRGQSIT LEEMRVYPTGTEVSFAFADENTSWVKGLDLTVAEEGESVLRGSQGISAIYKEDYSGMT VFIESDYFDKPKEQELWIRGLRLLDKEEEFITVDLEKKTITPAIEGMELKEVIKGEEK ANLVFATKVMGEEAFGAFAFDYQDEQGNTYTLKNMGTSSSQNSWMETHITVDYPESGR IILQRVSSPLLILEEPIRIPLPQR" gene 2456449..2458089 /locus_tag="Dhaf_2273" /db_xref="GeneID:7259242" CDS 2456449..2458089 /locus_tag="Dhaf_2273" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: ckl:CKL_2729 hypothetical protein" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002458740.1" /db_xref="GI:219668305" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7259242" /translation="MKINKKRFAIAILLIAILVLTGCTANQKAIFDASMKMQKVNSIQ QHMTLSMELKGTGLDPMIQEQVDQVAAMLNDTKIELNLKTKTNEKQTMVQSQADMNFS MPGLEMKMPLWIDMDLTGDQPKFLEIIQMPLMAKASLPPEYMSKEYMVMDLANTSSSE LAPMDMTKLMDFSVNFQTKWTDFLISYADRFNPGLEVVSVPVQDPSIQKYAIHLDDKA FKALLSYTVNNFAQDKEAQGFLNDYFQAVLDLSGGASSFEGALDAEEMFGDSESSAEA LSQFNAILDSLQDVTLVGESGIQLIYTISDGYITQTEGSFDLQIDLAQMAGLLNIPSE DEESTEVSGILNFIINYKAENSNINQPLDIQIPELSTENSFDYFEFMEASLSALENVE VGVEEVIQEPAPEPGPEPVPPAANSSEESVAAASAPTDYTVQPGDTLATIALNHYGSY EQHAGIYQANLAAFKKNGNRLDAGMVLTLPAEGLLAPLPAENVKQVYTVKAGDTLGSI AKQIYGDSSLYTKIYEANQERLKSPNLIFEGQKLVIPN" sig_peptide 2456449..2456526 /locus_tag="Dhaf_2273" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.637 at residue 26" gene 2458398..2458706 /locus_tag="Dhaf_2274" /db_xref="GeneID:7259243" CDS 2458398..2458706 /locus_tag="Dhaf_2274" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458741.1" /db_xref="GI:219668306" /db_xref="GeneID:7259243" /translation="MNLEQAFHESSAGLLVTDADFKVIWANHFEEEFYNKPVIGLEVV DCHRSENREKISEFLAQFKAGAMKEFTKTAVGMIITYSSYTVDGEFAGLVRTRIRLPK" gene 2458855..2459235 /locus_tag="Dhaf_2275" /db_xref="GeneID:7259244" CDS 2458855..2459235 /locus_tag="Dhaf_2275" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; KEGG: cpy:Cphy_3903 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002458742.1" /db_xref="GI:219668307" /db_xref="InterPro:IPR000524" /db_xref="GeneID:7259244" /translation="MDIIISNSSGKPIYEQITSQIKNLIITGELKPGEALPSMRLLAK ELRISVITTKRAYEDLERDGFIQSIMGKGSFVAAQNTEFIREEHLRKVEEYLQKAIET AKLSDISLEELMEITAMLYKEGEE" gene 2459236..2460084 /locus_tag="Dhaf_2276" /db_xref="GeneID:7259245" CDS 2459236..2460084 /locus_tag="Dhaf_2276" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458743.1" /db_xref="GI:219668308" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259245" /translation="MENVLETKNLSKRYQEFELKNVSFSLPKGCIMGLVGENGAGKST TIKLLLNLIRRDGGEVKILGKDNLNHEKEIKEDIGVVFDESNFPDNMNAADISLVMNN IYRNWDQKLFDGYLRRFSLPPQKKVKDYSRGMKMKLSIAAALSHHPKFLILDEPTSGL DPMVREEILDIFLEFIQDEEHSILISSHIISDLEKIADYITFIHKGKILFSEAKDQLL EDYGILKCSHTELDQLDKGLIMGYRKNQFGVEALVKRKKLKGKFLIDSAGIEDIMLFY SRGVGK" gene 2460081..2460704 /locus_tag="Dhaf_2277" /db_xref="GeneID:7259246" CDS 2460081..2460704 /locus_tag="Dhaf_2277" /inference="similar to AA sequence:KEGG:CKL_0383" /note="KEGG: ckl:CKL_0383 predicted transporter protein" /codon_start=1 /transl_table=11 /product="transporter protein" /protein_id="YP_002458744.1" /db_xref="GI:219668309" /db_xref="GeneID:7259246" /translation="MKGLIIKDIFALRQQGKILLALLVFYAVYSVVFQNLSMLAGMIV LLCVMLPVTTMAYDEKSKWDKYALSMPIPRKTIVLSKYLFAIIAEFLAVIIIGILGGI IVFFTGEMVIGEMLVMTLALGGAGLFFLALVLPILFKFGVEKARFIMLLAFFIPSMIV MMLPQLGIEPPSAQTLRFLGYLSPLIVAGLLLFSVKISIGIYNKKEF" gene 2460863..2462476 /locus_tag="Dhaf_2278" /db_xref="GeneID:7259247" CDS 2460863..2462476 /locus_tag="Dhaf_2278" /inference="protein motif:PFAM:PF03323" /note="PFAM: GerA spore germination protein; KEGG: bcz:pE33L466_0139 spore germination protein KA" /codon_start=1 /transl_table=11 /product="GerA spore germination protein" /protein_id="YP_002458745.1" /db_xref="GI:219668310" /db_xref="InterPro:IPR004995" /db_xref="GeneID:7259247" /translation="MLKELIQKALSQGNEKNANEKDQWEVQAKALDHSLQENLQSLQQ IFERCGDITFREFKINAGESIDAALIYFQEITDAKKISEYMLGPIMMHETSGAADDGQ PVAEKIVDFVRNHLSTAANVETARDIGELTKGILDSKVALLIEGAPAALLMDAHGERA RSIAEPDSEPVVRGPKDGFVECLATNVMLLRRRIRTSRFKMEAFEIGELTRTKVGVCY IQGIADNKIVEEVKIRLHRIKIDGVLASGYIEEMIQDESLSNFPLIFTTERPDRVAGC LLEGRVAIMVDNTPVSLVVPCTFMTLLQASEDYFTTAEFSTFIRILRFIGLNFSLMLP ALTVAVFSFHQELIPLPLLATVAGARQELPFPIFLEILAMEITFELLREAGVRLPKTI GQAISTVGGIVIGQAAVNAGFVSPLSVIVVALTAISSFTIPNYPAGTSIRILRFFLLV CSAILGIVGVMFALMFILFHLNSLRSFGVPYLTPFAPYSLKDLKDTVVRAPWWAMLAR PRLVNEGTERQARNQGPQKPDQEGGDSHR" gene 2462478..2463563 /locus_tag="Dhaf_2279" /db_xref="GeneID:7259248" CDS 2462478..2463563 /locus_tag="Dhaf_2279" /inference="protein motif:TFAM:TIGR00912" /note="TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: pth:PTH_1839 hypothetical protein" /codon_start=1 /transl_table=11 /product="spore germination protein" /protein_id="YP_002458746.1" /db_xref="GI:219668311" /db_xref="InterPro:IPR004761" /db_xref="GeneID:7259248" /translation="MRISASQFAVLLFLTIMATAVLVVPSITAKTAGQSAWMVPALAA GLGCLTLWLTTKLNRRFPEKNLIQYSRTIAGKYLGKMIGIGYMIFFLVFSFLIVQQVA EVLYFFLLKNTPPWFLALCFILVCSYGVFQGIEVIARTAQFVLPLFVLSFLSIVFFAF QDMQLKELMPLLEGGMYPIIRASVVPGSWFGECIILAFLFPHIHKQKEIFRQGFWAIL AAAVFFTGNILLTVLILGPELTANYDLPFWLVIRFIEVGSTFLRIETVIVFLWISAVV VKFTLIYYLGCVTTAEVFGWKSYQRIVIPFGLVLAAASNFLLNNSMELNSFLSNYWPP FAYVFELVIPGLLLAAAVLLKKGRKAQ" sig_peptide 2462478..2462567 /locus_tag="Dhaf_2279" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.479 at residue 30" gene 2463560..2464735 /locus_tag="Dhaf_2280" /db_xref="GeneID:7259249" CDS 2463560..2464735 /locus_tag="Dhaf_2280" /inference="protein motif:TFAM:TIGR02887" /note="TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: bld:BLi00454 GerKC" /codon_start=1 /transl_table=11 /product="germination protein, Ger(x)C family" /protein_id="YP_002458747.1" /db_xref="GI:219668312" /db_xref="InterPro:IPR008844" /db_xref="GeneID:7259249" /translation="MKKKAHGLLVISLLASVLLMNGCWDSREVEDLAVSTLVAWDRVT VEGKDLWQISTRILDLRVPQGSGGKKDSSARELLLKGTGITIQDAFNNLVKRLPATDF VEHNVAIIIGERVAREELPNIMSADLRLPFSRISVDMFVCEGEAYKILQAEPELSSTL SKEVRKIADKTMEESGAALKMTALDFSKQLIRKDRDTVLPRIRIYSKQEGEESVETSV EIQGFGVIRDSELVGWLEDEEALGYVLSVGRPTNPEIPLAVTVGDVLFSFYMTNTKGQ ISSGLVEGKPKFTIHIKADGVVHEASVPMLNEEDRPVLEKAIEEKIIDVVWKTVAKAR ECDADIFGFNEHLHRYHLKEWKTIAPEWRSYFRDAEIEVEVDAEIKAFGTSNTGFDF" gene 2464857..2466095 /locus_tag="Dhaf_2281" /db_xref="GeneID:7259250" CDS 2464857..2466095 /locus_tag="Dhaf_2281" /inference="protein motif:TFAM:TIGR00710" /note="TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_3402 hypothetical protein" /codon_start=1 /transl_table=11 /product="drug resistance transporter, Bcr/CflA subfamily" /protein_id="YP_002458748.1" /db_xref="GI:219668313" /db_xref="InterPro:IPR004812" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259250" /translation="MQGVTESRQDKMGQKHLGRKGLIAFIVLMNMFIPLSMDLYLPAL PKMNEYFGSSAAITNLTLSLFFLFYAIAILVWGPLSDRYGRKPIIMVGSAIYIVSSIA CALSTNITLLIISRACQGIGSGGITSASMAIIKDCFTGKSRETILAVTQAISGLAPML APIVGAWILYFTDWRGSFWLLAFISVINLVLTILYQETLREEERYRGSLIGSWSRLAV VAGNKSFIIPTLIFALGSIHFMGYIAVSSYVYIDYFGLSEQMYSYFFAANAFISILGP AIYIRFFLNFNKKRLAVLCFGLSALSGILIMTLGQLSPYIFLMGIVLMSLAGTVMRPF STNILMEQQKGDAGSMSSILNMSFTLFGSLGMAIASISWGNIVAGLGALIAVGSGISI LAWYAFMKSDIPCAGVKDSQ" gene 2466128..2466694 /locus_tag="Dhaf_2282" /db_xref="GeneID:7259251" CDS 2466128..2466694 /locus_tag="Dhaf_2282" /inference="protein motif:TFAM:TIGR02258" /note="TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: cth:Cthe_0503 2'-5' RNA ligase" /codon_start=1 /transl_table=11 /product="2'-5' RNA ligase" /protein_id="YP_002458749.1" /db_xref="GI:219668314" /db_xref="InterPro:IPR004175" /db_xref="InterPro:IPR014051" /db_xref="GeneID:7259251" /translation="MVDQNIRAFLGIDFTEEVKDEIHELQQNLKGYALKGRWKGRDNF HLTLKFLAQISFAQKAQIDESLQSLCRKEKPFNLELKGLGVFGGKESCRVLWLGLAGD MQDLRSLHKKVDQVLTPLGFPPERRPFSPHITLGQDIVFAGGFEEIQAKVGGFEFTPT HVERIHLFKSEQVQFKRIYTKLADYSLG" gene complement(2466803..2467402) /locus_tag="Dhaf_2283" /db_xref="GeneID:7259252" CDS complement(2466803..2467402) /locus_tag="Dhaf_2283" /inference="protein motif:PFAM:PF00578" /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: cpy:Cphy_0735 redoxin domain-containing protein" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen" /protein_id="YP_002458750.1" /db_xref="GI:219668315" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR013740" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017937" /db_xref="GeneID:7259252" /translation="MNSKTKLILGIIAFVLFLGIAYTAYSSLSENYGPTQEPMTQGQD KPDAQSADPAAQEEKKTEAPNFTVYGTDGTEHRLSDFRGKPVVLNFWASWCPPCREEM PHFNEVYAQYKDDVAFLMVDLVDGQRETEESGQAFVDKEGYDFPIYLDKNHQAASVYG VSTIPTTLFIDGEGYIVTGYRGPLKKSTLETILKDMLKQ" sig_peptide complement(2466803..2466874) /locus_tag="Dhaf_2283" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.470 at residue 24" gene complement(2467449..2468120) /locus_tag="Dhaf_2284" /db_xref="GeneID:7259253" CDS complement(2467449..2468120) /locus_tag="Dhaf_2284" /inference="protein motif:PFAM:PF02683" /note="PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cpy:Cphy_0831 cytochrome c biogenesis protein transmembrane region" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein transmembrane region" /protein_id="YP_002458751.1" /db_xref="GI:219668316" /db_xref="InterPro:IPR003834" /db_xref="GeneID:7259253" /translation="MQYLLLFLEGVITFISPCLLPMLPIYISYFAGQGANDKKIRTLT NALGFVLGFTLVFVALGAFAGTVGSFLRDYNQVINLVTGLIVVLFGLNFMGVIRIPFL NTNRQVNMKVVNLGFFSSLLFGIIFSIGWTPCVGAFLGSALMLAASEGESLKGIFMLL CFSLGLGIPFVASALLIERLKSTLDFIKRNYRIINLISGGLLVLVGVLMATGMMGYFL TLLTF" gene complement(2468204..2469736) /locus_tag="Dhaf_2285" /db_xref="GeneID:7259254" CDS complement(2468204..2469736) /locus_tag="Dhaf_2285" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cpy:Cphy_3428 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458752.1" /db_xref="GI:219668317" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259254" /translation="MKNKIALKLTLYFSLSLLLFSLIIGSVFMTLFKNQTVQLHKVDM EKRATSIAGTLSTLISNSNAAATQGNEAGGTNGMNSANRMGGMMHGMGMGGMGGMMYG MGGYSSYLQFLDEIAMADVWLVDETLQLMTIGHMTNRQINYADLPADADQVVKEVFQG NTTFSEGFSSLLNTPTLTVGAPIKAGEKVVGALLLHSPIQGTKEALQQGAGILAMSIT VALLLSLLLSIVLAYTFTKPLNRMKNSTLQLAKGDYLAKTGVQQEDEIGELASAIDIL SERLESASHESDRLEQQRRDFIANISHELRTPVTVIRGSLEALCDEVISEPDQIKAYH RQMLKESIFLQHLVNDLMDLTRLQNPDFKIEMENTSLGDLLRDVLRSAQNIACGKGIL LKTDIEPEAPLCSIQGDYVRLRQMFLIILDNAIKFSPAEEEVWITFANNTVAIRDKGP GIPPENLPHIFDRFYKSSAVENKTGTGLGLAIAKQIAHRHRIQITVDSQPGQGTQFSF HF" sig_peptide complement(2468204..2468305) /locus_tag="Dhaf_2285" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.682 at residue 34" gene complement(2469726..2470421) /locus_tag="Dhaf_2286" /db_xref="GeneID:7259255" CDS complement(2469726..2470421) /locus_tag="Dhaf_2286" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpy:Cphy_3429 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458753.1" /db_xref="GI:219668318" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259255" /translation="MLTLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQL QPDLVLLDVMMPKVDGFEVCREIRKTSNVPIIMITARGEDFERIMGLDIGADDYIVKP FSPGEVMARIRAILRRISQNDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEI LWTLATNHNRVFSRDNLLNSVWGYDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIW GVGYKFGEKTNEE" gene 2470585..2471031 /locus_tag="Dhaf_2287" /db_xref="GeneID:7259256" CDS 2470585..2471031 /locus_tag="Dhaf_2287" /inference="similar to AA sequence:KEGG:Teth514_2214" /note="KEGG: tex:Teth514_2214 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458754.1" /db_xref="GI:219668319" /db_xref="GeneID:7259256" /translation="MKKFKKAILIGAIVLGVGASSSTVLAASAYNNPVEALAGITGKT VESVLTEQYETGKSLGVMANEAGKLDEFQKELLEMRKDALAQRVESGNLTQQQADQMI TAMEENQAYCYGDGYGRGRGMMGAGNGGMLGRGQGGCGGFGYNQAR" sig_peptide 2470585..2470665 /locus_tag="Dhaf_2287" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.966 at residue 27" gene complement(2471130..2471801) /locus_tag="Dhaf_2288" /db_xref="GeneID:7259257" CDS complement(2471130..2471801) /locus_tag="Dhaf_2288" /inference="protein motif:TFAM:TIGR00628" /note="Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine" /codon_start=1 /transl_table=11 /product="uracil-DNA glycosylase" /protein_id="YP_002458755.1" /db_xref="GI:219668320" /db_xref="InterPro:IPR002043" /db_xref="InterPro:IPR005122" /db_xref="GeneID:7259257" /translation="MQILKNDWHELLKDEFEQEYYQQLRKHLIQEYRTRTIYPDMYDI FNALHFTSYQDVKVVILGQDPYHGPNQAHGLSFSVKPGVPAPPSLQNIFKELQSDLGC RIPNHGYLKKWAEQGVLLLNTSLTVRAGQANSHAQIGWHQFTDKVIAALSQRQDPVVF ILWGKNAQAKQSIIGSQHFIIKSVHPSPLSAHAGFFGSKPFSKANNFLVSQGKEPIDW QIEDI" repeat_region 2471916..2473509 /note="ISDha2" gene 2472095..2473339 /locus_tag="Dhaf_2289" /db_xref="GeneID:7259258" CDS 2472095..2473339 /locus_tag="Dhaf_2289" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: drm:Dred_1795 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002458756.1" /db_xref="GI:219668321" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7259258" /translation="MQDKDTTHSTFMQAFQPLFSKDLWKDIHQQVPDLDRRTQKLKTN QLTLLISNAQLQEYRALRKISTSVLSDNLGQAIGLKSISHSQISRRLKTLPTKVSEML FRRTLHKVAQKQGYGKIRQQLGKLYMIDASTISLCLSRYPWAVFRKSKAGVKIHLRLS FDGIALPDEVVITPAKIADRKKLDELIVEDKDALNIFDRGYVDYELFDDYCEKGIRFV TRLKNNAIMEFTGVERPVEEDGIIEEDVDIILGTGSRKMKHTLREVTIDDTINEPFTI LTNDFELSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVTNQILLALMTYC SLMLLKLEVEYPRDLLTLQRLLITCLFESYEEFLEKLRRRRRKAAKRINHEKIYQMTE HYIITEEDTGWLNDLIYDPVIL" gene 2473536..2476463 /locus_tag="Dhaf_2290" /db_xref="GeneID:7259259" CDS 2473536..2476463 /locus_tag="Dhaf_2290" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cno:NT01CX_2347 diguanylate cyclase/phosphodiesterase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase" /protein_id="YP_002458757.1" /db_xref="GI:219668322" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="GeneID:7259259" /translation="MGIISTHNLMKKLLIILIALIILFIGQKPLLIQAQTNQRVLFIS SYSESFATVPEQIAGIHQALDPHNILLDIEYMDTKRFDTQENIDNFFTALRYKLDNLQ PYDAIIVGDDRALDFAMAYQKELFDELPIVFLGINDVNRAEEAACNPYMTGIVESVPI KENIELALKFNSNVQRVVGLVEGSITGRGEKDQFYGAVGFYPSLRFEDISISEHTTEE MADILQEIQDDTIILFLGSMYKDQAGLDLTIDEAAAFISANTQVPVYRATSGGVGQGF LGGVQVSYRETGKRAGGMVFQLLQGTPVQDLPMMNESPYYTIFDYQMVQHFDIPESLL PHDALLLNKKSSYFEQNMKLLLGVFAALFIMLIISTLMGMDSLKHRTMQRKLRESNEE LSATYEELAATEEELRHQYRLIEENVRRIELLNQKYEHAINSTNSVVWELNLSNRSIY FSRNFENWLSRPFPWHEPVDQLMDKYLNEKIVQLLNEEIAAYLNGEKSEIKVEFPVKS SAKPSRWIKAQGKAIRGSSEEEIFLYGIMTDVTDQKLQEEYIDHLAHYDYLTNLPNRI SFMEKLQEEIEKALPLYILLMDIDNFKEINDTLGHVWGDKVLKAVAQKLLDHACPNMF ISRFGGDEFLILMTDRDSCDIEECIKQIRIMFSQPISIERNEFTLKFSMGITRYPEDS TDIDQLIMNADTALYQVKRSGKNHHLLYNKEMQQELRNKAVTEGIIRKAVQEDGFYLV YQPQVNVKTGEIESFEALVRLKHHPISPDVFIRIAEESDLIYQIGRVVTKEAIRQAAA WRDKGYPRKSISINFSSKQIRDRDYLQFLVDTLAEYEMDPQCLEIEITESILLEETHL TLELLEKIKELGIKIALDDFGTGFSSLNYLTYIPVDKVKLDKSLCDKFLSPDNIKVIE SIISLAHSLNLVITAEGIEEQWQYEQLKLSGCNSIQGYLFSKPLVAEEAEKIYEKNFL DSF" gene 2476525..2476953 /locus_tag="Dhaf_2291" /db_xref="GeneID:7259260" CDS 2476525..2476953 /locus_tag="Dhaf_2291" /inference="similar to AA sequence:KEGG:Cphy_1778" /note="KEGG: cpy:Cphy_1778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458758.1" /db_xref="GI:219668323" /db_xref="GeneID:7259260" /translation="MNGNAELLNFVYQNSQMGVATLNQLIEIVEDGEFKNHLKSQYKE YQEIHRAAEAMLNEKGFDEKGIGTLEKIRTYLMISYETLTDKSPSHMAEMLVIGSTMG VINAIKKIKNYQGAEPHILKLMERLLRFEENNVQELKAYL" gene 2477112..2477492 /locus_tag="Dhaf_2292" /db_xref="GeneID:7259261" CDS 2477112..2477492 /locus_tag="Dhaf_2292" /inference="similar to AA sequence:KEGG:Cbei_3552" /note="KEGG: cbe:Cbei_3552 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458759.1" /db_xref="GI:219668324" /db_xref="GeneID:7259261" /translation="MDDFTREDREEALRAIASMINRTEKAKEKFAQGISQHTLQMNRL KALHIASSLISKGLTKSDAVECYTEEDLKNALAPITSLISKSEKARVKLAQGTWQHTM LSNNLKALHIALPLLTKALHEVSQ" gene 2477489..2477878 /locus_tag="Dhaf_2293" /db_xref="GeneID:7259262" CDS 2477489..2477878 /locus_tag="Dhaf_2293" /inference="protein motif:TFAM:TIGR00586" /note="TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: cth:Cthe_1486 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="mutator MutT protein" /protein_id="YP_002458760.1" /db_xref="GI:219668325" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR003561" /db_xref="GeneID:7259262" /translation="MKDVTAAIIIKGQNILIARRAPGEQHGGSWEFPGGKVEPGETPE ACLKRELGEEFGIEAEVQEYISSSLYEYPQGSIRLLAYQVKIRQGEIQLRVHDRYEWV GVTQLLNYELLPADVPIAHYLPQWMCP" gene complement(2477860..2478912) /locus_tag="Dhaf_2294" /db_xref="GeneID:7259263" CDS complement(2477860..2478912) /locus_tag="Dhaf_2294" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: mla:Mlab_1678 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002458761.1" /db_xref="GI:219668326" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7259263" /translation="MTSKKTSAIFFAILAALLFGISSPVSKLLLTKIPPTMMAALLYL GAGLGMCVVRLFNHRQGTEVKEARITQKDFPYVLAMIILDIAAPVFLMVGLTLSSAAH ASLLGNFEIVATSLIALLIFQESIGKRLWAALALITLASIILSVEDLSSFTFSLGSLF VLLSCICWGFENNCTRKLAIKDPMDIVILKGFGSGLGALFLALFLKETLSGIGYILGA LMLGFVAYGLSIFFYVRAQRELGAARTSAYYALAPFIGVGLSFAIFREMPNASFLVAL GIMIAGAYLASSEDHAHLHEHPAITHEHRHSHKDPHHSHSHSDSFAGEHSHVHTHMPL AHSHHHTPDIHHGHIH" sig_peptide complement(2477860..2477943) /locus_tag="Dhaf_2294" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.703 at residue 28" gene complement(2479092..2479586) /locus_tag="Dhaf_2295" /db_xref="GeneID:7259264" CDS complement(2479092..2479586) /locus_tag="Dhaf_2295" /inference="protein motif:PFAM:PF02915" /note="PFAM: Rubrerythrin; KEGG: aoe:Clos_0617 rubrerythrin" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_002458762.1" /db_xref="GI:219668327" /db_xref="InterPro:IPR003251" /db_xref="InterPro:IPR009040" /db_xref="GeneID:7259264" /translation="MSEQKTLQHLMDAFAGESQANRKYLAYAKKAEKEGKLNAAKLFQ AAADAETLHAHRELELAGKVGSTVDNLKDGIAGETYEFESMYPDFIKVAEAEGNKAAV TTFTFAMKAEEVHAKLYKEALENLDSTEEVFYYLCPVCGNIEKYIPEKCSICNVPGDK FIKY" gene 2480082..2480930 /locus_tag="Dhaf_2296" /db_xref="GeneID:7259265" CDS 2480082..2480930 /locus_tag="Dhaf_2296" /inference="protein motif:PFAM:PF00497" /note="PFAM: extracellular solute-binding protein family 3; KEGG: drm:Dred_2235 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_002458763.1" /db_xref="GI:219668328" /db_xref="InterPro:IPR001638" /db_xref="GeneID:7259265" /translation="MKRKLSIVMAGLLSVMLLATGCGSSGQGNTQTPDAGNEINTFKV GLEAGYAPFNWTQMNDSNGGVKIDGGAEYAGGYDVEIAKKIAAGLGKELVIVKTEWDG LVPALTSGKIDAIIAGMSPTEERKATIDFSDIYYQSDLVIVVKSGSKYENSTSLKDFN GAKITAQLNTFHYGVIDQIPGVAKQTAMDNFPAMRVALQSGMIDGYVSERPEGVSAQA ANSDFKMVELTDGFKTSPEDTAIAVGVKKGSELTAKINEILKGIPEAERIQIMDNAIK NQPAAN" sig_peptide 2480082..2480174 /locus_tag="Dhaf_2296" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.361 at residue 31" gene 2481070..2481828 /locus_tag="Dhaf_2297" /db_xref="GeneID:7259266" CDS 2481070..2481828 /locus_tag="Dhaf_2297" /inference="protein motif:TFAM:TIGR01726" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_2234 polar amino acid ABC transporter, inner membrane subunit" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_002458764.1" /db_xref="GI:219668329" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:7259266" /translation="MSLDWIIRILTENWPMFLRGAGFTLLISIIGTIIGSLIGLIIGV IRTIPMPERGIKRILLKVVNALLASYIEFFRGTPMIVQAMVIYYGSALAFDIHMNHIF AGIFIVSINTGAYMAEIVRGGIISIDKGQFEAAHAIGMNHIQTMFNVVLPQVIRNILP ATGNEFVINIKDTSVLNVISVTELYFQTKSIAGNNFRYFEAFFVACILYFIMTFTVTR ILRYIERRMDGPESYTMNQMQVQTAESMLRRTKT" gene 2481863..2482606 /locus_tag="Dhaf_2298" /db_xref="GeneID:7259267" CDS 2481863..2482606 /locus_tag="Dhaf_2298" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_2233 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458765.1" /db_xref="GI:219668330" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259267" /translation="MAKVIEVQHLSKSFGPNEVLKDIDFSVRKGEVVCIIGSSGSGKS TLLRCINLLEKPSGGQIIYKGENILDDQHDVYQYRQKLGMVFQQFNLFNNHNVLNNCM VGQIKLLKRSKAEAEEVAMKYLKVVGMEQYINAKPKQLSGGQKQRVAIARALSMEPDV MLFDEPTSALDPEMVGEVLKVMKELAESGLTMLVVTHEMGFAKEVSDRVVFMDKGVIA EEGPPEEIFNNPTQERTREFLKRTLTPQV" gene complement(2482666..2484501) /locus_tag="Dhaf_2299" /db_xref="GeneID:7259268" CDS complement(2482666..2484501) /locus_tag="Dhaf_2299" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: hau:Haur_0337 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458766.1" /db_xref="GI:219668331" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259268" /translation="MRYGRPQVRSTRSPLTEEEKQNKPKVTKAFLRRILSYLLPYWPR LALVFAAIILSSLLGLLPPLLSGRIIDDGLLGRDFPLLVQLILLSFIVLIIANLINVL ENYLTTWVAQHIIYDMKNQMYDHLQQMSHRFFTNNHQGDIITRMTTDINGVQSVVVGT LTRLVSNTIILVTTFAALVQKNWLLALISMIIVPLFILPTNQVGNRRWSLTMAKQEQT DASNQLFNETLSVSGQLLVKLFTRESKEYAKFEKINREITRLSIREILVGRWFRVIFD TFTNMGPMIIYLAGGFLMIKMGSGLTVGDITVVVALLGRLYLPVNVLLTIQVDIIRSL ALFSRIFEYFDIPVEIKNSPQAIVPKECAGTIVFEHVSFHYEGKPVLKNINLTIEKGK SVAIVGPSGTGKTTLINLIPRLYDVTGGRVLLDGQDVRDLDLNFLRQNIGMVAQDTYL FNGTIRENLHYANEHAQEEDLIRVCREANIYDFIRTLPDGFDTLVGNRGLKLSGGEKQ RLAIARVLLKDPKVLIMDEATSSLDSLSESLIQEAIEPILKGRTSVIIAHRLSTIMAV NDIIVLQEGEIVQQGTHWELLKEDGLYKLLYETQFKIALEDLEHR" gene 2484851..2485411 /locus_tag="Dhaf_2300" /db_xref="GeneID:7259269" CDS 2484851..2485411 /locus_tag="Dhaf_2300" /inference="protein motif:PFAM:PF02659" /note="PFAM: protein of unknown function DUF204; KEGG: cth:Cthe_1420 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF204" /protein_id="YP_002458767.1" /db_xref="GI:219668332" /db_xref="InterPro:IPR003810" /db_xref="GeneID:7259269" /translation="MGNLELFLIAVGLSMDAFAVAISKGLSMRRMSYKTALITGLFFG GFQALMPLIGFLLGTRFESYITAIDHWIAFILLSLIGLNMIKESRGPCEIIEDRFNLK DMIILSLATSIDALAVGITFAFLHVDIVPAVSMIGVTTFLFSFLGVKIGNVFGECYKA RAELAGGVILILMGLKILLEHLGFLG" gene 2485502..2486179 /locus_tag="Dhaf_2301" /db_xref="GeneID:7259270" CDS 2485502..2486179 /locus_tag="Dhaf_2301" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: swo:Swol_2177 response regulator receiver protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002458768.1" /db_xref="GI:219668333" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259270" /translation="MRLLLAEDELELANALTAILKHNNYSVDAVDNGADALDWALAGN YDGILLDIMMPKMNGLEVLAKLREKGISTPILMLTAKGEIEDRIEGLDHGADDYLTKP FAMGELLARIRAITRRKTEFAPNLLTVGNLQLDRANYELSGEKGSIRLGNKEYQMMEM MMSSPNRLISTEQFMERIWGYDAEAEINVVWVYISYLRKKLTALGSTVTIKASRGLGY TLEDSHG" gene 2486172..2487398 /locus_tag="Dhaf_2302" /db_xref="GeneID:7259271" CDS 2486172..2487398 /locus_tag="Dhaf_2302" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ssa:SSA_1793 histidine kinase (sensor protein), putative" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002458769.1" /db_xref="GI:219668334" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259271" /translation="MVKNLQKRFIAIAMLSLLVVMVVVLGSLNLVNVGHVTQNADNLL ATLAENEGRFPPLGHGEPPRREPRSGFRMTVETPFETRYFLIRTNKDQSITEIDTSHI AGVSSTEAMDYAQKLLKEGRVNGYLGQYRYLIAEKDYGNLLILMDCSRQINTSKDFLW NSIGIALISLLILFILVSALSRRAIRPVIENMERQKQFITDAGHEIKTPLAIIAANSE VLELTNGKNEWTQSIQHQVKRLDELVKNLLTLAKMDEGKVELIFENLSFSDLVEETAG SFTALGEKKGLEFVLDIQPGLLIKGEESSLRYLVTILVDNGVKYAAEHGQLKVSLKKR GKTTCLEVYNTCDPLPEGDLNRLFDRFARGETSRSRESGGYGIGLSVAQAIVTAHQGR ITVERREQGISFMVVI" sig_peptide 2486172..2486252 /locus_tag="Dhaf_2302" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.860 at residue 27" gene 2487650..2488213 /locus_tag="Dhaf_2303" /db_xref="GeneID:7259272" CDS 2487650..2488213 /locus_tag="Dhaf_2303" /inference="protein motif:PFAM:PF03358" /note="PFAM: NADPH-dependent FMN reductase; KEGG: reu:Reut_A2018 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_002458770.1" /db_xref="GI:219668335" /db_xref="InterPro:IPR005025" /db_xref="GeneID:7259272" /translation="MSRIKVGVLVGSLRKDSFCRKLSKALKEVAPQSLELENVEIGEL ALYNEDLDEPGNLPEAWTVFREKMKSCDAFLFVSPEYNRSVPGVLKNALDVGSRPPSK SVWGGKPGAVLTASPGSIGGFGANHHLRQTLSCLNVPTMQAPEAYLGNIATVFDENGN LTNERTRGFLQKFMESYVIWVDKNKLT" gene 2488248..2488733 /locus_tag="Dhaf_2304" /db_xref="GeneID:7259273" CDS 2488248..2488733 /locus_tag="Dhaf_2304" /inference="protein motif:PFAM:PF02915" /note="PFAM: Rubrerythrin; KEGG: tte:TTE2227 hypothetical protein" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_002458771.1" /db_xref="GI:219668336" /db_xref="InterPro:IPR003251" /db_xref="GeneID:7259273" /translation="MNALEFAIKMELDGERYYREQAVINQANSLRAIFLMLADDEKMH AQILEKKTKNLNYTLEPNETLATAKNVFSDKDRIKNEIKEIPSQIDVYRAALDNEKES ILLYQKCSSEAADGETKALFDYLILQEKEHYAILEQLTALLSRSEEWVEDAEFGLRED Y" gene 2488964..2489692 /locus_tag="Dhaf_2305" /db_xref="GeneID:7259274" CDS 2488964..2489692 /locus_tag="Dhaf_2305" /inference="similar to AA sequence:KEGG:SGO_0092" /note="KEGG: sgo:SGO_0092 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458772.1" /db_xref="GI:219668337" /db_xref="GeneID:7259274" /translation="MSTYQSVFKRYEKKYMLNEEQYRHLLKRAAGKVKEDKFKQSRIN TIYFDTPDYHLISASLEKPLYKEKLRLRSYGTPHGHDQVFVELKKKFQGVVYKRRTVM SLEEAVEYLYHRKPARNASQITQEIDWFLKFYGEIGPAMYISYERLALSGIEDPGLRI TFDQDILWRQDELDLSMAPWGRSLLAPGQRLMEIKIAGAMPLWLAHILDELAIYPSSF SKYGKAYLTSSAGQILNKGGKIIA" gene 2489685..2490383 /locus_tag="Dhaf_2306" /db_xref="GeneID:7259275" CDS 2489685..2490383 /locus_tag="Dhaf_2306" /inference="similar to AA sequence:KEGG:SGO_0093" /note="KEGG: sgo:SGO_0093 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458773.1" /db_xref="GI:219668338" /db_xref="GeneID:7259275" /translation="MLDSIFQSILNIEAAGTAFPWQSFLLCTGVSLLLGIIIACFYMY RNAYSYSKSFVATLATLPAIVQLVIMLVNGNLGAGLAVMGAFSLVRFRSIPGSAKEIS SIFLAMAIGLATGMGFLGIAVMFTLILGLTNLLLDWVGFGEQKNAEKTLRITIPEGLD YSGVFDDLFERYLSKWDLVQVKTTNMGSLFKLDYRILLKDMNKERELINELRCRNGNL EILCGRVSVRKEEL" gene 2490383..2492317 /locus_tag="Dhaf_2307" /db_xref="GeneID:7259276" CDS 2490383..2492317 /locus_tag="Dhaf_2307" /inference="similar to AA sequence:KEGG:Mlab_0294" /note="KEGG: mla:Mlab_0294 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458774.1" /db_xref="GI:219668339" /db_xref="GeneID:7259276" /translation="MKKIRSKGYTLVSLFLVLTLGLTGCGKAGSQQEMSDASVAISSP VTSSAEFDLSFSARDLDVGFDEGTATQITLSDSGIEVVGSGAEAEGETVSITQEGTYV LSGSLPDGQIIVDAPDTDKIQLVLRGVSIHNEDHAALYIKEADKVFITLATDSQNTLS DGTEYVQRDEVNVDGAIYSKADLTINGGGSLNVIGNYKHGIVSKDDLVITGGKLSVTA QGQGLHGKDCVKIKDGIFALKTQGDAVQSDNTEDETRGFVYIAGGTFAIETQGDAFQA ETLLQADGGTFKIMTGGGSENASTDSQGNEQAGWGMWGGPPGNPENVNGAPPETATEA ATVEDTPSAKGFKAGKEMILNEGSFDIDSSDDALHSNGKLVITGGTYAVSSGDDGLHA DGDLTITGGILLVAKSYEGIEGNTITITGGIIEVTARDDGLNVAGGNDGSAFGRPGQN SFTQVSTDHYLRISGGEIKVDAAGDGLDSNGNLFVEGGTITVSGPINNGNAALDYDGT ATISGGVLMVTGSSGMAQGFSEESGQYSLLHNLSTSVAAGSEVTLTDVNDKVILKWTA NKEFTSVHLSSPDLVQGGTYTLTAGPLEETVTLSSVATSNGGGMGSGMDGMGGGGKGG NFGDMKGQPPQPGAKPDRPN" sig_peptide 2490383..2490475 /locus_tag="Dhaf_2307" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.529 at residue 31" gene complement(2492425..2493321) /locus_tag="Dhaf_2308" /db_xref="GeneID:7259277" CDS complement(2492425..2493321) /locus_tag="Dhaf_2308" /inference="protein motif:PFAM:PF04069" /note="PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ckl:CKL_0779 ProX" /codon_start=1 /transl_table=11 /product="Substrate-binding region of ABC-type glycine betaine transport system" /protein_id="YP_002458775.1" /db_xref="GI:219668340" /db_xref="InterPro:IPR007210" /db_xref="GeneID:7259277" /translation="MKIQKSWPKALFWALTALLAIGLTGCGAAPGSPSGNKKTNGSDK TVNIGYVNWAEAVAVSNLWKVILEEQGYKVKMTSLDAAPLFVGLSAGNLDIFMDSWLP TTHQIFWDKYKNKLDDYGVWYTAEAKIGLVVPEYAEISSIEELNAHKDRLSGRITGID PGAGIMKATETAIDSYNLDFNLIQSSEAAMLAALDKAYRNQEWIAVTGWSPHWKFAKY DLKYLEDPKGSYGQSEQIHTLANKEFTQAHPEVAAMLKKFELNDQQIGTLEGYINEGM KPEEAAQKWMAENRDLVDSWLK" sig_peptide complement(2492425..2492511) /locus_tag="Dhaf_2308" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.884 at residue 29" gene complement(2493351..2494190) /locus_tag="Dhaf_2309" /db_xref="GeneID:7259278" CDS complement(2493351..2494190) /locus_tag="Dhaf_2309" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_0733 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002458776.1" /db_xref="GI:219668341" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259278" /translation="MTKIPLGEWVNQGVDTLLFYFGSAFDAFTDSVTSMTDAMREGLD VVPWFILVLLFAALAWRAKGWRLALGTTVGLCLIYNLELWPAFLDTLILVLLASLVSL VIGIPLGILGARHNGFHRVLSPILDFMQTMPSFVYLIPALMFFSLGTVSAIFATVIFA MPPVIRLTALGIRQVPADLVEVGEAFGSNSRQMLWKIQLPLALPTIMAGINQTMMLSL SMVVISAMIGAQGLGAGVLAGISGMDIGKGFEYGLAVVILAMILDRLSQGALRNSRVA KKI" gene complement(2494190..2495404) /locus_tag="Dhaf_2310" /db_xref="GeneID:7259279" CDS complement(2494190..2495404) /locus_tag="Dhaf_2310" /inference="protein motif:TFAM:TIGR01186" /note="KEGG: drm:Dred_3209 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="glycine betaine/L-proline ABC transporter, ATPase subunit" /protein_id="YP_002458777.1" /db_xref="GI:219668342" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005892" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259279" /translation="MSVKIEVNNLIKVFNPQPQKALDLLAKGLSKEQILSETGLTVGV NNVSFTVNEGEIFVIMGLSGSGKSTILRCLNRLIEPSAGAILIDGVDITQLKPQELRQ TRQKKLGMVFQQFALLPHRTVLQNTVFGLEIQGADRAAREQKARDCLAMVGLAGWENS YPDELSGGMKQRVGLARALANDPDILLMDEAFSALDPLIREEMQDELLNLQQKMNKTI VFITHDLNEALKIGDQIAFVRDGSLVQVGTAEEIVGSPADDYVAKFARGVDLSRILTL KDIMKRPQPVVQLKDGPNVALKVMKEHGLSSVFVVDRSKRLHGLINADLAIEARQKGV HSLQEVELIEVLALQGNVLVQDILPVIANTKVPLAVVDEEEHLIGIIVRGVVLAALAE AGSSAGKTGGET" gene 2495772..2496968 /locus_tag="Dhaf_2311" /db_xref="GeneID:7259280" CDS 2495772..2496968 /locus_tag="Dhaf_2311" /inference="protein motif:PFAM:PF00155" /note="catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase" /protein_id="YP_002458778.1" /db_xref="GI:219668343" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7259280" /translation="MISRTMQQQVNSSSIIRAMFEEGKRLSALYGADNVYDFSLGNPN VEPPAEVKQAIMDILNEENSTTVHGYMNNSGFEDVRGAIAASLNQRFATGFAADNILM TVGAAGGLNVIFKTLLNPEDEVLTFAPFFGEYRNYVQNYQGQLIVVSPNTKDFQPNLE ELKEKISPRTKAVLINSPNNPTGVVYSAETIAALVDILRAKQEEYGTVIYLIGDEPYR ELAYDQVEVPYLTKYYENTIVGYSYSKSLSLPGERIGYLVIPREAADYENLIAAANIA NRILGFVNAPSLFQRVIAKCLDAQVNLDSYNRNRELLYNALVSYGYQCIKPEGAFYLF IKTPLENDLEFCTLAKSKNILIVPGTSFACPGYARIAYCVAYETIERALPGFEALINE VSWASA" gene 2497154..2499463 /locus_tag="Dhaf_2312" /db_xref="GeneID:7259281" CDS 2497154..2499463 /locus_tag="Dhaf_2312" /inference="protein motif:PFAM:PF04122" /note="PFAM: putative cell wall binding repeat 2-containing protein; KEGG: ckl:CKL_0407 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative cell wall binding repeat 2-containing protein" /protein_id="YP_002458779.1" /db_xref="GI:219668344" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7259281" /translation="MMNDCQLRPMSLKTCVTMLFLAVAIALLAPSVTLASAGPTIQYF GGSDWEVFNGVDNTHDGGYVVVGHSSSNNGDMAGLNKRYSDAVIVKFSANAEVQWVKT FGGRSVDSFQSVKQTKDGGYIAVGSSSSTDMDMKNSRKKVREEGQDTSNNDAIIVKFN SLGEVEWFRDFGGSLGDSFNGVVETPEGDFIVVGESESKDGDLSGLAQGNSDAIYARY QRDGKFMGAYSYGGSLSDGFNDLVLLADGSAVAVGYSGSNDKDMKDTGPCLLKGIVVK IHKNMSISWATSVDLTDPSYQRLVHSAGNGLQDIKVTHDQGFIVVGKGIYLERKADGS SNMNEDGRIYKFDALGREEWHDTYTNQAYTRFFGVAQDQAGAYTVVGDSYMPGAKKII ALRYDSHGVRLWDKEDEGSRNRYLLSLVPKGDQFVAVGSKYIQGKSEEGLLYIGRFEE EGSKLVMAPNTGSHPAETTTQLEVGETERLAGNDRYETAIAISKKGWEKAEHLVLVNG NNFPDALVGSSFAYLQNAPILITPADRLDDRVSAEIKRLGAKTITILGNSASVSPTIE NQLKERYKVTRISGAEVLDTAVKIGEEIRKVKPFDTVIIATQSNFPDALAIAPYSAKE TIPILFTEKDRLRPDTKKALAGWGIKNAIIIGGTGVVSLDVDLELDALGLTVTRLGGE DRYDTALEIARHFGAGSPYSAIAVATGENYPDALTGAVLSAKNNTPLILVTGDRAKST VLDYLNPLSLKKATIFGGAGVVADEIFKH" sig_peptide 2497154..2497261 /locus_tag="Dhaf_2312" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.637 at residue 36" gene 2499717..2502662 /locus_tag="Dhaf_2313" /db_xref="GeneID:7259282" CDS 2499717..2502662 /locus_tag="Dhaf_2313" /inference="protein motif:TFAM:TIGR00254" /note="KEGG: cno:NT01CX_2347 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)" /protein_id="YP_002458780.1" /db_xref="GI:219668345" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7259282" /translation="MFHSLLRGRGWLKAIFLMLFLLGVSIIPKFGYASQEPVHILILN SYHQGLEWTHDQTDGILQKLQSHGEQQIYVEYLDWKRYPTLDNLNNQFDYLQAKYTGQ QLDLIITTDDMALKFALAHRGEIFANAPIVFSGILENSAQELLQGQERVTGVYEILDS EGTIRLALAINPQVKHIYVLNDLSESGLACGDDVFAAVRKINGEEARGLVAHSLAYST INEILHKVSALDNDSIVLLGSYNMDSTGLILSTEDVASEVSRSSSVPIYSLYEFLLDS GVTGGSLLSGRVQGEHAADQALKILAGQNVDTVPIIREHTFVAGFNYNELMRFNIPEK LIPQDSMVINKPFSFVDTYRSLVYITTGVLLLLILLVTGLLFNIRRRIKVETNLRIKN EEISAMHEELTATEEELRQQFDELLSNQRQLKETQELQELVLEAAIDAIWDWDMIRDI RVYHSKNSSLLGYKGDEIRSVEHWNALMHPDDKAEFQKKLNQHLFEKTARYSCDYRIK DKDGEYKWIRAFGKALYDQSGNPYRMVGSHRDITDIKEKEMHIKYLAYHDFLTGLPNR AQIQEIIKSEILKAEEQGTLLGVLFLDIDNFKAINDSFGHPTGDQLLITISRHLTQIL DNHVVARLAGDEFLILIRDIQEKEQAIDYAERIMKLFETALVIYKQYCYISTSIGITF YPQDGESYESLLINADTAMHKAKELGKRNYVVFNMEMKRAVVEKAEIQNNLRKAIEFE EFVLHYQPQVEPHTGKVLGLEALIRWEKEHKLIPPNKFIGVAEETGLIVPIGDWVVAT ACAFLKKLHDLGYRELTMSVNISARQLQEDRFVEKVLKVLRDNDLDPSKLELEITETM LIEFLDAKISNVLARLIENDIKISLDDFGLGYSSLNYIKQLPISTLKVDKSFIDDIQS TPESKNITGLIVIMAHQLGLKVVAEGVEKPEQREYLIKYDCDAIQGYLASKPLPEEEL IKVLNKNLL" sig_peptide 2499717..2499818 /locus_tag="Dhaf_2313" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.735) with cleavage site probability 0.727 at residue 34" gene 2502853..2503791 /locus_tag="Dhaf_2314" /db_xref="GeneID:7259283" CDS 2502853..2503791 /locus_tag="Dhaf_2314" /inference="protein motif:TFAM:TIGR00762" /note="TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: aoe:Clos_2758 DegV family protein" /codon_start=1 /transl_table=11 /product="degV family protein" /protein_id="YP_002458781.1" /db_xref="GI:219668346" /db_xref="InterPro:IPR003797" /db_xref="GeneID:7259283" /translation="MIKILADSTCDLSQEVLEKYKIDIAPLTICIKDKDYRDRIDITP DEFYGFIEDLDAPPTTSMPSPAEYLKIFKRAIQEGHSSILCICMSSGTSGSYQSAVIA RDYFFEEHPEMTDRVHVVDSKSMSHGSGWLILKSARMRENGAAFAELVEFNEAHKTSV KHYLSVDDLDHLIRSGRLTNASAFVGKLLKLKPIMTMKKGKGAIVAKERGRKKVLEHY VSEFSRRVNDELTDFIIIGYTSDITYAENLKHKIERDTAYKGDIFIMQMGVAVGTHVG LGALSMFFLEKGRMKDNLLINEVHGLAALKNQLLRN" gene 2503919..2504281 /locus_tag="Dhaf_2315" /db_xref="GeneID:7259284" CDS 2503919..2504281 /locus_tag="Dhaf_2315" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: tpt:Tpet_0282 DNA polymerase beta subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002458782.1" /db_xref="GI:219668347" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7259284" /translation="MVMPVDISHYVLGHRERVKNEDQKREKFLAEAIYKAKQIAGELP RVFPGVEVYLFGSLTTEFYELTSDIDLAIKGLREEDYFKALKIAEEIGAPISVDLVQV EYAQETLQKNIEREGVKL" gene 2504442..2504549 /locus_tag="Dhaf_2316" /db_xref="GeneID:7259285" CDS 2504442..2504549 /locus_tag="Dhaf_2316" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458783.1" /db_xref="GI:219668348" /db_xref="GeneID:7259285" /translation="MLVLLENKFKTPVLLNGEIRLAPQVFLFIRKGCIM" gene 2504607..2505524 /locus_tag="Dhaf_2317" /db_xref="GeneID:7259286" CDS 2504607..2505524 /locus_tag="Dhaf_2317" /inference="protein motif:TFAM:TIGR00688" /note="TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: bcy:Bcer98_2234 transporter DMT superfamily protein" /codon_start=1 /transl_table=11 /product="RarD protein, DMT superfamily transporter" /protein_id="YP_002458784.1" /db_xref="GI:219668349" /db_xref="InterPro:IPR000620" /db_xref="InterPro:IPR004626" /db_xref="InterPro:IPR013657" /db_xref="GeneID:7259286" /translation="MEEKSSKTGVLSALAAYTAWGLLPIYWKTLQSVPAQEILAHRIT WSFVFVALLVLYKKQWGKIRSVLRDRSKVLGLLLSALLVTSNWYIYIWAVNSNRVVEA SLGYYFNPLIVVLMGIMVLGERIDRWQIASIVLACLGVLILALEYGKIPWISLGLATT FALYGLAKRLVAVDSLLGLTLETAVVTPIAIIYLWTAGANSGGTISHFGVPTLLLLMG AGIVTAIPLLWFAHAAKNVPFTTIGFIQYLSPTLSLVLGVFVYHEEFTSTHALSFGFI WLALAVYSVSRIVVFRKANLGVAHSLQGK" gene complement(2505575..2506648) /locus_tag="Dhaf_2318" /db_xref="GeneID:7259287" CDS complement(2505575..2506648) /locus_tag="Dhaf_2318" /inference="similar to AA sequence:KEGG:Moth_0833" /note="KEGG: mta:Moth_0833 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458785.1" /db_xref="GI:219668350" /db_xref="GeneID:7259287" /translation="MFDSSSWQPRFLATGVGSLPYAQAETALSQIWKALPQAPHWPQL PQLGAESSFVGQYLKVLIETGCIGGFEQPRFQVDAPDWTERMAHFYEYYLHAEAGDPN ALAEFGFTPEGGLGFNEFCDVLDQQGTQEALLLKGQLSGPVTLGMQITDPNRKAAYYD DFQRDILVKSLRCHARWQTKRLAQYGLPVLMSIDDPGLYAYGASTHLTLDRTVLIENI NEVAEGILAEGGIPGAHVCAGMDWTLLFDSKIRVVNFDAYEYMTSMAVLAEPLERFLQ KGGILSWGIVPTSAKAWGESAASLRERLETNIKELTKRGVSEDRLRSQSMLTPSCGTG TLDIELAERIYALLQELSTSYRD" sig_peptide complement(2505575..2505649) /locus_tag="Dhaf_2318" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.757) with cleavage site probability 0.736 at residue 25" gene 2506835..2507965 /locus_tag="Dhaf_2319" /db_xref="GeneID:7259288" CDS 2506835..2507965 /locus_tag="Dhaf_2319" /inference="protein motif:PFAM:PF01541" /note="PFAM: Excinuclease ABC C subunit domain protein; KEGG: cbe:Cbei_4522 excinuclease ABC, C subunit domain protein" /codon_start=1 /transl_table=11 /product="Excinuclease ABC C subunit domain protein" /protein_id="YP_002458786.1" /db_xref="GI:219668351" /db_xref="InterPro:IPR000305" /db_xref="InterPro:IPR001943" /db_xref="GeneID:7259288" /translation="MEDKNCLKEKLKDLPEQPGVYLMQDSLGNIIYVGKAKNLKNRVS QYFYKQKDRDPKVEEMILRIADWEYRIVDTELDALLEECRLIKEIKPHYNRQMKNHQK YVYIKIPDESFPRLDIVQEREAGGGIYYGPFSSRHRVETAVEGLSDIFLIRKCSAPGR SKGGNGCLYRQLGTCVGVCTGKVSSEEYRERLDGVCQAIEAGDKGAMKELSSRMARAV EGLNFEMAARYREYLLGLRYIQGRQKFLKGTYRNKSLLALEQLDTEKKTVKVFLIKGN RVVTSRVLTWLDEDLKQFLREITQALADQPGCSRQLTQQEVDEAQILDSYLRKDRVIS IPITQKALKQGAFVEDMLKRINLKRINEEEKKKGDNYGQEIL" gene 2507946..2508410 /locus_tag="Dhaf_2320" /db_xref="GeneID:7259289" CDS 2507946..2508410 /locus_tag="Dhaf_2320" /inference="similar to AA sequence:KEGG:RoseRS_3668" /note="KEGG: rrs:RoseRS_3668 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458787.1" /db_xref="GI:219668352" /db_xref="GeneID:7259289" /translation="MARKSFNEKLKQNKDLPKVVQVTDPKSVMRYGGDKMLVAPPLAY DEQMRRVPEGKVITADYLRSYLAQKHEADFTCPLTAGIFINIAAHASAERGEDPTPYW RTLKKDGRLNEKYPEGIQGHKTFLEREGHTVIQKGNTYYVKDYQDKEFDLNS" gene 2508478..2508777 /locus_tag="Dhaf_2321" /db_xref="GeneID:7259290" CDS 2508478..2508777 /locus_tag="Dhaf_2321" /inference="protein motif:PFAM:PF08922" /note="PFAM: Domain of unknown function DUF1905; KEGG: cpy:Cphy_1648 hypothetical protein" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1905" /protein_id="YP_002458788.1" /db_xref="GI:219668353" /db_xref="InterPro:IPR015018" /db_xref="GeneID:7259290" /translation="MSKFYEFDAEIKKVPDMDGAYIEIPFDVKAEFGKGRVPVTATFD GEVYAGSLVRMGTPCHILGIRKDIRTKIGKQPGDTIRVTLREREPKGKTKGLGSV" gene complement(2508763..2509458) /locus_tag="Dhaf_2322" /db_xref="GeneID:7259291" CDS complement(2508763..2509458) /locus_tag="Dhaf_2322" /inference="protein motif:PFAM:PF08922" /note="PFAM: Domain of unknown function DUF1905; KEGG: cpy:Cphy_3182 hypothetical protein" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1905" /protein_id="YP_002458789.1" /db_xref="GI:219668354" /db_xref="InterPro:IPR015018" /db_xref="GeneID:7259291" /translation="MKRNDVMHYLFRSGCYKEGNRVFIKIPFNVWDTCGKKGNIPVKA TIDDIAFECKLIPKGNGDYLLPLNKDIFSKLGSSGEYDVRFTLLEQLTRITNDSPYDK DNPIRQIESISYLKQPHNGYCGQTCLAMLAGISVDEVIKIMKSTKWQASISKVLETLD YFGFSYKKPVYTHGEKVMFPKCCIINSRGCEKSHLLVYFDGVFYDPATGVSKDYPHKT IISYIEVSTLNRT" gene complement(2509458..2510327) /locus_tag="Dhaf_2323" /db_xref="GeneID:7259292" CDS complement(2509458..2510327) /locus_tag="Dhaf_2323" /inference="protein motif:PFAM:PF06445" /note="PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: aoe:Clos_2745 AraC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002458790.1" /db_xref="GI:219668355" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7259292" /translation="MDWVKQLNEAIHYIEENLTTEISYETISKIAGCSVYNFQRMFSY IADKPLSEYIRSRRLTMAAFDLLNSTDRIIDIALKYGYESPDSFSRAFKSFHGVLPSS VRNETVQLKSCPKLSFQITIKGAYHMNYQIEHWPAFKVMGISHKVKTAAAFEVIPGLW EKAWQDGTMGRFMENFPDYRPAGFLGIAAGGQWGDSEGMNYIIAVTNHVDVSECQPIP VLEGMEEFAFPAAAWAIFEANGELPDATQKVYKQFYTEWLPNSGYALADLPVIECYMQ ENRQEVWIALVKK" gene 2510503..2512119 /locus_tag="Dhaf_2324" /db_xref="GeneID:7259293" CDS 2510503..2512119 /locus_tag="Dhaf_2324" /inference="protein motif:PFAM:PF01520" /note="PFAM: cell wall hydrolase/autolysin; putative cell wall binding repeat 2-containing protein; KEGG: ctc:CTC02092 N-acetylmuramoyl-L-alanine amidase" /codon_start=1 /transl_table=11 /product="cell wall hydrolase/autolysin" /protein_id="YP_002458791.1" /db_xref="GI:219668356" /db_xref="InterPro:IPR002508" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7259293" /translation="MQWKRISFLSLTVILLLNLFPFTVFGAEATAESSATGAATIRLY GKDRTATSIAASQQGWTTSETVILNELNNYADAIAATPLAVGLDAPVLLTYGAHLDPR VKEELKRLEAKKVILLGGNGRLSTYLEKELTELNYQWERIGGQDRYETSTLIAAKVPS DTMILVNGDDFPDALSAASYAGSQQIPILLMSNPEFPQSVSDYYQQHRPSQVIVVGGD GVVPDQLLEEQNIPVSQRLGGQDRYESAAKLYEYAQTQNVYDAKQLYLASGQHYPDAM VGTVLAAKNNSALLITKSYTLPESIAPIFSPDKLAAMEVFILGGTGVVSGKIQAELEG KDFIKNLLIGKTVVVDPGHGSPDPGAIGPGGSKEKDNNLAIARYLAVELEAAGAKVVL TRNDDNSPAYAPGTPYTQRGDLQKRVDIANENNADLFISIHNDSWQTAQGTTTFYSSE NPSGSPSYKLAQYIQSGLTQEIGTKNLGVKDSRLYVLRNNTMPAVLVEVAFISHPTEE KQLSDNAFREKAAQGISQGVQAYIRYLERV" sig_peptide 2510503..2510583 /locus_tag="Dhaf_2324" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 27" gene 2512465..2512683 /locus_tag="Dhaf_2325" /db_xref="GeneID:7259294" CDS 2512465..2512683 /locus_tag="Dhaf_2325" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458792.1" /db_xref="GI:219668357" /db_xref="GeneID:7259294" /translation="MKEGMELRVISDEVDGVLILKVVEGKNKDFSGIKGVGKELWKDV DAQEYVTQDRDKGSEWSGLAVEPLYTGV" gene complement(2512702..2513172) /locus_tag="Dhaf_2326" /db_xref="GeneID:7259295" CDS complement(2512702..2513172) /locus_tag="Dhaf_2326" /inference="protein motif:PFAM:PF01243" /note="PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cpy:Cphy_1296 pyridoxamine 5'-phosphate oxidase-related FMN-binding" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-related FMN-binding" /protein_id="YP_002458793.1" /db_xref="GI:219668358" /db_xref="InterPro:IPR006194" /db_xref="InterPro:IPR010916" /db_xref="InterPro:IPR011576" /db_xref="GeneID:7259295" /translation="MQNRMKHFQLTKEEIDALLERAAIGRFGTVRGDGYPYVTAMHFV YYNETIYMHGLPKGLKIDNVKANPKVCFEVDELLGLQPGEGAACDTEAIYNSVVVIGT AHILEDISSKREVLNRLVEKYTPQFAGKELPENMVKGTAVIELQIKECTGKYHK" gene 2513348..2514772 /locus_tag="Dhaf_2327" /db_xref="GeneID:7259296" CDS 2513348..2514772 /locus_tag="Dhaf_2327" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cpy:Cphy_1297 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family with aminotransferase domain" /protein_id="YP_002458794.1" /db_xref="GI:219668359" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7259296" /translation="MIYISKEINTPLYDQIYRQIQGDIISGNLSPGTLLPGIRTLAKT LGVARNTVDKAYTQLAVEGYIIPRKGAGFAVESIRDSKKSAELQPLSSGVSAHPGHEK AEKKLPYDFQYGSFPEEYFPKTAWKKHMLEVLALPHLSAQMTQYQDKQGNLSLRCELQ NYLYQTRGVVCTEDQILIGCGLHYSLDTLCKLFAGHKRIAMEEPGYNGAKEVFQNNGF TIRHIPSTPYGLDLSQLKTLAVPIVYVTPSHQFPYGTVLPISKRRELLEWAAEENAYI IEDDYDSEYRYDANPIPSLQSIDGHDRVIYIGTFSKSLSPSLRINYMVLPKSLLPAYH QMFSTYSSPVTWLTQEVLASFLRSGDYTRHVRRMCAAYRKRHDVFVQQLSQHFGPNIV LHGQGAGLHFLVEFAEEVEAEGLIQMAEEAGVRVYPVTPFWSASEACPPNLLFAGYSL LNERQIQEGLRLLKEVWAPVLEIK" gene 2514920..2515864 /locus_tag="Dhaf_2328" /db_xref="GeneID:7259297" CDS 2514920..2515864 /locus_tag="Dhaf_2328" /inference="protein motif:PFAM:PF08902" /note="PFAM: Domain of unknown function DUF1848; KEGG: amu:Amuc_1315 domain of unknown function DUF1848" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1848" /protein_id="YP_002458795.1" /db_xref="GI:219668360" /db_xref="InterPro:IPR014998" /db_xref="GeneID:7259297" /translation="MILNISGRTDIVNHYADWLFRRFEEGYVLSRNSLFANSVRRYEL TPDKVDCLIFGSKNYAPVLQRIHEITERFHTYFYYTITAYGRDVEPGVPDIDTSIATL IKLSEIVGARRVAWRYDPVLLTSNYTGALHLETFEYIADRLAGHIDRCIFSFVEMYRK HEVNFPELIALQDEDKDNIARGLGAIAAKYGIPLQTCGPEENYAQYGIETSGCVTLDI LGRANDIQFRELKHRGFREGCHCMESRDIGALNSCPNGCKYCYANKNAQLPRENYLLH DPESPLLIGRLKPSDNLQQGMQKSFLKQGHQAQVGKTV" gene complement(2516141..2516458) /locus_tag="Dhaf_2329" /db_xref="GeneID:7259298" CDS complement(2516141..2516458) /locus_tag="Dhaf_2329" /inference="protein motif:PFAM:PF05016" /note="PFAM: plasmid stabilization system; KEGG: dau:Daud_0750 plasmid stabilization system" /codon_start=1 /transl_table=11 /product="plasmid stabilization system" /protein_id="YP_002458796.1" /db_xref="GI:219668361" /db_xref="InterPro:IPR007712" /db_xref="GeneID:7259298" /translation="MDKGPQYKVIVSERARQMLAGHVRFLAQKSPDAARRTKNELMNA IRSLSTMPERFPFLNAEFIPLNKYHKIFVEKWCLILYQIKDQTVYVDYIVDCRQDYGW LIR" gene complement(2516451..2516726) /locus_tag="Dhaf_2330" /db_xref="GeneID:7259299" CDS complement(2516451..2516726) /locus_tag="Dhaf_2330" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: amt:Amet_0595 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002458797.1" /db_xref="GI:219668362" /db_xref="InterPro:IPR003756" /db_xref="InterPro:IPR006442" /db_xref="GeneID:7259299" /translation="MQIKPSASIRQNYNEIAALCKESGEPVYLTKNGEGDLVVMDIEA FTRREKMLKLREELLAVEEDRLAGRIGVTPDELDSYLDSIIDEVDHG" gene complement(2516853..2518073) /locus_tag="Dhaf_2331" /db_xref="GeneID:7259300" CDS complement(2516853..2518073) /locus_tag="Dhaf_2331" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002458798.1" /db_xref="GI:219668363" /db_xref="GeneID:7259300" /translation="MDFKVPDYMQELALASGQGLDQLSAVLARILDHPVLISSSAYKL FSSSSHYDFESFHIYSNQPRTGSDALFTCHILTDTMQSLALGRVVAPFGRTLGYIFML TDDDSPDPTHFKPLLDYAASLCAVHLQNRLELKQEQSKFKNAFLYDLIYGNLKRNDEI IATGELWGWNFRRPHTIMVFLLPEPDFYTTEWHLMDVLSRIVEQNFIEIYYKNPAVIL RQNELILFVPMQTDKPAVQTEELLVFADKILSQVQNTELKGLAACGVGQAYSEATVLF RSYQEAKVALEMGKLLGIPIPFFRDLGLERILYKHDLQDLKEYYLHVLGELHKQDDQD SSLVTILESFAENQFDVGKTAKALFMHPNTLRYRLNKIENILGKPLTDNHARLDIMAA FKIKRLHTIETLLA" gene 2518284..2518400 /locus_tag="Dhaf_2332" /db_xref="GeneID:7259301" CDS 2518284..2518400 /locus_tag="Dhaf_2332" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458799.1" /db_xref="GI:219668364" /db_xref="GeneID:7259301" /translation="MMAHSKECLDAGCQDLPLTVMVRFNRLKGGRIYVKIAG" gene 2518381..2521023 /locus_tag="Dhaf_2333" /db_xref="GeneID:7259302" CDS 2518381..2521023 /locus_tag="Dhaf_2333" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ccv:CCV52592_2107 anaerobic dimethyl sulfoxide reductase subunit A" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458800.1" /db_xref="GI:219668365" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7259302" /translation="MSRLLDKINDQKISRRNFLKATAAGTASLALAGCRSGLTSAGEK VNALGEEQGEWIPAACWHNCGGRCLNKALVVDGVVVRQKTDDTHEDSPDYPQQRGCLR GRSQRQQVFGADRLKYPMKRKHWQPGGGDKSLRGKDEWERISWDEALTYIADELQRVK KDYGNRSILHIGGWSSRITDISRTLGLFGGYCEYWNTNSFGSWAMTPKTVGFLQLGVW DQTVNDRFDLRNCETIIMLSMNPAWSAMGSSSWHYLQAKKAGAKFIGIDPFYNESYSM LGAEWVPVRPSTDSALLLAIAYVLITKDHPAMNPLIDWEFLNKYCLGFDAEHMPEGED PQGNFKDYVLGTYDGVPKTPAWASEICGVDKIQIEKLAMEFRKDKKVAFLCGMASART TNSDNLPQLIMTIGAMTGHMGKSGHMTGSTMHATSGNGGPALVCAGSNGLPGIANPVD DSINAGQVWDAILNGKYNFTGSGDFVSPDQFKPGQERDIDIHIIYHSGGATLQTSDGM TKGIEAHRKVDLVVSHSQFVTTNSKYADIVLPVTTEWEKFGGFSGGTLVHSGNREMLI MYSQITEPLYEARSDQWIAIELAKKLGIDEKEAFPFDEKQQFFNALASATVVNEDGKT YGPLVTITQKDIDEMGVAGKPQTGKITYRELKEKGVYQVKRSPGDNYGYIAYEDFVKD PGKNPLTSESGKLEIYSRQLAKTVNDMGFSRIHPIPSYIPPVNGYEDTFQDWESKAKG EYPYQVINPHYLRRSHTVFDNVKWLQEAWSNPVFLNTKDAQAKGISNGDTVLITSPYG QILRNACLTERVRPGVVALPHGAWVDIDEQTGIDRGGADNILSGQVPTGQGVSGFNTG VARIEKYTPSKLILDVEKPARIVF" sig_peptide 2518381..2518506 /locus_tag="Dhaf_2333" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.896 at residue 42" gene 2521043..2521621 /locus_tag="Dhaf_2334" /db_xref="GeneID:7259303" CDS 2521043..2521621 /locus_tag="Dhaf_2334" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458801.1" /db_xref="GI:219668366" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259303" /translation="MGKLGFYFDMEACVGCRTCQIACKDKNNNKIGVLYRRVRNFETG VYPRPDGFNYSSACNHCAEAKCVKGCPTGAMHYAEDGTVQHDKNKCIGCKYCIWNCPY GAPQFLEESGIVGKCDSCKELRHQGGNPACVDACIMRCLEFGDLDELKAKHGADLVQE LSILPDAKVTNPSVLIKPRSCAMDANPKEKEV" gene 2521625..2522503 /locus_tag="Dhaf_2335" /db_xref="GeneID:7259304" CDS 2521625..2522503 /locus_tag="Dhaf_2335" /inference="similar to AA sequence:KEGG:SPAB_00410" /note="KEGG: spq:SPAB_00410 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458802.1" /db_xref="GI:219668367" /db_xref="GeneID:7259304" /translation="MENLSLILFSICLQGAIGTMAFVALGKSFNKEGQFKPAMVTAAG LAIVGLLASLLHLGRPLAALNSLAHFGTSWLSREIWFTAVFTGLTVLCALLVLIKPAA KGAVNALAPLAAVIGLIDVYIMSSIYNYASVPAWQHGSIFVEFYAAAISLGAVIFLAL SGKEADKVKKAASLAVGIAVVVQVAAMVAYYIQLGTSENLAAGQSLALLNSMSGVMAT KWLFILLGAGLLMFPMGKGSMKISVGQAAAQMAAPTEGTAGTTVYLAAALVVIGQILG RYIFYAVMIVNTVGLS" sig_peptide 2521625..2521705 /locus_tag="Dhaf_2335" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.928) with cleavage site probability 0.822 at residue 27" gene complement(2522769..2523644) /locus_tag="Dhaf_2336" /db_xref="GeneID:7259305" CDS complement(2522769..2523644) /locus_tag="Dhaf_2336" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002458803.1" /db_xref="GI:219668368" /db_xref="GeneID:7259305" /translation="MEELALILFSICLQAAIGLMIFATLAKYLYKDASYKVAVVSAAA LAVIGLLASFLHLGQPFRAVNSLAHFATSWLSREIWLTSIFTGLTVVTALLLLFKPAS QGLVRTFMALAAVFGLLDVYAMASVYTSTSVSAWNYSAVTVEFYAAAISMGALLFLTL SGSEGSKVRQPAVIITGIAVALQVAAMVGYYIQLGASSSSAAQQSLALLSGMSGAMAV KWLFILLGTGLLLFPIQKQQLSVNSSGQAAAEVAAAGLSGTTIYIAAALLVIGQIVGR YLFYAMMIASRVGLS" gene complement(2523648..2524226) /locus_tag="Dhaf_2337" /db_xref="GeneID:7259306" CDS complement(2523648..2524226) /locus_tag="Dhaf_2337" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458804.1" /db_xref="GI:219668369" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259306" /translation="MANMGFYFNMSICIGCRTCQVACKDKNNLQPGTIFRQVRTFETG SFPKVGLYHYSATCNHCAEAKCVKGCPTGALHFADDGTVQHDKNKCIGCQYCTWNCPY SVPQFIEAAGIIGKCDSCKDLRDKGENPACVDACLMRCLEFGDLDELTADHGPKLVRD LPILPTSSMTNPSLLITPRSHALDPNVQEKEV" gene complement(2524243..2526897) /locus_tag="Dhaf_2338" /db_xref="GeneID:7259307" CDS complement(2524243..2526897) /locus_tag="Dhaf_2338" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mta:Moth_1389 trimethylamine-N-oxide reductase (cytochrome c)" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458805.1" /db_xref="GI:219668370" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7259307" /translation="MASLLKKIADKQISRRTFLAATAAGTAGLALAGCSGNILTPAGA NLDTAKEGKWVSATCWHNCGGRCVNKAYVVDGVIVRQKTDDTRPDTPDAPQQRGCLRG RSQKHQAQGVDRLKYPMKRKNWEPGGGKKELRGQDEWVRISWDEALDILTSELQRIKG AYGNASILVPGEANSEVMNLMSIYGGFVPSWGTMSFGSWFITPHIIGFADNLFDPKAL NDRFDMRKTDLVVAFGINPAWSSLGNPMYHFLQMKEAGTKFIIIDPFYTDTAATLEAE WIPIKPATDMTLLLAMAYTLIVEDDPVNKPLIDWDFLNRCTVGFDVEHMPADAETNEN FKDYVLGKYDNIPKTPEWASEICGIDPHTIKYLARAIGMQNKVSILASWASGRAQNSD NLPQMFMTLGAMTGHFGKSGHMTGASCWNYAGNPGPALVNPGGSGEPFLGSPLKEVLC EADMWTGLLRKKYLPNSIMKTIKYSPPTWQDTVKGVDLKTRVQEEDINIQMIWHTSEA TLQTRDGMNKGIEAHRAVEFVVSQSHFLTTNSKYADLVLPVTTLWERAGDIDGLFSNR DVLIVSSQVIEPIFEAKDDNWIAVEVGKRLGLDVSQIVVSDRKQQLFNKLAGSTVVKE DGKTFEPLVDITAEDISEWGVSGQPQTGRIPLTKLLEDGVYQVERHEGDNYGFIAYED FRKDPEKNPVNSVSGKLEIYSQTLADIINNLGYTKISPYPKYVPPIQGYEATFSDWQS KAKGAYPYQLITPHYLRRSHSIFDNILQLREACPNPVFLSAQDAAAKGIKDKDTVLIT SEFGQVLRNACVTERLVPGVVALPHGSWCDVDEKTGIDHGGADNILSGNVPTGQGLSG WNTCNVNLEKWTGAPLIPDVEKPQRIFS" sig_peptide complement(2524243..2524341) /locus_tag="Dhaf_2338" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.663 at residue 33" gene 2527114..2528343 /locus_tag="Dhaf_2339" /db_xref="GeneID:7259308" CDS 2527114..2528343 /locus_tag="Dhaf_2339" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002458806.1" /db_xref="GI:219668371" /db_xref="GeneID:7259308" /translation="MNKEAIIYNYLRELLEAYGQGLDALTYTLSKLLKLPIIVANTAY ETIATTHLHPDLDSFQVENDEQGVSHKKLYFCTIKTDTLGLRGLGRAIAPAGRVLGYL FLVTDKAEGSDLDFYETLLDNVESLYANSLKNQLELKQKKNKSKDAFFYDLLYGNLKR NEDIMNRGEVWGWDFRHPHAVLLLKVRDVELFSPDRHLIDALQRIVERGLINRYGKNP AVTVHRNEVIALVHSASRKRSEQKQDIKALAGNILNQTADTELNKRIAFGVGQTYDEP IDLFRSYQEAKVVIDMGGLLGVKVPFFSDMGLERVLYKHDIQDLKEYRDQVLGDLRKD ESGESLLEILKTFTMNQFDVNKTAQDLFIHRNTLRTRLSKIEAILDRPLDDMSTRLDL TAVLKIEQLHGLDLESE" gene complement(2528654..2529343) /locus_tag="Dhaf_2340" /db_xref="GeneID:7259309" CDS complement(2528654..2529343) /locus_tag="Dhaf_2340" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: amt:Amet_1329 cytoplasmic chaperone TorD family protein" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002458807.1" /db_xref="GI:219668372" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7259309" /translation="MATQDDGIAIILANRHYIYQLLQHIFGIEPNRELLDIATNQHTQ EALELMLDEENCDLNTYLALLTKLRLALSADPDLTLDKLTSEYTSLMIGPHKLPAPPW ESVYVTKERALFQESTLKVRRTYLNYQFLPANYPHEADDHLAFELDFMAHLAKLTLER FDQQKIDEVKKLLDDQKAFLQDHLLVWIGDFAEDMQKSKTHHFYPQMAALTKQFLEAD DLALDELMDLF" gene complement(2529391..2529966) /locus_tag="Dhaf_2341" /db_xref="GeneID:7259310" CDS complement(2529391..2529966) /locus_tag="Dhaf_2341" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458808.1" /db_xref="GI:219668373" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259310" /translation="MALGFYFDINKCIGCRTCQVACKDRNRLDVGILFRRVKSYETGL YPDARLYHYSSACNHCSNAKCVKGCPADALYYADDGTVQHEKNKCIGCRYCTWNCPYG VPQFIEETGTIGKCDSCKGLRDKGKNPVCVDACLMRCLEFGDLDELAAKHGADVIQDL PILPSSTLTNPSVLIKPKKCALSPHYSEKYF" gene complement(2530036..2531397) /locus_tag="Dhaf_2342" /db_xref="GeneID:7259311" CDS complement(2530036..2531397) /locus_tag="Dhaf_2342" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: deh:cbdb_A244 putative membrane bound regulatory protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002458809.1" /db_xref="GI:219668374" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7259311" /translation="MNHERFSIRHITIIIPVVLILAAIVYQQFVNKQETVAFIQHLEP AASRCEPIAGVSGYPAYKLWDKDDTILGYAVAAGASGYGGPLGVLVYLGIDGILKNVI ITENCETPAYFNRVLNEGYLDKFIGKQAHDPFEPGQDIDAVSGATYTVKGIAQAVRKG SWQVGKHELGLQVPAGTRFSLGWQELGLIILYGLVFIAVSCRCHTLRPWVLAISLLFL GFFLNSALSLANLTSLISGNLPDPLERPFWYFLTLGVLILTLLWGRNFYCAWLCPFGG LQEGIYKVLGFMKFNPSSPMMALARKIRWGILWAAVMAALIFNNPSIASYEPFAVSFG GQGNLGHWLTLCLVLITGTFIYRVWCRLVCPVGTVLNFLASVKRRTRMLFRPNGPVSR PVDSVFEHPLTCAEVICSECGAGQARVRWADLPGKEKVFLGILVVYVLSIIITLSLNI LSI" gene complement(2531417..2532208) /locus_tag="Dhaf_2343" /db_xref="GeneID:7259312" CDS complement(2531417..2532208) /locus_tag="Dhaf_2343" /inference="protein motif:COG:COG3302" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="DMSO reductase anchor subunit-like protein" /protein_id="YP_002458810.1" /db_xref="GI:219668375" /db_xref="GeneID:7259312" /translation="MVQDVKLVIFSLGLQAAIGIMIAMMIAGKMNGRNEYKRASVASA LLGTISLLAFVFYLGRPAFIFNAISQFSHSWLSRVLVFSLLFIGFAIIHAVVQYVNPA IKRFGWTAGAVGLIDVIFMANVYMSTSRPGWQSIVPLIDFLAVTMVLGIALFWTIQLS GTDIKNQKMYGLIGLSSAVILGVVTFLNYNGFDTQTTGLLLGIHLLLFLTGAVLLFIP SLKPAKEQTGSGRMAMVYIGTAALGGSLMVSRYLFYAVLITGSGL" gene complement(2532298..2533110) /locus_tag="Dhaf_2344" /db_xref="GeneID:7259313" CDS complement(2532298..2533110) /locus_tag="Dhaf_2344" /inference="similar to AA sequence:KEGG:SSPA0319" /note="KEGG: sek:SSPA0319 putative anaerobic reductase component" /codon_start=1 /transl_table=11 /product="putative anaerobic reductase component" /protein_id="YP_002458811.1" /db_xref="GI:219668376" /db_xref="GeneID:7259313" /translation="MEELALIIFTICVQAAVGLMLFTAVAKQLNKDGIFKTAVAPAAG LAIVGLLASFLHLGHPIAAVNTLMGFATSWLSREIWFTSAFTGLTVLAVLLIYFKPAA KKAINIFIILAAVIGLIDVLAMASVYTSSSVAAWQSNSIVVEFYAAAISMGALLFLAL SAKEDTGRMRKIVAIAVAAAFVIQAVAMIPYYNGFGASDNLALQQSHAILSSMTPAMV LKWAAILVGAGLLFLPAREKSKDAPVILGATALVVLGQAVGRYLFFAIMIVS" sig_peptide complement(2532298..2532378) /locus_tag="Dhaf_2344" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.613) with cleavage site probability 0.590 at residue 27" gene complement(2533114..2533689) /locus_tag="Dhaf_2345" /db_xref="GeneID:7259314" CDS complement(2533114..2533689) /locus_tag="Dhaf_2345" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458812.1" /db_xref="GI:219668377" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259314" /translation="MALGFYFDVNKCIGCRTCQVACKDRNRLDVGILFRRVKSYETGA YPAARVYHYSGACNHCQEAKCVQGCPTGALHFADDGTVQHDRKKCVGCKYCTWNCPYS VPQFIEEAGVIGKCDSCKDLRDAGENPVCVDACLMRCLEFGDLDQLAAKHGAHLVKEL PVLPSAQVTNPSLLINPRKFSLDPQYKEVEV" gene complement(2533709..2536348) /locus_tag="Dhaf_2346" /db_xref="GeneID:7259315" CDS complement(2533709..2536348) /locus_tag="Dhaf_2346" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mta:Moth_1389 trimethylamine-N-oxide reductase (cytochrome c)" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458813.1" /db_xref="GI:219668378" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7259315" /translation="MANLFQKISEKQISRRTFLAATAAGTASLALAGCGTALAPVGAN YDAAAINGEGQWIPAACWFNCGYKCYNAALVVDNVVVRQKTDDTHPDSFNNPQLRGCL RGRAQQQQAFGVDRIKYPMKRKHWEPLTGGDKSLRGKDEWVRISWDEALDYVAAELKS AKEKYGNSSILMPTWGDNFCDFYNAINGFGGYTTVQDTSSVGTYLHVSGILGILPAGM NDANDRLDLLKSETIVLYGCNPAWASAGLPSYNLVHAKEAGAKFIYVGPSYNETANLV DAKWIQVRPGTDTAFLLSIAYVMVTEDDPLSNPIIDWDFLNRCTVGFDAEHMPADAAL NENFKDYILGKYDNQPKTPEWASEICGTPVQDIVWYAKEMRKDKKVTVLHASAPARCN NADDFPQILMTVAAMGGHFGKPGHACGSGQYYQSTNCGPNLVMMGASGAPVIPNPCTD IITGPELWDAVLSGKYNRTGPALWGDLASVGPKDIDIHVIIHSWRNSLQTTQGIKKGI EAHRKVDFVVSCAYSLNASAQYSDIVLPIVTQWERQSSYFYLGFYNRDVQFFPSKVVE PLYEAKSDQWIGIELGKRLGIDVSQAYPLTEEQQYLNIIAGTTVINKEGTDYETLVTI TEEDLAWWASKYGKTDGKPQQGRIGLKELMEQGKYQIERHEGDNFGNITYEAFVKDPK NNPLGSKSGKFEIYCQTKADRINAMGRSTLKPYPSYIQPLNGYEQSFKDWGKKIKGDY PYQVTNPHYLRRAHTGFDYLPWLREAMPNPVFISALDAEEKGIKDGDTVLLTNPHGKV LRQASVSQRLMPGYIELPHGTWLELDEATGIDKSGSDNYLCAPITSGQGVSGYNTQLV NMEKYDGAPLTPDHLWPMRVVKL" sig_peptide complement(2533709..2533807) /locus_tag="Dhaf_2346" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.498 at residue 33" gene 2536733..2537959 /locus_tag="Dhaf_2347" /db_xref="GeneID:7259316" CDS 2536733..2537959 /locus_tag="Dhaf_2347" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002458814.1" /db_xref="GI:219668379" /db_xref="GeneID:7259316" /translation="MGNVSSMPNYMRKLLKTSGQGLDALTCAIAEVLNQPILVSTPTY ETLSTTLLHPDLDSFQMVIEGERGDNETLFFCTLSTEALHLKGAGWAIAPNGRILGYL FVLYDEVKPDFEEFQAIIETALSLYSIHLQNKLELKQEKHKTKNAFFYDLLYGNLKCN EDIMTMGEVWGWDFHRPHTVLLLRVPDLESHSPDWHLMEVLQKTVDRTLINRYYKNPA TTVNRNEVVVILPAESEKAAERKPEITSLIEGLSNQFKTTVSDYRIICGVGKTYAQPN DLFRSYQEAKVACEMGSLLEVEVPFFSDMGLERILYKHDLEDLKEYYHHVLGDLPEED EGEDNLVWLLESLVDNQFDMNKTAQATFLHRNTLRYRLNKIEGILGRSLADINTRLDL AAAFKIRRLHKIHLLS" gene 2537997..2539988 /locus_tag="Dhaf_2348" /db_xref="GeneID:7259317" CDS 2537997..2539988 /locus_tag="Dhaf_2348" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: see:SNSL254_A0664 molybdopterin-containing oxidoreductase catalytic subunit" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458815.1" /db_xref="GI:219668380" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7259317" /translation="MPTFRNTCPRHCYGSCSMISHMSGGKLTRVVGDSEHGYTRGRLC AKGYSLIQYALDEYRLKYPLRQVRRGSGEWRRISWDQAYEIIASKMIELNTRYGSNLG LGYYKGNGNAGLLHQAVEGMFAGLGPHTRPIGDICSATGETALRETVNELRNPDPEKM SDAGLIVIWGANPANTNINQMKFIYEARQKGTPLVVIDPLLTHTANRADLYVQINPGT DAWLAWGIAKLLIESDKIDKEFIRQKTREFHRYKQGLEGITLEEVCSHTGVHLRVVEE LADLYARFHPAANWLGFGMQRYPTGGESVKAVSALAALTGSFGSVGGGVYFRHRPQEE FPLHIAKHQGVKQPLLTSSREVPANDFPGRAMKLQEPPLKMLWVSCGNPLAQDYNLRA WRDLFQQMEFIVTVDLYLNSTARQSDLVLPAASFFEEEDLHVSFWHHWLSYNQKVLPA FYEAKSDLQIARELTRKLNELQPGFSNFPAEKEPWDWIAGELSPEIRELYGLEEPADL KRHSYRRKKESLLSGWNYCFSRVQPHLFKDMRETESSLLFPYHLLTPQSLLKFHTQYE TLSWLNGENREEPIIELAEEIACKHTIREDSLVEIYNEHGSISGRAKINPYLPEKIIL VEQSDRYPINHLISGQGKAGESIPYFDCRVNLRRVRSDV" gene 2539981..2540535 /locus_tag="Dhaf_2349" /db_xref="GeneID:7259318" CDS 2539981..2540535 /locus_tag="Dhaf_2349" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1381 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458816.1" /db_xref="GI:219668381" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259318" /translation="MFKRKGFLFNANLCIGCRACEMACRNENHTPANIHWRHVKEIDL GTYLSMACNHCDSPECFRVCPQHAFNKRKDGIVEIDSSLCNGCRLCVKACPYDAPQYN INTNKVTRCQMCYPRQDHGLPPACVEACTTGALTTLDLNDPQLPETVRVIPGFTDIRL TKPSILFYPTRPKRRYFLKQSDNI" gene 2540558..2540914 /locus_tag="Dhaf_2350" /db_xref="GeneID:7259319" CDS 2540558..2540914 /locus_tag="Dhaf_2350" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458817.1" /db_xref="GI:219668382" /db_xref="GeneID:7259319" /translation="MNQDVKDYVAQKAKELLSVRPSCPEAKAAAQNWLDAMGTDREAE QTKKLIAELEMDIMPIDGLIAFTKSATGVRIFGEERVKKMEAHAKELKEAGVKYCDCP ACAAAEAILEKKDELL" gene 2541110..2541960 /locus_tag="Dhaf_2351" /pseudo /db_xref="GeneID:7259320" gene 2542750..2542971 /locus_tag="Dhaf_2352" /db_xref="GeneID:7259321" CDS 2542750..2542971 /locus_tag="Dhaf_2352" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458818.1" /db_xref="GI:219668383" /db_xref="GeneID:7259321" /translation="MNRRAGTGQAQQEEGPAEAMLTAAVEPSRQSRVQEWIWTFPQSI SPARIRSRVYESTPGFLGFSGFAERGASC" gene 2542965..2543360 /locus_tag="Dhaf_2353" /db_xref="GeneID:7259322" CDS 2542965..2543360 /locus_tag="Dhaf_2353" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; KEGG: cpf:CPF_1752 LytTr family DNA-binding response regulator" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_002458819.1" /db_xref="GI:219668384" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7259322" /translation="MLNICLCDDGALQRAYLKLIIQEYESRSGVRFNLSEFSSGEDLL EQFQENPTRFDLYFLDQRMKNITGLETASSIRQRNKDCAIVFVTASEGPGDFEAVSPL RVLNKPAQPAAVYEVLDQVFAALSPGYSR" gene complement(2543645..2543884) /locus_tag="Dhaf_2354" /db_xref="GeneID:7259323" CDS complement(2543645..2543884) /locus_tag="Dhaf_2354" /inference="similar to AA sequence:KEGG:PTH_0422" /note="KEGG: pth:PTH_0422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458820.1" /db_xref="GI:219668385" /db_xref="GeneID:7259323" /translation="MALSTTKVARLIFSTAGGGTFTLTLADPREDVQVTEIVAAMESL IASDIYLTATGALTGIKDVKIVDTTVNDLYDPATG" sig_peptide complement(2543645..2543725) /locus_tag="Dhaf_2354" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.746) with cleavage site probability 0.711 at residue 27" gene complement(2543938..2544162) /locus_tag="Dhaf_2355" /db_xref="GeneID:7259324" CDS complement(2543938..2544162) /locus_tag="Dhaf_2355" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: dth:DICTH_0366 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002458821.1" /db_xref="GI:219668386" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7259324" /translation="MAIEGIPYSAALVVVYQTGLSPLGAPITRQKTFNSIRFDAPEEA VYDAAHALFGLTKHPVLDVFFRKTWELAEE" gene 2544195..2545199 /locus_tag="Dhaf_2356" /db_xref="GeneID:7259325" CDS 2544195..2545199 /locus_tag="Dhaf_2356" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458822.1" /db_xref="GI:219668387" /db_xref="GeneID:7259325" /translation="MNRQTRAVLTSYEVSPAVVTGCHTENFFRLLLRVVTPVMSGPYT VLKTREGMGMSEQVRERTPQVIAAEINSYKVSSGRIQLTCAVEIGRRLIEAKALLPHG EWGKWLEEYVEYSQATAENYMRVAREYGQAGGDSPEGEKAKSETFPILSYSQALTLLD IPEEERAEFIAELDIENMSVRQLQRAIKEREQARQEKKEAEQESRELQKALEGEKEKN SQLEKERDGLKLKAGELEKEKQGLKQEVAERKAENSRLKDKQLFKNNEKLRNQLTAAQ IKNATHKAAFKMEALERAFKEVVYELGLLVKIDKNVHGEYQKNLRKFLLKCLDEKVGD" gene complement(2545302..2545991) /locus_tag="Dhaf_2357" /db_xref="GeneID:7259326" CDS complement(2545302..2545991) /locus_tag="Dhaf_2357" /inference="protein motif:PFAM:PF04607" /note="PFAM: RelA/SpoT domain protein; KEGG: sha:SH0570 hypothetical protein" /codon_start=1 /transl_table=11 /product="RelA/SpoT domain protein" /protein_id="YP_002458823.1" /db_xref="GI:219668388" /db_xref="InterPro:IPR007685" /db_xref="GeneID:7259326" /translation="MIIERKSKVNLPDLTEQDGHLFQSSREDARTSLIKLAQTMQIYN GAMKVVSAKLELLDDEFQFSNKHNPIHHLEYRIKSPLSIGKKLQKYGLPLTVEAARER VLDIAGIRVICNFLDDVYAVEKMLLQQADVTLVKRKDYIEQAKANGYRSLHLVVKVPI FLSGSTEEIPVEIQLRTVAMDYWASLEHMLRYKNKDSDTQQYAAMLLDCAATLADTEK KMLFIRQHIEE" gene complement(2546021..2547880) /locus_tag="Dhaf_2358" /db_xref="GeneID:7259327" CDS complement(2546021..2547880) /locus_tag="Dhaf_2358" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0094 ABC transporter permease" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458824.1" /db_xref="GI:219668389" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259327" /translation="MSEHQTRTQNGGPMGGPASGPPMGGGEKAKDFQGTWGKLIRYCK GYMPVIITALVIAALGTLLQIIGPDQLKNMTNEITKGLPALINGVPVSGAIDFNAVFN IGMLLVCFYAASGIFSFAENFIMATVTAKISKSMRTDIAKKINKLPLKYFDKTSYGDV ISRVTNDVDAIGQTLNQSLDNLVRAVTMFVGSLIMMFYNSWILALVAIGSTLIGFVLM ALIMSKSQKYFTVQQQGLGDINGHIEEIYSGHNVVKAYNGGSKAKKTFEEINTSLYDS GWKSQFMSGMMMPIMGFIGNFGYVAVCVVGAALAMKGTISFGVIVAFMIYIRLFTQPL SQLAQSMQQLQRTAAASERVFEFFAEEELAGESQQLKKLENVKGHVEFQNVHFGYEKD KTIINNFSAQIRAGQKVAIVGPTGAGKTTMVNLLMRFYEIDSGEIRIDGIPISHVSRE NVHDQFCMVLQDTWLFEGTIKENIIYNKQGVTDEEVIAACKSVGIHHFIRTLPQGYDT ILNDKANLSAGQKQLVTIARAIIQNSPLLILDEATSSVDTRTERLVQDAMNKLTQDRT SFVIAHRLSTIKDADLILVMKDGDIIESGDHEELLGKGGFYAELYNSQFEQAS" gene complement(2547877..2549637) /locus_tag="Dhaf_2359" /db_xref="GeneID:7259328" CDS complement(2547877..2549637) /locus_tag="Dhaf_2359" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_1681 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458825.1" /db_xref="GI:219668390" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259328" /translation="MVRIFKYLKAEEWLMAGISLIFIVAQVWLDLKLPDYMAEITTLT QTPNSAISDIWLNGGYMLLCALGSLAAAVVVGFFAAKIAASFSQRLRSLLFNKVESFS MEEINRFSTSSLITRSTNDITQIQMLVVMGLQLVIKAPITAVWAITKISGKGFEWTMV TGVAVLIMIIMVTFLLIVALPKFKKMQTLTDNITRVTRENLTGLRVVRAYNAENYQEE KFETANEELTSTQMFTNRAMAVMMPVMSMLMSGLSLAIYWIGAYLIDAAGALDKLGLF SNMVVFSSYAMQVIMSFMMLVMIFIMLPRASVSAKRINEVLDTEPRILDGTKTEGQPG LRGEVVFKSVSFQYPDAAEPVLEDISFTASPGETVAFIGSTGSGKSTLVNLALRFFDA TQGEILIDGVNVQEYKLEALFNKIGYVPQKAVLFKGTVESNVAYGDNGGEGYPLDEVK KAVQIAQGADFVEKMDGQYQAAIAQGGANVSGGQKQRLAIARAVCRKPEIYIFDDSFS ALDYKTDRVLRSVLKQETAGVTSLIVAQRIGTIMDADQIIVLDEGKIVGKGTHKDLLR DCTVYREIAMSQLSEEELAS" gene complement(2549777..2550259) /locus_tag="Dhaf_2360" /db_xref="GeneID:7259329" CDS complement(2549777..2550259) /locus_tag="Dhaf_2360" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: ckl:CKL_2881 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458826.1" /db_xref="GI:219668391" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7259329" /translation="MPWEENQNSLSYVDKALAAFNEIMANSRKDMMENLNRAHKGELF VLHYLAVCNREVLPSELSAALQASTARISALLGALEKKGQIVRDIDKSNRRNILVTIT EEGRNRAEAEMKEMKNRMVRIFTDMGEADTIEFIRLTRLFSELMQKYSPQEEGGMPSG" gene complement(2550534..2550959) /locus_tag="Dhaf_2361" /db_xref="GeneID:7259330" CDS complement(2550534..2550959) /locus_tag="Dhaf_2361" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: fnu:FN0647 putative cytoplasmic protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, SARP family" /protein_id="YP_002458827.1" /db_xref="GI:219668392" /db_xref="InterPro:IPR013026" /db_xref="GeneID:7259330" /translation="MEDQKNQKPARIPPPAQRKDGIQRYPAGYLLARVGSQIGHGFPA HGFVPAQKVFEDACLKLGVLYAGQGETVQAEEILRRALAMDPYSESICLELLRLLMAQ GMRSKALCLYNRFQKNFEQELGIKIDGRLTEAVHPQSAG" gene 2551493..2551786 /locus_tag="Dhaf_2362" /pseudo /db_xref="GeneID:7259331" gene complement(2551800..2552315) /locus_tag="Dhaf_2363" /db_xref="GeneID:7259332" CDS complement(2551800..2552315) /locus_tag="Dhaf_2363" /EC_number="3.4.11.5" /inference="protein motif:PRIAM:3.4.11.5" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi00582 PaiA" /codon_start=1 /transl_table=11 /product="Prolyl aminopeptidase" /protein_id="YP_002458828.1" /db_xref="GI:219668393" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259332" /translation="MQLTFQQCRPDDVHALRDFSYRTFNDTFAPMNTPATMQAYLEQS FNTNKLHGELSDSNSSFYFLYAGRELAGYLKLNESPAQTDINDPHSLEIERIYVAKEF QGKGFGYVLINKAVEIAKMRKKFYLWLGVWEKNHKAIFFYKKNGFYEAGAHSFFMGEE EQTDFIMRKDL" gene 2552646..2552795 /locus_tag="Dhaf_2364" /db_xref="GeneID:7259333" CDS 2552646..2552795 /locus_tag="Dhaf_2364" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458829.1" /db_xref="GI:219668394" /db_xref="GeneID:7259333" /translation="MCFRPPSAGKPKKCPDCGALNPSVVKNCVKCKADLSAVKTEEKA EDSSQ" gene 2552842..2555175 /locus_tag="Dhaf_2365" /db_xref="GeneID:7259334" CDS 2552842..2555175 /locus_tag="Dhaf_2365" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458830.1" /db_xref="GI:219668395" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7259334" /translation="MADYKEYLSGINRELYHEGEWQWQEGEYTVTRSHQYTAPGCHNS CGVLLYTKDGKLEKVEGDPLNPFNNGKLCMRCLNLVEAVDHPDRLKYPMKRVGERGEN KWQRISWDEAYAMICEKVNYYKKNFGPESIVGVHGTGRNINWQLPMLFNAGIQTPNIS TLFFSGFACYLPRIVGSTAVNGDFMIVDASVQHPDRYANAEWQAPECVIVWGNDPLKS NADGFLGHWLVQCMQMGTKIISVDPRLTWWSARAEVWLPIRPGTDAALAIGMLNIIIE EDLYDHDFVENWTYGFEELAARVKEYPVAKVAEITGLPAEKIQKAARLFAQAKPAAIQ WGLAFEQQISCMSLVLAVADLIGITGNIDVPGGMLLVRHAFNAHRHYNCGSEFTPPEV AAKKLNGAAKGVAENSIVPHADSDVILRAMETGKPYPLKMLWVQSSNSLACPAMDAPR ALEAMKKMEFILVADPFLTPTAVAVADIVLPVGMGPERNSVRNWWTPMRAQSKVCQYY EAKGDEEIVVEFGKRLNPEAFPFENDVDLLNWYLTMDGDYPGNWSDLREKTWEYWDWD AAYRKYEKGMLREDGEMGFNTPTGKLELAPLMYMQWELDPLPFHIEPPEGPVTTPELY AEYPLILTTGARSYEFFHSEHRQLPTMREFHPDPLVTMHPEVAAANGIKEGEWVWIES PRGRFKQKAYLTPGINPQVINAEHGWWFPEQGPENWFGVFDSNPNNLTRAEVTGQGGI GSPIKSMLCKIYKVEEGVNDLISPTEQVVKLGGFKHG" gene 2555168..2555521 /locus_tag="Dhaf_2366" /db_xref="GeneID:7259335" CDS 2555168..2555521 /locus_tag="Dhaf_2366" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002458831.1" /db_xref="GI:219668396" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7259335" /translation="MADKDEKVYGILIDYEFCTGCHSCEVACKKELNLPANQFGIKLT EVGPWPIGEDRWEWVYMPVITKQCNLCEERVAAGKMPSCVQHCQAWCMYHGPVEELVK KMQGKSRMSLIAPRQ" gene 2555693..2556508 /locus_tag="Dhaf_2367" /db_xref="GeneID:7259336" CDS 2555693..2556508 /locus_tag="Dhaf_2367" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002458832.1" /db_xref="GI:219668397" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7259336" /translation="MIIIGEKINGTIPRVKEAIATKDERFISELALKQGEAGAHYIDV CAGTPPEQEVETLEWLIHSVQKATDTPICLDSPNPKAIEAVFNDVKRPGLINSVSLEG DKCEVVFPLIQGTSWQAVALTCDNGGIPKDAQSRVRIAQKLVEKAQAYGITPDRIHMD PLVIALSADNQSLLNFAEGTRKIKALYPDIKVTSGLSNISFGMPLRKIINQNFLALAM FAGINSAILDPLNRELMATLLAVEALLGQDRHCRNFANAYRKQRIGPVKAAAG" gene 2556541..2557182 /locus_tag="Dhaf_2368" /db_xref="GeneID:7259337" CDS 2556541..2557182 /locus_tag="Dhaf_2368" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2086 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002458833.1" /db_xref="GI:219668398" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7259337" /translation="MIDLRKLAQWISDLDEDAVMDALHDFVAANPSQEEAQEVVNACQ RGMAMVGELFEKNEYYVGDLIFSGEILANALEVLKPVLGAKDAAKAGSIVLGTVEGDL HDIGKNIFKGMAEAAGFEVYDLGIDQSAGAFVAKIKEVKPAIVGMSGVLTLALDSMKS IVVALEEAGLRKDLKVIIGGNPVTEDACRNIGADAFTINAAEGVKICKSWVAQ" gene 2557203..2558369 /locus_tag="Dhaf_2369" /db_xref="GeneID:7259338" CDS 2557203..2558369 /locus_tag="Dhaf_2369" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mta:Moth_1317 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458834.1" /db_xref="GI:219668399" /db_xref="GeneID:7259338" /translation="MERAQELYQERLTRLNTAFANGKPDCVPILSMAAEYVYRIQDIR PIDAYQDIGVMEKAYRNFFSEVYFDGFLIPVIGRNKLDTLRLLGGGTSQYLPDGSFQT KPGSINVMEPSEYDDLIADPARFFIEKVMPRRFKLLAEDYSAEKYETFVEALRSLLAG RSATQPVTDMLKHELGLVELQQGGMYNPVDIILDFLRDFQGISGDIKRRPEAVRDAGL AIMDWLLAMATMNPPDENKRITIPMHLPTFLRPKEFETVYWPSYKKFAYALAERGYQI YYLFEGNYEHLHDYLQELPKNRVSGLFEHDDLKLVKKNLGHMMCIVGGMPTRMLYYQT PEECIAHVRNVLDTVAVDGGFILGPDVPMLSKTDGKLANFKAVNDFVHHYGLYS" gene 2558396..2558506 /locus_tag="Dhaf_2370" /db_xref="GeneID:7259339" CDS 2558396..2558506 /locus_tag="Dhaf_2370" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458835.1" /db_xref="GI:219668400" /db_xref="GeneID:7259339" /translation="MTNYEMVQKAAEELFKAKTPEQVETFTQFIAFLIMG" gene 2558678..2559955 /locus_tag="Dhaf_2371" /db_xref="GeneID:7259340" CDS 2558678..2559955 /locus_tag="Dhaf_2371" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: lci:LCK_01249 putative permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458836.1" /db_xref="GI:219668401" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259340" /translation="MSEPKPGQKPHYGGAVKAAVLSIMLLQYLQALTSPAAGAILKHF EQFGYTSLDIKQIQTIPTLVMIFACMAIIPMANKLRKKTILKIAMALIFFGGIAPGIG PDSMMFIYACRVVFGCGYGMIYALASSFIVDLFDGPEQKQMMGWKTAAGSIGGIIFQT VGGFLAAMYWKYAFLGFLVALPFILLILWKCPDPSGLEEFNPAKEAGRPKAKVEKGHW FVIVLAALNVMIFSSFMINMPIVIMTEGLGTPNTIALVMNLFTVGIFLGSFTYGWTTK LLKRFDIPFTILVYGIVLVILPRFVTLPVYMICALIFGWAFGAYNPSLVLAVSRQGSA LAATAAIAFFVAGQGLGQFIQPYFMLLTGVFGLNEPWGELAPWVMAGPMLIAISICSF IWVVKITNRKFPYEGNVKAVGKADQTMESPLDS" gene 2560070..2561443 /locus_tag="Dhaf_2372" /db_xref="GeneID:7259341" CDS 2560070..2561443 /locus_tag="Dhaf_2372" /inference="protein motif:TFAM:TIGR00792" /note="TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: cdf:CD0034 putative xylose transporter" /codon_start=1 /transl_table=11 /product="sugar (Glycoside-Pentoside-Hexuronide) transporter" /protein_id="YP_002458837.1" /db_xref="GI:219668402" /db_xref="InterPro:IPR001927" /db_xref="GeneID:7259341" /translation="MEILKNAETVSPQSFFDERVAWREKAAYAMGDVGANVVWATLTS FMTFFFTDVAGIGAAAVGSIFLISRILDAFSDVGMGVLVDRTNHKYDKARPWLLWVAI PYGIGAVLLFSVPDFGMTGKIIYAFLTYNLMSTVLYTVFAQPYHTLMALMTRDQYQRS LLTVMRMFAGVCTAIVINNATLPLVEHFGGGAGGWQKTMAVYGAIAAVIIILVFLFTK ERIRGVSAKKTPVREGLKALAANKYWLMILVVGVLVYILFALPGVNIYYARYVLGNPM YLGSIMTCTFVPNLLCFAAIPLALKIFSKRMLVFIGFLFYAIGTGALLVEPMNINYVL TGVFIKGLGFAPLAGTLYAFIADTIEYGEWKTGLRMEGLIMSAASFGQKVGTGIGLAI IGWLLAWGNYVGNAATQSPEALCVISFMFIQLPLCIYAAIIAIMYFYKLDREYPAIIA ELNQRRS" gene 2561644..2563686 /locus_tag="Dhaf_2373" /db_xref="GeneID:7259342" CDS 2561644..2563686 /locus_tag="Dhaf_2373" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: swo:Swol_1699 acetoin operon expression regulatory protein" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458838.1" /db_xref="GI:219668403" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7259342" /translation="MIVTEKSFSEQTYWEEIARCKTQFVNNGEDPLLNPYLRKEVAES WIRSKNNGVFPWTSYSKYYLTEEEWGVLKEQNERLIHIAQPLISNYLGLASTNGHSLE LFDPSGAFLLGIHINISSTPVLSIVFNESTTGTTAHGLATYHKKPFQLIGPENYLDVW QNMICSAAPILDEMGEVLGTLALVQDMGEKPWEKNRSNLHIHSLGWVSSLAEAIGNQI KIQNSYDVLNQVNNDLRKATETLKIILEFIDEGVITIEPNGRILSSNHEGSRILNVNH GEIRGRNIGEFLLPRSALMDYVADKKTVDYMEEYVVNGREEKQYLVSLRPVYKQGNDE LDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEAMLKAKALARRFARTRENVL LLGESGTGKELFAQAIHNSHRPGGPFIAVNCAAMPRNLIESELFGYESGSFTGAEKNG RPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRLITATN QDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLPAAV ISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQIMLSHLPKELSEKRTALPMVSE KECDKPEELFSMKDLEKVTIKKALERAGNSVAIASDLLGISKTTLYRKLKEHNIHY" gene complement(2563802..2564137) /locus_tag="Dhaf_2374" /db_xref="GeneID:7259343" CDS complement(2563802..2564137) /locus_tag="Dhaf_2374" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002458839.1" /db_xref="GI:219668404" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7259343" /translation="MSRNGLLINYGWCSGCHSCELACRNAHGIPLEQWGIKLTQVGPF KLSGERTEWDYIPVPTSLCDLCADRVAEGRKPACVHNCLTQCIEYGPLDELMKSMTAK GKKVTLYLP" gene complement(2564178..2566421) /locus_tag="Dhaf_2375" /db_xref="GeneID:7259344" CDS complement(2564178..2566421) /locus_tag="Dhaf_2375" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458840.1" /db_xref="GI:219668405" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7259344" /translation="MAVKYKKGTEKDYTVRTCAWSAPGCHPTGCGLLMHVKDGRLVEV EGDPEHPVSQGRVCVRCLSLPEAVYHPDRILYPMKRAGKKGGDKWERITWDEAYDLIE EKVRYYQKQYGPESIAMMGGTGREATFYFPALSYAVLQTPNNVGVLSGLSCYGPRCAV TEYVLGAGYPEIDYAAYFADRYDNPEFQLPEYIIIWGKSPLESNSDGFFGHAIVDMMK RGTKIIAVDPRVTWLTSRAEYHLQLRPGTDAALALGMLNVIINEDLYDHEFVEKWTFG LDALRERVQEYSPRRVADICWIKEETIVQAARAFAQAGNSSIQWGVALDMNWNGIQAI QGVLYLMTLTGNLDVPGGNTLAEPASFMGKWRYDTHKQIPEEIYENRIGNKEFPFFNY GLMACSPDNTLEYFEQQQPYPIKMVWSNSQNPLANAAPVPKRWYEAFKKIEFWVCQEL FMTPTVAAYADIVLPIATFAEHDGVVIPHFGRNSAFLGAVNQCIERVGECKSDLEICF ELGKRLNPQAWPWQTVSDFFTEQIEEKTGLDYPGLKDKVVQQQHYVYRKYEQGLLRSD GEPGFETLTGLIELKATIFESWGEDPLPYFQEPPFSPYRTPELFAQYPLVLTTGGRKF TSFHSEHRQIPSLRQITPWPTVEIHPDTAAGLGIQDGDWVAIENHLGQCRMKALVQPT VHPKVVHALHGWWYPEQAGTEPNLFGTFKSNINMLMPHKKIGKLGLGANYKSNLCKVY KVSGLDD" gene complement(2566446..2566613) /locus_tag="Dhaf_2376" /db_xref="GeneID:7259345" CDS complement(2566446..2566613) /locus_tag="Dhaf_2376" /inference="similar to AA sequence:KEGG:Glov_0916" /note="KEGG: glo:Glov_0916 zinc finger CDGSH-type domain protein" /codon_start=1 /transl_table=11 /product="zinc finger CDGSH-type domain protein" /protein_id="YP_002458841.1" /db_xref="GI:219668406" /db_xref="GeneID:7259345" /translation="MCFRPAAVSKVVICSGCQKKLTLQQGHMAAKCPFCGTEIAKEEV KNPQPPNHSER" gene 2567128..2569503 /locus_tag="Dhaf_2377" /db_xref="GeneID:7259346" CDS 2567128..2569503 /locus_tag="Dhaf_2377" /EC_number="1.2.1.2" /inference="protein motif:PRIAM:1.2.1.2" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="Formate dehydrogenase" /protein_id="YP_002458842.1" /db_xref="GI:219668407" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7259346" /translation="MEFKNDLGKPWKYEEDGFTVIRTSVWSPPGCHPVGCGLKLYVNQ AGILEKIEGDENDPITKGRLCVRCLDLKEVIYNPSRILYPMKRHPQDRGKADKWERTT WEEAYAMIKQKRDFVIKNYGVEAIAAYSGTGRNGGIMVQEFAHEVLGTPNACYTQSGY ACYTPRAAATAAITGCYYPEIDYGGGVEGTYDNPDYKIPEVIVLWGKEPLPSNGDGLF GHALIDLMKRGTQIISVDPRVNWLATRSAVHLRLRPGTDAAMGMAWLNVIINEELYDR DFVENWCYGFDELKERVADMTPEKAAEICQVDGEIIRKAARMYAVAAQAGIAWGLAID QNQNGTQAAQCILSLIAITGNLDKPGGQLVGEAKPAVPEAEDGMTSTYAATGHQLDGW VALGEELRNKTIGMQEYPLYVNSIRNAHADLMLDCLMTDKPYRIVMAMIQSTNIIAPT NSAESKKWHQALKRLDFIFATDVFMTPTIQACADLFLPLKCAPEHDSINYTHYSGSQI HFGITNKAIEVGQCKSDVEIAVELGKYLGREQYVTRHTDEKAWLNNRRAQRNLMGGGK EDFDTIREKVHIQQGRKYYKYKTGHLRPDRQTGFLTTTGRVELYSYMFEGVGSDPLPY YQEPPFSPYSTPELAKEYPFILTTGARTYAYFHSEHRQVPLLRELNPNPLLEVNPEDA AALGLLEGQWVEISNQFGEAKFKAKVTPTVRQGTVMAQHGWWFPEQEADEPNLSGVWH SNVNTLIPNHYNGSLGFGAPYKCMICKITPLKESYDVDMNRFQEKFRKVAG" gene 2569504..2569854 /locus_tag="Dhaf_2378" /db_xref="GeneID:7259347" CDS 2569504..2569854 /locus_tag="Dhaf_2378" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002458843.1" /db_xref="GI:219668408" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7259347" /translation="MEGYGLLIDYEYCTGCQSCEIACKTEHDFPVGKWGIRVFEDGPW QKDDANDEGSHFNWNKVPIPTDLCDGCQDRVAAGRKPTCVHHCLADVMRFGTLEELSA ELARKPKQVLWSIK" gene 2569928..2570119 /locus_tag="Dhaf_2379" /db_xref="GeneID:7259348" CDS 2569928..2570119 /locus_tag="Dhaf_2379" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458844.1" /db_xref="GI:219668409" /db_xref="GeneID:7259348" /translation="MCGYGNICIGCNRCGKSTAMPGQKRLCLACGTEPPADAKYCPVC QRKLPPVFPSAAGEIQPET" gene complement(2570292..2572940) /locus_tag="Dhaf_2380" /db_xref="GeneID:7259349" CDS complement(2570292..2572940) /locus_tag="Dhaf_2380" /EC_number="3.6.3.8" /inference="protein motif:TFAM:TIGR01494" /note="KEGG: cbf:CLI_0611 calcium-translocating P-type ATPase, PMCA-type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein" /codon_start=1 /transl_table=11 /product="ATPase, P-type (transporting), HAD superfamily, subfamily IC" /protein_id="YP_002458845.1" /db_xref="GI:219668410" /db_xref="InterPro:IPR000695" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR004014" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006068" /db_xref="InterPro:IPR008250" /db_xref="GeneID:7259349" /translation="MWFAKSQEETLKELNVNPATGLTSQEVQARLEQYGTNKLKGKPK KSLIALFFAQLKDMLIYVLIGAALITFFIGEYVDSIIILLVVVLNAAIGVFQEFKAEK AIEALQQMTTPKTLVRRNGEVLEIQSEELVPGDIVLIDAGRFIPADLRLIESANLQIE ESALTGESVPTEKVAQEVLQDPKTPLGDQVNMAFMSTLATYGRGEGVVVGTAMETEIG KIAKILDEEIDEMTPLQKRMEELGKVLGYLAIGICVLIFVISFFQKRDLFEMFLTAIS LAVAAIPEGLPAIVAIVLALGVTRMSKINAIVKKLPAVETLGSVNIICSDKTGTLTQN QMTVVKYYTLNNLQEVPREGSDFDASIQAKELMKTFVLCSDATYEQGQGTGDPTEIAL VVLGERFNLGRKTLHAEYKRVGENPFDSDRKLMSTLNEENTGYRVHTKGAIDNLLKLS TTALVDGKVVLLTEEMKQEYLRVADEMSDAALRVLGAAYKDVDRVISPQEMEQALTLI GMVGMIDPPRLEVRDSIRDAKLAGITPVMITGDHKNTAVAIAKELGIAESIEESMTGA EIDQLSDEEFSRRIGSLRVFARVSPEHKVKIVKAFKSHGNIVSMTGDGVNDAPSLKNA DIGVAMGITGTDVSKGAADMILTDDNFTTIVHAIEEGRNIYNNIKKSVIFLLSCNLGE IVAIFFSVLFFWPVPLLATQLLWINLITDTLPAIALGVDPGDKEVMRQKPRNPKESFF AHGSGIRAIIGGVLIGALTLVAFYIGLREYGYTLGSTDIPADILTYARTMAFVVLAAS QLFYSLSMRHATKSIFAVGIFSNRYLIAAIIVGLLLQLMVISVPFLSSAFKLQMLSLR DWGIVLCLAVIPLVLKEIYKLFLRSK" gene complement(2572986..2574152) /locus_tag="Dhaf_2381" /db_xref="GeneID:7259350" CDS complement(2572986..2574152) /locus_tag="Dhaf_2381" /inference="protein motif:TFAM:TIGR01297" /note="TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aoe:Clos_0643 cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_002458846.1" /db_xref="GI:219668411" /db_xref="InterPro:IPR002524" /db_xref="GeneID:7259350" /translation="MIKFIIRRFIPHHENISDKRVREQYGVLAGALGIICNLILFILK LLLGLFMNSIAVISDAFNNLSDCGSSVIAIIAAKMSNRPPDIEHPFGHGRIEYISSLV VSFIIFMVGIELLKNSFTKILHPEEVLFSWISLVILLFSVVLKIWMFSYNRYIGHTIN SGINKATAYDSLNDALATSAVILSTLIGHAFDLAIDGYVGLLISLFILYTGYNVAKET VNILLGSSPNPELCNQVKDFVNEGMYIIGTHDLKVHDYGPGRTIASIHAEIQDTVNIV DAHLIIDDLEKRISEELNINIVIHIDPITTDKEKIKGMEEIVKSAVKEVNNSFVAHNI RMTIGYRCMNVIFELSVPSPQVPAADTIRKDIIHKLKEKDPQLNVIVNSVTALT" gene 2574359..2575258 /locus_tag="Dhaf_2382" /db_xref="GeneID:7259351" CDS 2574359..2575258 /locus_tag="Dhaf_2382" /inference="similar to AA sequence:KEGG:Dred_2230" /note="KEGG: drm:Dred_2230 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458847.1" /db_xref="GI:219668412" /db_xref="GeneID:7259351" /translation="MIDFKKIEMRDKEWVKPLLEAADLGGCHQNFTNLFSWSGTYHYQ VAQVEDYLVIKGRLGETYYYFYPAGTGDVQPVLEAMKKDAQENGHEFIVLGISPENMA TLKELYPEHFEYEEMRDSFDYVYQAEKLATLAGRKLQAKRNHINRFEANHIWAFELLT PENLAECWEMNLEWCRRNDCKDDEQLRAEYCAVKRDFDYFTDLELEGGLLRADGRIVA FTMGERLNSDTYVVHVEKAFGEIQGAYQMINREFVRWIRETYPDMIYVNREEDMGYEG LRKAKLSYHPDKMEEKFLARYFA" gene 2575276..2576184 /locus_tag="Dhaf_2383" /db_xref="GeneID:7259352" CDS 2575276..2576184 /locus_tag="Dhaf_2383" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458848.1" /db_xref="GI:219668413" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259352" /translation="MKEMRPALWSDMERLKAIWKLCFGDEDSFIDFYFARRFQPEQVA VYLVDQVITAMLTMIPIQYVDGPEGEKTRQGAMLYAIATHPDFQRRGMASELMEWALA YLGSRQIELCVLVPAEEKLFGFYERQGYQAGFTLREAVLNRDEIRVMGKETPDLAVAA ALPQTYNSIRNQLLRGTPYIAYGEEEVAYQKQVSRLSGADLYELSSGEVQGCAAVECL TEDKVLVKELLIPEALIAQGLKALAQTIPAQEFIIRTPAPWGQGIGGQIRSFGMLKRT SSRESGPTNQEDSLPGEGAYLGLAFD" gene complement(2576306..2577283) /locus_tag="Dhaf_2384" /db_xref="GeneID:7259353" CDS complement(2576306..2577283) /locus_tag="Dhaf_2384" /inference="similar to AA sequence:KEGG:BAS4715" /note="KEGG: bat:BAS4715 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458849.1" /db_xref="GI:219668414" /db_xref="InterPro:IPR010106" /db_xref="GeneID:7259353" /translation="MKEFISLKIDYAFKLIFGKEGNEAILIAFLNAALKLPQERRIEE ITIINPELNKEYPEDKKSILDVRAITSQGMQINIEIQLSNQYDMEKRSLYYWAQMYSR QIREGMAYKELTKTVSINIVDFNYLKQTSSYHNVFHLYEDEEKFQLTDVLEIHFMELP KLLAKWRKREISLWENELVRWLLLLEGADNQEILQILEEIAMKDPVLYQAMNAWEETS EDPRIREAYFDRRKAILDEKAAIREAELRLQEALEEGMAKGIAEGRAKGIAEGKAEGK AEGRAEGRAEGRAEGRAEVAKKLLVLGFEITKIAEATGLSEEEISGLKD" gene 2577565..2578422 /locus_tag="Dhaf_2385" /db_xref="GeneID:7259354" CDS 2577565..2578422 /locus_tag="Dhaf_2385" /inference="protein motif:TFAM:TIGR00762" /note="TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC3284 hypothetical protein" /codon_start=1 /transl_table=11 /product="degV family protein" /protein_id="YP_002458850.1" /db_xref="GI:219668415" /db_xref="InterPro:IPR003797" /db_xref="GeneID:7259354" /translation="MAVRVLTDSTSYIDDEARQELEIRRVSLNVSFGDQSLRESDLAN EEFYKMMEAKGIPTSSQPSIGEFYQEMEKVVSAGESLCGIFLSSDMSGTFSTAQLAKE MVLENYPDAQIEIIDSRSNSMQLGFAVMQGARAAQARKSLAEVKEVVLQTIKRSRFLF IPDNLDYLKKGGRIGGAGALIGNLFKIIPILTVEEGKVLVLTKVRHKEKAVLAMIDKM LEDIGAYGLGEIAVHHINCLDEAQALVKKIKDKVTANIKVMPIGPVIGLHVGPGAIGI VYYTEHDLR" gene complement(2578398..2579303) /locus_tag="Dhaf_2386" /db_xref="GeneID:7259355" CDS complement(2578398..2579303) /locus_tag="Dhaf_2386" /inference="protein motif:PFAM:PF08241" /note="PFAM: putative RNA methylase; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA4374 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002458851.1" /db_xref="GI:219668416" /db_xref="InterPro:IPR000241" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7259355" /translation="MEAVQLDSIEKNKSIETMNYFELLAWLGIGSSHPGGFPATVKNL EVMDVNDGDFILDAGCGSGLTACYLAKNKGCKIIGVDINSQMIEKARQRAEHEGVAHL VEFRVADVNRLPFPDDHFDWIMCESITVFLDKGKVYQEFFRVLKPEGRIADLEMALLY ELPPQLRAQMELCYGQGTDPLSFEEWNKTLTAAGFVDVEIKNPQALQNTNSNLVLNEL KNDWMLVKDLVQKVSSQPGLYRRLQQNANFMKYYKGYFGFGLVSGRKPTPPEPPKPPT FKERCVNKFKTIFKGNFFQRKSCSV" gene 2579424..2580005 /locus_tag="Dhaf_2387" /db_xref="GeneID:7259356" CDS 2579424..2580005 /locus_tag="Dhaf_2387" /inference="protein motif:PFAM:PF02660" /note="PFAM: protein of unknown function DUF205; KEGG: cyb:CYB_0321 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF205" /protein_id="YP_002458852.1" /db_xref="GI:219668417" /db_xref="InterPro:IPR003811" /db_xref="GeneID:7259356" /translation="MIDLFMILGAYLLGGMSTGYYLVKLWRQEDVRNQGSGATGATNA GRVLGKKGFLLTLMGDALKGALAPALSMHFNLSLTTLILCLIAGVAGHIWPLQLGLRG GKGVAPALGGILVVDPMLASAAAGVFLFVLALTRQFTLSGLAAILGAPILSLIMARPF EQSAGLAVLAIFILLAHRKNIREMLNKSSQRRR" gene 2580005..2581630 /locus_tag="Dhaf_2388" /db_xref="GeneID:7259357" CDS 2580005..2581630 /locus_tag="Dhaf_2388" /inference="protein motif:PFAM:PF00266" /note="PFAM: GCN5-related N-acetyltransferase; aminotransferase class V; KEGG: bca:BCE_2501 acetyltransferase" /codon_start=1 /transl_table=11 /product="aminotransferase class V" /protein_id="YP_002458853.1" /db_xref="GI:219668418" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR000192" /db_xref="GeneID:7259357" /translation="MASTDLSFKIAAAEEEFEQIHRLNYKTFVKEIPQHEVNSQERLV DPFHQENTYCIALHRGKLMGMLACRDKRPFSIDRKLADLDSYLPPYSSICEIRLLAVE KEVRGTRVLLGLMSLLFEHCQKKGYDLAVISGTVRQLKLYNHLGFKPFGPLVGTAAAS YQPMYMTREQMSQKLIELFKAFQSKDGRRDSVNFLPGPVKLRREVQEALGRPPRSHRS EEFLAVMARIKEQLAQWLKVHYVQILLGSGTLANDVVGAYLRTALGQKKGLVLSNGEF GNRLLDQARRAGLNFEDYSIPWGKGFDYEDIEKHLSKGEGSIQWLWAVHLETSTGVLN DLPRLKALCHRQRIPLAVDCVSSIGAVPVDLSGVYLATGVSGKALCSYPGLSFVFYNQ ALEGGRLPRYMDLGLYQQSEGVPFTQSSNLIYALEQALHYAAERELCINQRQGEWLRA KLQELGFQVLALPEDAAPNILTLVLPREVPSLECGELLEEEGYVLSYRSAYLFQRNWV QICLMGEYEPEQIYAFPEMLAECMKKCGLRKGK" gene 2581644..2582096 /gene="mscL" /locus_tag="Dhaf_2389" /db_xref="GeneID:7259358" CDS 2581644..2582096 /gene="mscL" /locus_tag="Dhaf_2389" /inference="protein motif:TFAM:TIGR00220" /note="forms homopentamer; channel that opens in response to pressure or hypoosmotic shock" /codon_start=1 /transl_table=11 /product="large-conductance mechanosensitive channel" /protein_id="YP_002458854.1" /db_xref="GI:219668419" /db_xref="InterPro:IPR001185" /db_xref="GeneID:7259358" /translation="MWKEFKEFAMKGNVIDLAVGVIIGGAFGKIVTSLVNDVIMPLVG LLLGQMDFSNAFITLGKGDFATIAEAQAAKVPTLNYGLFINNVVDFLIIAFTIFIVIK QINRFNRKKEVKEEVAEEKATKPCPYCYVEIHKEATRCPHCTSVLESP" gene complement(2582558..2583466) /locus_tag="Dhaf_2390" /db_xref="GeneID:7259359" CDS complement(2582558..2583466) /locus_tag="Dhaf_2390" /EC_number="3.2.1.17" /inference="protein motif:TFAM:TIGR00005" /note="KEGG: drm:Dred_1348 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase" /codon_start=1 /transl_table=11 /product="pseudouridine synthase, RluA family" /protein_id="YP_002458855.1" /db_xref="GI:219668420" /db_xref="InterPro:IPR006145" /db_xref="InterPro:IPR006224" /db_xref="InterPro:IPR006225" /db_xref="GeneID:7259359" /translation="MNHEQDLWTYTLQPQDDGVKYQDILYRRFHFSRKLIQHLKQGER VWVNGAFTFLTTRGKAGETLSVQLQPPEINSIPGENLPLEILYEDDYFIAINKPAGQV VHPTPRYPRGTIGNAVVGYWLAKGEARPFRPIHRIDRNTSGVVVIGKNQFAHQQMAWQ HAHGRIHKCYRGIVEGQVMEDQGTIKAPIALAPDSFIQRQISPEGSPAVTLYKVLERY QDASLLEFILETGRTHQIRVHCQHLGHPLLGDDLYGGNLARINRQALHSSIYEFNHPL TGELTTIQAPLPEDLQRLLRELARVE" gene 2583613..2584725 /locus_tag="Dhaf_2391" /db_xref="GeneID:7259360" CDS 2583613..2584725 /locus_tag="Dhaf_2391" /inference="similar to AA sequence:KEGG:Dred_3214" /note="KEGG: drm:Dred_3214 putative aminopeptidase" /codon_start=1 /transl_table=11 /product="putative aminopeptidase" /protein_id="YP_002458856.1" /db_xref="GI:219668421" /db_xref="InterPro:IPR000787" /db_xref="GeneID:7259360" /translation="MKDPRMEKLAQTIINYAIELKPEEKVLIEVNGLEIPLAQALVKY AYEAGGHPFLSVNNHTLLRELLKGMTEEQAQAMARWDLARMKEMDAFVGIRAGENANE LSDVPGDKMTIYQKEYLRTVMEQRVSHTKWVVMRYPNASMSQLANTSVEAFEDFYFDV CNLDYAKMSLAMDPLVQLMERTDKVRITGPGTDLTFSIKGMKGIKCDGHMNIPDGEVY TAPLRESVNGRISYNTAALYQGFTYENIVLEFKDGQIVKATANDTQRIEEIFNTDEGA RYIGEFAIGVNPYILHPMKDTLFDEKIDGSFHFTPGNCYDDCYNGNKSAIHWDLVCIQ RPEYGGGAIYFDDVLIRQDGRFVIPELQGLNPENLK" gene 2584757..2585638 /locus_tag="Dhaf_2392" /db_xref="GeneID:7259361" CDS 2584757..2585638 /locus_tag="Dhaf_2392" /inference="protein motif:PFAM:PF00781" /note="PFAM: diacylglycerol kinase catalytic region; KEGG: cbe:Cbei_0573 putative lipid kinase" /codon_start=1 /transl_table=11 /product="diacylglycerol kinase catalytic region" /protein_id="YP_002458857.1" /db_xref="GI:219668422" /db_xref="InterPro:IPR001206" /db_xref="InterPro:IPR005218" /db_xref="GeneID:7259361" /translation="MNRKRLRLIYNPYAGRRRLIQEMDTVIRVFQEGGYEVTLHRTES PTDIEHTSSLSTDVERLVIAGGDGSIHQAVNGLMKIPSSQRPALGILPVGTANDLAFG LRLPQKISEACQVIVQGSPFAMDLGQVNGRYFVNVFSAGLLTDVSPKVDVHVKNRLGQ LAYYLKGIETLPTYRPFKVEYEWEGTMISEEAMLILAVNGVSVGGFRQLIPKASLNDG KLDFVIVRHSGWPDTMRMLLHLVGGGKVSSDQILQFQTSELKVFTERPVFSDLDGEWG PESPWEIKMGPKLTVLC" gene 2585685..2587274 /locus_tag="Dhaf_2393" /db_xref="GeneID:7259362" CDS 2585685..2587274 /locus_tag="Dhaf_2393" /inference="protein motif:PFAM:PF01743" /note="PFAM: Polynucleotide adenylyltransferase region; KEGG: rxy:Rxyl_2803 polynucleotide adenylyltransferase region" /codon_start=1 /transl_table=11 /product="Polynucleotide adenylyltransferase region" /protein_id="YP_002458858.1" /db_xref="GI:219668423" /db_xref="InterPro:IPR002646" /db_xref="GeneID:7259362" /translation="MDLYQEELIKKISAITPFYIVGGTVRDHLLNRPGKDVDGIIPIP LEELEKHLREWGYHPLKIGAKHQTLSVFQQGQRMDINFFDGDLEADALRRDFTINAVF QDARTGELIDPLQGREDLENKLLRACGNPWERFREDPVRILRMVRFSVQYGMDIEEDT FRSAQSLLPELKHVASERTSEELGRILTLADPAAGIRLLNELGYLTLYLPELVRLQGL AQNRYHTKDAWEHTLQVLANTPPQPILRLAGLFHDLGKWEVASRECYVWGKCWAEDKG YYIGEYRILGRQLHRYHGDYVEVHGTRLDHYPQVIQVKRIRKDPSCRRGFEWVRDGKR HFLGHEKESGRLTRQILARFRLAMVLGKEGEGGEKELLWLIENHMSGTLSFIAELRGE GSALQLNQKVRQFVWEKGWDGRSYRLTRVDQLLELWRADFYGGKKREPKEEQIFEELL EKLHQTNKAVQKRHQELEWGELEKFAQEHKIKGREWGDFKESLRKTRVVSVDWIPLTT GFLEKEYKHFKGRNYAKRERE" gene 2587280..2587930 /locus_tag="Dhaf_2394" /db_xref="GeneID:7259363" CDS 2587280..2587930 /locus_tag="Dhaf_2394" /inference="protein motif:PFAM:PF01613" /note="PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: afu:AF0830 hypothetical protein" /codon_start=1 /transl_table=11 /product="flavin reductase domain protein FMN-binding" /protein_id="YP_002458859.1" /db_xref="GI:219668424" /db_xref="InterPro:IPR002563" /db_xref="InterPro:IPR004039" /db_xref="GeneID:7259363" /translation="MSTKWRCIVCGYIHEGEAPPESCPLCGAGPDQFERLEETEQPEV RVSGKVNQPGAAPALDDEQAIIQALYSISYGLFIITAHFDGLDNGQCANTCFQITAEP PRIAIGINKDNYTHELISQSGRFGVSVLNQQGHDYVRRFGYRSGREGSKFEDLPDVHR GQSGVLLLDNAVATLEAEVIGQLDAGTHTLFLGEVKSAEVRQKAEPMTYAYFRATK" gene 2587959..2588318 /locus_tag="Dhaf_2395" /db_xref="GeneID:7259364" CDS 2587959..2588318 /locus_tag="Dhaf_2395" /inference="similar to AA sequence:KEGG:BALH_0983" /note="KEGG: btl:BALH_0983 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458860.1" /db_xref="GI:219668425" /db_xref="GeneID:7259364" /translation="MKNKLITVSIMFIALMGIAGYGIYWAFFDVQRINGQDILTELAS PNNTYTVTAYLNNGGATTDYAVLCTVTNNQTSKSKNIYWNSPCQTAAVAWVDDVTVMI NEVELDVRHDVFDYRRQ" sig_peptide 2587959..2588018 /locus_tag="Dhaf_2395" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.769) with cleavage site probability 0.355 at residue 20" gene 2588472..2589566 /locus_tag="Dhaf_2396" /db_xref="GeneID:7259365" CDS 2588472..2589566 /locus_tag="Dhaf_2396" /inference="protein motif:PFAM:PF08331" /note="PFAM: domain of unknown function DUF1730; KEGG: amt:Amet_3636 hypothetical protein" /codon_start=1 /transl_table=11 /product="domain of unknown function DUF1730" /protein_id="YP_002458861.1" /db_xref="GI:219668426" /db_xref="InterPro:IPR013542" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259365" /translation="MDQKEGMLWKERLRHLALESGFAAVGFTHAEPVAGLYEFLAERS AQGYYTSFEEKELRKRVDPKAIWPACETVVVLAYPLVYSAPPQKGEGVLARSAVGEDY HSQVKRALHQLVNSLGEAGWRGEAPQIQVDTGPLNERALATRAGLGWLGKNQQLIIPG KGSFVALGLMLLDKALPPDEPLAGQCGNCTRCIRACPAQILGTRHFQANECLSYLTQS KEPLTERQRTALGKRIFGCDTCQEVCPHNGLRCDEEGKRSILNKIKEDRQGELRKAGQ EGKEPDVSGEKALPRGVDLWDILNLTKRQFNQQWRGTAAGWRGKGILQRNAYLALKNL RDPRLPSWEEERTGQDIPKLIQPYYSKADK" gene 2589749..2591353 /locus_tag="Dhaf_2397" /db_xref="GeneID:7259366" CDS 2589749..2591353 /locus_tag="Dhaf_2397" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: cpr:CPR_0485 ISCpe5, transposase" /codon_start=1 /transl_table=11 /product="transposase ISNCY family protein" /protein_id="YP_002458862.1" /db_xref="GI:219668427" /db_xref="InterPro:IPR002559" /db_xref="InterPro:IPR003006" /db_xref="GeneID:7259366" /translation="MNAHTLRPDYTSNGSVYQLVLPMDIGELIPADDSVRLLGSVLER MNYSKLRAAYSRLGRIETSPENLFKIVVYGYMNGTYSTRKLKQACQRDINFMYLWGRA PAPNHATIARFRSERLTDAMEDLFLQLVQLLSELGELSLCSVFIDGTKLEADVNRYSF VWKKSTQNHETKMQAKMKRELPKLAAELGLRFDVREKIRTKDLKKLRKHLYALKGEQT FVHGKGKRKSPLQRAIETVEGYLARQKNYDDYNHSFGERNSFSKTDRDATFMRMKEDH MKNGQLKPAYNAVLAVDAEYIVSALISQERSDVNTFIPMMKTLKSLGYTKPVADAGFE SEENYTWCEDNGQMAFIKPANHDRAKTRKYKSDIGKRENMPYDADSDAYICHAGHRLQ AAYEKKTKSKNDYPIVTTVYSCTQCEGCPHKAKCIKGSSPKPLEERSKNLYVSKTFQR QRQAMETRIQSDEGIVLRVNRSIQVEGAFGVLKQDMNFRRFLLRGQVKVQIELWLLAT AFNINKLHNKIQSGRCGSHLHRLKAA" gene 2591612..2592313 /locus_tag="Dhaf_2398" /db_xref="GeneID:7259367" CDS 2591612..2592313 /locus_tag="Dhaf_2398" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458863.1" /db_xref="GI:219668428" /db_xref="GeneID:7259367" /translation="MKRWIASIIVVAIIVTLTAWDNQSETTVNSNAQQNELPSGRGEI AEELSAIADFNHDGIKETVKVIAFDNGQYFELQIGNSEDPILWKTEAATAHMGWLALF LCQWDGADYLLRYSPYMSQGMCHYRYDLFFLDSSGNEVIVDSNAVYFDINFGSPVHLS FNPAEIAAFMHKVNAYLENSVVLLNTDGNLKFADESHLQDALWWLDDEEGFTDDKTAD LSERLAAYKKYCESR" sig_peptide 2591612..2591671 /locus_tag="Dhaf_2398" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.939 at residue 20" gene 2592497..2593123 /locus_tag="Dhaf_2399" /db_xref="GeneID:7259368" CDS 2592497..2593123 /locus_tag="Dhaf_2399" /inference="similar to AA sequence:KEGG:Ppro_2279" /note="KEGG: ppd:Ppro_2279 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458864.1" /db_xref="GI:219668429" /db_xref="GeneID:7259368" /translation="MKVPLSYQATEYDCGPTTMMNAISFLFEREEIPPDVIKYIMLYC LDVYNDKGEIGKKGTSTMAMMFISNWLGQFGKAKDFPIEIAYLTKENVFIGQTSKIVM ALQQGGVVVVRLYYGEEHYVLLTGIDNENEWIYLFDPYYREQPFEEEGIELIADAPMQ MNRKVPFSYFNQESSEIYALGPKDAREAIILYNKITQKTAESTIEYFI" gene 2593315..2593390 /locus_tag="Dhaf_R0028" /note="tRNA-Ala4" /db_xref="GeneID:7259369" tRNA 2593315..2593390 /locus_tag="Dhaf_R0028" /product="tRNA-Ala" /db_xref="GeneID:7259369" gene 2593457..2593654 /locus_tag="Dhaf_2400" /pseudo /db_xref="GeneID:7259370" gene 2593714..2594223 /locus_tag="Dhaf_2401" /db_xref="GeneID:7259371" CDS 2593714..2594223 /locus_tag="Dhaf_2401" /inference="similar to AA sequence:KEGG:Amet_1896" /note="KEGG: amt:Amet_1896 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458865.1" /db_xref="GI:219668430" /db_xref="GeneID:7259371" /translation="MKENILFQLDMCWQLYLYHMNDLKEAEALWVFNSSGLQVYKQEE GWCIDWPETESYESGPPSIAWTLWHIIYWWSTALDYNFDKGTLKKEDIPWPGSVEKAK ATINFLHDKWVSYLIDLSDADYLSKQYAKWPLSDRNFSDTALWLNGELMKNAAEIGYG RFLYRTCAK" gene 2594257..2594739 /locus_tag="Dhaf_2402" /db_xref="GeneID:7259372" CDS 2594257..2594739 /locus_tag="Dhaf_2402" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458866.1" /db_xref="GI:219668431" /db_xref="GeneID:7259372" /translation="MNQQEFHMLDDEKLIWIYVELIIRKVRGKAPATKSQIIMQLTNG QRALFLFQVLYGHANNGIPQFFAQISYLADRLDIWSALKSGMKYFNDIEMLSLIEKME TVYAYYEVAQRREDRILLDELEKLYKERIPFTLKRIGSLIRSNPAEFTVSFDLISYEK" gene complement(2594859..2596022) /locus_tag="Dhaf_2403" /db_xref="GeneID:7259373" CDS complement(2594859..2596022) /locus_tag="Dhaf_2403" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: pth:PTH_2849 aspartate/tyrosine/aromatic aminotransferase" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_002458867.1" /db_xref="GI:219668432" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7259373" /translation="MNQYLSPIAANLPPSGIRKFFDLVSTMKNVISLGVGEPDFVTPW TVRESGIFSLEQGQTMYTSNSGLLELRQALSWNMEKKLGLEYNPNDEILITVGASEAV DLAMRALLGPGDALLLTDPAYVSYGPCATLAGAEVHYVPTREEEDFRVRVEDLERVYT PNAKVLVLSYPNNPTGAIMTWEDYQPIAKFVQDHDLIVVADEIYSDLSYGGSHTAFAS LPNMRNRTLHISGFSKSYAMTGWRIGYVAGHHDFIQAMTRIHQYTMLCAPITAQLAAL EAVRSAEQAMQDMVATYDRRRRLMVHGFRKMGLSCFEPLGAFYTFPSIKATGLTSEEF ANELLQEEKVAVVPGTAFGPSGEGHIRCSYAYSTEQIQEALTRMERFVSKRIK" gene complement(2596019..2596516) /locus_tag="Dhaf_2404" /db_xref="GeneID:7259374" CDS complement(2596019..2596516) /locus_tag="Dhaf_2404" /inference="protein motif:PFAM:PF01037" /note="PFAM: regulatory protein AsnC/Lrp family; KEGG: csc:Csac_1961 AsnC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_002458868.1" /db_xref="GI:219668433" /db_xref="InterPro:IPR000485" /db_xref="GeneID:7259374" /translation="MLTHDERKLLELIANDFRLSLEELSIQTGLSEEFIEERLKQWEE EKIIAQYCPLINWERTGEPIVTALIDVKVLPQRGYGFDKIARRLQKFPEIKAVYLMSG GYDLSLLIEGKTMQEVALFVAEKLAPLEHVTDTTTHFILRRYKQNGVELLGEDDNPER LVISP" gene 2596789..2597256 /locus_tag="Dhaf_2405" /db_xref="GeneID:7259375" CDS 2596789..2597256 /locus_tag="Dhaf_2405" /inference="protein motif:PFAM:PF00588" /note="PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hmo:HM1_0104 RNA methyltransferase" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase (SpoU)" /protein_id="YP_002458869.1" /db_xref="GI:219668434" /db_xref="InterPro:IPR001537" /db_xref="GeneID:7259375" /translation="MAHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDK HLKRAGLDYWDMLDIHIYENYAEFEAKNPQGPRYLATTKAQRLHTDIHYQQGGYILFG KETKGLSPEILARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQWGNPGLI" gene 2597313..2598359 /locus_tag="Dhaf_2406" /db_xref="GeneID:7259376" CDS 2597313..2598359 /locus_tag="Dhaf_2406" /inference="protein motif:PFAM:PF00953" /note="PFAM: glycosyl transferase family 4; KEGG: dau:Daud_2092 glycosyl transferase, family 4" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 4" /protein_id="YP_002458870.1" /db_xref="GI:219668435" /db_xref="InterPro:IPR000715" /db_xref="InterPro:IPR003524" /db_xref="GeneID:7259376" /translation="MTFVLTFVIALIIAVIATPLSMKLGRRWGAIDYPGGRRVHKTPI PRIGGIAIYAAFWIAVIIMGIWDRQIWGLFFGSTIIVIVGVVDDIFDLRPMVKLVWQI IAAALLLFFGFSMSQISLPIIGMKLDFASIGLGWLGLVLAVFWIVGLVNTVNISDGLD GLAAGICFEAALLLCWSAIRINEVTEAHLTLALAGAALGFLFFNFHPARVFMGDSGSM FLGYIIGGISIMGLLKTATVLGLVFPLLVLGMPLTDMTFAIIRRKLRGHSIATADRGH LHHRLLDAGFSQPQAVLLLYAMSGCFGMAAVLGALGSWVWAAALLSADFALLVIILMR RTALLSVMSRKHSK" gene 2598402..2599103 /locus_tag="Dhaf_2407" /db_xref="GeneID:7259377" CDS 2598402..2599103 /locus_tag="Dhaf_2407" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: pth:PTH_1415 Zn-dependent hydrolase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002458871.1" /db_xref="GI:219668436" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7259377" /translation="MEIRFHGHACFEIIGEKGRILIDPFLKGNPAADVGPEHFTHLDG ILVSHGHSDHLGDAIELSQKTGAPLICVFELARLCARYGAKTHAMHIGGKHTFNFGTV RLTQALHGSVFEPPGEEESFTYAGMACGFLIQMDGKWIYHAGDTGLFGDMELIGRRHP LAAAMLPIGDNYTMGQEEAVYAATLLRPSYLIPMHYNTFPVIQQDPQEFIELLKRKFP ASKGEILAPGQSLII" gene 2599442..2599648 /locus_tag="Dhaf_2408" /db_xref="GeneID:7259378" CDS 2599442..2599648 /locus_tag="Dhaf_2408" /inference="similar to AA sequence:KEGG:Cphy_3422" /note="KEGG: cpy:Cphy_3422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458872.1" /db_xref="GI:219668437" /db_xref="InterPro:IPR001448" /db_xref="GeneID:7259378" /translation="MKGKHIKLKRTDPLEALKMEIAAELGLIDQVRLKGWHSLSAKEA GKIGGLMTQRIKSRSQQENENSLD" gene 2599785..2601098 /locus_tag="Dhaf_2409" /db_xref="GeneID:7259379" CDS 2599785..2601098 /locus_tag="Dhaf_2409" /inference="protein motif:PFAM:PF07085" /note="PFAM: regulatory protein GntR HTH; CBS domain containing protein; DRTGG domain protein; Helix-turn-helix type 11 domain protein; KEGG: bha:BH3175 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative signal transduction protein with CBS and DRTGG domains" /protein_id="YP_002458873.1" /db_xref="GI:219668438" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR010766" /db_xref="InterPro:IPR013196" /db_xref="GeneID:7259379" /translation="MSQTKHQQILSFIEGLAVGSKVSVRFIAKELDVSEGTAYRAIKE AENKGYVRSIPKVGTIRIEGAKERRIEDLTLREVSQIAEGIVLCGFESLDNSPNKFLI AAMELDAMERYLEDNSLCIVGNRHDAQLLALQKGSPLLITGGFEPQEDIIQLAKANHL AIIQTPYDTFAVTTMINRALYDRLIEKELILVEDIMVKDVNYLTTRATVGDWHELSQQ TTHSRFPVVDEENIVVGMITAIDVAGAEMNTSVVEVMNPNPYVVGREDSVTHISRIML WEGWEIAAVVDQGVLIGIISLQDVLEAYQQIQKQPQFGETVDNLILSGFRYVEDPEYL TIEGEITRFMINEFGSASPGVLVTLMNMAGYIALRKQYRLDAITENFTFYQLQPIPVG TEVRITVKLLLVAKKHCNIEIDVYSNNQLLAKALMTARMGDKKVS" gene 2601250..2604822 /locus_tag="Dhaf_2410" /db_xref="GeneID:7259380" CDS 2601250..2604822 /locus_tag="Dhaf_2410" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00594" /note="KEGG: pth:PTH_2220 DNA polymerase III DnaE; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein" /codon_start=1 /transl_table=11 /product="DNA polymerase III, alpha subunit" /protein_id="YP_002458874.1" /db_xref="GI:219668439" /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004805" /db_xref="InterPro:IPR011708" /db_xref="GeneID:7259380" /translation="MGFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVM YGIIDFYKACKKAGIKPIIGCEVYVAPHRRTEKVPGRDDNNRHLVLLAENEEGYKNLI KLVSMAHIEGFYYKPRVDKDILRRHSRGLIALSACLAGEVSEYLLNNQLETAVESALE YEEIFGKGNFFLEVQDHGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQD VLICIQTGKNLTDASRMSFSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFK FGDNYLPVFEVPEGYTLDTYLRKKCYEAFPLFYPNQRTEEKERLDYELGVIAQTGFSG YFLIVADFCQYARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERI SMPDIDIDFDPDGRERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLAR VDKVAKAIPSDLGMTLEKALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAA GVVIAKDALDTYIPLQRTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQ IEGNRGEVLDLQSLPLDDKATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIA VVALFRPGPMEQIPEFIRRKHGGNVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAG YSLGRADLLRRAMGKKKKEIMEEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIF DLMAKFAEYGFNKGHATAYAVISYQTAYLKANYPLEFNAALISTVMSSADKVSFYIHE ARQSGIEILPPDVQYSQVGFSIEGRGIRFGLGAIRNVGVNVVEKIIEARQEGLFDSLY DFCIRVDAKVLNKRVLESLLKAGAFSLLCKRAQGLLALDSILEIAQQRQRDKESGQIS LFDFGDDLDEGIELPDVEEYSPRELLTMEKEYLGLYLSGHPLESVLPKLKNAVSEDIL TCLEGDEEKKVILGGIVTGYRTTVTKRGEMMASFVLEDLTGTIDVLVFPRIFAQSARL TEDQVVVVEGRYNIRDDERKIFAERITDLENGAERTKPIGYKDYEKTQTREKAQTRTQ PPTQPSTQSPPKLSAVPSAKPGAVPARKLYLRFPYEGTPLLEEALPILRHYSGTHPVL FYFEQDKKLIQGNRELWVNDLEELVQALSNILGESNVVWKVNAM" gene 2604849..2605340 /gene="coaD" /locus_tag="Dhaf_2411" /db_xref="GeneID:7259381" CDS 2604849..2605340 /gene="coaD" /locus_tag="Dhaf_2411" /EC_number="2.7.7.3" /inference="protein motif:TFAM:TIGR01510" /note="Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA" /codon_start=1 /transl_table=11 /product="phosphopantetheine adenylyltransferase" /protein_id="YP_002458875.1" /db_xref="GI:219668440" /db_xref="InterPro:IPR001980" /db_xref="InterPro:IPR004820" /db_xref="InterPro:IPR004821" /db_xref="GeneID:7259381" /translation="MRIAIYPGTFDPVTNGHLDILKRATEFFDEVIVAVAVDSNKTTL FSLEERIQLLETAAEELSQVKIRGFEGLTVEFARQCGANAIIRGLRAMQDFEYEFQLA LMNKKLAADIETIFLMTQSEFSFISSSSIKWAASLKGNISEFVPPHVERAIYRKYHPE IDD" gene 2605480..2605680 /locus_tag="Dhaf_2412" /db_xref="GeneID:7259382" CDS 2605480..2605680 /locus_tag="Dhaf_2412" /inference="similar to AA sequence:KEGG:HM1_0082" /note="KEGG: hmo:HM1_0082 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458876.1" /db_xref="GI:219668441" /db_xref="GeneID:7259382" /translation="MWTVIYIAPNKAIAEKYKKALSEEGMLVQLRPIGSAHLGDHASV EILVPESEAEEAHEIITSYMGS" gene 2605683..2606597 /locus_tag="Dhaf_2413" /db_xref="GeneID:7259383" CDS 2605683..2606597 /locus_tag="Dhaf_2413" /inference="protein motif:TFAM:TIGR00515" /note="TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: drm:Dred_2315 acetyl-CoA carboxylase, carboxyl transferase, beta subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, carboxyl transferase, beta subunit" /protein_id="YP_002458877.1" /db_xref="GI:219668442" /db_xref="InterPro:IPR000438" /db_xref="InterPro:IPR011762" /db_xref="GeneID:7259383" /translation="MLKDIFRKKRKYATLSSLPPKNSEGGLAYFDEPSPEQESTRKEL PDGLWVKCPKCGEALFNKDLVENQRVCLTCSYHFRIPARERLEHLVDPGSFAEWDREL QTTNPLSFPDYEEKLAEAYQKSDVSESVLTGQASIEGMPVVLAFNEGNFMMGSMGSVT GEKITRAIERAIELRCPVIIFSTSGGARMQEGILSLYQMAKTSAALGRLAEEGLLYIS VLTDPTFGGVTASYASLGDIHIAEPGALIGFTGPRVIKQTMRKELPEGAQTAEFNQSH GQIDCVVERAEMRKVLGRLLRYHQEGAV" gene 2606597..2607556 /locus_tag="Dhaf_2414" /db_xref="GeneID:7259384" CDS 2606597..2607556 /locus_tag="Dhaf_2414" /EC_number="6.4.1.2" /inference="protein motif:TFAM:TIGR00513" /note="catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase carboxyltransferase subunit alpha" /protein_id="YP_002458878.1" /db_xref="GI:219668443" /db_xref="InterPro:IPR001095" /db_xref="InterPro:IPR011763" /db_xref="GeneID:7259384" /translation="MAQHFDFEKPILELEQKIAELQEFSKEKDINLSPEISKLMRRLV RLRKEIYGNLEPWQKVQIARHMERPNFYDYAPLLFEDFMEFKGDRLFADDKAIVGGIA IFQGIPVTVVSHIKGRGTKENIQRNFGMPHPEGYRKALRLMDQAEKFHRPILTFIDTP GAACDLEAEERGQGEAIARCLQAMAGYSVPIICTVIGEGGSGGALALGVGNKVLLLEN SFYSVIAPESCASILWKDPGKAKEAASALKFTAQDLLELGIADGIIKEPLGGAHRSVE RTAEEMKKTIAEALAELRELPPDELRTMRYEKLMNYGEFEEKA" gene 2607625..2607711 /locus_tag="Dhaf_R0029" /note="tRNA-Leu2" /db_xref="GeneID:7259385" tRNA 2607625..2607711 /locus_tag="Dhaf_R0029" /product="tRNA-Leu" /db_xref="GeneID:7259385" gene complement(2608024..2608440) /locus_tag="Dhaf_2415" /db_xref="GeneID:7259386" CDS complement(2608024..2608440) /locus_tag="Dhaf_2415" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458879.1" /db_xref="GI:219668444" /db_xref="GeneID:7259386" /translation="MPVFGSRDWYGNLACNFMYVQGISDFDDNSSVRLTQDDAEQRLS ITLRIGKDKTPKYLFYDQIVSIEIKKKHGTRNRDFSISYHPANNPDDVKILLFEIVDA SLHWRKFIGALKSKIPQPPEPEQLDSQPEPEVSQYL" gene 2608594..2608794 /locus_tag="Dhaf_2416" /db_xref="GeneID:7259387" CDS 2608594..2608794 /locus_tag="Dhaf_2416" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: nth:Nther_0281 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458880.1" /db_xref="GI:219668445" /db_xref="GeneID:7259387" /translation="MIYPAPARFQHKDKVINVEQILRVSEEKLAGNPMKIYSCQSDID GKLRRYDLKFELQTCKWFLYRM" gene 2609497..2610165 /locus_tag="Dhaf_2417" /db_xref="GeneID:7259388" CDS 2609497..2610165 /locus_tag="Dhaf_2417" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458881.1" /db_xref="GI:219668446" /db_xref="GeneID:7259388" /translation="MVKDFFKELSRVLSKHDIETAPPERNALPILINGRSACHVEPSG YMCIFPGDIRSPEASELYHKVAPFSMEVREYLTAIERAPLLEAEALDEDFRLLAEFNG TVLAGRETEYGYMFVTWQRDYKGTGVEDGEYYLDGYAAAKADFAIRSGLVEKQRLFSD AQLLDIYQGINDTFDAGYDLTPTDQKNLIGIQSQIEGLLPDIREQIASLQRVNMEAAQ EQSM" gene 2610508..2611692 /locus_tag="Dhaf_2418" /db_xref="GeneID:7259389" CDS 2610508..2611692 /locus_tag="Dhaf_2418" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_0293 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458882.1" /db_xref="GI:219668447" /db_xref="GeneID:7259389" /translation="MLKLQLRKHDAPSYRTTVVEFPAVEPDLQKEMEKIGVGITTEKL CLVDSVQGDNGSLQALAGTLVNADEVQYLAKRMDSFDKNELHTFYAVAEHEKLSEVKD LINLTFNLHCYALISEFSDVSAIGRRYELCRQTALSLNELESTTYASIGRRLIGHYKG AVTSYGVLYPTGNTPEQAYNGEQFPEYHWRDDAVATVTLEYGESHSNAKHEYLYFPCW EIEIEKAVNRLGAYTPCDCRTDLSFEGMSGELYQLFTEEHPLSAHLHTLNSLARCYTG FDEQTRNAFHAVLEMIQPKTPKEAVLIADNFYEFTVVPGIKTPMEYGRYMIIDSGRYE FDANLEEYIDFKRYGEHRIQIENGSFTEYGYIAYWGCTPAVEELLRQEDSQSMGIGGM QL" gene 2611689..2612291 /locus_tag="Dhaf_2419" /db_xref="GeneID:7259390" CDS 2611689..2612291 /locus_tag="Dhaf_2419" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_0293 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458883.1" /db_xref="GI:219668448" /db_xref="GeneID:7259390" /translation="MITLHLTRADDYAGVYLPLPATPAEIGEAWAELDHISGDVASTR IVGAISNVWGIGQYLKNADVNTSGQFEKLNRIAELTGSLDRHQCHIFEGALNAESVNS LDDVIAIGERLEQYLLLSGVNTDRELGAYLVETGVMPFEDSVQPYLDYAKIGIEYYSN HGGAYATGGYVLRRESAEQALLDIADSSQNRQTPGGMEMG" gene 2612295..2612906 /locus_tag="Dhaf_2420" /db_xref="GeneID:7259391" CDS 2612295..2612906 /locus_tag="Dhaf_2420" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lpl:lp_0307 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458884.1" /db_xref="GI:219668449" /db_xref="GeneID:7259391" /translation="METDLTKRIKALTHHYRPKLNTEKRTIRWADEVWTPTGIVDSIR FEDYYEDEEYLCRLLDGERFSENERLTSAFMHQPGKCFRDGSTDKNEQKCHGCVLRCH NWKVGMMVTCFEVKITYSDFRSANGHNFHGNENYYCVPKALAPKIASEIPDDIGILVY FEGERQYGLRQLKPSGWREVTDPTKVHLLYNAMKKWCDGAVFV" gene 2613026..2613397 /locus_tag="Dhaf_2421" /db_xref="GeneID:7259392" CDS 2613026..2613397 /locus_tag="Dhaf_2421" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458885.1" /db_xref="GI:219668450" /db_xref="GeneID:7259392" /translation="MKDKEIAEMFERHNLVRGYVYPYEGYRSEYWFENSLSNIANFIM QHRDAREITLTDTMDRLILNTIGEFIDRCPDQAFLQQLLPHLIPMQLGEAEPQEFPCA TDEEAEAYFDKQDSMEMDLGM" gene 2613428..2614231 /locus_tag="Dhaf_2422" /db_xref="GeneID:7259393" CDS 2613428..2614231 /locus_tag="Dhaf_2422" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hmo:HM1_0130 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458886.1" /db_xref="GI:219668451" /db_xref="GeneID:7259393" /translation="MSVNAREDEMQYVEIFERPALFTNWLIDRGTVPPGWYCYDLSSS ARNPGIPVRLQDSASANHAGTILSPTALKKPDTAFRRMDSKLNFFGECMTLSKFCDVH GLDFPADHRKYAPRPASPEEAGIFYALTPEQDAELGAIGHVRMDFGASGNEFWSTWWP RGDESLNSPEFKAELTELVNELRETGPLKDLSAMHSYCAGHRGEIGGGWRQNYGYIIE TERYRYCLRCSPGQGDYHAYLTAFDLRVQEMNMGEQPEQGSQMGGMQLG" gene 2614224..2615708 /locus_tag="Dhaf_2423" /db_xref="GeneID:7259394" CDS 2614224..2615708 /locus_tag="Dhaf_2423" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_0293 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458887.1" /db_xref="GI:219668452" /db_xref="GeneID:7259394" /translation="MDEKLRNGLPQRCMFVNGDGEIRIIEYGNKGFIRSDLNTENRKA NHIIVKDYNEKHGITSEQVKMMHTGALLGWDTLYASHPSQRLESSMKNGHIFEVEISR PGSLGAETATTLALPAIPYEILDALDKARITDDRVIYSMEILSCELDYLPQFISPSVN LYELNHLAGRLSSLSQWELDCFEGMVMMDTLQTQYAPIDIDRLINMTHSMEHCQIAYE AHNDQSLGKFYADNDFVPKLENLSDEVYACLDFGKIGKEMREGEGGVFTPHGYVVQNG EIAKTYQNGEAIPLEKPDYTVLLRITKGHFNDPEYDNDLVALLKLPANDKDIYRAVEA VEAASPEECAFSATDCIVPYLTEKISDELYASEGDRYGAVNELAQKLRGIAEENSLPT YKAMLETAPQDLSLEEAIDLAEQVPNFRLLREIPSPLEYAQAELLKHDIPLKDELINN RNLYNYGQKLMESQGAVNTDYGILLSEDGMTVDEVDENGVKKTK" gene complement(2615949..2617220) /locus_tag="Dhaf_2424" /db_xref="GeneID:7259395" CDS complement(2615949..2617220) /locus_tag="Dhaf_2424" /inference="similar to AA sequence:KEGG:Cthe_2545" /note="KEGG: cth:Cthe_2545 signal transduction histidine kinase regulating citrate/malate metabolism" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase regulating citrate/malate metabolism" /protein_id="YP_002458888.1" /db_xref="GI:219668453" /db_xref="GeneID:7259395" /translation="MAVIVIGLLRFGVSLVFGLTVSVLFAGIEPTKKNRLVTGLLCVI FLFVQTASYWLLGLDLTSKLYPLIIHLPLIVIFTLYYKRPWLISAVSVLSGYLCCQAP RWFGFLAGAALDSRLADHLFYIAFVFLAYYFLKRYVAGSVRQLMEKSTKSCLFLGGVP LFYYLFDYVTAIYTDVLYSGTEWAVQFMPSTISVFYFVFVILYYAETQKQASLQREKD MLDAQFRLAQTEFASLRQLQQNAASYRHDMRHHFSLLQGLASREHIEGIKEYLQTAQS DMDAITPTRFCGNETVNLILSAFATKAKQGSIMLTVDAKLPDLLPFSDTELCSLLSNA LENAIHACEQIPDSNKRIIRLRMYSKNNKLCIDLHNSFQAEPIFQQGFPVSKEQGHGF GTKSIAHIVEKHGGVFQFSVKDGWFIFQATA" sig_peptide complement(2615949..2616029) /locus_tag="Dhaf_2424" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.677) with cleavage site probability 0.675 at residue 27" gene complement(2617222..2617950) /locus_tag="Dhaf_2425" /db_xref="GeneID:7259396" CDS complement(2617222..2617950) /locus_tag="Dhaf_2425" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cpy:Cphy_3118 LytTR family two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LytTR family" /protein_id="YP_002458889.1" /db_xref="GI:219668454" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR007492" /db_xref="GeneID:7259396" /translation="MLHIAVCDDNIDELSNMVQLIDLYRTSRHLNCEHAVFPNGFELI SALEKGKRFDIYCLDIMMPGFTGIDAAKEIRTFDKTAPILFFTSSPEFALESYSVKAI NYVLKPISKEKLFFTFDELMEQIKLKKDEDAVIIKGNEGIQKILISNLIFAEVIGRNV LYHLRSGKVIECTEAFSPVCDNLMKYGCFMKPHRSYLVNMQYVDTIENHQITLQTLSS VPVAQGKAKEMKQQYLNYQMEGGA" gene complement(2617971..2618261) /locus_tag="Dhaf_2426" /db_xref="GeneID:7259397" CDS complement(2617971..2618261) /locus_tag="Dhaf_2426" /inference="protein motif:COG:COG3655" /note="KEGG: cth:Cthe_1655 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, XRE family" /protein_id="YP_002458890.1" /db_xref="GI:219668455" /db_xref="GeneID:7259397" /translation="MGVSYNKLFKLMIDRKIRKGELCKAAGISSGSLLKISKDENIYV DILVRICSVLGCDFGDIMEYVPDENAVIQSEPGNRQLPDLQEREPARVSEEV" gene 2618559..2620406 /locus_tag="Dhaf_2427" /db_xref="GeneID:7259398" CDS 2618559..2620406 /locus_tag="Dhaf_2427" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sth:STH2580 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458891.1" /db_xref="GI:219668456" /db_xref="GeneID:7259398" /translation="MKKQFMGILLTLCMALTLLPTTAFAADASSQNLYQVGSNPVYRL SPNGEIIGEFPSGTIVEVIEIKGDWARVRYEGQEYYMWAPRLTKVGAGTTSSNLAEKP FAPPDGWYTIETPNPNGKSTSGHIIIGNGGAVVDLASAGFEYYWQRYIYVDNIGNDQV TLKTLDGKYLGISDPIKDGTRVRAVDSPYVWNAYTTTKLESAQANPSSAFISFRPPQN TNMIVNVSGWKLNEEGAHIILWSSKLGTVDGNAKLSWGEVEDPAKTLTMRDLVEILNT HVMERLYGDFSLSPSQGIFPPASDTPYKNYYWDGSGPDPYEGLKDAAGNLNYDYADVP NWVGRLRMWGVLPGGDYNGTTEITYGQFTGYLKKLMAYGRQNAINWGKVEKFYNPRET FTDDIIKKFGFGDSRAESKITFLQAMLICDATVQWWYASAEVDGNDAYVPYKKGDLPF PYKYASIVNQSSQAATPAPAPTPTNTVTATPTNTKFMLNGAEVALPAYSISGNNYVKL RDVGALLKTRFDVRFEDGKAKLYNHAAYTKTSGELAAIGKDSKNATLSSTAFVWGDTG AAVTGLTAYTIGGNNYIKLRDIAKLFDFDVDWRDGKAWIEPDVSPYTED" sig_peptide 2618559..2618636 /locus_tag="Dhaf_2427" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 26" gene 2620411..2622099 /locus_tag="Dhaf_2428" /db_xref="GeneID:7259399" CDS 2620411..2622099 /locus_tag="Dhaf_2428" /inference="protein motif:PFAM:PF08239" /note="PFAM: SH3 type 3 domain protein; KEGG: cth:Cthe_1524 hypothetical protein" /codon_start=1 /transl_table=11 /product="SH3 type 3 domain protein" /protein_id="YP_002458892.1" /db_xref="GI:219668457" /db_xref="InterPro:IPR013247" /db_xref="GeneID:7259399" /translation="MKKRLTSILLTFCMVITLMPATAFAADTAPPKQNLYQVGSNPVY RSSPDGDTIGKIPAGTILEVIEIKGDWAKVRYEGKEYYMWAARLIKVAPAQTYQDGWY PISIFGGGLGVDFDGGAVLVNYMNGTIVVNRNFYLKNVGNGQITLRMLDGTYLGISGE IKNGVQLTAVKDPYPWIVYSHPDSSEFSLRPPANTKMAVNVSGSGTAVGTPIILWEHS DTPDNAWLMLQVLVAEDWTKTITRGYMAELLARIMSNGGGESNIKYYPPGPGGNQGTM FQGIPENTAPMRRWAVGYLRYWGVFPVEKFDEDVEITYGEFTTYLIKLMDYYNNSLGP GVAKPFVLTKDTIKKFALENFGQNTDPNAIMTIWHGQMLSDATVRWMQAINSNKTQGL PFPFPYPDGKTRTKTPSPAPSTPTVPTGITATPTNTKFMLNGAEVALPAYSIGGNNYV KLRDVGALLKTRFDVRFEDGKAKLYNHAAYTKTSGELAAIDKNSKNATPSTTAFVWGD TGAAVTGLAAYTIGGNNYIKLRDIAKLFDFDVDWLDWRDGKAWIEPDVSPYTED" sig_peptide 2620411..2620488 /locus_tag="Dhaf_2428" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" gene 2622259..2622681 /locus_tag="Dhaf_2429" /db_xref="GeneID:7259400" CDS 2622259..2622681 /locus_tag="Dhaf_2429" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cau:Caur_3237 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458893.1" /db_xref="GI:219668458" /db_xref="GeneID:7259400" /translation="MKKLLVLMMALAMTLSLAACGGNAEPPASTPESTPATAERKDNV TPEQAAAIVDIMAKMGPLYEEAAAAATANGWDQDELAVQELNAVYAIMDSARVGLGEL DGYGDTSTEDIDTVIGQYQAMLDEMPNIIAKYSEPYGN" sig_peptide 2622259..2622333 /locus_tag="Dhaf_2429" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.549 at residue 25" gene 2622783..2623337 /locus_tag="Dhaf_2430" /db_xref="GeneID:7259401" CDS 2622783..2623337 /locus_tag="Dhaf_2430" /inference="protein motif:PFAM:PF04011" /note="PFAM: LemA family protein; KEGG: cpo:COPRO5265_0408 LemA family protein" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_002458894.1" /db_xref="GI:219668459" /db_xref="InterPro:IPR007156" /db_xref="GeneID:7259401" /translation="MLPTFITIAVIIAVIVLWIISTQRRLVVLDENISNAMSQIGVQL SSRFDALTALLDLTKGYARHESETLIETIKSRRSVITAKSTPDEVMRQEGVISEALGR ISMVTEQYPDLKANQNYIKTMDAVQTFENMVRTSRLIYNDSVTKLNREIRMFPVSMVA GMLGFGQRDYLVEQADKADMPSMK" gene 2623346..2625031 /locus_tag="Dhaf_2431" /db_xref="GeneID:7259402" CDS 2623346..2625031 /locus_tag="Dhaf_2431" /inference="protein motif:PFAM:PF09972" /note="PFAM: ribosomal protein S14; KEGG: cpy:Cphy_1455 hypothetical protein" /codon_start=1 /transl_table=11 /product="ribosomal protein S14" /protein_id="YP_002458895.1" /db_xref="GI:219668460" /db_xref="InterPro:IPR001209" /db_xref="GeneID:7259402" /translation="MRKKVSGLILCFALLFALPLPAFAANQVNTMDIQAVIYEDGSMY VTQVWEGDFDEGTESYIPMNAPDYLTASQLTVSDQNGSYETVSDWNIDWSFEEKARKC GIHDTDSGYEICFGISRYGQNRYAIEYKLDNAVGGYSDRDGVNFRFVNDGMNTTPTDV KVEIRLADGTPITDETADIWGFGYDGQVEFSDGAILAYTESPIAPENHVTVLFSLEKG ILSPSRQEQGSFEEVKETAFSGSDYDDTGEEVSTFEAIVTMLLSIGLPIGLMIWFFRM KKKRAEKKRQRFAERFGYFRDIPNDGNLSATYALGRLFDVCEDGAILSTGMLRLIQLG CLSPVETQQVGLMGQTRETVSLRLVGSNHSSMNEYDEYLYTVLESAAGSDSTLQAKEL EHFASQNDKLLRAYIQKCESAGRAWLNQKICLKRWDMPAKLTDLTPTGEQELGELMGL KRYLTDFSLIAERGVKEMPIWRELLTYAMLFGIADQVAEQMKELYPQISAELTDYSGS MAAAYSYHYLLYSNMKQAEQRREQEKRSGGGGGFASLGGGGGSIGGGSGGGTR" sig_peptide 2623346..2623420 /locus_tag="Dhaf_2431" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 25" gene 2625056..2625964 /locus_tag="Dhaf_2432" /db_xref="GeneID:7259403" CDS 2625056..2625964 /locus_tag="Dhaf_2432" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bha:BH0009 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458896.1" /db_xref="GI:219668461" /db_xref="GeneID:7259403" /translation="MGLFSKKPPCPICGGKIPLILPSKIEGEYICNDCYSKIDMGADK ESNLTMQGFREYLTFYDQNQILKGQFVVSERIDFGLWDTKIIFDYQNKLFCMSKNPDK TVFEGRQLKSFTIREDSTPLFEGSAAGIRRYTSTVTERAMAMAPQIAQIAANKRMART LDRLDDGKVNNSAPVQYFDIPEPFQAFHVELHFDHPYWTVLKCDMDGPRFNNTLPDVN NYLRSYQQSIEEIEKLVAALRTVAFSGVAEQSVGPGMMGMGALHASMAPPADAIEEIK RYKALMEDGVISQQEFEAKKKQLLGI" gene 2626000..2626179 /locus_tag="Dhaf_2433" /db_xref="GeneID:7259404" CDS 2626000..2626179 /locus_tag="Dhaf_2433" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458897.1" /db_xref="GI:219668462" /db_xref="GeneID:7259404" /translation="MTYACEDCGFLFRRVGAVKECPSCEKPHIRPATEEEIGMLEKLL EQGKTSLEIKEGQTL" gene 2626176..2632799 /locus_tag="Dhaf_2434" /db_xref="GeneID:7259405" CDS 2626176..2632799 /locus_tag="Dhaf_2434" /inference="protein motif:TFAM:TIGR02543" /note="TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; Peptidoglycan-binding LysM; Immunoglobulin I-set domain protein; Listeria/Bacterioides repeat protein; KEGG: hmo:HM1_0138 hypothetical protein" /codon_start=1 /transl_table=11 /product="cell wall/surface repeat protein" /protein_id="YP_002458898.1" /db_xref="GI:219668463" /db_xref="InterPro:IPR000601" /db_xref="InterPro:IPR001119" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR006626" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013378" /db_xref="GeneID:7259405" /translation="MNKRLLSMFLTLCMIVSMLPVSAMAEEIHTTIGGSGEIISFAPL TETKKAVSLGTSIEDLELPETLTATVRTAMPADENSTQDSGSPETATPTTTTEPKWKE TTGDIPVEWNSSDYDPNIEGEYAFTPVIVGYTVSAPLPELTVAVGEPVLDMRGIGLLS IEDTDVAAIDDTGYATLQEAVNAVAEGQTIKLLDDINLTATVETLSSSTKSFTLDLNG KTLRSSDKLNLLHRGSGTLTVTDSKGGGKIEHGSIWQAISNLNYGTIIVSDTEIITTS GDGRGIVNVAGTLVVSRSKVSGGTGIENSSGTVTISNSTITGTSSSGNAYGIYSIQKC TINISGSTISGEGNGSGLYGIRNTNGGTVNVSGSPSVIKGKSYAMHGVTPTLNGVIAT ASTDYDGGSAVAYDAGSIASYKYLKFEPAPVVNYDLWVGGVRVTSDNKDGITGAGITG TVIYDSDTNTLTLNGATINGAYEGTWIDSTTSAYYGIYADTALKIEMVGDSTIMGKNL ANIASIGIYTGSTLNLSGSGSLYVSGGTGKFSVGIYSGGSITIEGGRVTAVGAAATQT SIGIASNGNITIHDGEVEALANTGASISWGMMATNAITINDGEVTASGKTGLHTNAAA GSVTISDGMVTANGSEVGIAGAVTVTGGTVTVKSDAKALNGSLTTSGYEGCIVTAGAN KNGDGAGTYNAANLATYKYIKVESASTPPVLTEVGDRTALQSAITGATVDLDLKLSDS YIDTVGKLTIPGTCSYNITIDLNGRTLAGASVSAIEYLGSGTLTITDSAGGGMVTSNA MGTIYANGAGTVNLSGGTVRTAGSTESVAIWVGGNKTLNITSGTVIGIGYANYAIYSK NGTVNISGGTVSATGINGKAICGETGSAGQLNISGGTVSATWTGGIAIDHQNTTIQTG TTNIIIQGSSRAMTSPPTLVGGVQDGASTNYDGSGSVAYNAANIATYKYLKFGLDVIS PVLSSGSVNRTSDTAATIDFTTDKAGTAYYLVVNSGVSAPTSMAVKAGTSLDSVSGTV TDKAATLTAGAKDIYVVVEDSAGNISTPLKISVAAYVAPDTTAPTVTSVTVPTNGTYL PGTYLDFTVNFSESVAVTGSPYISLTIGSNSRNAIYQSGSGTTALVFRYTVQADDSDS DGITVGVSLNASGGTIRDAAGNNANLALNSVGSTGGVLVNPPAPSITSQPSPQTVDEG QTATFSVTATGVGLSYRWQVNTGSGVSNISNGGVYSGAGTSTLTITGATAGMNGYQYR AVVEGTYLPAATSNWATLTVNAAPTYTITASPTSKDFGSLTIGYTAPAAQTVTITNTG NSSVTLTQPTSTNYTIGALSTTTLAANGTATFTITPKTGLAIGNHDETLTVSTDHGTN ATVGLSFEVTTAPTYTIIADPVTKDFGSLTIGYSAPAAQTVTITNTGNSSVMLTQPTS TNYTIGALSTTTLAANGTATFTITPKTGLAIGNHDETLTVSTDHGTNATVGLSFEVTT APTYTITADPVTKDFGSLTIGYSAPAAQTVTITNTGNSSVMLTQPTSTNYTIGTLSTT TLAANGTATFTVAPKAGLAVGNYNETLTVSTDHGTNATVELSFEVTAVPYTVTFNPNG GTVSEASRSVASGTAVGALPTPTRSGSYSFDGWYTAASGGTQISASTTVSANVTYYAH WTYTGGGGSGSGGGSSSNDNSSPVIVTPPAPDKPNSPTQGEIKVPGTVDGKGNVTVSI IDKTVTDAFNKALAEAKKNGTEQNGITVVLRVDTGNKTGSNVTVNLPKAVQDTIIAKK IVNTIVVVDNPDIRVGMDLATVQEINKQAKSDVNITATRTNSGKLTGEAKKAIGSRPV FDLKVNYGNGKAVSSFGAGSVSVTIPYTLGANEKAGNVQAVYVDSKGKVHWLVNSVYD SVEKVLRFSTDHFSIYGIGYKQANTAFTDIAGHWAKEDIEFVASRGLFGGTSETKFSP NTAMTRGMFVTALGRLANADVSGYAKSSFSDVQDDAYYMGYIEWASKNNIVNGVGNGK FAPDQSITREQMAVIMSNYAKTIGYTLPKVHIENIFTDNAKISTYAKEAVKQMQMAGV ISGKNGNLYDPQGTATRAEVSAVLRRFVELAISSDTAQGWSMNDSGKWMYFKDGKPLT GKQDIDGATYTFDQYGVTADVPKNLRYTTYTVQKGDSFWSISRKLGCPMSELERLNNK SRFSLILPGEVLRVPEK" sig_peptide 2626176..2626253 /locus_tag="Dhaf_2434" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.971 at residue 26" gene 2633316..2633735 /locus_tag="Dhaf_2435" /db_xref="GeneID:7259406" CDS 2633316..2633735 /locus_tag="Dhaf_2435" /inference="protein motif:PFAM:PF08281" /note="PFAM: Sigma-70 region 4 type 2; KEGG: hmo:HM1_0136 hypothetical protein" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002458899.1" /db_xref="GI:219668464" /db_xref="InterPro:IPR013249" /db_xref="GeneID:7259406" /translation="MAEKKEYRIKVQGQLVPVSEEVYLTYHRMKRREIYLEERDTTNG VFYYSALDTEGTNGEDVIPDLVSPRVEDAAVDKLLAEKLHRCLAQLTKEEQELIFTLF FQNKSERQLAAETGIPQKTINDRRHRILVKLKKLMKI" gene 2634368..2634754 /locus_tag="Dhaf_2436" /db_xref="GeneID:7259407" CDS 2634368..2634754 /locus_tag="Dhaf_2436" /inference="protein motif:PFAM:PF02452" /note="PFAM: PemK family protein; KEGG: tpd:Teth39_0489 transcriptional modulator of MazE/toxin, MazF" /codon_start=1 /transl_table=11 /product="transcriptional modulator of MazE/toxin, MazF" /protein_id="YP_002458900.1" /db_xref="GI:219668465" /db_xref="InterPro:IPR003477" /db_xref="GeneID:7259407" /translation="MDTIKQEISRGDIFYADLNPVVGSEQGGIRPVLILQNDIGNRHS PTTIVCAITGRPKKPLPTHAAITGAGRLSRESFALLEQIRTIDRSRFRGFIGRLDEQE MEEINQALSISVGLSPAIFLFGRETP" gene 2634751..2634909 /locus_tag="Dhaf_2437" /db_xref="GeneID:7259408" CDS 2634751..2634909 /locus_tag="Dhaf_2437" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458901.1" /db_xref="GI:219668466" /db_xref="GeneID:7259408" /translation="MTNTQVVDNLMFVAALQQLVQLAAAKGMTEPEIEKVKKDLERRL RPTIIAPC" gene 2635003..2636583 /locus_tag="Dhaf_2438" /db_xref="GeneID:7259409" CDS 2635003..2636583 /locus_tag="Dhaf_2438" /inference="protein motif:PFAM:PF00239" /note="PFAM: Resolvase domain; Recombinase; KEGG: hmo:HM1_0133 resolvase, N-terminal:recombinase, putative" /codon_start=1 /transl_table=11 /product="Resolvase domain protein" /protein_id="YP_002458902.1" /db_xref="GI:219668467" /db_xref="InterPro:IPR006119" /db_xref="InterPro:IPR011109" /db_xref="GeneID:7259409" /translation="MLNTNLASAEPPKITVISAKSQEIAKLRVAAYARVSSDSDDQQN SYIAQVDYYTKNIATHEGWELADIYADEGITGLVASKRDDFNRMIQDCRDGKIDRVLV KSISRFARNTKEYIQYVRELLRLGISIHFEKENIDTGKMTSEQIATIYGAFSQMESQN HSNNMRISVRMRMEKGTYISPSTPYGYKLEERALVIIPEQAEVVRRIFTAYLSGQGKE DIANELNRMGIPRTKDRKMWYSTTIGYILTNISYTGDMVWQKSFATNDIPFRQVRNKG EKPKYFVENCHEPIVSQDEFQRVQALLETRRLQIAGTVSSALLKKKLHCGNCGTLFRR KIVNEKVYWACRRHDSHKDLCPISQVPEEQIITAILRMYHKLKRHREQILSPLLSQLT ELREKELRSNRKINDIDKEIAQLTEQNLVLVRLKSKGYVDSALYLSQTGDIDFKLREL RRLRRRIMETTGEDGQIKATETMLDYLESSPEHLGELTEELFETLVENITISSETEMN LTLYNGLTLKETMERTVR" gene 2636585..2637478 /locus_tag="Dhaf_2439" /db_xref="GeneID:7259410" CDS 2636585..2637478 /locus_tag="Dhaf_2439" /inference="protein motif:PFAM:PF07508" /note="PFAM: Recombinase; KEGG: ckl:CKL_3841 hypothetical protein" /codon_start=1 /transl_table=11 /product="Recombinase" /protein_id="YP_002458903.1" /db_xref="GI:219668468" /db_xref="InterPro:IPR011109" /db_xref="GeneID:7259410" /translation="MTWQRKIPFGYMMKNGEILCCPTESATVKEIFRLYSEGMAYSKI ADEMMLRGIAYHKHTDQWNKHMVKRILENERYLGEKEYPPIIESETFMRVQLIRGDKN TYTPCPEYIKPIREKAVCGVCGGKMARDTRASSKVRWYCQTEGCANRRYIEDEDTHTA LTGRLNALAQKPDLFVWPFPKQAGELTLDAARIQNEVIRELNKAEPGVEYTKMLILAC AAEKYSGLPDYTPYHQMQILRERITERPMDDELRNEILQTAVQEIRFTEVGLELRLIN GETLEANGKEIGRCLRQQQGK" gene 2637451..2639070 /locus_tag="Dhaf_2440" /db_xref="GeneID:7259411" CDS 2637451..2639070 /locus_tag="Dhaf_2440" /inference="protein motif:PFAM:PF00239" /note="PFAM: Resolvase domain; Recombinase; KEGG: hmo:HM1_0131 resolvase, N-terminal:recombinase, putative" /codon_start=1 /transl_table=11 /product="Resolvase domain protein" /protein_id="YP_002458904.1" /db_xref="GI:219668469" /db_xref="InterPro:IPR006119" /db_xref="InterPro:IPR011109" /db_xref="GeneID:7259411" /translation="MPATATRKVTVIPADPIYAQKDIRKKTLRVAPYCRVSTNSEEQL DSYQAQIEYYTERIAAQPEWTMVDMFADEGKTATSTKKRKDFLRMIKACEKGKVDLVI TKSVSRFCRNTLDGLDYVRKLKRMGVGVFFEKENVNTLYMDNEMILTFMMSQAQAESE SMSGNIRWGHRKNFKDGKVYYHYAGFLGYRKGEDDLPEIDPEEAEIVRRVFSRYLVGH SVSKIIADLEADGIKTVRGKEKWNDGVIRGMLKNEKYIGDALLQKTFIADLFTRQSKK NNGELPQYYVENCHPAIIDKLTFQRVQEEMARRSSLRKVSANAKTELAKYSGKYVLTE LLSCGNCGSPYRRVTWTRPEGKKIVWRCINRLENGKKFCKDAPTLEESRIHAAVVSAM NEMFSLKTMKSLLQDSILSALSGNSGETSIAAIDSRLSELRARQYELLQFAASVGADS TQYDEDLNKVSMEFSALVSKRSELEKNQQGIAQADKRAEQIAAELDKVDTGITCFDEL TVRQLIGAIKVLDEDKLLIRFKDGTEIEQIM" gene 2639085..2639825 /locus_tag="Dhaf_2441" /db_xref="GeneID:7259412" CDS 2639085..2639825 /locus_tag="Dhaf_2441" /inference="similar to AA sequence:KEGG:CLI_1932" /note="KEGG: cbf:CLI_1932 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458905.1" /db_xref="GI:219668470" /db_xref="GeneID:7259412" /translation="MIYITGDTHGNFRRFEKEYFPAGQSLCRDDYIIVCGDFGIWDET PQSNRDLDWLNNQPFTTLFIDGNHENFDLLNRFPTVKWKGGDVHQVREHILHLMRGQV FEIGGMTFFTMGGAASHDISAGILEPDDPDFLYRKQVLNRHRALYRINHISWWKEELP CDEEYETALKNLENAGWHVDCILTHCAPDSIAAQVCHPYKPDRLTGFLETVKRRCSFD YWFFGHHHDNRTIEGRFILQWEQMVEIQ" gene 2639849..2640106 /locus_tag="Dhaf_2442" /db_xref="GeneID:7259413" CDS 2639849..2640106 /locus_tag="Dhaf_2442" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458906.1" /db_xref="GI:219668471" /db_xref="GeneID:7259413" /translation="MTPREAIAKTESLWYEGKSPQEIVEFQLYEDRQCMPLELYQEAV VKVLGRPVFTHEYKEPEKLIAEYEAVMAADGSQSKQGHEMA" gene 2640121..2640402 /locus_tag="Dhaf_2443" /db_xref="GeneID:7259414" CDS 2640121..2640402 /locus_tag="Dhaf_2443" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cyt:cce_4790 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458907.1" /db_xref="GI:219668472" /db_xref="GeneID:7259414" /translation="MFMDHKQVQRIKDQYPQGTRIRLIGMDDPYAPILSGTEGMVNVV DDIGTLHCTFDNGRTLGVIPGEDSFSVISRPEQPELQESEAERFSMKME" gene 2640415..2640978 /locus_tag="Dhaf_2444" /db_xref="GeneID:7259415" CDS 2640415..2640978 /locus_tag="Dhaf_2444" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458908.1" /db_xref="GI:219668473" /db_xref="GeneID:7259415" /translation="MEEKDLRAVYIDRLNAMLPTVEFAKLDHSCNSDDFGYAKEILKR MHDLCIEVYGTDYFDDYTYEIVDLPAVIRGRNTGHIGLGIVTLDLESSGEHWGTFFLT PKGVIEQGGEHITAAESKYLSTVYIPYEYWYTVPVEGDIHVDFDNVPWRVQDLLNHCS PEQPEMEKDGQQADDPNSNQQNGPAMN" gene 2641038..2641616 /locus_tag="Dhaf_2445" /db_xref="GeneID:7259416" CDS 2641038..2641616 /locus_tag="Dhaf_2445" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458909.1" /db_xref="GI:219668474" /db_xref="GeneID:7259416" /translation="MKHITTDELRTMTDREGLVIQGCGGDLSEWVDGINELLTQEGIL QNGDTFKDVSVFEHNGCTNLLFSMENMDLDIGKLAMWRLQSHATFGGTWLSDYLPNRL GVDMNGPPVQKEKPDCALIGQDGNIFNLMGIAARTLKENGLGDQAKEMRERITASGSY DNALCIIGEYVNITSVEDAQEQDCGFEMEQSY" gene 2641700..2642605 /locus_tag="Dhaf_2446" /db_xref="GeneID:7259417" CDS 2641700..2642605 /locus_tag="Dhaf_2446" /inference="protein motif:PFAM:PF06250" /note="PFAM: protein of unknown function DUF1016; KEGG: glo:Glov_3223 protein of unknown function DUF1016" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1016" /protein_id="YP_002458910.1" /db_xref="GI:219668475" /db_xref="InterPro:IPR009362" /db_xref="GeneID:7259417" /translation="MKALKNESSLYMEQIASAITDCYESNDKPSNQSLMELYTLIGRC ICRQGEKAFVAHLAETLAIRFPLLKGFSLRNLRRMRDFYRTYANAPALMEKAQSLSWT QNAVILECCESDEQRSFYIRLAAAQNLSKLALMKAIQENAFDILCNEESPAENTEPDI APVSDISSNTGVDTTATVETACAPFVPACEPLRQGGDMPSRAGRLSTAASAWRESNRQ AKRKADDDPPPLGVLNQPLPYPPPLRFRTDKMKPPPPQNLPPSVRPQMENLRELFISA IKQNTPAELTRAVLCQNNLCLCTLS" gene 2643008..2643211 /locus_tag="Dhaf_2447" /db_xref="GeneID:7259418" CDS 2643008..2643211 /locus_tag="Dhaf_2447" /inference="similar to AA sequence:KEGG:Amet_1693" /note="KEGG: amt:Amet_1693 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458911.1" /db_xref="GI:219668476" /db_xref="GeneID:7259418" /translation="MYDMKEDKNKYLAMGIPLGLCFGACIGIIIGIVMNGGNFIFCIP LGAGLGMLIGIVVGSVLDSNNKK" gene 2643409..2643960 /locus_tag="Dhaf_2448" /db_xref="GeneID:7259419" CDS 2643409..2643960 /locus_tag="Dhaf_2448" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_4217 ribosomal-protein-alanine acetyltransferase, putative" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458912.1" /db_xref="GI:219668477" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259419" /translation="MKFLLGTKDLLLKSSDVNLTESLLEYYLRNKAFLEEFEPKRDPS FFTYEGQYNQLEKEVVDADQKVSFHFYIFKKNDDKKIIGCIGLNNIVWGSFLSCFLGY KLDGQHINKGYMTQAVCAVADFAFSDLHLHRIEGNIMPRNQASLRVLEKCGFVNEGMS KKYLKINDIWEDHVHMVLINEHM" gene 2644036..2644905 /locus_tag="Dhaf_2449" /db_xref="GeneID:7259420" CDS 2644036..2644905 /locus_tag="Dhaf_2449" /inference="protein motif:PFAM:PF04439" /note="PFAM: Streptomycin adenylyltransferase; KEGG: bcy:Bcer98_1799 adenylyltransferase" /codon_start=1 /transl_table=11 /product="adenylyltransferase" /protein_id="YP_002458913.1" /db_xref="GI:219668478" /db_xref="InterPro:IPR007530" /db_xref="GeneID:7259420" /translation="MRSEKEMMEIILSTAKKDERIRAVYMNGSRTNPNVPKDIYQDYD IVFVVTETDSFLADKDWIGGFGKPLIVQEPDLNDNAWGEQHDFSRRYAWLILLEDGNR LDLVIEIKEEAQKNFIGDKLTILLLDKDGFLPEIPRPTDEDYHLKKPNEAQYRACCNN FLWCLNNVAKGIARDELPYAMEMYNCVVRNDLKDMISWYIGINTGFSVSVGKMGKHFK KFLTQELYTMYAQTYSDSSYENFWAAIFIACELFRSIAPEVADYFGYTYNWQDDKNMA TYLNRVKNNDFMQ" gene 2644951..2645391 /locus_tag="Dhaf_2450" /db_xref="GeneID:7259421" CDS 2644951..2645391 /locus_tag="Dhaf_2450" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_2289 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458914.1" /db_xref="GI:219668479" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259421" /translation="MELIVKRFEELTAEELYEILKIRVAVFVVEQNCPYQEIDGKDKQ SFHIYLKDDCGIQAYLRVVDKGVSFNEVSIGRVIAVKRRCGIGSRILSEGIKFAKNRL GAAAIKIEAQTYAKEFYEQQGFKQVSEEFLEDGIPHIQMILDVI" gene 2645621..2646004 /locus_tag="Dhaf_2451" /db_xref="GeneID:7259422" CDS 2645621..2646004 /locus_tag="Dhaf_2451" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458915.1" /db_xref="GI:219668480" /db_xref="GeneID:7259422" /translation="MKKKLGVIAVLTIIIVIGLLFLSTGGKMASVMLVDYSLSEDGKM ITLKVGVASSMGYVRTLKTSEDGNKKRITFYSTYGLNSNIGAKNEFQVELSPYCDEIY FYSGNDEYKLKLQKSSQTNAWERSK" sig_peptide 2645621..2645689 /locus_tag="Dhaf_2451" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.883) with cleavage site probability 0.452 at residue 23" gene 2646244..2647470 /locus_tag="Dhaf_2452" /db_xref="GeneID:7259423" CDS 2646244..2647470 /locus_tag="Dhaf_2452" /inference="protein motif:PFAM:PF06580" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_2171 signal transduction histidine kinase, LytS" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_002458916.1" /db_xref="GI:219668481" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR010559" /db_xref="GeneID:7259423" /translation="MLKRAVMHRDAAYKIKTPMDSIKWCRYIVNIGYICVALMAFAHV AWYFGARDYLVNPPDIYLKYFIIAPTIGTCALNLLADLLVRSARVPIQAKEYLCSFIL VIYSFYLIMAHEIAVVLLCTFMLSIFISAIFSKVKITRWVFLASMLSLMLFGVKMYVT GNMDSRMVMQIFITCLMFVGSYLMAKMLIQHYHDNFAAITSSHEEAAKNELAFLQAQI KPHFLYNAINTMVSFCHTDSERAASLLINFSKYLRLVFDVDHKSMLVSLEREIELIKA YVAIEKARFGGQISIEYTIEPELLSMEIPSFCLQPLVENAIKHGLCKKAAGGTVLISA QKSEGTIIIKISDTGIGMGAEQLNKLKNSESSKEGVGFFNVSRRVKSWQDAQLDIQST EGGGTTVTITLSDIIA" gene 2647927..2648631 /locus_tag="Dhaf_2453" /db_xref="GeneID:7259424" CDS 2647927..2648631 /locus_tag="Dhaf_2453" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458917.1" /db_xref="GI:219668482" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259424" /translation="MEPMIRLTEVVKEYIMGEIRIRAADGISFEVGQGELVVVLGPSG AGKSTVLNILGGMDSATSGEVVVNGQDITQFNRNELTLYRRKCIGFIFQFYNLMPNLT ALENVEIAAQISDEPLQAAAILESVGLGDRMQNFPAQLSGGEQQRVSIARAVAKNPTL LLCDEPTGALDYVTGKAILKLLHDVSRNFQKTVMIITHNSSIAQMADKVIKIKNGRVE AVEINRNPLPIERIEW" gene 2648631..2651009 /locus_tag="Dhaf_2454" /db_xref="GeneID:7259425" CDS 2648631..2651009 /locus_tag="Dhaf_2454" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: swo:Swol_1714 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002458918.1" /db_xref="GI:219668483" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7259425" /translation="MVIFLKKSLRDLKEAKGQFISVLAVVIIGVMFYTGLYSALDIFS GAGQKYFTEYRLADLSSTVYRAPEGVVERVRAIPGVKMAEGRVLQDVRIFMEDRNAVV RLISLPDQKRAVVNDIMLKAGSYFSADAANQCLVSEDFFKANHLVIGQTIEPIVNGER VKLSIVGTVKGPEYMYEIRDATEVFPDHEKFGVIYVQASYLQTILDYKGSVNDISVLL TKDGDSKKVKAELEKMLAPYGLVSTVEKKDQISYSMFHSDETGLQSMAAIFPMLFFIA SAVIIYITMTRMIENQRTLMGVFKALGYSDWDIMLHYQTYPLLVGILGSILGSLIGLF FIGEALLGIFNSFYNLPTENSSVQLAMVVPASLTALFFCVFAGYNACRKELRLVPAES MRPKPPASGRKTLLENLGFFWQRLNFSWKIIFRNLFRYKRRSALASVGVIFSMALLLI ALAFRSSMGNLMAMQYEEIQKFDLKINFTQMLAVDELSTIRNLAHVKSVEPVLETGME LTYGWKKKDIGVLALDREAQLYGVYDRKGKAAILPSDGVLLPARLMETLGLQTGDRVT LRSYYPGKNTDRDKKTVVVKGETSQFIGQSAVCSMDYIDYLLDEGAVVNGAHIKLDDG QYEKEVTAKLEDILTINTIQSKAEVVANTNKQLQSMNSIIFFMLFGASILTIAVIYNI TNINIFERRREIATLSVLGFTSAELKSLVFNENFFISAFGILIGAPLGRFIAEVAIDT QATETMQLPMVMEPANYLLAAALIIAFTAIANWLLRNKITAIDMVESLKSAE" gene 2651041..2652216 /locus_tag="Dhaf_2455" /db_xref="GeneID:7259426" CDS 2651041..2652216 /locus_tag="Dhaf_2455" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: amt:Amet_0600 RND family efflux transporter MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_002458919.1" /db_xref="GI:219668484" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7259426" /translation="MNIPTDLQKVKNDKRNMRLTKKLLWVIGILLVLAAGLGWTLSNR GTPAETAPAKLGDIQKYVEETGEVKCSDSATVYLEGSGLIKRIAVETGQQVQKGDLLL SMDREQLEISLKNAAELLNQAKAQSAAGEEAYTMALKDYDNTRSLAEAGAASEWELTQ KEAALKSAEAVRSGNQAALEQAELSVATSSLALSKQQVLAPLKGTILQKRVEVNAFGV PGTVAFVIGDTENLEIQAKILAEDAASIQVGNKATLTVRTKEQQTLAGTVVKIAPTAE DEVSSLGVKQKKVTVTIKPLDAQVALLPGSEVDVRVITETKSGVVIVPAGAVFDYRGQ SCVFTVEEGKAALRAVQRGIQNESLCEITEGLQEGETVLSAPDNSIEEGTRILSPLQ" sig_peptide 2651041..2651145 /locus_tag="Dhaf_2455" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.847) with cleavage site probability 0.265 at residue 35" gene 2652276..2652911 /locus_tag="Dhaf_2456" /db_xref="GeneID:7259427" CDS 2652276..2652911 /locus_tag="Dhaf_2456" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: spi:MGAS10750_Spy1700 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002458920.1" /db_xref="GI:219668485" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7259427" /translation="MYETFEKLPDGKKEQIIQVCIEEFIENGYQNASTNTIVKRLGIS KGVLFLYFKNKKNLYLYLVEYIMEFFIQDYFEEYAGGPVININVFDNLGEYYKELMQK KPELFLFMLQAFVNTPAELKEEIDARHNQAHDSLFRHMNNEGFRPGIDIHLVDDLLHM VSYYVGQLITNDLKGKDLNTIIKDEINKNIVRYAELFAKYVDILKYGVYER" gene 2653360..2654310 /locus_tag="Dhaf_2457" /db_xref="GeneID:7259428" CDS 2653360..2654310 /locus_tag="Dhaf_2457" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rru:Rru_A3374 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002458921.1" /db_xref="GI:219668486" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7259428" /translation="MLNGNISPHLFRVVFENSPIGLVVVNEDTSLKRINNYMLATFNI DPQDFHERMLGNAFQCSDIYLTGKSCGEGGHCHDCGLRKVLSTAMLEGANILETVVEH DFIIDGTNRKKWFKVSASRVETDDEVLGILSFVDITTQMEYEELLKNLLSLDAATGAM NKYALINSLKNLTTGKEGLTVAMIDIDDFKLVNDRYGHLTGDRVLNLFCSVAFTNTRK QDIVGRFGGEEFMLIFPDMVSRLVIKALQRISTSFRTACMNELGFSPTFSVGVAEFST KKMAGMTIDAIIAEADENLYASKNAGKNRVTAFGSSQVFK" gene 2654440..2654949 /locus_tag="Dhaf_2458" /db_xref="GeneID:7259429" CDS 2654440..2654949 /locus_tag="Dhaf_2458" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: cbt:CLH_1809 acetyltransferase, GNAT family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458922.1" /db_xref="GI:219668487" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259429" /translation="MLIRQETKEDYAQIYDLVKTAFSTIEHSDGNEQNLVTALRNSGA FVPGLSLVAEIDGRIAGHIMFTEGKVGQDTVLILAPLSVLPEYQQQGIGTALIAEGHK AAQALGYQYSLVLGSEQYYPRSGYRPARGLGIEVPVGMPDENFMAIKLQENAKPIKGA VTYAKEFGI" gene 2655123..2656511 /locus_tag="Dhaf_2459" /db_xref="GeneID:7259430" CDS 2655123..2656511 /locus_tag="Dhaf_2459" /inference="protein motif:PFAM:PF00324" /note="PFAM: amino acid permease-associated region; KEGG: lsp:Bsph_0500 hypothetical protein" /codon_start=1 /transl_table=11 /product="amino acid permease-associated region" /protein_id="YP_002458923.1" /db_xref="GI:219668488" /db_xref="InterPro:IPR004841" /db_xref="GeneID:7259430" /translation="MSSEKDHHVELHRGLKNRHIQMIALGGAIGTGLFYGSATTIQLV GPAIIVSYLLGGTAIFFIVRALGEMCVDQPVAGAFSYFAYKYLGDFPGFFSGWNYWFN YIAVSMAELTVVGVYINFWYPNVPQWVTALAFLVIITLINLINVEAFGEFEFWFALIK VVAILAMIAFGLVMIFFGLGEQGAVGFSNLWTHGGFLPNGVWGLLLSLVIVMFSFGGV ELIGITAAEADDPKRSIPKAINQVVWRILIFYIGALTILMILYPWDQIGTSGSPFVEI FSAIGIPAAAHILNFVVLTAALSVYNSGIYSNGRMLHGLALQGNAPKFLTKVSRNGIP INGVFASSAVTLIAVILNFLVPGKVFLYLISIATIAGIFNWAMILVTQLRFRKVEAEK GREDQLQFKMPLYPISNYIALAFLAMVVVLMAYIPDMVYSLYIGPIWIIILYIGYKFL RRNPETKPPHRE" gene 2656609..2658030 /gene="tnaA" /locus_tag="Dhaf_2460" /db_xref="GeneID:7259431" CDS 2656609..2658030 /gene="tnaA" /locus_tag="Dhaf_2460" /EC_number="4.1.99.1" /inference="protein motif:PRIAM:4.1.99.1" /note="tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan" /codon_start=1 /transl_table=11 /product="tryptophanase" /protein_id="YP_002458924.1" /db_xref="GI:219668489" /db_xref="InterPro:IPR001597" /db_xref="InterPro:IPR011166" /db_xref="GeneID:7259431" /translation="MVRKAEPYRIKMVETMRMISREERERALQEAGYNPFALKAEDVY IDLLTDSGTGAMSDRQWSAMLLGDEAYAGSKSFYKVKDAVADIFKYEYTIPTHQGRGA EQVLFPHLIKHKGQYVLGNMHFDTTMAHIELNGAVPINLVIDDAFDTQKEHPFKGNFD LEKLEKFIQEKGKEEIAFIIITITCNSAGGQPVSMENIRAVKQIADKYGIFVDIDSAR FAENAYFIKQREKGFERAGIKDIVTEMYSYGDAFTMSAKKDAIVNMGGIIGIKNNTEL YQAASATCVPMEGFVTYGGLSGRDMEALAVGLYEGLDEEYLESRIGQVEYLGEELRKR GIPIQWPVGGHAVFVDAKKFLPHIPGDQFPAQALTNELYIETGVRAVEVGSLLLGRDP ETGKQKVAGAEFMRLTIPRRVYTDRHMDVIVDGLAKIAERREQIKGLDFVYEPKVLRH FLCKLKPIGLDPKAGEDVNPMVP" gene 2658260..2658733 /locus_tag="Dhaf_2461" /db_xref="GeneID:7259432" CDS 2658260..2658733 /locus_tag="Dhaf_2461" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: ckl:CKL_2428 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002458925.1" /db_xref="GI:219668490" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7259432" /translation="MNKEEQVIMSFRDLFNKLVWLNKVKMEASLKDYKPSEVHCIEYI GRHADSNVTKLAESFYMTRSAISKITKKLMEKDLIESYQKPDNKKEIYFRLTSQGKAV YKTHEHLHKEFQERDKAVFEQVTEEQFDNMLSFVEKYSRHLDTEIKKLEIDMKSE" gene 2658898..2660133 /locus_tag="Dhaf_2462" /db_xref="GeneID:7259433" CDS 2658898..2660133 /locus_tag="Dhaf_2462" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: bca:BCE_2504 tetracycline-efflux transporter, putative" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458926.1" /db_xref="GI:219668491" /db_xref="InterPro:IPR001411" /db_xref="InterPro:IPR001958" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259433" /translation="MFKNGSDHEQNTEQTIDKKALLFGLMSVFLCGIGFSIITPVVPF LVQPYISNPEEQAIAVTLLTSVYAACVFLAAPVLGALSDRYGRRPLLLICLLGSAIGY LVFGIGGALWVLFAGRIIEGITGGSIGTIFAYFADIIPPQQRTKYFGWVSAVVGVGTV IGPTLGGLLAKFGYSVPMYFGTVITLLNVVYGLFYMPESLDKNKRLQEISLIRLNPFI QLANILSMKSLTRLLVSAFLLWLPNGSLQAVFSQFTLDTFHWQPALIGLMFSIMGLQD IIAQGFIMPKLLLKFSDQQIAMLGMAAEIIGYSFIAASALFVFYPLLIAGMFIFGFGD SIFGPSFNGMLSKSVPSGEQGRIQGGSQSIQSLARMMGPLIGGQIYVSLGHAAPAFMG MLLIAAAIPVLHKRPQANM" gene complement(2660318..2660695) /locus_tag="Dhaf_2463" /db_xref="GeneID:7259434" CDS complement(2660318..2660695) /locus_tag="Dhaf_2463" /inference="protein motif:TFAM:TIGR00004" /note="TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cdf:CD3187 putative regulatory endoribonuclease" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="YP_002458927.1" /db_xref="GI:219668492" /db_xref="InterPro:IPR006056" /db_xref="InterPro:IPR006175" /db_xref="GeneID:7259434" /translation="MSLKVLNTEKAPGAIGPYSQGIQAGNLIFTSGQLPLNPTTGELT SDIRSATKQSLENVKNILESAGSSMDKIVKTLIFLKDMNDFAEMNEVYGSYFPTNPPA RSAVQVARLPKDAIIEIEAIALV" gene 2660893..2661372 /locus_tag="Dhaf_2464" /db_xref="GeneID:7259435" CDS 2660893..2661372 /locus_tag="Dhaf_2464" /inference="protein motif:TFAM:TIGR00277" /note="TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: drm:Dred_1819 metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002458928.1" /db_xref="GI:219668493" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7259435" /translation="MKWAFINHMERINELLGNLEQEEMKRDYPIAWERTHAASCAQVG RLLAQKRGVDLELAALACSLHDIGRWYTGLQGDHALRGEEPVRRFLESSSLKEEDKKA VVQAVIRHSEKDKVGSPLDEIVKDADVLDCYFHGDEISKPYHLARLKEVMGELNLES" gene complement(2661434..2662213) /locus_tag="Dhaf_2465" /db_xref="GeneID:7259436" CDS complement(2661434..2662213) /locus_tag="Dhaf_2465" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_0938 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458929.1" /db_xref="GI:219668494" /db_xref="GeneID:7259436" /translation="MNIKKILAGITGIGLIVLLLLFVNAWVGNPVSNLLAKQAAQKYI DVNYSNLDLEIQSSNYNFKFDAYLVFVQSSLSEDTAFSIYTDSYGKVLRDDYEYEVAN NFTTYRRLDAEMREIAKKLIGSRLDYDFDYISFQFTKEDHDLMKLERDMKLDISHPPL PLVADVVLYSEDLSYSKVAEVAKALEAILKEESIPVSQYSVRLLPLANKPAKEDQAAP WVNSLSLSDFPAEHMAEDNLPQVMEQFEADRVAELNAKDKK" sig_peptide complement(2661434..2661511) /locus_tag="Dhaf_2465" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.572 at residue 26" gene complement(2662220..2662768) /locus_tag="Dhaf_2466" /db_xref="GeneID:7259437" CDS complement(2662220..2662768) /locus_tag="Dhaf_2466" /inference="similar to AA sequence:KEGG:Clos_0939" /note="KEGG: aoe:Clos_0939 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458930.1" /db_xref="GI:219668495" /db_xref="GeneID:7259437" /translation="MSKISCSVCLDLMPLVKDGVASEDSRLLVQEHLAGCEHCNHSWG EKTGAEIEATTAMDDIVVLGKIKKQIIVFLLCIMLAGTLLGMVISNGMLMFYNGLIMP AIGGFGYILFKRKAYFVPLGLFAFSFIWVSLRGLIDGILTYTGIIELISMSAWWSAIL SAFSAVGVLIAWLLHYAFKKEV" gene complement(2662761..2663267) /locus_tag="Dhaf_2467" /db_xref="GeneID:7259438" CDS complement(2662761..2663267) /locus_tag="Dhaf_2467" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aoe:Clos_0940 ECF subfamily RNA polymerase sigma-24 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002458931.1" /db_xref="GI:219668496" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259438" /translation="MADSVMQKVYEQHKDAVYAYLLSLTHSKTLSEDLTSEVFISAIK SLPGFKGNSDLKTWLFSIARYTWYGHLRKSKKELTPEDLLEVYFSDPAGLESTLLTQE LLDRIHDLLNREPDKNRDIVLMRIEGYSFYEIARKHQISESSARVLDFRTKHKIRTIL LKEGYSYE" gene 2663488..2666109 /locus_tag="Dhaf_2468" /db_xref="GeneID:7259439" CDS 2663488..2666109 /locus_tag="Dhaf_2468" /inference="protein motif:TFAM:TIGR00593" /note="KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2" /codon_start=1 /transl_table=11 /product="DNA polymerase I" /protein_id="YP_002458932.1" /db_xref="GI:219668497" /db_xref="InterPro:IPR001098" /db_xref="InterPro:IPR002298" /db_xref="InterPro:IPR002421" /db_xref="InterPro:IPR008918" /db_xref="GeneID:7259439" /translation="MSKILILDGNSLANRTFYALPMMTTADGKPTNVLHGFMTMLLRL LLEQKPDYWVVAFDKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPIL ECPGYEADDIIATVTSLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYD EGALYEKYQLRPAQIIDLKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNID KISGKKLQENLRNNTDKALLSKKLATMLYDIPLEIDLDRLVYRRPDEKTFTAALDKYV LKSVARIWHEHHGAGEEGKDTPREEVLKPWPLRELTGEEWLARFPQWQADQGTLVLTC ANTGGNPHWARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVADSKVL YSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLELVKEYIPGAGEFANLAEEASAL AQVADSYKETLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTVELQ RLEQEIYADAGETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTDADTLEELRDQHSI VERVLDYRQLSKLMSTYVNGLLAQIHEGRVHTTFQQTVTATGRLSSTEPNLQNIPIRL ELGRLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASE VFGIPMAEVTKDMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGV KRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIM KLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFPLSVPLIA DCKTGPNWYDMESYSLE" gene 2666207..2667028 /locus_tag="Dhaf_2469" /db_xref="GeneID:7259440" CDS 2666207..2667028 /locus_tag="Dhaf_2469" /EC_number="3.2.2.23" /inference="protein motif:TFAM:TIGR00577" /note="KEGG: hmo:HM1_1749 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding" /codon_start=1 /transl_table=11 /product="formamidopyrimidine-DNA glycosylase" /protein_id="YP_002458933.1" /db_xref="GI:219668498" /db_xref="InterPro:IPR000191" /db_xref="InterPro:IPR000214" /db_xref="InterPro:IPR012319" /db_xref="InterPro:IPR015886" /db_xref="InterPro:IPR015887" /db_xref="GeneID:7259440" /translation="MPELPEVETIRRSLSQHILERRIEEILIRWPGAVEGYEEKTFAD AVRGLKFQSIERRGKYLLFTLEEGWSFIAHMRMTGRMVYHAQSQEPEKHTHVVLKLSS GEIHFTDTRKFGRLQLVRTEERLQQPSLARLGPEPLEEGFSAAELGRRLAPRKLAIKA ALLDQTLVAGIGNIYADEALFRAGIAPERCANSLTKEEIEKLYPAICQVLEEGIAANG TSFRDYQDANGERGDFQKELKVYGRGGEPCKECGHTLVRIRLAGRSTVFCPCCQV" gene 2667772..2669634 /locus_tag="Dhaf_2470" /db_xref="GeneID:7259441" CDS 2667772..2669634 /locus_tag="Dhaf_2470" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hmo:HM1_1750 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458934.1" /db_xref="GI:219668499" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259441" /translation="MSILYCRSCGVDVSGEALFRQVTFAVEKGEKVGLVGPNGAGKTT LLRACLGEHPLESGEVFLTGTWGYLPQNPLVEDQGTVWESMLAERADLIEMKEQLHVL EERMAHTADEKVFAQYSALTERFETMGGYALEAQVRKILSGLGLTKETEHPIQHLSGG QKTRLALSKLLLRSPEFLILDEPTNHLDMDALEWLEGFLKGYDGAILVVSHDRYFLDH VVQKVLHLEKGGLKSYPGNYSEYELQRAVEETTLVREAERVSKKIARLEEYIRRYKAG IKSKQARGRESQLQKIKPVEVNKTPKSLHISLATGRRSGDRTLMLEDVSVEFPGRRLF HGVDVELRRGDRVALLGENGIGKTSLLKAIKGSLPYQGEIRLGANVKLGYYSQEHEEL HGKGSIMDEIRGDTDLLDPEIRSLLARFGFVGEEVFKPVSVLSGGEKSRLALAKLFLS QGNLLLLDEPTNHLDTRMRDVLEEALQDYDGTLLVVSHDRYFLDRVVNKIARLTPEGL KIYEGDYSMYKAQVQEEEAASTGGSASSGTAVGTRPHEQSKETEREARRRQRKAQQLE AQIAELEEEIQSLEEQMAAVTSNYEKALELHKLFEEKKVLLDSTMMEWLEITEE" gene 2669702..2670358 /locus_tag="Dhaf_2471" /db_xref="GeneID:7259442" CDS 2669702..2670358 /locus_tag="Dhaf_2471" /inference="protein motif:TFAM:TIGR02840" /note="TIGRFAM: sporulation protein YtaF; PFAM: protein of unknown function DUF204; KEGG: dau:Daud_1405 hypothetical protein" /codon_start=1 /transl_table=11 /product="sporulation protein YtaF" /protein_id="YP_002458935.1" /db_xref="GI:219668500" /db_xref="InterPro:IPR003810" /db_xref="InterPro:IPR014205" /db_xref="GeneID:7259442" /translation="MGAAILFAIALSFDGFGVGVSYGIRRIRIPLLSMLIITLCTVVA MGTALFFGDVLIGVITVVSPNLIAAGILLTLGGYQLIKAIPHLFKKETPKAEPASTIA VREPVLKLEFKILGVVVQVLKTPEQADLDGSGVISAKESVLLGTALSLDAFASGLVLG LAVGIFNSLSVIAWVALMQIFMIKCGQALAGRLPEEYLGKLGLLPGTMLILIALGKLI" gene 2670388..2670990 /locus_tag="Dhaf_2472" /db_xref="GeneID:7259443" CDS 2670388..2670990 /locus_tag="Dhaf_2472" /EC_number="2.7.1.24" /inference="protein motif:TFAM:TIGR00152" /note="KEGG: bld:BLi03054 YtaG; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="YP_002458936.1" /db_xref="GI:219668501" /db_xref="InterPro:IPR001977" /db_xref="GeneID:7259443" /translation="MWVIGLTGGIGSGKSTVSRWLSQQGVPIIDADRTVHGLYHEPET MAAITAAFGQDILTDTEEIDRKALGRIVFADDQARKQLEKILHPRVRVAMEKQQKALE QAGERICVWDVPLLFEAGYGSQMDELWVVWVPLDIQKQRVMERDALNAEEVALRIQAQ YSLGEKRNKADVVIDNSGKWEETVVQLRKEMERINREQGL" gene 2671172..2671771 /locus_tag="Dhaf_2473" /db_xref="GeneID:7259444" CDS 2671172..2671771 /locus_tag="Dhaf_2473" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; KEGG: drm:Dred_1595 lytic transglycosylase, catalytic" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase catalytic" /protein_id="YP_002458937.1" /db_xref="GI:219668502" /db_xref="InterPro:IPR000189" /db_xref="InterPro:IPR008258" /db_xref="GeneID:7259444" /translation="MKKKGFTVRRKKKRSGFLFTLVLCVIAFTFLFSSPPIKKVIYPY PYKSLIEHYAEQYHVDPLLVISVIRAESKFLPYSQSHKGALGLMQLMPDTADWIAETL GDGAFDQSELREPEKNIQYGTWYIASLQKEFQDIELVLAAYNGGRGHVNEWIRTEQLK VDDLNTEDIPFRETREYVQRVMDNYEKYQDLYGEKPRLK" sig_peptide 2671172..2671273 /locus_tag="Dhaf_2473" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.834 at residue 34" gene complement(2671800..2672171) /locus_tag="Dhaf_2474" /db_xref="GeneID:7259445" CDS complement(2671800..2672171) /locus_tag="Dhaf_2474" /inference="protein motif:PFAM:PF07885" /note="PFAM: Ion transport 2 domain protein; KEGG: lsp:Bsph_0167 hypothetical protein" /codon_start=1 /transl_table=11 /product="Ion transport 2 domain protein" /protein_id="YP_002458938.1" /db_xref="GI:219668503" /db_xref="InterPro:IPR013099" /db_xref="GeneID:7259445" /translation="MISFILTLKRLLSAVYRIMKEKAFKSLLVSLALILLSGTLFYKQ VEGWSLLDSFYFAFVSLIPTSVSTGFVPQADLSKWFTMIYLVVGVGVMLMILIMIGFA VVNFEKSEQEELKQKIIDKVD" gene 2672416..2673297 /locus_tag="Dhaf_2475" /db_xref="GeneID:7259446" CDS 2672416..2673297 /locus_tag="Dhaf_2475" /EC_number="1.8.1.9" /inference="protein motif:PRIAM:1.8.1.9" /note="PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbt:CLH_2301 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA" /codon_start=1 /transl_table=11 /product="Thioredoxin-disulfide reductase" /protein_id="YP_002458939.1" /db_xref="GI:219668504" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR002218" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7259446" /translation="MSEGFQLKSRYQLAIVGCGPAGMSAALNAKIRNKDFILLGSDFC SPKLAKAPQIDNYLGFHEIKGEDLRQNFLNHVKAMGIEVVPWKVLNIYPGPPFTLVGN NESFEADAVILATGVSPTKLLPGETELLGRGVGYCATCDGPLYKGKKVAIVSYSHEGE AEANFMAEICAEVYYLPFYKEVGQLDSRIIQKKARVKEISGTQKVEKLVLDNEEISVD GVFVLRESLPAEQIVPGLEMDKGAIKVNRELETGIPGLFAAGDCSGQPYQLNKAVGEG GTAALSAIKYLDEMKKG" sig_peptide 2672416..2672505 /locus_tag="Dhaf_2475" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.731) with cleavage site probability 0.660 at residue 30" gene 2673540..2674217 /locus_tag="Dhaf_2476" /db_xref="GeneID:7259447" CDS 2673540..2674217 /locus_tag="Dhaf_2476" /inference="protein motif:TFAM:TIGR01549" /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: btl:BALH_4908 HAD superfamily hydrolase" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase, subfamily IA, variant 1" /protein_id="YP_002458940.1" /db_xref="GI:219668505" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006439" /db_xref="GeneID:7259447" /translation="MYKALFFDVDDTLLNFEQCSREALGKTFRHFSMDYDDTVYELFR SIDQRLWLQQKQGELTVQDVINLRFQELFKQLQLGCSHIPLQTMFQERLAEEFFTEPH AAESLGYLSARYQLFVTSNGILKTQLKRLELAGLLPYFTDVFVSDHIGHEKPSVRFFE ECLQRSRLKPSEVLLIGDSLEADMVGAQTSKMDSCWYNPKHRNTDSDVEIDYIISDLL QLKDILQ" gene 2674347..2675057 /locus_tag="Dhaf_2477" /db_xref="GeneID:7259448" CDS 2674347..2675057 /locus_tag="Dhaf_2477" /inference="protein motif:PFAM:PF00106" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_2598 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_002458941.1" /db_xref="GI:219668506" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:7259448" /translation="MEGEKVAIVTGGSSGMGLAIARRLKEAGIEVIIFDIQKPPEEFP FYHVDIRDDGQIKSALSHISQLDILVNNAGIYFERYLEDTTNEEIDNMVDINIKGTYL MTRNALAKIKERQGSVIIIASCLGLVPELTSPLYCTTKAGLIMLTKCLAQQYADCGVR VNCILPGPINTPLLQKSFPDEATAARCAERVPLKRIGEPEDIANMVAFLVSGEAGYIT GGAFPVDGGVSSSSLYSK" gene complement(2675204..2676097) /locus_tag="Dhaf_2478" /db_xref="GeneID:7259449" CDS complement(2675204..2676097) /locus_tag="Dhaf_2478" /EC_number="2.7.1.39" /inference="protein motif:TFAM:TIGR00191" /note="KEGG: drm:Dred_1166 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="YP_002458942.1" /db_xref="GI:219668507" /db_xref="InterPro:IPR000870" /db_xref="InterPro:IPR006203" /db_xref="InterPro:IPR006204" /db_xref="InterPro:IPR013750" /db_xref="GeneID:7259449" /translation="MVRVRIPATSANLGPGFDCLGMALSLYNVVQIEAADSFQIALKG DYTAGIPGDETNLVWQSMCNLWEAIGFEIPTVSLELENNIPPTRGMGSSSAAIVGGLV AANEYAGGVLSKQQILQIANRIEGHPDNVAPALLGGVTLAVTAEASVIARTVHSQPQF MALAIVPDFYLSTEKSRNVLPASISRADAVYNLSRTALLVEALIHENYELLKEGMQDR LHQNQRASLVPGLGETLQVALDSGAYGSALSGSGPTILALVSSHRAEQVSQAMVDSLA AHGLTAKAYLLSVDSEGAAVI" gene complement(2676137..2677432) /locus_tag="Dhaf_2479" /db_xref="GeneID:7259450" CDS complement(2676137..2677432) /locus_tag="Dhaf_2479" /EC_number="1.1.1.3" /inference="protein motif:PRIAM:1.1.1.3" /note="catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine" /codon_start=1 /transl_table=11 /product="homoserine dehydrogenase" /protein_id="YP_002458943.1" /db_xref="GI:219668508" /db_xref="InterPro:IPR001342" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR005106" /db_xref="GeneID:7259450" /translation="MQVVKIGLLGLGTVGSGVIQILEQNANDIQNRSLSQIKVSKVLV RNLKAPRSIAGDFTLTDQAADVLTDPDISIVVEVMGGIEPAKTYILEAFKQGKNVVTA NKDLLALHGQELLDAAKEAGKDLYFEASVAGGIPIIAALKQSLAGNRISEVLGIINGT TNYILTAMTEQGRDYQEVLKEAQELGYAEADPTADVDGLDAARKLAILASIAFNSRVT VNDVYVEGIAKITSEDIAYARELNSTIKLLAVAKAQADGIEVRVHPAFVPDNHPLAAV SGVFNAIYVVGDAVGETMFYGRGAGSLPTGSAVVSDIIQVVRNINADSTANINCTCYN ELAIKSEQDFKSAFYIRLRVKDEPRVLATLALLFAEAGVSFASIIQKQKKRQEAEIVL VTHPTQESCLREALDSVRAYSKVLSIHNVIRFESGEHYD" gene 2677903..2678784 /locus_tag="Dhaf_2480" /db_xref="GeneID:7259451" CDS 2677903..2678784 /locus_tag="Dhaf_2480" /EC_number="2.6.1.21" /inference="protein motif:TFAM:TIGR01122" /note="catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="YP_002458944.1" /db_xref="GI:219668509" /db_xref="InterPro:IPR001544" /db_xref="InterPro:IPR005785" /db_xref="GeneID:7259451" /translation="MEKLIYLNGEFVTQAEAKISVFDHGFLYGDGIFEGIRAYHGRIF KCKEHLDRLYESAKTIMLNIGISKGEMEEVLCSTLRKNNLDNGYIRLVVSRGVGDLGL DPNNCVGASIICIADQIKIYPQEMYEQGLDVKTVAVRRTNPDSLSPRVKSLNYLNNIM AKIESTQAGVVEAIMLTQEGYVVEGTADNIFILRRGALLTPPLSSGCLEGVTRNAVIE LAKKRGLEVREELFNRHDVYNAEECFLTGTAAELIPVVKADGRVIAEGQPGEIFKDLL KDFRALTLVDGVPINKA" gene 2678897..2680588 /locus_tag="Dhaf_2481" /db_xref="GeneID:7259452" CDS 2678897..2680588 /locus_tag="Dhaf_2481" /EC_number="4.2.1.9" /inference="protein motif:TFAM:TIGR00110" /note="KEGG: drm:Dred_0280 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="YP_002458945.1" /db_xref="GI:219668510" /db_xref="InterPro:IPR000581" /db_xref="InterPro:IPR004404" /db_xref="GeneID:7259452" /translation="MNSNTIKTGIDRAPHRSLLKALGLTDRELSKPFIGVVNSFTELV PGHMHLRQVTEAVKAGIRENGGTPFEFSTIAVCDGIAMGHEGMHYSLASREIVADAIE VMAKGHQLDALVLIPSCDKVVPGMLMAAMRLNIPAIVVSGGPMLPGRFEGNPVTLSTV FEGVGQVHAGKKDEAWLHELEAKACPTCGSCAGMFTANSMNCLTEALGMALPGNGTIP AVYSERLVLAKETGYQVMELYRQDLKPRDIVTQSTLKNGVAVDMALGCSTNTILHLPA IANEGDIDWDLGKVNEVSEKTPQICKLAPASETPLAALHEAGGVSAVLKQLLDAGLID GSTMTVSGVTMAERLKDAKVVDTEIIRPQSNPFSQRGGLRILFGNLAPEGAVIKQGAL SSQDFVFEGSAKVFNGEVPAAEAIRNLEIKAGDVVVIRYEGPKGGPGMREMLGPTATL AGMGLDSDVALLTDGRFSGASRGLSIGHVSPEAALGGDIALLKDGDKIRIDIGKGRLE WIVSEEEREQRRQEFAAMAVKPDHLKPELRQGYLGRYAYFVQSASKGAALRRVKE" gene 2680595..2682280 /locus_tag="Dhaf_2482" /db_xref="GeneID:7259453" CDS 2680595..2682280 /locus_tag="Dhaf_2482" /EC_number="2.2.1.6" /inference="protein motif:TFAM:TIGR00118" /note="KEGG: drm:Dred_0281 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein" /codon_start=1 /transl_table=11 /product="acetolactate synthase, large subunit, biosynthetic type" /protein_id="YP_002458946.1" /db_xref="GI:219668511" /db_xref="InterPro:IPR000399" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="InterPro:IPR012846" /db_xref="GeneID:7259453" /translation="MGNEKESTTYATGAALLLDSLVQEGVEVMFGYPGGAVLPIYDAL INSPIRHLLPRHEQTAIHAADAFARVSGKVGVCLATSGPGATNLVTGIANAYMDSIPV VILTGQVPTSLLGTDSFQEVDITGITLPITKHSYLVKDPRQIPRIVKEAFYIASTGRP GPVLIDLPKNVLAATDVRPAPAELNLKSYKYFTKGNAGQIEEAARVIAQSQRPVLYAG GGVITAGASEILQQVVERANLPVVTTLMGIGSLPTNHPNVLGMVGMHGTVTANYAVDD CDLLIAIGVRFDDRVTSGLGHRFATKAKIIHIDIDPAEIGKVARTKVPIVGNAKLVLE ELLSKVSKPEISPWWEQIRLWQEEKLKTDNPNLNPQVIIETLGEIAGEETIVTTDVGQ HQMWAAQGYPVPAPRHFITSGGLGTMGFGLPAALGAQVAAPESTVFLVTGDGSFQMSI QELATAVQYQLPVKIILMNNGVLGMVRQLQMVFCDERYSQIQLTANPDFIKIAEAYGI RGIRVTETSEVRNALLEAINHPGPVLMDFIISEDEVVSPMVPPGKGLTEMLGW" gene 2682286..2682765 /locus_tag="Dhaf_2483" /db_xref="GeneID:7259454" CDS 2682286..2682765 /locus_tag="Dhaf_2483" /inference="protein motif:TFAM:TIGR00119" /note="TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: pth:PTH_0528 acetolactate synthase 3 regulatory subunit" /codon_start=1 /transl_table=11 /product="acetolactate synthase, small subunit" /protein_id="YP_002458947.1" /db_xref="GI:219668512" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004789" /db_xref="GeneID:7259454" /translation="MLHTLAVLVENNPGVLTRVAGLFARRAYNINSLSVCQTEHPGIS RMTIVVDGDDTVIEQVSKQLHKLVVVHKVTDLTNETVVDRELALIRIKVKADTRLEVL QIVDVFRGRVVDMGRSNLTVELTGDEEKIDAFVKTIRPFGLMELVRTGKIAITRLES" gene 2682997..2683998 /locus_tag="Dhaf_2484" /db_xref="GeneID:7259455" CDS 2682997..2683998 /locus_tag="Dhaf_2484" /EC_number="1.1.1.86" /inference="protein motif:TFAM:TIGR00465" /note="catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis" /codon_start=1 /transl_table=11 /product="ketol-acid reductoisomerase" /protein_id="YP_002458948.1" /db_xref="GI:219668513" /db_xref="InterPro:IPR000506" /db_xref="InterPro:IPR013023" /db_xref="InterPro:IPR013116" /db_xref="GeneID:7259455" /translation="MAKMYYDSDASLELLQGKTIAVMGYGSQGHAQAQNLKDSGLNVV IGLRADSRRWKQAEAAGLKVATVAEAAAQADLIQILLPDERQASVYEKEIKPHLTAGK CLVFSHGFNIHFGQIVPPADVDVFMVAPKSPGHLVRRTYEEGAGVPGLIAVHQDASGR AYDLALAYAKGIGCTRAGVLETTFKEETETDLFGEQAVLCGGVSELIRAGFDTLVEAG YQPESAYFECLHELKLIVDLIYEGGISRMRYSISDTAEYGDMMIGKRIITDETRKEMK KVLAEIQDGTFAKNWLLENQINRPSFNAIERKDAEHPIEKVGAELRAMMPFIKKPGE" gene 2684224..2685498 /locus_tag="Dhaf_2485" /db_xref="GeneID:7259456" CDS 2684224..2685498 /locus_tag="Dhaf_2485" /EC_number="4.2.1.33" /inference="protein motif:TFAM:TIGR02083" /note="catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase large subunit" /protein_id="YP_002458949.1" /db_xref="GI:219668514" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR006251" /db_xref="InterPro:IPR011823" /db_xref="InterPro:IPR011826" /db_xref="GeneID:7259456" /translation="MRDMAMTITEKILAEHAGLDKVVPGQLITAQLDLALANDITGPV SIREFEKFGVETVWDKTKVALVPDHFTPNKDIASAELSKALREFAKKQGIVHYWEQGR VGVEHCLLPEQGVTLPGDVIIGADSHTCTYGALGAFATGVGSTDLAAGMATGEAWFRI PESIKFIFKGTNFQPWVSGKDLILYTIGKIGVDGARYRSMEFTGEGIAALSMDGRLTM CNMAVEAGAKNGIIPPDEKTLAYVNERAKRPYKVYHSDPDAQYVEVYEWDVADIPLQV AFPHLPENAKPVSEGKGIKIDQVVIGSCTNGRLEDMQVAAQILKGQKVHGDVRLIVIP GTQDIYKQAMQEGLIDIFIDAGAVVSTPTCGPCLGGYMGILAKGERALSTTNRNFVGR MGHPESEVYLSGPAVAAASAVTGEISHPEEVL" gene 2685498..2685986 /locus_tag="Dhaf_2486" /db_xref="GeneID:7259457" CDS 2685498..2685986 /locus_tag="Dhaf_2486" /inference="protein motif:TFAM:TIGR02084" /note="TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: csc:Csac_1332 3-isopropylmalate dehydratase small subunit" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, small subunit" /protein_id="YP_002458950.1" /db_xref="GI:219668515" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR011824" /db_xref="InterPro:IPR011827" /db_xref="GeneID:7259457" /translation="MAKAWKFGDDIDTDVIIPARYLNQNTPEHLAAHCMEDADANFAK EVKSGDVIIGGKNFGCGSSREHAPVAIKAAGVKAVIADSYARIFYRNSLNIGMPILEC PEAVQGIEAGDEVSVDLETGKIVNLTRNTEFEARPFPPFMQDLIKAGGLIPYVKGRQE HA" gene 2685979..2687037 /locus_tag="Dhaf_2487" /db_xref="GeneID:7259458" CDS 2685979..2687037 /locus_tag="Dhaf_2487" /EC_number="1.1.1.85" /inference="protein motif:TFAM:TIGR00169" /note="catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="YP_002458951.1" /db_xref="GI:219668516" /db_xref="InterPro:IPR001804" /db_xref="InterPro:IPR004429" /db_xref="GeneID:7259458" /translation="MPKIAVLPGDGIGQEIIPQAVRVLKAVLAETDAEFEFQDYPIGG AAIELVGKALPDETLQGCREADAVLLGAVGGHQWDHLPASERPETAALLGLRKGLNFY ANIRPVRMIPSLLATSTLKENVLDGVDMVVIRELTGGVYFGEKGRSDNPRSAYDKMTY SEEEIRRILIQGFETAMLRSKKLCSVDKANVLETSRLWREIANELAKEYPEVELTHMY VDNAAMQLVRNPKQFDVIVTENMFGDILTDLASMLGGSIGMLSSASLSGTQGMYEPAH GSAPDIAGKNLANPLATILSAALMLRYSFGMEAEALRIESAVEKVLEQGYRTGDLAQA GDKVVGTIEMGDAVLAAL" gene complement(2687202..2688590) /locus_tag="Dhaf_2488" /db_xref="GeneID:7259459" CDS complement(2687202..2688590) /locus_tag="Dhaf_2488" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_2966 4Fe-4S ferredoxin, iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002458952.1" /db_xref="GI:219668517" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259459" /translation="MAVIKKADPVRHPDSPKKNLLDNRVIKAMLKSRWFPGIIQWPVL FVFALIVFELMAGPGSAHDNFGTAGTWVLWWPLIPIIFLLLGRFWCAICPFATVSDWI QKFVGNNRPVPKFLKKYGIWLIDIFFILITWADHTFGVVESPRGSGVLLLIITTGVII SGAFFERRTWCRYLCFLGGLSGNYARSGSLELHATPEKCAQCTTQSCYKGNGKVAGCP MFEFPRTMDSMARCNLCANCIKTCPNDSIQLSTRVPTKGLWFIKKPKFEESFLAIIIM GIVFVQNITMLEVWEKMLASLENFVGTDNYFVTFTITFIIAMAIPVFALFASSYFAKL SNKKSTIQNFAIFGYSLIPLDLAGHIAHNLFHLLAEGKSILFTFLALFGVETHGASAA IFSNSTIQILQFGLIGLGTLGSIYTAYRISKYNFAAEGKTFASFMPFAVLSVILGIVN VGLFILPMAMRM" gene complement(2688624..2689073) /locus_tag="Dhaf_2489" /db_xref="GeneID:7259460" CDS complement(2688624..2689073) /locus_tag="Dhaf_2489" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458953.1" /db_xref="GI:219668518" /db_xref="GeneID:7259460" /translation="MKKKKILIGGISLVLLFPFASVAIADEVTSAASQSTVQIVAQTA AQAQSPTEANGHITVGMAGMKGGSMDSNSTEIDLNETSHDMDMDKPDVQEGGQKAEED GHGQSEKTQGKEHGEEEPAGVNWPVVWGFLGINSLVIVSAGILKFMK" sig_peptide complement(2688624..2688701) /locus_tag="Dhaf_2489" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 26" gene 2690136..2690474 /locus_tag="Dhaf_2490" /db_xref="GeneID:7259461" CDS 2690136..2690474 /locus_tag="Dhaf_2490" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: lsp:Bsph_2243 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002458954.1" /db_xref="GI:219668519" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7259461" /translation="MSIRDNIKGGALTETTFLVLLAVYQPNHGYGIMRFIETATKGRV TLGAGTLYGAINALVKKQWIAPYGDEADGKKKAYIITNTGKQKVAEELRRMDEVLRLA STIIREDEDQ" gene 2690471..2691100 /locus_tag="Dhaf_2491" /db_xref="GeneID:7259462" CDS 2690471..2691100 /locus_tag="Dhaf_2491" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_2245 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458955.1" /db_xref="GI:219668520" /db_xref="GeneID:7259462" /translation="MSKTFFRYFFDFLDGQEKWLNSMAGRGYRLKKCGRIAYTFDQCQ PNEYEYAVEFVGEKAYTKAKAYREYLESMGFRTFTKNINLNYSLGKVRWRPYGKGMGQ IATAPGGYNKELLILEKKRDGQPFELHTDVSDTLHTYKNVVYAYAWTVLLLLGLVAIT FIPNVSSMSGTMTWVFRMLLTGLGVLFIIPAISYASLVGRLKEESKLFE" gene 2691145..2692053 /locus_tag="Dhaf_2492" /db_xref="GeneID:7259463" CDS 2691145..2692053 /locus_tag="Dhaf_2492" /inference="protein motif:PFAM:PF08279" /note="PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cpy:Cphy_0991 helix-turn-helix type 11 domain-containing protein" /codon_start=1 /transl_table=11 /product="Helix-turn-helix type 11 domain protein" /protein_id="YP_002458956.1" /db_xref="GI:219668521" /db_xref="InterPro:IPR001034" /db_xref="InterPro:IPR013196" /db_xref="GeneID:7259463" /translation="MKIDRLIGIITILLQKERATIPQLAERFEVSCRTIQRDIDAIGQ AGIPIVSRQGYGGGLSIADGYKLDKTVLTKKELQAILTGIRSIDSISKTTYGQTLIEK FANGKAAVLAEQDMILIDLASWYQDSLSDKIEQLRQAIFNREKVFFVYYSDKGESERL IEPYLILFKWAAWYVYGYCLTKNEYRLFKLNRLWKLKNTNLTYIPRNIPEGKLEFERY FQTEEIRLTALFDARAKYRLIEEYGPECFTVSEPDKLLFQRSFSNPEYLLQWLLSFGD RVRVIEPPELKANIQEHAKNMLRQDD" gene 2692113..2692505 /locus_tag="Dhaf_2493" /db_xref="GeneID:7259464" CDS 2692113..2692505 /locus_tag="Dhaf_2493" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbt:CLH_2446 glyoxalase family protein" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_002458957.1" /db_xref="GI:219668522" /db_xref="InterPro:IPR004360" /db_xref="GeneID:7259464" /translation="MLKLDAIGLFVKDMETMVSFYRDVMGMKTDWAGEANAELYSGEF RLIMFSRKDFEEMTSKSYTYPTGLNGTVELAFDVADFAEVDTEYARIVNAGATPVFPP TDEPWGQRTSYVADPDGNLIEISSFVKA" gene complement(2692737..2693900) /locus_tag="Dhaf_2494" /db_xref="GeneID:7259465" CDS complement(2692737..2693900) /locus_tag="Dhaf_2494" /inference="similar to AA sequence:KEGG:Exig_3014" /note="KEGG: esi:Exig_3014 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458958.1" /db_xref="GI:219668523" /db_xref="GeneID:7259465" /translation="MNKNDVASIRKEFKVDNTKLKIAEVVSIYVKGDLKQVIGIEKEY FERMDAQKQDLYLKNFKKLLTGPLDAKVFELEFTDNKLGQNPNQRALIETLQPHHFAE GTEEIAHRIIENCHYEGDYMLTFLRGEVYKPSKRSSAGDDSGLDDVVFSFEFFMGSIN PVMLPKTALKFDFEDRVFKADIPMDVTINLSAPLDGFMFPAWHDDAADVNKVVYYSSK ANAPNPEFLSQVLGCDFQRTAQTEKEQFLEIVQEVAGKEIEAEKIADIYENLNTLITR NEEEENPEAASVGVKDMEKILQASGVGNTQGLETAFLKVTGTEKYEFKAANIAPNFKG KSLKIENNTVSISVNPQDLRYIKQVKRDGKRYLLIEIDETVNLEGFELSTETF" gene complement(2694043..2694489) /locus_tag="Dhaf_2495" /db_xref="GeneID:7259466" CDS complement(2694043..2694489) /locus_tag="Dhaf_2495" /inference="similar to AA sequence:KEGG:Dred_0591" /note="KEGG: drm:Dred_0591 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458959.1" /db_xref="GI:219668524" /db_xref="GeneID:7259466" /translation="MKDERIQQAQNKVRSELAVITYLAIVLSFLVKTLAFDMSLAECL TEYLILILFPLYQFIRMHTMKISLYSSPGSKQYRHNLLFVAAILLITAALSVFSMLNR STIVDFHKPVLFLVLFMVLFVVVYFIANGYNRHKAHKYEAEFDEKD" gene complement(2694479..2694688) /locus_tag="Dhaf_2496" /db_xref="GeneID:7259467" CDS complement(2694479..2694688) /locus_tag="Dhaf_2496" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3479 transcriptional regulator, XRE family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002458960.1" /db_xref="GI:219668525" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7259467" /translation="MKNLRLKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQ LCIAICKALGKTLNDLFWEDDKNER" gene complement(2694967..2696196) /locus_tag="Dhaf_2497" /db_xref="GeneID:7259468" CDS complement(2694967..2696196) /locus_tag="Dhaf_2497" /inference="protein motif:PFAM:PF05975" /note="PFAM: ABC transporter EcsB; KEGG: oih:OB3176 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC transporter EcsB" /protein_id="YP_002458961.1" /db_xref="GI:219668526" /db_xref="InterPro:IPR010288" /db_xref="GeneID:7259468" /translation="MNNVHRLFRHRLFADWKFQYSIWKLVVDWIVALYIVIPGLALFL DTYVDWWQEPPSLFFALPLTILLPIAVVFCRSGTLRIFVEEADQLFLFQHRSWLKGLV AYSIAFQILANLLITGLLAFLCAPFLLAVHHVDLAGFFWFFLLLLICRINAGLFKQCL QHRWEGWRYILAQIPLLGFYTALFWAALASIGNRPLYFLLTFLLLLLLILLIFYRLSL PATLLKDISLAQTEKMKFANVFLKYMGTYTKKPIRLKKHPWLFKNSGRLFKERSADKV LTEIGLKGFLRHRSNMLFYLQVVGIYGAFLTILPSLWQWILWGGAIFFLASLGKLQWL EWINSPFVSLFVLDRKIKQKAAGRFLFFFICPGLIFLGLAVTFLTQQWFLGLVLLPVG IFLSKITADSLTFFQSN" gene complement(2696193..2696903) /locus_tag="Dhaf_2498" /db_xref="GeneID:7259469" CDS complement(2696193..2696903) /locus_tag="Dhaf_2498" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB3175 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458962.1" /db_xref="GI:219668527" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259469" /translation="MNLVQANITSGGYLKKDLILKDISFEVKPGELVGLIGPNGAGKS TILKAIMGQLPYLEGKVEFENAHTHYAYIPEQPVLYDNLTLWEHLEFAAAVGKMSQET FVPRVEELLKLFRLHKEKHQLPVTFSKGMQQKVMLILGFLLRPPLYIVDEPFIGLDPH GMRDFLQLVDQVRQDGAGILMSTHSLDTAEKICTSFILIHEGTIISQGNLEDIRRQSR LPEGSLFDCFINLLEIQP" gene complement(2696939..2700187) /locus_tag="Dhaf_2499" /db_xref="GeneID:7259470" CDS complement(2696939..2700187) /locus_tag="Dhaf_2499" /EC_number="2.7.11.1" /inference="protein motif:PRIAM:2.7.11.1" /note="KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="Non-specific serine/threonine protein kinase" /protein_id="YP_002458963.1" /db_xref="GI:219668528" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR000577" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR007527" /db_xref="InterPro:IPR013663" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7259470" /translation="MPFPIINELEIRTLASSKKAYELGVAYALKGRVSQLSHDGERNL ISAVVMGTWLYEVEIILSRNGSIHSCHCTCPAFAEYPGACKHVIAALKAVQRKLTGSQ PRLAVVKESVADFMALFANPDPKSVRETLNLEFELQIEIHRRVHAQLQIKVGQNRLYI VKNLEEFLAAIQGGHLLTFGKQFTYDPFLHTFSDEDQTIIHMLQEMSKQYEAFNEQRS FHYASPFSQKPFVLTEYYLGKFFDALGAKHFSLALTSSRGGLPELSPSLQIIRQDIPL DFAIQSKEQYLTLALQSKLPLQLTEDGRYYLYDQNIYQVSSEQQSFLPNLIKVMSGKN LQTLTFPDHQKDFFASEAIPLIEQMGSVAIDPQLAEKFVREELQARIYFDRMGDYGIR ARLEFHYGDHIINPFTSQTGANRQEAADAQILIRNIERERKILGIFEQAEFIVSQGVI SLEDDEKLFAFITTWLPQLQDCAETFYSDDFKLTIRTSTSFSGRVRLDESSDLLEISF QYSDIDRDELTHIFHSLQVKRNYYRLRDGSFLDLRQPELESMAMFLEHLNLRGEDLNE QTLRLPKFRAMYIDSFLRQANLPGIQRNKAFKQLVQSILEPQDGEYDPPPSLMSVLRD YQKTGFRWLKTLAAYGLGGILADDMGLGKTLQTLAFILSEKLSSPALVVAPTSLIYNW QAEGEKFAPGLHILVVDGSPQERQEQLKGLDQADLVVTSYALLRRDIETFAQVDFSYC FLDEAQNIKNPQTLNAKSVQRIKAKSYFALTGTPIENSLAELWSLFNFCLPGYLLSHQ EFQKKYSTPIIKDGDPLALRELSRHIKPFILRRLKKDVLKELPPKIETEIKAALTEEQ RKIYLAYLQQTKSQIAQELATHGFAKSQIQILAALTRLRQICSHPGMFIDNYTGESGK MLLFQELLEDSLAGGHRVLVFSQFTSMLDIIGEYLHSENIDYFYLSGSTKALERSRMA ASFNNGEGQVFLISLKAGGTGLNLTGADTVIHFDPWWNPAVEDQATDRAHRIGQQNSV QVIKLLTQGTIEEKVNALQAKKKKLIDSVIQPGETMLSKLTEKELRELFELN" gene 2700638..2701441 /locus_tag="Dhaf_2500" /db_xref="GeneID:7259471" CDS 2700638..2701441 /locus_tag="Dhaf_2500" /EC_number="1.5.1.2" /inference="protein motif:TFAM:TIGR00112" /note="KEGG: drm:Dred_1168 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="pyrroline-5-carboxylate reductase" /protein_id="YP_002458964.1" /db_xref="GI:219668529" /db_xref="InterPro:IPR000304" /db_xref="InterPro:IPR004455" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR011128" /db_xref="GeneID:7259471" /translation="MKKISFIGAGNMAEAIIKGLMVTGSYEIRVTNRSNQAKLAQMKE DYGVIPVSFREAVKDSEIILLAVKPKDVGEALAQIREGISSNQLLISVAAGIPLALLE KHLPHCPIIRAMPNTSSAVLHSMTGLVKGQGVNEAKQRDVEDIFGAVGKYIWITEEQI NPLIAMSGSGPAYFYLFTEALVKAGVDMGFSQEVAENLAKETLMGAAKMLAQSGKSPG ELRVAVTSPKGTTQEALEVFREQGLEELVAQAAKACKHRAQAMEREYLG" gene 2701438..2702547 /locus_tag="Dhaf_2501" /db_xref="GeneID:7259472" CDS 2701438..2702547 /locus_tag="Dhaf_2501" /EC_number="2.7.2.11" /inference="protein motif:TFAM:TIGR01027" /note="KEGG: hmo:HM1_2703 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein" /codon_start=1 /transl_table=11 /product="glutamate 5-kinase" /protein_id="YP_002458965.1" /db_xref="GI:219668530" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001057" /db_xref="InterPro:IPR002478" /db_xref="InterPro:IPR005715" /db_xref="GeneID:7259472" /translation="MSDLRRIVIKVGSSSLNHPEGGLDDQAIQRIAGVIAGIRQLGVE CVLVSSGAVAAGVGKLGLKTKPKDMAGKQAVAAVGQGVLIEKYALALEARGLVCAQVL LSRLDLAEASRYRNAQNTLEQLLRYQVIPIINENDTVAVEELCFGDNDRLSALVAGLV HGDLLVILTDVDGLYSANPKLNPQAELIEEVEDLTQVMHIAGGAGSSMGTGGMVTKLK AAEITTRFGMGMFLLHSKRMEEIIELIQGERPLGTYFFPAAHRIMGKKRWIAYGGLSE GSIFIDEGAVKALLKGKSLLASGITGIDGVWERKELVRINNPDGIEVARGLVELSSEE LEKVRGKHSEEMLATIPNLEGEEVVHRDNMTLMIE" gene 2702667..2703920 /gene="proA" /locus_tag="Dhaf_2502" /db_xref="GeneID:7259473" CDS 2702667..2703920 /gene="proA" /locus_tag="Dhaf_2502" /EC_number="1.2.1.41" /inference="protein motif:TFAM:TIGR00407" /note="Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway" /codon_start=1 /transl_table=11 /product="gamma-glutamyl phosphate reductase" /protein_id="YP_002458966.1" /db_xref="GI:219668531" /db_xref="InterPro:IPR000965" /db_xref="GeneID:7259473" /translation="MDFAPELITIGQKAKDAARKLAYAGTAAKNKALLAMAEALLNHE QKILEANRKDVEAAIQKGTKKSLVNRLALTSEGIRQMSDALKEVVNLGDPVGEGEFWT RPNGLRIQRTRVPLGVVAMIYEARPNVTVDAAALCLKSGNAVILRGGSEAIESNKILS KVIAGAAESQGMPTACIQLLENTNRQWVQQLMKMNGYVDVIIPRGGAGLIETVVKEAT VPVIETGTGVCHAYVDGEADLAKGVSIVFNAKTQKPGVCNALEAVLVNEAVAQEFLPL LGEKFRDYGVEIRGCEKTCAILPYAAKAKEEDWGIEHLDLIISAKVVQGVDEAMDHIY QYGTKHSETIITENYTTAQRFLNEVDAAAVYVNASTRFTDGGRFGFGAEIGISTQKLH ARGPMGLQALTTMKYMVYGEDHIVT" gene complement(2704122..2704733) /locus_tag="Dhaf_2503" /db_xref="GeneID:7259474" CDS complement(2704122..2704733) /locus_tag="Dhaf_2503" /inference="similar to AA sequence:KEGG:CLH_2038" /note="KEGG: cbt:CLH_2038 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458967.1" /db_xref="GI:219668532" /db_xref="GeneID:7259474" /translation="MLKDKKIMPGVTAVIILIVIAAISISFISGPKEGEYKIPIEPTI AEWSSDQNMGAHLPILDYASDNIVIFHSYFGLFVYNLDSQKLIRSLNLQSIGCADDSC VVSVSKDENTVQLHPGDSESMYVYTISKNNLVKAAYKPMEEPFDGLVSILDVMDFDKI GNYSHNAVIFNNGEFGCLRASEWTVSSLTYVRGDRVHELFKQK" sig_peptide complement(2704122..2704187) /locus_tag="Dhaf_2503" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.680) with cleavage site probability 0.578 at residue 22" gene complement(2704847..2706067) /locus_tag="Dhaf_2504" /db_xref="GeneID:7259475" CDS complement(2704847..2706067) /locus_tag="Dhaf_2504" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_0079 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458968.1" /db_xref="GI:219668533" /db_xref="GeneID:7259475" /translation="MKKFAIRALSFVAFITLGLLLSVPVFADSVNTSKDDIISTVEKA IALFYENKDMGANNDLSKIMDTDISSYLADKATTHQYATSLNQNDKENYSVQVKLLEN EMSEDFLKLKFQVITTYNYASHYTALGERPDISTVSEVVYVVYDRVKNLITDFYCPTN YYDIAVRDEDPNISMEMATRSAYPFAITANITARQEMLKNDIYKVYEEQNSEVSSITP SRTSFLSPNAILAYARANYDKINPSSGNGTVPYFDFSVYPGNWDCTNFVSHALLAGGA NVYDTGGSGISGTGWYFRSESNRSSSWSGVPELYNFLISNTHPNTPAGYSYAYSNNPG LWSVGDIVQFRFSGNSVYSHSTIITRKVYSADQSRAYAYVTGRSDPYNYNDNDPVDNM APGGSKRTIYVYNY" sig_peptide complement(2704847..2704930) /locus_tag="Dhaf_2504" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 28" gene 2706517..2706645 /locus_tag="Dhaf_2505" /db_xref="GeneID:7259476" CDS 2706517..2706645 /locus_tag="Dhaf_2505" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458969.1" /db_xref="GI:219668534" /db_xref="GeneID:7259476" /translation="MDKRILESVKEFYKNVKGQEFFLDLIPYPVNLPEEQEGNYRN" gene 2706719..2707717 /locus_tag="Dhaf_2506" /db_xref="GeneID:7259477" CDS 2706719..2707717 /locus_tag="Dhaf_2506" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458970.1" /db_xref="GI:219668535" /db_xref="GeneID:7259477" /translation="MTGSTLTILLSFGTGILSLVGLMSIFISMNSQHNVQRSREILWT LAALPYEKNLFHEKGTIGKEVFRSFILYEQIINQKHGFSKIIIQFVQYALGFCILIWT TMGFSLIMSERPLFEKAFIFSGWLLTVSFTLYFILKIFEELKSTSKVGRLPTVEEIVD ADRVNLGVSVVTLAAISSCIRMVDSKVYLGFPLPFKNLRINLSFFDSKEGGFPNIGSR LTFKECMSSYTRLDSEKFEILEDDYCWYPVKILDHHQNRHKDILITLEILSQQGLVTA EFYIEEFSGKKDTSLNIYPYSFEERFINRVSTLDPFSINQIKSSKEVKKDGNSCLN" gene 2708151..2709959 /locus_tag="Dhaf_2507" /db_xref="GeneID:7259478" CDS 2708151..2709959 /locus_tag="Dhaf_2507" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: gur:Gura_0801 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002458971.1" /db_xref="GI:219668536" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259478" /translation="MSKEKKEELKRERLSRRDFLKNAGIMTAGTAVGAGFLLSGCSQD AQGGTEAKLQAAEAKPWLPEKWDKETDVVVVGTGCGLAAAIEAKNAGADVIILEKNDW VGGLYKTAGGHAILGGTRIQKEAGMQDSLEDWFEDEMKASGYRGVPELIRTYVERGPE LIEWMESMGFKWYPTVGNSSPEVHRVGRSHYPAANPDVYDAKPNSPMSFGLAWTTVWE KKLQEMGVPILFKHRMKKVYREPGGPVLGVSAETPEGTINIKARKGVILCTGTWTDNH RMAQAWDPRVVGPDCFGDGGTPADGTLFVDSAGDGHFAAAEVGAGFSDMSFTSYIYLF YGSRSYWGWEPPDFKTAAYYADGKGIPRPAAFFERVILVKNDGVRYINEMEGARKADP AKGEAGSINENPEWPYTAKYLSLPHPRNVWAIADSESAAALKWPIEDLKNPNPKKGLM FDPACIAIADSIPELAEKMGIPAAELEKTISRYNGFVGAGKDEDFGKTALFKIAKPPF YGLKASLIRHTQRNGVRVNTKSQVIEQADQLAGYSGKAVDESISIDQEKVIPHLYAAG ELGNVMGWRRPHGSLGNYATVARIAGENAAKESSWE" sig_peptide 2708151..2708294 /locus_tag="Dhaf_2507" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.760) with cleavage site probability 0.308 at residue 48" gene 2710209..2710520 /locus_tag="Dhaf_2508" /db_xref="GeneID:7259479" CDS 2710209..2710520 /locus_tag="Dhaf_2508" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458972.1" /db_xref="GI:219668537" /db_xref="GeneID:7259479" /translation="MPEVLSRSDFQEDCVRDHPNYGYFVGKNRRSFYKLKSALNESSL NPLIIKDADHENAFFAKVLKSEADQFVELTKQYEFKRARLSPSVLDAIKWVFGDGWLT E" gene 2710778..2712868 /locus_tag="Dhaf_2509" /db_xref="GeneID:7259480" CDS 2710778..2712868 /locus_tag="Dhaf_2509" /inference="protein motif:PFAM:PF00158" /note="PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: tpd:Teth39_0788 Fis family GAF modulated sigma54 specific transcriptional regulator" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002458973.1" /db_xref="GI:219668538" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7259480" /translation="MPDTKENLHDAHNLILTNTGWEQLLECKKFFLKNHTLDPKEYAC IRLEVAESWLRSHDLGVNPYKSSLAEHLNSNEIARILAENKDLIEITKAVFVDLKIKD IMTSNYALYLFDKNGVLLSHEGEKIKLISADYPESSIVGQVWSEATVGTCAHVLSMHL KKPVYIVGPEHYCTVFQNSCTSAAPLTNEDNEIIGYLVVSYHIDFPLSHDSYYLSTYP LGLITAMAVAVENKLRFTKSYQLLKSAHHMQEVILSVIEEGIIITDNRGKIITINKEV VNIFNTAEEEIIGRTIDRFLGPQIGEAVRNNETVDIEEAICSNNHDKSYLVLIRPLDK HGNYPNGAVLRVNPMEIINALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSN ENILLTGESGTGKELFAQAIHNAHRPQGPFIAVNCAAMPRELIESELFGYEGGSFTGA ERRGRAGKIELAHGGTLFLDEIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLV AATNKDLERMSHENLFRSDLFFRLSILSIQLPPLRKRDNDVEVLANYFIGKYCAKIKR KAPLISEEALEVLKSYGWPGNVRQLENSVIYAVNLAQGDLIQCRHLPESLYAASSSPA ENYRDPPGMTGSYTLENIYKIDVMEKILIENALYKTRNNITKASELLGMAKSTLYRKA KELNIDMGTFKNSD" gene 2713142..2713354 /locus_tag="Dhaf_2510" /db_xref="GeneID:7259481" CDS 2713142..2713354 /locus_tag="Dhaf_2510" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: rca:Rcas_3422 FHA domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458974.1" /db_xref="GI:219668539" /db_xref="GeneID:7259481" /translation="MCFRPPTFTKLMTKCPQCNVFNPPANKTCKKCGAELPEPEAEEN AAGPAGPQRAPQRAPQKPEKPDSNKE" gene 2713444..2715774 /locus_tag="Dhaf_2511" /db_xref="GeneID:7259482" CDS 2713444..2715774 /locus_tag="Dhaf_2511" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: glo:Glov_0899 formate dehydrogenase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002458975.1" /db_xref="GI:219668540" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7259482" /translation="MINKYSKDLYKEDWRWQEGEYEVTRTSVWTGPGCHNGCGVLCYT KDGKLEKIEGDPNFSYNQGRLCLRCINMVEQIYNNDRLKWPLMRVGKKGENKWKRVSW DEAYDWIEAKHKEISQKTGPQGIVSLVGTGRNCMWQPAMITRAVFGSPNLSFGFLSAD SCYQPRMTANLIKQGDCWVLDASQFHPLRYDNPEWKVPEVVVVWGNEPLASNGDGFVG HWLVDLMKLGTKLIVIDPALTWLAAKADLWLKIRPGTDCALALGFLNVIINEDLYDHD FVEQWTYGFDELVERVQEYSVEKAAEITWIPKEQITEAARMYAKAKPAGIQWGLAIDM QIAGMEASAAISDMVAITGNLDVPGGNILLRYAYNSSKKYGCGLECISEEMLQKRIGT YESAIHESGYTPFIPPDKLLETMESGKPYPVQMLWVHGSNPIANMAGEAPRVYAAWKN VPYTVVVDYYMTPTAVAFADLVLPAAMSVERDSYRSWWQPLRAITKAAEPYFESKADE QIVLDLGKRINPEYFNKYKDVRDLLTDMLYDDGNGVDYDFEALTHKVYDWWDWNHTYK KYEKGLLRQDGQPGFVTATGLYEVSSPLFDVWGFDPLPHHMEPYEGPYSTPELMKEYP FILTTGHRQIGLFHSEHRQLPTMREVHPQPEMDINPETAQKLGLQEGDWAWIENKRGK CKQQVKFNYGLDPKVVRARHGWWFPEKEGAEPVLFGVFDSNSNNLTTMGVHGPTHYGA PYKSTICKVYKVEPENDQVTPTEIVTRLGGFGYVKR" gene 2715761..2716105 /locus_tag="Dhaf_2512" /db_xref="GeneID:7259483" CDS 2715761..2716105 /locus_tag="Dhaf_2512" /inference="similar to AA sequence:KEGG:Glov_0900" /note="KEGG: glo:Glov_0900 putative oxidoreductase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase iron-sulfur subunit" /protein_id="YP_002458976.1" /db_xref="GI:219668541" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7259483" /translation="MSKDNAQYGILIDYEYCTNCHTCEVACKKELGLPVGQFGIKVLE DGPRENVYGKWSWTYLPLPTELCNLCEDRVKEGRLPTCVHHCQSGIMYYGTLEELSKK LVEKPNMVLFSR" gene 2716140..2716277 /locus_tag="Dhaf_2513" /db_xref="GeneID:7259484" CDS 2716140..2716277 /locus_tag="Dhaf_2513" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458977.1" /db_xref="GI:219668542" /db_xref="InterPro:IPR001876" /db_xref="GeneID:7259484" /translation="MSRQEKGGFRPPPTEKLIWKCSQCETFNSTKEPACKKCGAEKPK K" gene 2716422..2717999 /locus_tag="Dhaf_2514" /db_xref="GeneID:7259485" CDS 2716422..2717999 /locus_tag="Dhaf_2514" /inference="similar to AA sequence:KEGG:HM1_3016" /note="KEGG: hmo:HM1_3016 L-lactate permease family protein, putative" /codon_start=1 /transl_table=11 /product="L-lactate permease family protein, putative" /protein_id="YP_002458978.1" /db_xref="GI:219668543" /db_xref="GeneID:7259485" /translation="MGMGFLSIMTLLPIIVIFLLIAWRNTPVHIASLIGWALCVMIAL AFFSTSLAVSIRASLAGVVQSFPVTIVCAATLLQICFMEETGALRRICTFLKTVAITN KASQIMIINLGAGTTLVSAGATPVAVLPPVLRGLGYSNFMAIALPALGFDALCTYSML GAPLVAFSDITGVSLIEASQIFALYLPIISTLIAFAMLYLVGGTELMKAGFFPALSGG LIAGLTAVAIAYVPALHPGIVLTGVIAGVLVILVECLYLKVKGYKILDRSVLNDEDLQ VEKERRLLAAFSPWLLTISLLFFVNFYQPVHDFLTLRLGMPVQIIPGQKIYLRVFWNA YFWVLVGTIVSAIWLKPTGTQIKGSLSKFGKRAPKPLISLTVFFALGLLMNNTGLQPV GEVWQVTDAMHNMVSVLALESARIFGWVYPLIVAPLGLFGGFVTSSEAAALGMFAKYN FIAAKELFLNPLVVAAATGIGAGLASVISPGKLQNAAAVIDAVGEEQAVIRKVFPICL GMIIVASLLCFVFSKFI" sig_peptide 2716422..2716580 /locus_tag="Dhaf_2514" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.658) with cleavage site probability 0.542 at residue 53" gene 2718234..2719370 /locus_tag="Dhaf_2515" /db_xref="GeneID:7259486" CDS 2718234..2719370 /locus_tag="Dhaf_2515" /inference="protein motif:TFAM:TIGR01575" /note="TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: lin:lin2182 hypothetical protein" /codon_start=1 /transl_table=11 /product="ribosomal-protein-alanine acetyltransferase" /protein_id="YP_002458979.1" /db_xref="GI:219668544" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR006464" /db_xref="GeneID:7259486" /translation="MKYCTMMKTAQILTIALGENGKLLGETQISLYQAPTVDFKTLLA GLLHGLGSQLTDMDFAGIVKAAYSPEVGESEVGKKLHLLVTELKIPLISVWSLDMLGW AAQDCEKGLAVIQNLAQSLWFKASYQWDSCRQIPVCLEEPHILTTEELRKEVELEDNR ILVSGDALPAAEYLKNKERSLPGYYQWHYGLYSVQAVWHQWLESGPDEKFFSLYKIQE KTKARELSAHGSLIMRMMCEEDLKDVMKIELRSFPSPWSPLAFVTELRHNEDAYYFCL YSYGILLGYLGVWLIFDEGYITRLAIHPDFRAKGHGSYLIRQVLEWMKPRGVKRLNLE IRSSNTLACSFYKKLGFLPRATKQAYYTDPPEDAMVMTLDLNCP" gene 2719413..2720753 /locus_tag="Dhaf_2516" /db_xref="GeneID:7259487" CDS 2719413..2720753 /locus_tag="Dhaf_2516" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_3925 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002458980.1" /db_xref="GI:219668545" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259487" /translation="MDNSKRSSMLRKLKILQWPMYVICVLCYMLTLFHRITPAIMGPD LMADLSLGAVAFGFMGMAFTWIYAFAQAPVGTMLDSLGARRGLTAILMIAAIGSLVFS LAENFTVLIIGRILLAVAVSGFLIGGAKIISAWFTTRQYPMLWGIFMGLGSLGSVLGT APLRTLMSFAGWRTALFGIAVFSLILAVVTYILLRDKPAERGLLTPDELHGETAVVAA ISEEAGQEKVPFTAVLKMPVLWLIGLLSLGVNSSSQTFGSMWEGIYLTDALALSKEAS GDILSWYAWGLFAGCILSGAVVRKIGSKKTMVLGCILFLFNWLWIALQPATISITELS FFNFLMGALQMLVISTTFIYIREVMPTSRLGTAMGIVNSFAWIFGAGLFQQIWGIIIN AVSDGIKPYPVYAFQVTLWLQVIMICLGVICSIVLYRKDFGGKEKSVKLTNHAV" gene 2721025..2722053 /locus_tag="Dhaf_2517" /db_xref="GeneID:7259488" CDS 2721025..2722053 /locus_tag="Dhaf_2517" /EC_number="2.5.1.54" /inference="protein motif:TFAM:TIGR00034" /note="catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="YP_002458981.1" /db_xref="GI:219668546" /db_xref="InterPro:IPR006218" /db_xref="InterPro:IPR006219" /db_xref="GeneID:7259488" /translation="MSMNFIKKLPPAEEIIAHLPLSKEVAELRDKRVDEMKKILTNED QRFLLIVGPCSADHEDPVCEYIERLAKVQEKVKDTLLIVPRIYTNKPRTTGEGYKGMV HQPDPEKAPDMCEGIKAIRRLHIRAISEFGMPAADEMLYPENYSYLADVLGYVAIGAR SVENQQHRLTVSGVELPVGMKNPTSGDMTVMFNSLIAAHSNHSFIYNGWEVETTGNPY AHAVLRGAVNANGENIPNYHFEDLIRTAREYERLELVNPAIIVDVNHANSMKCFYEQP RISGEVLYSRRYDSLLKKMIKGLMIESYLEEGRQGIGENIYGKSITDACLGWESTEKL IYSIAENV" misc_binding 2722121..2722233 /note="TPP riboswitch (THI element) as predicted by Rfam (RF00059), score 74.24" /bound_moiety="thiamin/thiaminpyrophosphate" gene 2722323..2723621 /locus_tag="Dhaf_2518" /db_xref="GeneID:7259489" CDS 2722323..2723621 /locus_tag="Dhaf_2518" /inference="protein motif:PFAM:PF01964" /note="required for the synthesis of the hydromethylpyrimidine moiety of thiamine" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein ThiC" /protein_id="YP_002458982.1" /db_xref="GI:219668547" /db_xref="InterPro:IPR002817" /db_xref="GeneID:7259489" /translation="MTQLQEARKGIITPEMVQAAELEGITGEELRQKIAIGEAVLPCN INHQGLRPMAVGKGLSTKVNANIGTSDAYPELAPELSKLEIAVAAGVHSIMDLSTGGD IDEIRRRIIQDSPVMVGTVPLYQVMVDTHKAGRGLVEMTDDEIFAGIEKHCRDGADFI TVHCGVTLEVIQELREQGRVMDIVSRGGSFITAWMLHHQRQNPLFEQYDRLLNIALHY DVTLSLGDGLRPGCLADATDGPQIKELITLGSLVKRAQEAGVQVMVEGPGHVPLHQIE TNMQLAKTLCHNAPFYVLGPLVTDVAPGYDHITSAIGGAIAASSGADFLCYVTPAEHL GLPTEEDVKEGVIAARIAAHAADLVKGIKGAWEWDLEMAKARKALDWPKQIQLSIDPE KAGRMRKAKNEDSQERCTMCGKFCAYQLISDYMGTPFKGC" gene 2723726..2724529 /locus_tag="Dhaf_2519" /db_xref="GeneID:7259490" CDS 2723726..2724529 /locus_tag="Dhaf_2519" /EC_number="2.7.1.50" /inference="protein motif:PRIAM:2.7.1.50" /note="PFAM: hydroxyethylthiazole kinase; KEGG: cbl:CLK_3653 hydroxyethylthiazole kinase" /codon_start=1 /transl_table=11 /product="Hydroxyethylthiazole kinase" /protein_id="YP_002458983.1" /db_xref="GI:219668548" /db_xref="InterPro:IPR000417" /db_xref="GeneID:7259490" /translation="MKEKLTKALQALKHKTPLVHAITNVVTVNDCANSLLAVGASPAM CEAADEVFEFSQLAGSLYLNLGTLTKEQEMAAYLAIRGATLKGIPVILDPVACGAIPR KKATIERLGHFGRFTVIKGNLGEVKALAGLAARVRGVDSLDEGNDGLEACQSLARAYG CVVAATGKVDIVADGQRACLIENGTEMLTRITGAGCMAGALVAGFCGAYEDAFGATVA ALLTMSLAGELAQETSGGELPGTFRAHLIDQLSLVDEALIEKRGRVQWL" gene 2724520..2725143 /locus_tag="Dhaf_2520" /db_xref="GeneID:7259491" CDS 2724520..2725143 /locus_tag="Dhaf_2520" /EC_number="2.5.1.3" /inference="protein motif:TFAM:TIGR00693" /note="KEGG: swo:Swol_0641 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase" /codon_start=1 /transl_table=11 /product="thiamine-phosphate pyrophosphorylase" /protein_id="YP_002458984.1" /db_xref="GI:219668549" /db_xref="InterPro:IPR003733" /db_xref="GeneID:7259491" /translation="MAVDYSLYLVTDRILVGPKDFLLSIRKALEGGVTLLQLREKETN SREFYDIGVKVKELAAEFGVPLIINDRVDLALALDADGVHVGQQDLPLAKVRNIIGPD KILGYSVSSLEEALQGERMGADYLGAGPVFPTGSKKDAAEAIGLAKLKEIKAGVSLPV VGIGGIGAANLRVVKETGIDGVSVISAILSQEDPCAAAKGLVDLWRN" gene 2725131..2725796 /locus_tag="Dhaf_2521" /db_xref="GeneID:7259492" CDS 2725131..2725796 /locus_tag="Dhaf_2521" /inference="protein motif:TFAM:TIGR01489" /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: pth:PTH_0926 hypothetical protein" /codon_start=1 /transl_table=11 /product="2,3-diketo-5-methylthio-1-phosphopentane phosphatase" /protein_id="YP_002458985.1" /db_xref="GI:219668550" /db_xref="InterPro:IPR000150" /db_xref="InterPro:IPR006383" /db_xref="InterPro:IPR006384" /db_xref="GeneID:7259492" /translation="MEELNRIFFVDFDGTIVTQDMCAVLVETLAGEGWREINELWERK ELSTLECARRTFKLFKSNDPEVFRQLMDQAVFDPGFLDFAAFCEQRGFPLIILSDGYD FYIEYLLQREGLNLPYYANTLLFAPQLDVETPYSSGECDLCGVCKLQLMEKLLKPGCR SVYIGDGTSDFCPAERADKVFARSRLYQHCQEVGKEARLFQSFQDILQTVKHWGREEE EGT" gene 2725793..2726581 /locus_tag="Dhaf_2522" /db_xref="GeneID:7259493" CDS 2725793..2726581 /locus_tag="Dhaf_2522" /EC_number="2.7.4.7" /inference="protein motif:TFAM:TIGR00097" /note="KEGG: drm:Dred_0071 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1" /codon_start=1 /transl_table=11 /product="phosphomethylpyrimidine kinase" /protein_id="YP_002458986.1" /db_xref="GI:219668551" /db_xref="InterPro:IPR004399" /db_xref="InterPro:IPR013749" /db_xref="GeneID:7259493" /translation="MKNLLTIAGSDSSGGAGIQADLKTFSALGVYGMSVITAVTAQNT LGVDEVAEIGRDMVKAQIDAVFKDIPVHGVKIGMVSNPEIITQIAASLKEWKAPNIVV DPVMISKSGYALLKPEAVETLKRELLPLARVVTPNLPEACCLLGIEALDEEGMEFAAQ ELHRLGPESVLIKGGHLKDAANDLLFDGEDFSWFKAPHLNQKHTHGTGCTLSSAIAAH LALGYELQTTVQKAKEYLFGAIEQAFPLGHGVGPVHHFYRMTCR" gene 2726963..2727130 /locus_tag="Dhaf_2523" /pseudo /db_xref="GeneID:7259494" gene 2727362..2728258 /locus_tag="Dhaf_2524" /db_xref="GeneID:7259495" CDS 2727362..2728258 /locus_tag="Dhaf_2524" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: ckl:CKL_3865 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002458987.1" /db_xref="GI:219668552" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7259495" /translation="MQIKEVCEKCKLTKKAIEYYESKNLIHPQILENGYRDYSDADIA VLKEISVLRKCGVSIADIAEILTSSNKPAALAKCKYITELRMQRLNDIQKCMDSLIAN YDINREFDYLQTLDEYLYTIKEKLVFAFPGNYGLYVSMHFGRFLNGTIDTDEKKYAYD AIVQYLDRVDLYLPAELSEFLEALFNASEKIDAAKIEEETNGKMHEMLADTDGYLERN REEIEQYIEFKSSDEYQNSEAGKFQRYMLNFQKESGYQEVLIANMKILSPAYAEYLKK VKAANDIMLKKFPKAKDMYELN" gene 2728570..2729115 /locus_tag="Dhaf_2525" /db_xref="GeneID:7259496" CDS 2728570..2729115 /locus_tag="Dhaf_2525" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: fjo:Fjoh_3248 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458988.1" /db_xref="GI:219668553" /db_xref="InterPro:IPR000623" /db_xref="GeneID:7259496" /translation="MSRGIIVFGSNGSGKSTLGRELARILNFKYMDIEDYHFIKSEIP YTVERTREDRLNLMLADIEKSGSFVVSAVVGDFGEEISSRYNFAVFISAPLETRVERI KQRAYEQHGERICEGGDMYEQHLKFVDFVASRPLSRTEQWAKTLVCPVIHIDGTKSIS ENTELVVEEYLHNLSSKELRR" gene 2729551..2730786 /locus_tag="Dhaf_2526" /db_xref="GeneID:7259497" CDS 2729551..2730786 /locus_tag="Dhaf_2526" /inference="protein motif:TFAM:TIGR00900" /note="TIGRFAM: H+ Antiporter protein; PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_2619 predicted transporter, permease component" /codon_start=1 /transl_table=11 /product="H+ Antiporter protein" /protein_id="YP_002458989.1" /db_xref="GI:219668554" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR001991" /db_xref="InterPro:IPR004751" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259497" /translation="MLIKTEHWQRSFYTLWAGQAVSLITSAVLQMAIIWHLTEETGSA MVLSIATLVGFLPQAILGPFIGVLVDRYHRKYVMIGADLLIAAVGLMLALASLAMELP VWLIMVVLFLRSVGTAFHSPALNAVTPLLVPEDQLTKCAGYTQSIQSASYILGPALAA LLYAVWDLNSIILVDVAGAVLASILTAFVFIPRLEAGESAAQGNLMLEMKEGYSALRS NKGLFALLWVGALYMLFFMPINALFPLMSMKYFGGTTFHASLVEIVFAAGMLVGGLVL GVWGGFKNRVMSLAASILLMGVSLMVSGVLPVKGYAVFVLCSTLMGFSAPFYSGVQTA LFQEKISPEYLGRVFALLGSVVSVAMPLGLVLSALFADTLGVNRWFLISGILIMGIAV LPALMPGLRNLDRQEDKTA" gene 2730848..2731642 /locus_tag="Dhaf_2527" /db_xref="GeneID:7259498" CDS 2730848..2731642 /locus_tag="Dhaf_2527" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: hmo:HM1_0652 alpha/beta fold family hydrolase" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002458990.1" /db_xref="GI:219668555" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7259498" /translation="MPNATLADGKLHYLDRGAGKPLVFIHGLGADLSFHDPQIEFFSR THRVICPELRGNARSSKLTGPIHKILDIQCQDLAALMEQLGIEQTVLAGTSYGGVFCF NFVLRYPEKVSGLIIGDALGDTRISSFREALLMLVEYLGLWGVYLPKPVLIAMMRHQY KPWPYARDHVVNFVRGMRRTEFLLQLLAMNRIKFTPYLKQVSCPALGIVGEENKVGVG WMKSAMKEIPQSSLAIVPHALDPTNLCQPEEYNRLVKEFLERLNYI" gene 2731799..2733541 /locus_tag="Dhaf_2528" /db_xref="GeneID:7259499" CDS 2731799..2733541 /locus_tag="Dhaf_2528" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_1032 predicted transport protein, ATPase and permease component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002458991.1" /db_xref="GI:219668556" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259499" /translation="MNILKRFISYYKPYRLLFYTDMLCAIIVSAIDLSFPMILSYLIN RVFIQGREAILNTIMVVGIALLAMYIIKYFCQYFIVSYGHIMGAKMETDMRRDLFTHL QKLSFSYYDKRNTGELMSRLVADLFDISELAHHGPENLFISILKIVGSFVILMTLNVQ MTLALSIVTLVIIVFSLYKNKVMQPIFSDNRVKIAKVNSSVQDSLAGIRVVQSFANEG IEKKKFAHSNEAFLESKTGAYKVMGGFHAWNSFFEGLLYIVVVVTGGIHIANGTLRPS DLAVYILYINIFINPIDVLINFTEQFQKGYAGFKRFVEVLETHPDIKDEPGAKPLTQI KGDIEYQSVSFGYDEEESHVLDQVSLKIKAGETIALVGPSGGGKTTLCSLLPRFYEVT SGTITIDGQDIRKVTLASLRNAIGVVQQDVYLFDGSIKQNIAYGKAGATDEEIIEAAK KANIHEFISSLEEGYDTYVGERGVRLSGGQKQRLSIARVFLKNPPILILDEATSALDN ESERYIQKSLEELAQNRTTIVIAHRLSTIRNADEIIVITDEGIKERGNHQELLEIEGI YAHYYRMQFEGLEG" gene 2733574..2734695 /locus_tag="Dhaf_2529" /db_xref="GeneID:7259500" CDS 2733574..2734695 /locus_tag="Dhaf_2529" /EC_number="2.7.1.11" /inference="protein motif:PRIAM:2.7.1.11" /note="PFAM: phosphofructokinase; KEGG: hmo:HM1_0103 6-phosphofructokinase" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="YP_002458992.1" /db_xref="GI:219668557" /db_xref="InterPro:IPR000023" /db_xref="InterPro:IPR012829" /db_xref="InterPro:IPR015912" /db_xref="GeneID:7259500" /translation="MEPIKGEQRDGQSEIRKLAILTGGGDCPGLNAVIRAAVKTACHR GIAVVGIQDGFRGAVEGDFRPLELKDVSGILPRGGTILGTTNRDNPFAYPTQVGEERQ VQDRSAEVLDRFKAEGIDALIAIGGDGSLSIAWEFAKQGLKVVGVPKTIDNDLMCTDL TFGFQTAVATAQDALDRLHTTAESHHRIMILEVMGRYAGWIALYAGVAGGADVILIPE IPYQLESIAEAVQRRARLGKHFSIIVVAEGAKPLGGDMVVERTMSGRTDPIKLGGIGA KLAADLEKVTDMETRVTVLGHLQRGGSPIAVDRVLSTRYGVAAVEAALAGDFGMMVAL QGQDIVRVPMAEAVHKLKQVEPDDPVLNAARSMGIEFGD" gene 2734789..2735262 /locus_tag="Dhaf_2530" /db_xref="GeneID:7259501" CDS 2734789..2735262 /locus_tag="Dhaf_2530" /inference="protein motif:PFAM:PF04306" /note="PFAM: protein of unknown function DUF456; KEGG: drm:Dred_2010 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF456" /protein_id="YP_002458993.1" /db_xref="GI:219668558" /db_xref="InterPro:IPR007403" /db_xref="GeneID:7259501" /translation="MSTVALIIAVLLFIIGLLGTVLPILPGAVLIYGGMLIYGLMTEF ATLDFNFYLIQGLVFAFIFLVDYLATAAGTRHFGGSKQAGWGAAVGMIVGLFFGPLGI LVGPFLGAMGAELLRKTELSQAIRVGFGTLTGLLGGTIIKLGVEILMIVYFFIKI" gene 2735303..2736178 /locus_tag="Dhaf_2531" /db_xref="GeneID:7259502" CDS 2735303..2736178 /locus_tag="Dhaf_2531" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: nth:Nther_2394 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002458994.1" /db_xref="GI:219668559" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259502" /translation="MKIRKFEPKDRDSIVEIWYKASIIAHDFIPKEIWEAEKTTIRDQ YLPLAETWVAEEEGKVIGFISLLDQYIGGLFVEPSQQGKGAGTQLIQRAQEEKGHLTV GVYSKNSAARGFYRKHGFRKTNEELQTETGEIVINKAWKQAGDSVKSGESKPAAIRAL VIEDYDAVIELWQNTEGIGLSETDSRENIRRFLARNPYLSSVAEKDGEILGAVLCGHD SRRGYLHHLAVRSDRRLQGIGKRLVDISLENLKAEGIDKCHIFVFRENEKGVAFWAQN EWKARLDLTIMSKRT" gene 2736309..2737214 /locus_tag="Dhaf_2532" /db_xref="GeneID:7259503" CDS 2736309..2737214 /locus_tag="Dhaf_2532" /inference="protein motif:TFAM:TIGR00654" /note="TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cff:CFF8240_1498 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458995.1" /db_xref="GI:219668560" /db_xref="InterPro:IPR003719" /db_xref="GeneID:7259503" /translation="MKKYRIYQVDSFTRQRFHGNPAGVVPNADGLTEEQMQRIARELN NSETAFIFSSTSPDYDVEVRFFTPTTEVPLCGHATIAAHYVRAVEGDAVSGRVMQKTK AGILPVDIIQENSNYSIVMTQGTPEVGKPFRSEVVEWIADALGISVCDLHEHCPVAIA SAGHAKVMVGLKSNSQLHSLQPNLAKLSAISEEIGCNGYYVFTLNPQDEVLVHGRMFA PAIGVAEDPVTGNANGPLGIYLVHYGICRNLESSDAFEFTIMQGEAIQRDGTMRVHVK KENNKPVLVQITGEAVVAFSTEIEI" gene 2737471..2738394 /locus_tag="Dhaf_2533" /db_xref="GeneID:7259504" CDS 2737471..2738394 /locus_tag="Dhaf_2533" /inference="protein motif:PFAM:PF01556" /note="PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: fma:FMG_1513 heat shock protein" /codon_start=1 /transl_table=11 /product="chaperone DnaJ domain protein" /protein_id="YP_002458996.1" /db_xref="GI:219668561" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR002939" /db_xref="InterPro:IPR003095" /db_xref="GeneID:7259504" /translation="MQYKDYYQILGVDKKATLEEIKKAYRGLTKKYHPDINPGNKEAE EKYKEINEAYEVLGDPEKREKYDNFGNEFNYHNGYNFDPSQFGFGNGQFEFKTAGAGD YSDFFNLFFGEGGLDGFFGQKGPRTRGARSQFAYPGEDIESELHITLEEGFHGAEKQL SLRGRNGQKSLSVKIPKGINEGEKIRLKGQGEQGINGGENGDLYLTIRLHPHRNYIQE GINLTTTVDVLPWDAALGSEVTVKTLDSTIKVRIPPGIQTDSKIRIAGKGYIDRKGTR GDLYIKVRIINPTSISPEMKSLYEKLKDLSK" gene complement(2738399..2740123) /locus_tag="Dhaf_2534" /db_xref="GeneID:7259505" CDS complement(2738399..2740123) /locus_tag="Dhaf_2534" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: gtn:GTNG_3257 polymerase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458997.1" /db_xref="GI:219668562" /db_xref="GeneID:7259505" /translation="MLLVFLFAMLWIHRYIFLYADDLYYSRDAQYGLNYLPEALLDEL NSNGRVWIGGAMVLALKPQIEFFRILNPLILMLTVYILAKMAAFSYSSRQGKKGNPAL GLALLCASLFFLLLPLKIAHTTIYYAACAFNYLYPMALVLVYAYLLYTRISSGSRGEK VLLLILAFFVGSSTQQAGMIGIGFTIMISLYLSLIRRKLPFRTFLPLYGVMLLGYTLI IYGSLKRLLWEKTAGNEVVLMDVITELIKTNIFSLPAAPFVLLISLSCIFWLVLFSRP GSLADDCPAIAATLSSSEWSRAAAPEFEDGRPLGRKQRLFNRAFAVLLGVALIGYIYF LLYKNIPFELTHENLRSFSGLSVIAFVFLYLSALVYLSVVLLMKKNAPFLFFNTINAL GAQIMLIVVDARFAAAYKVMFPSLLLLSVFIFYSVLAFRQNILYLVLACFLVALSLQQ KALILVGVVCLGLSLIHCLYSIYHERESQRRLKLMQTSLGVFFCFISVLVFGATLQGY YQASIPQNYNLEAIKEYHEAEKKGGLLLKKVPPSYYGYGLGNWNDMPYFMKECYGIKE DTPIDYID" gene 2740294..2741241 /locus_tag="Dhaf_2535" /db_xref="GeneID:7259506" CDS 2740294..2741241 /locus_tag="Dhaf_2535" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: cth:Cthe_3097 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002458998.1" /db_xref="GI:219668563" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7259506" /translation="MISIILPVYNEEKQIYVNVQRIRSILLGAKIKHQLIIIDDGSTD GSWSELQRLAEDFNNVLLLKFSRNFGKEAALCAGLETATGDACVILDADLQHPPEYIP EMIRLWRDEGYEVVEGIKATRGRETMWGKIAALTYYRLFNKATGINLTNASDFKLLDQ KVVETWKTLKEKDTFFRGMSAWLGYKRIQIPFPVQERREGKSKWSLPSLFKLAIDSIT SFSAMPLQIITGLGIGLLLFDVVLVGQTLYMKFSGQAFTGFTTVIILILGIGSCVMIS LGIIGIYISKIYDEVKGRPRYIISEQKKSVLKTIRRKIQ" gene 2741322..2741636 /locus_tag="Dhaf_2536" /db_xref="GeneID:7259507" CDS 2741322..2741636 /locus_tag="Dhaf_2536" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_2152 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002458999.1" /db_xref="GI:219668564" /db_xref="GeneID:7259507" /translation="MELLLFLGLRRGVGFDLASANILAMGIATGVNFLMNRNWSFRSS TRVSRSFVLYISLILFNMVFTTWLIALLVSWGVSDFWAKFMMMAAATLWNFALYRKVI FT" gene complement(2741717..2742328) /locus_tag="Dhaf_2537" /db_xref="GeneID:7259508" CDS complement(2741717..2742328) /locus_tag="Dhaf_2537" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ctc:CTC01854 transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, TetR family" /protein_id="YP_002459000.1" /db_xref="GI:219668565" /db_xref="GeneID:7259508" /translation="MQEYHEVQWRIFHTLGCLLEKTNLDSISTKQLCEESHVSRQTFY RYFHDKYSVVNWHFDLLAEDTLLQIGRTLTWLQAHIKLFAELYKERSVYVYAAHSEDY NAIGKYAYRRSRDIYTGTLTNYIKLSPTKALLFQIDAAALLTSQCMFIWGEKGMREPP EELAALMDTVLPPELKGIFDHNLPSPGLSHNPLTKIEMCQRAH" gene 2742599..2744389 /locus_tag="Dhaf_2538" /db_xref="GeneID:7259509" CDS 2742599..2744389 /locus_tag="Dhaf_2538" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: gme:Gmet_1533 fumarate reductase/succinate dehydrogenase flavoprotein-like" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002459001.1" /db_xref="GI:219668566" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259509" /translation="MVEKKTATEEKSLSRRDFLRNTGILAGGAVLGTGLLAGCSDSAA KAEAPPPVEQTWDYEADVVIIGLGGAGASAAIEAHDAGAKVLVIEKQAEKTHYPNTRM SGGVWHNPDPMGDRGARVEYIKAMMSGENIPWKNEGEQEHVSAEMAEMFADGIMDVEN FLMTQAPDLDPAGMAPGGEASFPMFPKFKEAKYGKTINTRYKDFQNADDNVPAYEQPK EQKSAGEAFYWALVEEGIKGKRPEIQILFSTPAKRLIQGENGEIRGVIATQGDKEIKV KAKRAVVLSSGGYEYNLPMRRAFLEGPGVTGWGFYGSPDNTGDGIEMAILVGAGLVKV AKAASRIESAFPHGKNWDEKGLKMGSNTSVTSSKNSVIVDNFGKRYTDEHIITDSTRP YRYQFYKEAVHYDLLTMNYPRIPSWIIFDETRRTSSPVVGTSGSTVGYGFLPWSKDNL DAIQRGWILKADTLEELAAKIKADPENRELIDTQTLIDNVKKFNEYCAVGVDKDFGRT PATMGPVEKPPFYAMKLYPGGPNTKGGIDANAKREALDWNAKPIPRLYTAGEISSVFK FTYQAGGNLTECIVCGRVAGKNAAGQTPWS" gene 2744472..2745398 /locus_tag="Dhaf_2539" /db_xref="GeneID:7259510" CDS 2744472..2745398 /locus_tag="Dhaf_2539" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459002.1" /db_xref="GI:219668567" /db_xref="GeneID:7259510" /translation="MGDYTQAETKRQTRIEILNLRPEEVDAGKELWLQVRVISEAHDD LLGCRIQVMDLFNHSVAETELAVLDGISNDTHEFSLPAPQDPGEYTWTVLFSNQEKEG TSFAGSSGQLSFIVKPHRITLNVWGVPSPVPQGETFKVSIGAKCSAGCSLAGLPLVIE DDNHRVVYGHLGEAVLPQTNGVYWTEQELSSPEEETLHKWVIQCCTQELEIQHHAQPE TFLCRTTKPSEHQVMIEVLDKYEQTPIAKAYVMLGLYKATTDANGVAVLEVPEGRQEL YVTKDDFLSFQTSFVISKGIAIKAELEYCPIL" gene 2745459..2746043 /locus_tag="Dhaf_2540" /db_xref="GeneID:7259511" CDS 2745459..2746043 /locus_tag="Dhaf_2540" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: glo:Glov_0946 fumarate reductase flavoprotein subunit precursor" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459003.1" /db_xref="GI:219668568" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7259511" /translation="MMALIIMFLAIGVIAGCSNTADTPPQTTDTAQTPTPPTTGEPTA PATDTKDWWTPDMDCALCHASNVESMQNTKLTISAHAQEGQNCVDCHGLETLQEAHQG ATTVPGNITVRMPKEMCFQCHGSYEEIAALTADSTVLPKKDGGYANPHVRPNENHDAD VECYKCHKMHKEYDNRAECLSCHHTGELTCYTCH" sig_peptide 2745459..2745521 /locus_tag="Dhaf_2540" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.851 at residue 21" gene complement(2746160..2746534) /locus_tag="Dhaf_2541" /db_xref="GeneID:7259512" CDS complement(2746160..2746534) /locus_tag="Dhaf_2541" /inference="similar to AA sequence:KEGG:MA0724" /note="KEGG: mac:MA0724 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459004.1" /db_xref="GI:219668569" /db_xref="GeneID:7259512" /translation="MNCERCGDLIPDGESFDHRGKILCEDCYIGALQPPKSCDVAAVH SAKTHRQLSRESGADGLTELQSTMYNRIKESGKLTRPELMTLFNLKEWELDKQIAILR HCELIKARKIGEQIYIVPFELE" gene 2746738..2747724 /locus_tag="Dhaf_2542" /db_xref="GeneID:7259513" CDS 2746738..2747724 /locus_tag="Dhaf_2542" /inference="protein motif:PFAM:PF01928" /note="PFAM: adenylate cyclase; KEGG: mgm:Mmc1_0458 adenylate cyclase" /codon_start=1 /transl_table=11 /product="adenylate cyclase" /protein_id="YP_002459005.1" /db_xref="GI:219668570" /db_xref="InterPro:IPR008172" /db_xref="GeneID:7259513" /translation="MSLTIANQSDVFKFALVLYDYLMQKGQTKEAYDLSLLVDSCYSN DRYALKAHLQAFIQIQEKVQALPLPYQHALEEAITYIAQELKVGKAKEVPKGCGAVAD TGECRENTATAQEFQEFQEIELKLKVPNPQLGEMILQDPLIKELSRDFQLRVREYETT YYDTPSHLLINHQVCYRIRNFAGMYIAAIKGFGSSRKGLSIRSEWNRQLPENAPTLEP FLDLAIGRELESLIKDEELLPIFCTRFKRSTLDLIGQDGSRIELALDIGEIVAGSRRE SICELELELKSGQVEDVVRLGEALSEAYRLTPEERSKYQRGLMLAGLMSSEI" gene 2747803..2748981 /locus_tag="Dhaf_2543" /db_xref="GeneID:7259514" CDS 2747803..2748981 /locus_tag="Dhaf_2543" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459006.1" /db_xref="GI:219668571" /db_xref="GeneID:7259514" /translation="MNKLTKTAGIVALGLSLILTGCSAFPGQSKGDPQPVDQAGSKEP DSADLTDQQKSKAREKIESALNANQEIFQITWSPDQEQVLYIQPGGASKKGLDEAYLW QIGKEEARFVRDVQPTVRSLSWSPDSKHFIISEKLAEGAINSIVNAETLQESPFKPKS MDTPVWKPDSTAIAYGNEFHEYGETWGFLEIYTLGDQDSDYLWKAKDTYYRVESWDQE GNINYTEEDIPGQKTQKKSTQNIRPSISGVHLGDTREQVMAALGKNYQETAPSGETGH FPEPVYRWDYEGIKVFIGADSGKVLEINATSPQAVTDLGVKVGDKAEKVFAAYRSKYV EPESIHGGTLYGIFKVEGAAALAFNFDTDPAQYPRQIKPDHKVTGMVLTYPEIMDDSF" sig_peptide 2747803..2747898 /locus_tag="Dhaf_2543" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.605 at residue 32" gene 2749120..2749767 /locus_tag="Dhaf_2544" /db_xref="GeneID:7259515" CDS 2749120..2749767 /locus_tag="Dhaf_2544" /inference="protein motif:TFAM:TIGR00277" /note="TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cbb:CLD_3462 HD domain-containing protein" /codon_start=1 /transl_table=11 /product="metal dependent phophohydrolase" /protein_id="YP_002459007.1" /db_xref="GI:219668572" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7259515" /translation="MIRGEMTMPSLTFQEIDNHLMNDNKPSNFIIELNKAGIIETEYP FTLLGALKDTPQSPKHHPEGSVWNHTLMVLDNAAERKHLSQNPQVLMWAALLHDLGKA PTTRVRKGRITSYDHDAVGEKLAGQFLRELTRDERFIHQVAKMVRWHMQILFVVKGLP FANVKKMAAEVSIEEIALLGFCDRLGRGEMTPQKKQEEEQTIEKFLVRCMEILQG" gene 2749782..2750294 /locus_tag="Dhaf_2545" /db_xref="GeneID:7259516" CDS 2749782..2750294 /locus_tag="Dhaf_2545" /inference="similar to AA sequence:KEGG:Amet_1279" /note="KEGG: amt:Amet_1279 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459008.1" /db_xref="GI:219668573" /db_xref="GeneID:7259516" /translation="MREFKEITPEQFVHSPFQLLDKEWMLITAGIDEKVNTMTASWGG FGVLWNKNVAYIFIRPTRYTKEFVDGSTTLSLSFFPGSYKKQLGYLGRVSGRDVEKIK ESGLTVLKAGDGTPYFEEANMTLFGKKLYAQELKPECFSVEGLDEKNYPLKDYHTMYV VEIERILVQA" gene 2750391..2751593 /locus_tag="Dhaf_2546" /db_xref="GeneID:7259517" CDS 2750391..2751593 /locus_tag="Dhaf_2546" /inference="protein motif:PFAM:PF01139" /note="PFAM: protein of unknown function UPF0027; KEGG: cth:Cthe_0250 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0027" /protein_id="YP_002459009.1" /db_xref="GI:219668574" /db_xref="InterPro:IPR001233" /db_xref="GeneID:7259517" /translation="MIKITGQYNHALVFTETMEAGASQQIETLCDQEFVKDSKIRIMP DVHSGVGCTIGTTMTIKDKVVPNLVGVDIGCGMEVTQLEGSHLELQKLDKLIYEKIPS GFNIRNKEHRFHESIDLDDLKCKREVNLTRARRSIGTLGGGNHFIEINQDSRGIYYLV IHSGSRHLGNEVAKLYQEEAYRALNKSTKADIEGLIAELKAAGRDKEIPKEVRRKKAE VLTDVPKALAYASGALFQDYIHDMKIVQHFAALNRKAMADEILKGMKLKAVDQFTTIH NYIDTEHMILRKGAVSAQKDERLLIPINMRDGSLICIGKGNPDWNYSAPHGAGRLMSR SQARSSLTLTQYKEMMQGVFSTSVNKETLDECPLAYKPMEDIIKNIHDTVEIVAQIKP VYNFKAAD" gene 2751807..2752178 /locus_tag="Dhaf_2547" /db_xref="GeneID:7259518" CDS 2751807..2752178 /locus_tag="Dhaf_2547" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_0791 regulatory protein GntR, HTH" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002459010.1" /db_xref="GI:219668575" /db_xref="InterPro:IPR000524" /db_xref="GeneID:7259518" /translation="MSWDLKTDRPIYTQLIEQIQLKIFSGAYPLGSKLPSVRDMAQEA AVNPNTMQRALAKMEEDGLIITHRTSGRSVTEDAHMVEMAKTQVAKEQIAEFLEKMKM MGFEQKEILTIINTMAEEMKK" gene 2752175..2752873 /locus_tag="Dhaf_2548" /db_xref="GeneID:7259519" CDS 2752175..2752873 /locus_tag="Dhaf_2548" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbt:CLH_0643 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459011.1" /db_xref="GI:219668576" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259519" /translation="MNPILECKGLTKKYGTKVALNTINLTLERGQIVGLLGPNGSGKS TLIKLANELLTPSGGEILIDGQKPGIGTKKIISYLPEKTYLNDWMKVHEIIEFFQDFY EDFKPEKAFEMLKNLNINPHDRLKTMSKGTKEKVQLILVMSREADLYLLDEPIGGVDP AARDYILKTILSNYNEKGTVLISTHLISEIENILDYVVFINQGQVVLTSTVDEIRSEK GKSVDALFREVFKC" gene 2752867..2753664 /locus_tag="Dhaf_2549" /db_xref="GeneID:7259520" CDS 2752867..2753664 /locus_tag="Dhaf_2549" /inference="similar to AA sequence:KEGG:CLH_0642" /note="KEGG: cbt:CLH_0642 ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter permease protein" /protein_id="YP_002459012.1" /db_xref="GI:219668577" /db_xref="GeneID:7259520" /translation="MLSKLMKYELKATGRVFLPLYLALLVFALINRFMLGVSSSHHWQ APAVISMAVYIFIMAGIFVMTLIMTIQRFYKNLLSEEGYLMFTLPVKPWQHIVCKMLI SMFWLVISFFVAMLSIILIALKAGDWEHIMRELTQFSGTLWGYLGTSIYLYSLEAVIG IFLILASAILILYASIAVGHLFNQHRILASFAAFIGLNTLTQMISMGIGFIIGHGNAW NITPGNFLTMHTEIHLFIAFILIESALITAAYFAITNTILKKRLNLE" misc_binding 2753715..2753898 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 132.39" /bound_moiety="adenosylcobalamin" misc_binding 2753982..2754163 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 116.71" /bound_moiety="adenosylcobalamin" gene 2754341..2755912 /locus_tag="Dhaf_2550" /db_xref="GeneID:7259521" CDS 2754341..2755912 /locus_tag="Dhaf_2550" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: amt:Amet_2035 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002459013.1" /db_xref="GI:219668578" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7259521" /translation="MRKIVLLLLLAGLMLMVGCSASNGGKNITENVAKDEITISAGVN LVAGGFDPTTGYGVWAPDIFHSHLLQVKENNQLVNDLATSYDISADGLTYTFKIRNDA KFADGHSLTSEDVAFTFETTKSKASAADLTMLDSVEALDESTVVFRLKAPWSTFVFNL SEVGIVPKHLYNENYGDHPMGSGAWKVAEFAVDQKLILVPNEHYYGPIPKFKKVTILK LDEDAALAAAKSGQLDLVLVESEFASTPVDGMKLYRMSAMDAFTINLPTIPETTDPSG QKVGNNVTSDPAIRKALNIGINRQLITQNALNGFGQVTYGAAKELPWSNGDMFKDNQV EEAKKILEDAGWKDTDGDGIREKNNIKAEIVITGRSNDLARYNTVVALAEDVKKLGIQ IIPKSAPWSECREARNLPTCWVFGQPNPIEFYRYYDSSQIGVAVIGNPASYTNPEVDA VIQKALAATNSDEANKYWQEGQALAQKDIPYLWIVRPEVTYLVKEGLKIPSLQKLPTR GQGISIVENMNEWSW" sig_peptide 2754341..2754406 /locus_tag="Dhaf_2550" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.504 at residue 22" gene 2755914..2756909 /locus_tag="Dhaf_2551" /db_xref="GeneID:7259522" CDS 2755914..2756909 /locus_tag="Dhaf_2551" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_2036 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459014.1" /db_xref="GI:219668579" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259522" /translation="MSTTVYKGLGRYFSSTLVRMLTLLGAVSLISFMLIALSPIDPID AYLGDAHVSEEQRANIAEHWGLNKSPVERYGIWITHVLQGDMGESITYRQPVAKVIGE RFRASLALMGVAWVLSGVLGFTLGIIAAVNKGKWIDRFIKTFCLILASTPLFWLGLLF LMVFAVYLQWFPLGLAAPINKLAHEVTLGDKIYHLILPALTLSITGVAGIALHTRQKF IDVLKSEYVLFAKARGEKPREIIRRHGLRNIALPGITLQFASVSELFGGSVLAEKVFS YPGLGNAATHAGLKGDAPLLLGIALFSVLFVFTGNFLANVIYGIVDPQIREGGSS" sig_peptide 2755914..2756024 /locus_tag="Dhaf_2551" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.869) with cleavage site probability 0.866 at residue 37" gene 2756906..2757721 /locus_tag="Dhaf_2552" /db_xref="GeneID:7259523" CDS 2756906..2757721 /locus_tag="Dhaf_2552" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_2037 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459015.1" /db_xref="GI:219668580" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259523" /translation="MNRRRKIMLIMGSGLLVLAAITIGGILMDSALYAPNYDFRSQAP SWKHPFGTDYLGRDMFFRTMAGLSLSIRVGLLAATVSSVIALVLGSLSAVFGGKIDTA VNWLVDLCMGIPHMILLILISIALGGGAVGVITGVAVTHWPSLTRVIRAEVMQVRSAH YVQLARALGKSPWYVAASHIIPHVLPQYLVGLILLFPHAILHEAGITFLGYGLPLEVP AVGVVLSESMKHLATGMWWLAFFPGLALLLVVMLFDLIGDYLKILIDPYAAHE" sig_peptide 2756906..2756965 /locus_tag="Dhaf_2552" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.788 at residue 20" gene 2757734..2758609 /locus_tag="Dhaf_2553" /db_xref="GeneID:7259524" CDS 2757734..2758609 /locus_tag="Dhaf_2553" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_2038 oligopeptide/dipeptide ABC transporter, ATPase subunit" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459016.1" /db_xref="GI:219668581" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259524" /translation="MAEAKQTVILDVQGLSVTFDGYDASLEKITSLAIADLSVQIHTG EILAIVGSSGSGKSLLAHAIMGILPYNAQVGGKMAYKGQELTPEYREKLQGKEIAFIP QSVAYLDPLMRVGEQVRGTGGEKLREAQRKAFAKYRLDGKAEKLYPFQLSGGMARRIL ISTAVVANAELIIADEPTPGLDLNLAIQALKDFREFADQGKGVLLITHDIDLALNVAD RISIFHSGTVVETARREDFSGDGEGLKHPYSRALFRALPQNGFQIAHCPQCGLSCAVW EIDGNELRCACGYHA" gene 2758593..2759231 /locus_tag="Dhaf_2554" /db_xref="GeneID:7259525" CDS 2758593..2759231 /locus_tag="Dhaf_2554" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_2039 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459017.1" /db_xref="GI:219668582" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259525" /translation="MATMLEVKDVSFRYANGPWVLHNVNLKIEDGERVALVGPSGYGK STLAKIMAGFLRPEKGTVLLDGKPLPKGEYCPVQLVYQHPEKALNPRWKMKYSLKEAG VLDPEIMNEMGIREMWLERWPNELSGGELQRFCVVRALGEQTRFLIADEMTTMLDAVN QAHIWKFLLRHADKKKLGIILITHNMYLAEQVASRIIDVPSINKISVRTEDL" gene 2759256..2759420 /locus_tag="Dhaf_2555" /db_xref="GeneID:7259526" CDS 2759256..2759420 /locus_tag="Dhaf_2555" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459018.1" /db_xref="GI:219668583" /db_xref="GeneID:7259526" /translation="MYIVSWFFYFIAPLRRAGPLKLLFLQIYEACLVIFKIAGFLNRR GRDTLFPKVE" gene complement(2759376..2759966) /locus_tag="Dhaf_2556" /db_xref="GeneID:7259527" CDS complement(2759376..2759966) /locus_tag="Dhaf_2556" /inference="similar to AA sequence:KEGG:Mbur_0692" /note="KEGG: mbu:Mbur_0692 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459019.1" /db_xref="GI:219668584" /db_xref="GeneID:7259527" /translation="MKRTRPLVFWLYILLCLTIVPMTFVHLARLNWLSTGMCLLTLLF MSIPFLLETKYKLTIPREFLTALILFLYASMFLGTANRMYDVFWWWDKMLHGASGFIF AQMGFLLLMFLDARQKQDSGRSRLLAALFAFSFSLAAGGVWEIYEYTMDCTFGTLYQG VGIHDTMTDIILDALGSLVFALLLYFRKKRVPSSSV" sig_peptide complement(2759376..2759459) /locus_tag="Dhaf_2556" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.866) with cleavage site probability 0.643 at residue 28" gene 2760196..2760975 /locus_tag="Dhaf_2557" /db_xref="GeneID:7259528" CDS 2760196..2760975 /locus_tag="Dhaf_2557" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpo:COPRO5265_0009 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459020.1" /db_xref="GI:219668585" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259528" /translation="MNQVLIKTHQLTKRYGDVPVVNQLNLEVRAGEIFGFLGPNGAGK TTTIKILTGLMEPSEGEALICGYDIRKQPTQAKALMAYVPDQPKLYGKLSAWEFLKLI GDLYQIPKDVSRKRAEMLMEMFGLLDRADELLEGYSHGMRQKVVLASALIHQPKVILL DEPTVGLDPASARLLKDVLQELAHQGAAVFVSTHILEIAERMCHRVGILEKGKLIAQG SPEELRQNVGHGGESLEDIFLELTGGHENEELIKSLEEGRA" gene 2760972..2762894 /locus_tag="Dhaf_2558" /db_xref="GeneID:7259529" CDS 2760972..2762894 /locus_tag="Dhaf_2558" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_2453 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459021.1" /db_xref="GI:219668586" /db_xref="GeneID:7259529" /translation="MRILLPPPIETPPPPQSFFQDFILLFKNQFRVSWNKFRHRPKSA MLLYALLIFFIVAFISSMGYLAYGALGSISYEVVEGFLSLLFLGGLVGQIFFGITAAF AALYMSEDLELLFIAPVSLKAVFAVKSLSVIASNFLTALLFVFLPGLFYGLFFQAGPA FYILVLLVGLGLMIIGTAIAELLNLVVMRIVPPHRSKEAVGFIGALAGIMIALFFQIP NLILGREEQFDMTSWLTGNEQVLNLMHLFPWGWGSQALVAGMSGDFLVGLGWSLLLLA VGVGLFLLAFNLLEQGFRRGFISLSQGEGGRRRTKSRKRALPDQVTPGQTSARTSRTT LQGRADTTLQGIFSLLHEEPVGQTSPLAGMWAVAKKDLLYLKRDTREWFGYLTPLIIM AFFIAQYLFVRTPGSESSLVTVFIMYTIMFSGNMALLSFGREGESDWLLNSVPLGGWP VVLGKLLAAVLPTLVLMEALLVGTALAIGLSTTMILALAFGAIFLSLGSSAIGLFYSI NYSRFNPENPQQRISPGASMFMYLVNMIFVLLLALGILYVFRPVELVAVLQALPPVTY EGGFWSGVLYVLYLLSRPILWPTWARLIIGIPVTAAIWAVMFFGFMAATVRQSRKGFR VEIVTTKKKQKTRKKK" gene 2762919..2763287 /locus_tag="Dhaf_2559" /db_xref="GeneID:7259530" CDS 2762919..2763287 /locus_tag="Dhaf_2559" /inference="similar to AA sequence:KEGG:RBAM_002900" /note="KEGG: bay:RBAM_002900 YdfQ" /codon_start=1 /transl_table=11 /product="YdfQ" /protein_id="YP_002459022.1" /db_xref="GI:219668587" /db_xref="GeneID:7259530" /translation="MSIEPLLTIQNNEQLSQLLQEQKTSILYFSSPDCNVCHALLPKV LKVAQVYKIPVGQINTQEFKEGAGQLLVFTVPTLLVMCEGREILRESRFIDLQNTARI LESVTEEMQVPSSIISLSNI" gene 2763395..2763601 /locus_tag="Dhaf_2560" /db_xref="GeneID:7259531" CDS 2763395..2763601 /locus_tag="Dhaf_2560" /inference="protein motif:TFAM:TIGR01411" /note="TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mta:Moth_1278 sec-independent protein translocase TatA" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, TatA/E family subunit" /protein_id="YP_002459023.1" /db_xref="GI:219668588" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR006312" /db_xref="GeneID:7259531" /translation="MITFGMITPTVAIIVLVIALLIFGPGKLPEVGKAMNKGLKNFKR EMNTVDAEIVSEEKNTDPKEKTEE" gene 2763805..2764632 /locus_tag="Dhaf_2561" /db_xref="GeneID:7259532" CDS 2763805..2764632 /locus_tag="Dhaf_2561" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: cac:CAC2804 metallo-beta-lactamase superfamily Zn-dependent hydrolase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002459024.1" /db_xref="GI:219668589" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7259532" /translation="MGNKLVELVSALTTSSEEVLPDILILEFRIVTACLVGIPEEEGS QWVLVDTGLENSSQFILESVHSRFGKNSRPQAIILTHGHFDHVGSVKELAEYWDVPVY AHTLELPYLTGKKDYPLADPGVGGGLVSGISTTFPHTRIDLGYRIFPLPDHGEVPGMP GWQWVHTPGHTDGHISLFREKDRVLLAADAFTTTKQESLWSVMTQEEQMGGPPKYFTT DWVEAEKSVKRLEELKPSLVIPSHGKPMAGDELSHHLVYLAQHFQEIAVPEQGRFVE" gene 2764739..2765344 /locus_tag="Dhaf_2562" /db_xref="GeneID:7259533" CDS 2764739..2765344 /locus_tag="Dhaf_2562" /inference="similar to AA sequence:KEGG:CHY_1407" /note="KEGG: chy:CHY_1407 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459025.1" /db_xref="GI:219668590" /db_xref="GeneID:7259533" /translation="MKESQKKYRDALEHAKQEFAKRSFAKILELSGAAPYDESSLVLF YGGEHYRVWYPEGEISPCEDITDQILILQYLTEVCGVQPTGRWISFRELPGGNNHYGA FKLEAMDPIAEHFGNSPEKFESICQMLKGKKLAMGDIAYAIEVLPKLELALILWLADD EWPAKANLLYDATASMHLNTEGLEVMAINLVEKMIAKAASL" gene 2765702..2768086 /locus_tag="Dhaf_2563" /db_xref="GeneID:7259534" CDS 2765702..2768086 /locus_tag="Dhaf_2563" /inference="protein motif:TFAM:TIGR02166" /note="TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; anaerobic dimethyl sulfoxide reductase A subunit DmsA/YnfE; KEGG: mta:Moth_1386 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family" /protein_id="YP_002459026.1" /db_xref="GI:219668591" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR011888" /db_xref="GeneID:7259534" /translation="MVNKDFKVSRRSFLKWSAAVAGSSTLVGCMPLTSGAGAEPAVAQ AGNRHLDAEIKPSICWHNCGGRCQIKAQVKDGVVLSFVTDNEGPDTPDNLQARACLKG RSQRQRLYHPDRLKYPMKRVGERGAGQWEKISWEEALDTTASELKRIINQYGNESVYF IYASGVGGAFNQSYVGGASARLLNALGGYLSFYGNYSQANYMYAIPYMFGAGYGGSSP TSFSDAQLIVMFGDNPASTRVGGLNSTYYLKLAKENGTKVIVIDPRHSDTVGTFADQW IPIRPTTDAALVAGLAYVILTEELHDQAFLDKYCIGFDEEHMPEGVPAGNSYKSYLLG VSDGQPKTPQWASEITGVPVETIIQLAREIAGAKPCFILQGRGMQRHANGEFQALSVP LLALMTGNMGKLGANPGMYEGFTSVKMGAYPAGTNPIQTKVSFFMFTDAIEKGGNHTK ENGGLQGADRLQHGIKFIWNYGGNALINQHSDTGRTTELLKDTSKCEFILGIENFMTP SMEYADIILPDITQFEQEDIVTRALGQGLALYGQKLVDPLYECKGVYEICTELAKRLG VLDKFDEGKSQEQYLRECVAVAQAAHPDFPSFEAFREKGIYKTKPKKVIAYQAFVEDP EKNPLQTPSGKVEIFSKTLYDMNNPERIPAVPKYVAVAEGPKGALKEKYPLQCIGHHS KRRVHSTFDNLPWMEEAEPQKLWLNPQDAAARGIEDDDTVKIFNDRGTVKVKVKVTPR LIPGVCSLPQGAWYTPDAQGVDTRGCINTLTTWEPTALAWGNPQHTNLVQVEKA" sig_peptide 2765702..2765812 /locus_tag="Dhaf_2563" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.379 at residue 37" gene 2768099..2768671 /locus_tag="Dhaf_2564" /db_xref="GeneID:7259535" CDS 2768099..2768671 /locus_tag="Dhaf_2564" /inference="protein motif:TFAM:TIGR02951" /note="TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1385 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="YP_002459027.1" /db_xref="GI:219668592" /db_xref="InterPro:IPR000813" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014297" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259535" /translation="MANQYGFYVDQHNCIGCFTCQIACKDKNDLADGLRWRKVHEFTG GSCIEENGVFKSNVFAYWLSLGCNHCEHPKCAENCPTGAMYKREEDGIVLVDQDKCIG CGYCTWSCPYEVPQVAGKTASKCNFCIDLQKEGKNPACVDACIMRVLKFGPLDELRAE YGEIAQVKGLPSADITKPSLVITPHKAAIK" gene 2768688..2769515 /locus_tag="Dhaf_2565" /db_xref="GeneID:7259536" CDS 2768688..2769515 /locus_tag="Dhaf_2565" /inference="similar to AA sequence:KEGG:STH711" /note="KEGG: sth:STH711 anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002459028.1" /db_xref="GI:219668593" /db_xref="GeneID:7259536" /translation="MKEMPLIIFTLSMQAAVGAVLWAIFLRLRDKEASAYQTNTLCAL ILSAVGIIASLLHLGKPFLALTSMSNFMGSWLSREIFFSGGFFVLLAVFWWLERSHKA HSLKETAGYLACLSGLAAVFAMAKLYMETIIPAWQSANTLVDFYATTLVLGAIVFYVS SGQKGREKLPRLELFVLGIVLVQIAFLPNYVAGLGAMAGAGQESAALLAGGYSAAVFL RWLLMLGGVFLFLISRTGKFINQKGFLYTAVGILIVGEIMGRYLFYTSGIPIGLGIL" sig_peptide 2768688..2768744 /locus_tag="Dhaf_2565" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.835) with cleavage site probability 0.780 at residue 19" gene complement(2769596..2769781) /locus_tag="Dhaf_2566" /db_xref="GeneID:7259537" CDS complement(2769596..2769781) /locus_tag="Dhaf_2566" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbk:CLL_A0122 hypothetical protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459029.1" /db_xref="GI:219668594" /db_xref="InterPro:IPR001080" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259537" /translation="MYATVESDCIGCGSCEAVCPEIFRMNDDGLAEAYVNPVPAELEE SAKEAADMCPVNVIILE" gene 2769974..2770594 /locus_tag="Dhaf_2567" /db_xref="GeneID:7259538" CDS 2769974..2770594 /locus_tag="Dhaf_2567" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_1316 5-methyltetrahydrofolate--homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002459030.1" /db_xref="GI:219668595" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7259538" /translation="MSGELAKKLGALDEDAVLAGVQALKEQGVPGLDIIQELQEGMQA VGQKYEAKEYFLSELIMSAEIFNEAISALGDLSGTEQSHLGNFVLGTIYGDIHDIGKN IVSTVLKCNGFNVIDLGVDVPTEKFIEGIKEYKPKVIGFSCLLTTAFDNIKAAIEEIE KAGLRNELRILIGGGPVDQSVCDYVKADAVCRSAQEAVEVAQKFSA" gene 2770653..2771456 /locus_tag="Dhaf_2568" /db_xref="GeneID:7259539" CDS 2770653..2771456 /locus_tag="Dhaf_2568" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002459031.1" /db_xref="GI:219668596" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7259539" /translation="MLIVGELINTSRTEIKTAVLNRDAETIQQVAKAQEAAGATYLDV NCGNLVEQEIAAMGWLVDTIQEVSALPLSIDSPNPAALSEGLQRARHGQPMINSISNE TARWQAVLPLVLEYRTKIIALCIEDSGMPKGLEDRLRIADSVINRLVQAGVPLEAIYI DPLVTPISTDQKTGKILLKVIRTIMEGYPGVHTICGLSNISYGLPARKVLNRLFMVQT MSAGMDSYILNPTDKGMLGSLKGSMALLGLDRHCRAYNNAYREGLYDHA" gene 2771495..2772610 /locus_tag="Dhaf_2569" /db_xref="GeneID:7259540" CDS 2771495..2772610 /locus_tag="Dhaf_2569" /inference="protein motif:PFAM:PF01208" /note="PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dol:Dole_2963 hypothetical protein" /codon_start=1 /transl_table=11 /product="Uroporphyrinogen decarboxylase (URO-D)" /protein_id="YP_002459032.1" /db_xref="GI:219668597" /db_xref="InterPro:IPR000257" /db_xref="InterPro:IPR001412" /db_xref="GeneID:7259540" /translation="MSNSQLYKERKERIAKAVALGKTDRTPVVLEFAAFAARAQTMSV AEFISSSLVSAEAMIKTVEKVGGADGVDYGSYFKYGLEMAWLSKIKRPGEELPENELW QVVEAELMKQSDYDRIVEEGWPNWLMSYVTEHFGPELLPQIMADGQNASKVAEMWKEA GIPTLTGGGGVTTIPYEMFCGGRSFSKFVRDMFKIPDKVQAAMDAALPFMAPQSIAGS KQLGSEYLWLGGWRAASEMLSQAQWDRFVFPYYEKLIYEILDAGITPILHFDSDWTRD LARFKDFPKGKIILELDGMTDIYKAKEILGDTMCIMGDVPAALLTLGTPDAVHNYCRK LIEEIGPTGFILHPGCDIPIDAKIENVQAMVASVTSK" gene 2772679..2773404 /locus_tag="Dhaf_2570" /db_xref="GeneID:7259541" CDS 2772679..2773404 /locus_tag="Dhaf_2570" /inference="protein motif:PFAM:PF07702" /note="PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mta:Moth_1312 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002459033.1" /db_xref="GI:219668598" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:7259541" /translation="MKTRESFVPVYFQLAEDLKEKILAGELKPGDALPSETQLGEQYG ISKMTVRNGLRLLAQEGLIESFRGKGSFVAHPNLSELILNLAEHGSENPQDYDSRLLA INVIAAEDGVALRLQIKPGTKLIQFRRLLLIEGEPVAVENRYLTYQRGQPLVEQEIKY ADFPEAVARHTGIITEGNQVTISAVSLHQAEAELLEASSGIPALKVEQLVYGRQNTPL GLSIMICHGEKYHLIASTRSFFG" gene 2773432..2774088 /locus_tag="Dhaf_2571" /db_xref="GeneID:7259542" CDS 2773432..2774088 /locus_tag="Dhaf_2571" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_1311 cobalamin B12-binding" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002459034.1" /db_xref="GI:219668599" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7259542" /translation="MRMVESMLVAAVTRLDVDKVLALAVSEIQSGKDSIEIIEETRQG MTQVGHLYDQGKYFLADLMMSAEIFKDVISLVSDQTNAIAVIEPSATILFGTVKKDIH DIGKNLMISLLRFNGHKVIDLGVDVAPERFAEGCIEHRASIVCLSGLITQSYDSMRLT VQALEKMGLRPGVKVVIGGLVNEQVRQYTKADYWVKDCSEGVKLCSSLFNLKTHQEIS" gene 2774100..2774798 /locus_tag="Dhaf_2572" /db_xref="GeneID:7259543" CDS 2774100..2774798 /locus_tag="Dhaf_2572" /inference="protein motif:PFAM:PF07796" /note="PFAM: Protein of unknown function DUF1638; KEGG: amt:Amet_2101 hypothetical protein" /codon_start=1 /transl_table=11 /product="Protein of unknown function DUF1638" /protein_id="YP_002459035.1" /db_xref="GI:219668600" /db_xref="InterPro:IPR012437" /db_xref="GeneID:7259543" /translation="MKTVIIACHTLKDELNSAIQEADCPFPVLWIESGLHLYTDTLNK RLQQELARITNVDRILLAFGYCGNSLLGLTSPHAQLVFPCVDDCISLLLGSQHARKKI SEEMGTYYLTKGWLEFESNIWQEYQYAVKRYGKEKAERLFRQILNHYHRLAVIDTGAY EIADFLELTEKIAATLKLSHQIIPGSTSYLKKLLTGPWDDEFVIVPPGEIVTLTHLCH DTNEPLWQIIGMSQ" gene 2774835..2776682 /locus_tag="Dhaf_2573" /db_xref="GeneID:7259544" CDS 2774835..2776682 /locus_tag="Dhaf_2573" /inference="protein motif:PFAM:PF00111" /note="PFAM: ferredoxin; KEGG: swo:Swol_0420 hypothetical protein" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_002459036.1" /db_xref="GI:219668601" /db_xref="InterPro:IPR001041" /db_xref="GeneID:7259544" /translation="MGKEITSRIIIGGQNPIAVKNRAWTLMDILTDAGVFLESVCGGQ GTCGKCKVRVLSGQVTDGQGNPAEPENDGSYLACRVYPLGQVVLADITQRGVTAKGEI GRIHISLEDRAPVLSKSVVRPTYPTLAQNYSLQEMISNVNELQSQEKQDLHITALRDM ALLAQTKTESYTLIHLGDHVTAVEGGDTSSVLYGVAFDIGSTTVAGMLMDMNRGEAVA AAAETNPQSAYGADVISRIKAAEKPEGLKQLSDLIRHCLSTLIRRLCSISGIRVQDIY LVTVVGNSTMEHLLMGISPTSLTIPPYVQAFKSLSPFPPQELSLDIHPGGRVILIPNI ASFVGADTTAAILAMDQDLTPKLTLLIDLGTNGEIVLGNRERMIVTSTAAGPAFEGAQ LSCGMRATDGAIDDISIQEDVLIRTINAQKPAGICGSGIIKALAEMVRRGIITSSGRF AENSQMAQLSPELRSRIREKEGQREFVLAFAEESANGSDIVITQGDVRELQLVKSSIC TGSQILMQTLGVNPEDIEQVFIAGAFGSFVDLDSALAIGLIPIQERNRIRSVGNAAGE GAAKALLSHKHIQRCQAIAEKAEFVELANHPQFQKSFINNLAFPKGGIT" gene 2776679..2777305 /locus_tag="Dhaf_2574" /db_xref="GeneID:7259545" CDS 2776679..2777305 /locus_tag="Dhaf_2574" /inference="protein motif:PFAM:PF02492" /note="PFAM: cobalamin synthesis protein P47K; KEGG: mba:Mbar_A0757 divalent cation transport protein" /codon_start=1 /transl_table=11 /product="cobalamin synthesis protein P47K" /protein_id="YP_002459037.1" /db_xref="GI:219668602" /db_xref="InterPro:IPR003495" /db_xref="GeneID:7259545" /translation="MNVLLFGGFLGAGKTSLILSAAKFLVENNLTAQATNPAKPSLII IENEVGETGIDDKILKANGLMVRELFSGCICCTLTSELTVTLNELYETYDPQWVIVEA TGMTYPHRIAETIHTYGKGVENLKIMIVADAERWEELMEIVPGLVEGQIAKADLIFLN KIDCMHHEALAEIEKSLHHLNPAAQIHCVSAFRGINPEIWREAVWRNE" gene 2777298..2777786 /locus_tag="Dhaf_2575" /db_xref="GeneID:7259546" CDS 2777298..2777786 /locus_tag="Dhaf_2575" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459038.1" /db_xref="GI:219668603" /db_xref="GeneID:7259546" /translation="MSEHKHEQHRHGHACECESCHGSEHRHENTLPKVHAALNEEPEI FSESYELTFKQESSTLPVQEALLHWGGEILRWVKNKHGFVGHIKGFSEGTEHFWFSST GKAINIKSSSGWSEGMDKKFTINATAIIFGTPKKELAEYARQCLELSIATKCPDSTLV RK" gene 2777910..2778779 /locus_tag="Dhaf_2576" /db_xref="GeneID:7259547" CDS 2777910..2778779 /locus_tag="Dhaf_2576" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gtn:GTNG_0620 oxidoreductase (short-chain hydrogenase:reductase family)" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_002459039.1" /db_xref="GI:219668604" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7259547" /translation="MSETKIPQPTFPAQHQDKQPGLETLMNPSPIFEDLNYRPSGKLQ GKVALISGGDSGIGKAVAILYAKEGADIAIVYLDEQVDAQATKERIEQLGRRCLLIPG DIGEENFSNQAVQKTLDTLGGLDILVNNAAEQHPQNSLLDITAQQIEQTFRTNIFGML YLTKAALPHLRYGSVIINTASITAYKGDAKLIDYSASKGAVVAFTRSLSESLIKQGIR VNGVAPGPIWTPLIPASFDANEVSTFGSTTPMQRAGQPVELAPAYLFLACEGSAYMSG QMLHVNGGTIVNG" gene complement(2778905..2779576) /locus_tag="Dhaf_2577" /db_xref="GeneID:7259548" CDS complement(2778905..2779576) /locus_tag="Dhaf_2577" /inference="protein motif:PFAM:PF02698" /note="PFAM: protein of unknown function DUF218; KEGG: cbh:CLC_0704 putative SanA protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF218" /protein_id="YP_002459040.1" /db_xref="GI:219668605" /db_xref="InterPro:IPR003848" /db_xref="GeneID:7259548" /translation="MKTKVIRLLQLLVIVFLVGGLSVLSINFYVHSFSAKYIVTMDKP LPQTDAILVLGAYFNPNTGKPSDMLGDRLETAYEVYTKNPDTKIIVSGDHGRKEYDEV NGMKDYLMAKGVPDEHIFMDHAGFSTYESMYRAKEIFQVQSLIVVTQDYHLYRAIFDS RKMGIESYGVIADKRYYLGINYYKLREVAARNKDFLYALVKPEPTFLGEPIPVWSNGQ LTNDR" sig_peptide complement(2778905..2779003) /locus_tag="Dhaf_2577" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.675 at residue 33" gene 2779899..2780273 /locus_tag="Dhaf_2578" /db_xref="GeneID:7259549" CDS 2779899..2780273 /locus_tag="Dhaf_2578" /inference="protein motif:PFAM:PF00571" /note="PFAM: CBS domain containing protein; KEGG: cbe:Cbei_0644 CBS domain containing protein" /codon_start=1 /transl_table=11 /product="putative signal transduction protein with CBS domains" /protein_id="YP_002459041.1" /db_xref="GI:219668606" /db_xref="InterPro:IPR000644" /db_xref="GeneID:7259549" /translation="MRIGAVMEKEFVTVRETDPIENVLKIMTEKKVNGLPVVNEHNLL IGMVVKADIFRFMIQPGHIESCPVDWVMAKDVVSVHPDESVREAADKLLSNHIVAMPV VENSKVVGVVSVEDLLRYYSHR" gene complement(2780281..2781318) /locus_tag="Dhaf_2579" /db_xref="GeneID:7259550" CDS complement(2780281..2781318) /locus_tag="Dhaf_2579" /inference="similar to AA sequence:KEGG:lwe2095" /note="KEGG: lwe:lwe2095 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459042.1" /db_xref="GI:219668607" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7259550" /translation="MMTVKRIAIKLAIITALIFLSLASFSFYFYHMVIERKPNDPWSQ NTRLTSISMESNEVQTFPVMAMAISPASTELADSGDFSPTEQTPPSWVESQPYEFWTV TSEDGFRLAGYYIPARIPTTRTVIIAHGYRSQALEMGEFAKFYSEKLGYNVLLPDARG YGTSEGDFIGFGWPDRKDYLLWIQETTEKVGPDAQITLHGLSMGGATVMMVSGESLPE QVKVIVEDSGYTSVQDELAYQLKRMYNLPAFPLLPAVSLFTDIKAGYNFSEASSLRQV EKNQTPMLFIHGALDDFVPVEMALQLYDACKAEKKLYLAENAVHGMAFYTDRPAYEAI VEDFIGLFMGH" sig_peptide complement(2780281..2780361) /locus_tag="Dhaf_2579" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.910 at residue 27" gene 2781658..2782704 /locus_tag="Dhaf_2580" /db_xref="GeneID:7259551" CDS 2781658..2782704 /locus_tag="Dhaf_2580" /inference="protein motif:TFAM:TIGR01187" /note="KEGG: cno:NT01CX_1226 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter ATPase subunit" /protein_id="YP_002459043.1" /db_xref="GI:219668608" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005893" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259551" /translation="MSEEIIRLVNVTKEYDGVQVLDNINLYILRNEFITLLGPSGCGK TTTLRIIGGFENVTGGDILFEGKKINDVPPYKRKVNTVFQQYALFPHMNVFENIAFGL RIKKVDNKAIYAKVLQVMELMNLKGFEKRNIDSLSGGQRQRVAIARAIVNEPEVLLLD EPLAALDLKLRKEMQLELKRIQQRLGITFIFVTHDQEEALTMSDTVVVMNEGKIQQIG SPIDIYNEPKNVFVADFIGESNILDGVMLQDFLVHFHGRRFDCLDKGFSANEGVDVVI RPEDLKLVAAEEGMLTGEVQSVVFKGVHYEMMIQSSEFCWMVHSTQMEEVGNEVGLKI LPNDIHIMKKVKGD" gene 2782701..2783525 /locus_tag="Dhaf_2581" /db_xref="GeneID:7259552" CDS 2782701..2783525 /locus_tag="Dhaf_2581" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2539 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459044.1" /db_xref="GI:219668609" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259552" /translation="MKKKLLTAPYLLWMLIFTIVPLILVVYFSLFESGPEGIRFTAVH LERVFEPIYLKVILRSIWLALISTVFCLLLGYPMAMILASKGLKRRDFLIVLFVLPMW MNFLARTYAWMTLLENKGIINQLLAALSLPALNILYTDKAVILGMVYNFLPFMVLPIY SVLQKIDHSLIEAAEDLGATPYKTFFKVTFPLSLSGVASGIIMVFMPAVTTFVISRLL GGGQYMLIGNLIEQQFLTTGDWGFGSSLSLILMIFLLLTMGIMSKTDKDQEGGRFW" gene 2783522..2784313 /locus_tag="Dhaf_2582" /db_xref="GeneID:7259553" CDS 2783522..2784313 /locus_tag="Dhaf_2582" /EC_number="2.1.3.3" /inference="protein motif:PRIAM:2.1.3.3" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_1228 spermidine/putrescine ABC transporter, permease protein 2" /codon_start=1 /transl_table=11 /product="Ornithine carbamoyltransferase" /protein_id="YP_002459045.1" /db_xref="GI:219668610" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259553" /translation="MKSFLMKSYTFLIFFFLYAPILILMIFSFNDSKSRGNWDGFTLR WYIELFQDGQIASALYYTLVVAILASLIATLIGTLAAIGINNMHGFPKVITLNVTYLP MLSPDIVMGISLMLLFIFIKFKLGFITMLFAHITFNLPFVIFSVLPKLRQLNDDTYAA ALDLGATPFEAYKKVILPQISPGIVTGFLLAFTMSIDDFVVSFFTTGSGVSNLAITIY SMARRGINPKINALLTLMFIFIMIILVFVNYRMAKDKSNEKREMY" gene 2784310..2785359 /locus_tag="Dhaf_2583" /db_xref="GeneID:7259554" CDS 2784310..2785359 /locus_tag="Dhaf_2583" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: aoe:Clos_2537 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_002459046.1" /db_xref="GI:219668611" /db_xref="InterPro:IPR001188" /db_xref="InterPro:IPR006059" /db_xref="GeneID:7259554" /translation="MKKSVLKKAGAVVLLVAMLVGLAGCGGSDQAKLYVYNWGDYIDE SVLAEFEKTNNVDVIYEQFATNEEMYVKIKAGTAKYDVAIPSDYMITKMINEGLLHTI DMTAIPNYAKIDDRFKNLAFDPKNEYTVPYMWGTVGIIYNKTMVDGVVDSWDVLWDKK YTKQILMLDSQRDSIAVALKKLGYSLNSRDEKELEEAKQLLIEQKPLLMAYVGDEVKD KMIGNEAAMAVVWSGDAVFMKGENPDLEYVIPKEGSNIWYDAMVIPKTSQNKEMAEKF IDFMCSTDVAFKNADYIGYSTPQKEVRAMLPDDLTSDPAYYPAEGELKGSEVFEDLSD VLPIYDRIWTEVKSQ" sig_peptide 2784310..2784405 /locus_tag="Dhaf_2583" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.465 at residue 32" gene 2785381..2785629 /locus_tag="Dhaf_2584" /db_xref="GeneID:7259555" CDS 2785381..2785629 /locus_tag="Dhaf_2584" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459047.1" /db_xref="GI:219668612" /db_xref="GeneID:7259555" /translation="MVRYLRVKKFRKKKNAQPEVEQPKLMMDIIEEEYPEKYDTLKEK ISQLGRMFTQEEWLTILMRSRAEHERFLPKKGKREPKD" gene 2785821..2786183 /locus_tag="Dhaf_2585" /db_xref="GeneID:7259556" CDS 2785821..2786183 /locus_tag="Dhaf_2585" /inference="protein motif:PFAM:PF03733" /note="PFAM: protein of unknown function DUF307; KEGG: cth:Cthe_0457 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459048.1" /db_xref="GI:219668613" /db_xref="InterPro:IPR005185" /db_xref="GeneID:7259556" /translation="MNVLGNIIWLVFGGILAAIAWFLAGLILCITIIGIPFGLQCFKI AQFVLLPFGKDIELGNFGVGGLLLNILWILLFGWELAVGHLVIGLLLCLTVLGIPFGI QHFKFAQLAFIPFGAKIR" gene 2786268..2786456 /locus_tag="Dhaf_2586" /db_xref="GeneID:7259557" CDS 2786268..2786456 /locus_tag="Dhaf_2586" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459049.1" /db_xref="GI:219668614" /db_xref="GeneID:7259557" /translation="MEYKLEEREEICSVASKLVVLKIYRYPSADPNAEGEIADFHCNH SSDRCESRCTYKMLMNDY" gene 2786554..2787660 /locus_tag="Dhaf_2587" /db_xref="GeneID:7259558" CDS 2786554..2787660 /locus_tag="Dhaf_2587" /inference="protein motif:PFAM:PF00248" /note="PFAM: aldo/keto reductase; KEGG: cbe:Cbei_2881 aldo/keto reductase" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_002459050.1" /db_xref="GI:219668615" /db_xref="InterPro:IPR001395" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259558" /translation="MKKLGFGMMRLPLRAQENPQNIDQEQVNTMVDCFLERGFTYFDT AYRYHQGMSEIALRKALVERYARDSFTITDKMPASLVTKNGDYQRIFDEQLERCGVSY FDYYLLHALDAARYAATVEYGGFEFMRRLKAAGKVKHIGFSYHDKAALLDRILTEHPE MEYVQLQINYIDWEDEGIESRKCYEVATKHHKPVIVMEPVKGGALATVPEEAAQLFKG YHPDQSIASWAVRYAASLANVCMVLSGMSTLGQLMDNTSYMQNFITLKEEEQELIQKA IAIINNDIAIPCTACEYCVEGCPMQIPIPKYFALYNNQQRHGLSTQQTYYRNLTQDLG KASDCIRCQQCEQHCPQHIPIITKLEEVARVFDV" gene 2787694..2788326 /locus_tag="Dhaf_2588" /db_xref="GeneID:7259559" CDS 2787694..2788326 /locus_tag="Dhaf_2588" /inference="protein motif:PFAM:PF03358" /note="PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0948 NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_002459051.1" /db_xref="GI:219668616" /db_xref="InterPro:IPR005025" /db_xref="GeneID:7259559" /translation="MKVILVNGSPHKDGCTFTALEEVAKALNEEGIDTEFFHLGTKPL NGCIACGHCRKHQRCVFPDSVNEFLDLAQEADGFIFGSPVHYAAAGGAITSFLDRVFY TDSGSGKQAFYLKPAAAVVSARRAGTTASLDQLNKYFTIKEMPIISSKYWNMVHGNTP EEVRKDEEGLQIMRTLGRNMAWFLKCKEAGIRAGIPFPSQEEGLRTNFIR" gene 2788500..2789240 /locus_tag="Dhaf_2589" /db_xref="GeneID:7259560" CDS 2788500..2789240 /locus_tag="Dhaf_2589" /inference="protein motif:PFAM:PF06940" /note="PFAM: protein of unknown function DUF1287; KEGG: chy:CHY_2180 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1287" /protein_id="YP_002459052.1" /db_xref="GI:219668617" /db_xref="InterPro:IPR009706" /db_xref="GeneID:7259560" /translation="MYQCLRGGKLPKKSGYRSALIVGALLLLCTGCSKDSAPEIKRLE PILYLQVPTIECPVDKDQDGISDLEDIVAGGKEEVRKRPRYRDAYYAGGYPPENEGVC TDVIWRALHHAGYDLKAMIDEDIRQNTSLYPRVDEGRDANIDFRRVQNLKVFFQRHGQ ELTTEVIANDVDNLSQWQPGDIVTFALPHEHIAIISDRRRPDGIPFILHNGGPVASEE DRLLSWPSPITGHYRFPKFDGALMETAG" gene 2789335..2790198 /locus_tag="Dhaf_2590" /db_xref="GeneID:7259561" CDS 2789335..2790198 /locus_tag="Dhaf_2590" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: nth:Nther_1558 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_002459053.1" /db_xref="GI:219668618" /db_xref="InterPro:IPR000415" /db_xref="GeneID:7259561" /translation="MSVEEVPMSMIQQMKKRISVRTYKEEFLHPELKEKLNLAFKDNQ GPFGGAVRFEFVERELAQKEGNIKLGTYGIIKGASSYVVAAIPEGKRDLEDFGYVLEK LILYATSLGLGTCWLGGTYTKNEFSKAIGLQAGEIMPCITPIGYPHQKRSLLESAMRL AAGSKNRKPWQELFFNQALGRPLTEAEADNYATPLEMVRLAPSASNKQPWRIIMAQGR AHFYLQRTKDYGKGLGFDIQRVDMGIAMCHFELAAKELGLPGQWQIIESKADAAESTI PPGTHYIVSWV" gene 2790355..2790852 /locus_tag="Dhaf_2591" /db_xref="GeneID:7259562" CDS 2790355..2790852 /locus_tag="Dhaf_2591" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: cdf:CD0688 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="YP_002459054.1" /db_xref="GI:219668619" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7259562" /translation="MASNALNSLLNPVRMNILQLFLENETETVKRIAEELPDLPPASL YRHVNKLVEDEIIEVCAEYKIRGTVEKVYRLKNDPSLHFYAFAMTLLRDFDKYLQSKD YDLVQDRIDFQSYALYLSDQECDELAQTLRETLHKMADTKSGGGERRLRKFSFAVIPG DEKGK" gene 2790937..2792295 /locus_tag="Dhaf_2592" /db_xref="GeneID:7259563" CDS 2790937..2792295 /locus_tag="Dhaf_2592" /inference="protein motif:PFAM:PF00324" /note="PFAM: amino acid permease-associated region; KEGG: ckl:CKL_3404 hypothetical protein" /codon_start=1 /transl_table=11 /product="amino acid permease-associated region" /protein_id="YP_002459055.1" /db_xref="GI:219668620" /db_xref="InterPro:IPR004841" /db_xref="GeneID:7259563" /translation="MDYELQKKYGLFTAIAMVIGIVIGSGVFFKAEKILLATGGDLPL GILAWVIGGMIMIVCAYVFATMATRYEKVNGVVDYAEATMGRGYAYILGWFMTTIYYP AITSVLAWVSARYTCVLLGWDIVGAEAMAIAGFYLVGSYALNALSPKLAGKFQVSTTI IKLIPLILMAILGTITGLSNGVLVKNFTSGVIADVSTTNPLFTAVVATAFAYEGWIIA TSINAELRDAKKNLPRALTFGTMFVALIYILYYTGLAGAVENSVIMEGGETGAKIAFS TVFSNLGGSVLFVFVVISCLGTLNGLMLGCTRGFYSLAARDLGPQPHIYKNIDANTNM PTNSAIMGLLFTAGWLLYFFGANLVPESWFGPFSFDSSELPIVTLYVMYIPIFIMMMV KEQSLGGFKRFIMPTLAIFACIFMVIAAIYAHRWAVLYYLILFIVVMAVGGIFYFTKK PH" gene complement(2792411..2793841) /locus_tag="Dhaf_2593" /db_xref="GeneID:7259564" CDS complement(2792411..2793841) /locus_tag="Dhaf_2593" /inference="protein motif:PFAM:PF00877" /note="PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; G5 domain protein; KEGG: tpd:Teth39_0101 peptidase M23B" /codon_start=1 /transl_table=11 /product="NLP/P60 protein" /protein_id="YP_002459056.1" /db_xref="GI:219668621" /db_xref="InterPro:IPR000064" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR011098" /db_xref="GeneID:7259564" /translation="MHFKESLSRFKVSASDQVQKIAKNVSWKSPRVLGSLTVTLVLTG SLGFYFLTTTAAAAVMINGQQVGYVADSQSGQTLVDTFLQEKGEPYGVVAKTRDQINY ENVRIKNSAYKASEIKEENLASSLNYYLEGYKVLANGTPIAYLPSKEEADKLLKQYEE YYSKSSDENKITSVSFLEDITIEKVSIQPSQMTSLELAYEQLIEGQVTTKEYTVEEKD SWWLIARKNNMLTAEVLAGNPGATEDTVIKPGDVLKLVTVEPYLTVVSQGTYSGQEII PYDVVTKTDYKLNPGQTKVVTKGSNGSKIVTYSYEQRNGVEVAKKVLDEKIVEKPVDE VVAKGPSKQTVNVASATSRGSANGSSLVERALSFQGTKYVFGGTSTSGFDCSGFTKYI YSGSGISLPRTSFDQFNSGSSVSKDNLQAGDLVFFSTYASGASHVGIYIGNGKFVHAA NPGSGVKVSGVSDSFYGPRYLGARRY" sig_peptide complement(2792411..2792584) /locus_tag="Dhaf_2593" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.945) with cleavage site probability 0.811 at residue 58" gene 2794154..2795089 /locus_tag="Dhaf_2594" /db_xref="GeneID:7259565" CDS 2794154..2795089 /locus_tag="Dhaf_2594" /inference="protein motif:PFAM:PF08378" /note="PFAM: NERD domain protein; KEGG: pcr:Pcryo_1847 DNA topoisomerase I" /codon_start=1 /transl_table=11 /product="NERD domain protein" /protein_id="YP_002459057.1" /db_xref="GI:219668622" /db_xref="InterPro:IPR011528" /db_xref="GeneID:7259565" /translation="MTRGIALFFWNRKKATKKISPEPEAAQEVWQRKKYRTNYYTYNS AKERGSLRSKKQRKHEIGEYKLEVGLAHLPRCFRRLSNLLLGTKGRFHQIDHVLISPY GIFLLEANNLSGLIVGEETESKWYQAITWRVKTFPNPIMENQVRVQMLQELAGLDQTI PVFSYVTFNRSCSLKVFSGMVFYDIDLPASIMQLAQNQPAVLSDEEILELVERIEKIN LTDLGLRNEYAARQRRERMQYRPKYGDIRCSICQKAVNERMARYCLNRPEKFAWKIYC EKHQREMTRVVRREGGREGHGPYPESTDSKKESMD" gene 2795040..2795438 /locus_tag="Dhaf_2595" /db_xref="GeneID:7259566" CDS 2795040..2795438 /locus_tag="Dhaf_2595" /inference="protein motif:PFAM:PF01894" /note="PFAM: protein of unknown function UPF0047; KEGG: bay:RBAM_028360 YugU" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0047" /protein_id="YP_002459058.1" /db_xref="GI:219668623" /db_xref="InterPro:IPR001602" /db_xref="GeneID:7259566" /translation="MVHILNLQTQKRNQWIDITSLIEGFLQNFQFKDGVAIIYCPHTT AGITINENADPDVCRDLLRRLDELCPWDMAQDRHGEGNSAAHLKASLMGSSQTVIVKD GRLLLGRWQGVYFCEFDGPRSRQCFVKFIG" gene 2795567..2796511 /locus_tag="Dhaf_2596" /db_xref="GeneID:7259567" CDS 2795567..2796511 /locus_tag="Dhaf_2596" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: stl:stu1623 drug/metabolite transporter (DMT) superfamily protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002459059.1" /db_xref="GI:219668624" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7259567" /translation="MNELIVVKGEEKAQNIRTKAVRGTILTLIGGISWGFSGACGQYL FSVKGIDPHWVTVVRMLTAGLLLFCLVLFKYREQMVGLLSNKRDRRTLIVFSIFGLIA CQYTYLLAISHSNAGTATVLQYLGPLLIMIFVCGMDRRLPTKTEGVAIALAVTGTFLL ATHGNVSNLVISTQGLFWGLMAALGLMLYTIIPGKIINKWGSIVVTGCGMLMGGSILL VVIRPWQIPVSLDWQVFWGMLAIIVIGTVVSFTLYLQGVSDIGPVKASMIASVEPVSA ALFSAFWLNTAFVWIDMVGFALIITTVILLTRQGSSRD" gene complement(2796500..2797153) /locus_tag="Dhaf_2597" /db_xref="GeneID:7259568" CDS complement(2796500..2797153) /locus_tag="Dhaf_2597" /EC_number="1.15.1.1" /inference="protein motif:PRIAM:1.15.1.1" /note="PFAM: manganese and iron superoxide dismutase; KEGG: pth:PTH_1999 superoxide dismutase" /codon_start=1 /transl_table=11 /product="Superoxide dismutase" /protein_id="YP_002459060.1" /db_xref="GI:219668625" /db_xref="InterPro:IPR001189" /db_xref="GeneID:7259568" /translation="MQFLSVPPGQHRLPGLPYAYNALEPVISAHVLNLHYNQHHKSYV EGLNKAELALVDARQRQDFSLVKHWERELAFHGSGHILHSLYWTSMAPSGMGQGTPGP HTLTHMVNYFGSFHSFKEQFTSAANQVEASGWALLVWQPAWCRLEILTIEKHQNLYQA GGIPILVIDSWEHAYYLDYQNRRGDYVNNWWHIVNWYGVERRLEHAMQLLFPMALIP" gene 2797476..2797551 /locus_tag="Dhaf_R0030" /note="tRNA-Glu1" /db_xref="GeneID:7259569" tRNA 2797476..2797551 /locus_tag="Dhaf_R0030" /product="tRNA-Glu" /db_xref="GeneID:7259569" gene 2797558..2797633 /locus_tag="Dhaf_R0031" /note="tRNA-Val3" /db_xref="GeneID:7259570" tRNA 2797558..2797633 /locus_tag="Dhaf_R0031" /product="tRNA-Val" /db_xref="GeneID:7259570" gene 2797640..2797715 /locus_tag="Dhaf_R0032" /note="tRNA-Asp2" /db_xref="GeneID:7259571" tRNA 2797640..2797715 /locus_tag="Dhaf_R0032" /product="tRNA-Asp" /db_xref="GeneID:7259571" gene 2797742..2797825 /locus_tag="Dhaf_R0033" /note="tRNA-Tyr2" /db_xref="GeneID:7259572" tRNA 2797742..2797825 /locus_tag="Dhaf_R0033" /product="tRNA-Tyr" /db_xref="GeneID:7259572" gene 2797834..2797908 /locus_tag="Dhaf_R0034" /note="tRNA-Met2" /db_xref="GeneID:7259573" tRNA 2797834..2797908 /locus_tag="Dhaf_R0034" /product="tRNA-Met" /db_xref="GeneID:7259573" gene 2797946..2798020 /locus_tag="Dhaf_R0035" /note="tRNA-Gln1" /db_xref="GeneID:7259574" tRNA 2797946..2798020 /locus_tag="Dhaf_R0035" /product="tRNA-Gln" /db_xref="GeneID:7259574" gene 2798026..2798101 /locus_tag="Dhaf_R0036" /note="tRNA-Lys2" /db_xref="GeneID:7259575" tRNA 2798026..2798101 /locus_tag="Dhaf_R0036" /product="tRNA-Lys" /db_xref="GeneID:7259575" gene 2798128..2798202 /locus_tag="Dhaf_R0037" /note="tRNA-Gly2" /db_xref="GeneID:7259576" tRNA 2798128..2798202 /locus_tag="Dhaf_R0037" /product="tRNA-Gly" /db_xref="GeneID:7259576" gene 2798209..2798285 /locus_tag="Dhaf_R0038" /note="tRNA-Arg2" /db_xref="GeneID:7259577" tRNA 2798209..2798285 /locus_tag="Dhaf_R0038" /product="tRNA-Arg" /db_xref="GeneID:7259577" gene 2798310..2798385 /locus_tag="Dhaf_R0039" /note="tRNA-Thr3" /db_xref="GeneID:7259578" tRNA 2798310..2798385 /locus_tag="Dhaf_R0039" /product="tRNA-Thr" /db_xref="GeneID:7259578" gene 2798394..2798478 /locus_tag="Dhaf_R0040" /note="tRNA-Leu3" /db_xref="GeneID:7259579" tRNA 2798394..2798478 /locus_tag="Dhaf_R0040" /product="tRNA-Leu" /db_xref="GeneID:7259579" gene 2798493..2798583 /locus_tag="Dhaf_R0041" /note="tRNA-Ser4" /db_xref="GeneID:7259580" tRNA 2798493..2798583 /locus_tag="Dhaf_R0041" /product="tRNA-Ser" /db_xref="GeneID:7259580" gene 2798599..2798673 /locus_tag="Dhaf_R0042" /note="tRNA-Asn1" /db_xref="GeneID:7259581" tRNA 2798599..2798673 /locus_tag="Dhaf_R0042" /product="tRNA-Asn" /db_xref="GeneID:7259581" gene 2798675..2798751 /locus_tag="Dhaf_R0043" /note="tRNA-Met3" /db_xref="GeneID:7259582" tRNA 2798675..2798751 /locus_tag="Dhaf_R0043" /product="tRNA-Met" /db_xref="GeneID:7259582" gene 2798757..2798830 /locus_tag="Dhaf_R0044" /note="tRNA-Gly3" /db_xref="GeneID:7259583" tRNA 2798757..2798830 /locus_tag="Dhaf_R0044" /product="tRNA-Gly" /db_xref="GeneID:7259583" gene 2799030..2799845 /locus_tag="Dhaf_2598" /db_xref="GeneID:7259584" CDS 2799030..2799845 /locus_tag="Dhaf_2598" /inference="protein motif:PFAM:PF06445" /note="PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: cdf:CD0616 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002459061.1" /db_xref="GI:219668626" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7259584" /translation="MFKIGEFSKLTQVSIRMLRYYDETGLLKPAEIDKLTSYRLYSAN QISLLNKILFLRDLGFSVSEIGLALDRWNDGFITNLLDNKRLDIENTIKSAQDKLSKI ELAKRDIRQEKIAIHYNVSIKSIPSYQVFSLRRIVSDYYAEGLLWKEMSAFANENDIP ISDNTFTIYHDTDYREKNVDIEVCAPVARMGKDMNPFTYRNTEPVPIMACTMVCGPFE NIAGAYLSLAEWLGEHSQYRMTGQSRQIVHRGPWNEETPDKYLTEIQIPLIKI" gene 2799960..2800436 /locus_tag="Dhaf_2599" /db_xref="GeneID:7259585" CDS 2799960..2800436 /locus_tag="Dhaf_2599" /inference="protein motif:PFAM:PF01980" /note="PFAM: protein of unknown function UPF0066; KEGG: cdf:CD1397 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0066" /protein_id="YP_002459062.1" /db_xref="GI:219668627" /db_xref="InterPro:IPR001378" /db_xref="GeneID:7259585" /translation="MQNFKVKPIGKISVNEDGMFIKLEQEYIPALQALNGFSHLNVLW WLSDSDNEEMRNILIAEQPYKKAPAIMGIFATRSPFRPNPMALTAVQIITIDYENGVI QIAYIDANDNSPVLDIKPYTPSLDRVETPGVPEWCCHWPKSLEESGNFDWGNEFNF" gene 2800627..2800702 /locus_tag="Dhaf_R0045" /note="tRNA-Glu2" /db_xref="GeneID:7259586" tRNA 2800627..2800702 /locus_tag="Dhaf_R0045" /product="tRNA-Glu" /db_xref="GeneID:7259586" gene 2800709..2800784 /locus_tag="Dhaf_R0046" /note="tRNA-Val4" /db_xref="GeneID:7259587" tRNA 2800709..2800784 /locus_tag="Dhaf_R0046" /product="tRNA-Val" /db_xref="GeneID:7259587" gene 2800791..2800866 /locus_tag="Dhaf_R0047" /note="tRNA-Asp3" /db_xref="GeneID:7259588" tRNA 2800791..2800866 /locus_tag="Dhaf_R0047" /product="tRNA-Asp" /db_xref="GeneID:7259588" gene 2800893..2800976 /locus_tag="Dhaf_R0048" /note="tRNA-Tyr3" /db_xref="GeneID:7259589" tRNA 2800893..2800976 /locus_tag="Dhaf_R0048" /product="tRNA-Tyr" /db_xref="GeneID:7259589" gene 2800985..2801059 /locus_tag="Dhaf_R0049" /note="tRNA-Met4" /db_xref="GeneID:7259590" tRNA 2800985..2801059 /locus_tag="Dhaf_R0049" /product="tRNA-Met" /db_xref="GeneID:7259590" gene 2801097..2801171 /locus_tag="Dhaf_R0050" /note="tRNA-Gln2" /db_xref="GeneID:7259591" tRNA 2801097..2801171 /locus_tag="Dhaf_R0050" /product="tRNA-Gln" /db_xref="GeneID:7259591" gene 2801177..2801252 /locus_tag="Dhaf_R0051" /note="tRNA-Lys3" /db_xref="GeneID:7259592" tRNA 2801177..2801252 /locus_tag="Dhaf_R0051" /product="tRNA-Lys" /db_xref="GeneID:7259592" gene 2801279..2801353 /locus_tag="Dhaf_R0052" /note="tRNA-Gly4" /db_xref="GeneID:7259593" tRNA 2801279..2801353 /locus_tag="Dhaf_R0052" /product="tRNA-Gly" /db_xref="GeneID:7259593" gene 2801360..2801436 /locus_tag="Dhaf_R0053" /note="tRNA-Arg3" /db_xref="GeneID:7259594" tRNA 2801360..2801436 /locus_tag="Dhaf_R0053" /product="tRNA-Arg" /db_xref="GeneID:7259594" gene 2801461..2801536 /locus_tag="Dhaf_R0054" /note="tRNA-Thr4" /db_xref="GeneID:7259595" tRNA 2801461..2801536 /locus_tag="Dhaf_R0054" /product="tRNA-Thr" /db_xref="GeneID:7259595" gene 2801545..2801629 /locus_tag="Dhaf_R0055" /note="tRNA-Leu4" /db_xref="GeneID:7259596" tRNA 2801545..2801629 /locus_tag="Dhaf_R0055" /product="tRNA-Leu" /db_xref="GeneID:7259596" gene 2801644..2801734 /locus_tag="Dhaf_R0056" /note="tRNA-Ser5" /db_xref="GeneID:7259597" tRNA 2801644..2801734 /locus_tag="Dhaf_R0056" /product="tRNA-Ser" /db_xref="GeneID:7259597" gene 2801750..2801824 /locus_tag="Dhaf_R0057" /note="tRNA-Asn2" /db_xref="GeneID:7259598" tRNA 2801750..2801824 /locus_tag="Dhaf_R0057" /product="tRNA-Asn" /db_xref="GeneID:7259598" gene 2801826..2801902 /locus_tag="Dhaf_R0058" /note="tRNA-Met5" /db_xref="GeneID:7259599" tRNA 2801826..2801902 /locus_tag="Dhaf_R0058" /product="tRNA-Met" /db_xref="GeneID:7259599" gene 2801908..2801981 /locus_tag="Dhaf_R0059" /note="tRNA-Gly5" /db_xref="GeneID:7259600" tRNA 2801908..2801981 /locus_tag="Dhaf_R0059" /product="tRNA-Gly" /db_xref="GeneID:7259600" gene complement(2802055..2802447) /locus_tag="Dhaf_2600" /db_xref="GeneID:7259601" CDS complement(2802055..2802447) /locus_tag="Dhaf_2600" /inference="protein motif:PFAM:PF02629" /note="PFAM: CoA-binding domain protein; KEGG: tpd:Teth39_1005 CoA-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_002459063.1" /db_xref="GI:219668628" /db_xref="InterPro:IPR003781" /db_xref="GeneID:7259601" /translation="MQNDIQEFLDQEIWAVVGVSKDPTKFGTKVYHKLKQCGYTVYPI NPKLSELDGEPCFPSLSALPVRPDVVSLIVPPQISEQIIDQCAQLGIKRVWMQPGAES DEALMKGRANQMQLIAHECVLVEARSRR" misc_binding 2802607..2802794 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 101.99" /bound_moiety="adenosylcobalamin" gene 2802975..2803715 /locus_tag="Dhaf_2601" /db_xref="GeneID:7259602" CDS 2802975..2803715 /locus_tag="Dhaf_2601" /inference="protein motif:TFAM:TIGR00123" /note="catalyzes the ATP-dependent transport of cobalt" /codon_start=1 /transl_table=11 /product="cobalt transport protein CbiM" /protein_id="YP_002459064.1" /db_xref="GI:219668629" /db_xref="InterPro:IPR002751" /db_xref="GeneID:7259602" /translation="MNKRIQLFIGLVLMMFFIPYKASAMHIMEGFLQPGWAIAWGALA IPFVVLGIFSIKKTISLNPRLKILLAMAGAFVFVLSALKLPSVTGSCSHPTGVGFGAI LFGPTAMAVIGVIVLLFQALLLAHGGLTTLGANTFSMAVVGPFVAFGVYKLVQKFKGP QWLGVFLAASLGDLATYVMTSIQLALAFPSEVGGFAASLTKFASIFAVTQIPLAISEG ILTVIIFNALASYGKSELQDLKLLTKEV" sig_peptide 2802975..2803043 /locus_tag="Dhaf_2601" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.904) with cleavage site probability 0.413 at residue 23" gene 2803718..2804029 /locus_tag="Dhaf_2602" /db_xref="GeneID:7259603" CDS 2803718..2804029 /locus_tag="Dhaf_2602" /inference="protein motif:TFAM:TIGR01165" /note="TIGRFAM: cobalt transport protein; PFAM: Cobalt transport protein CbiN; KEGG: cpf:CPF_0186 cobalt transport protein CbiN" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_002459065.1" /db_xref="GI:219668630" /db_xref="InterPro:IPR003705" /db_xref="GeneID:7259603" /translation="MANSGVEQTKRSTFKVNVLLFLLVVAITVIPLVLVQDAEFGGAD GLAEEEILNIQEDYEPWFSPFFEPASGEIESLLFALQAGLGAGVIGFGLGYYKGRSKH D" gene 2804108..2804878 /locus_tag="Dhaf_2603" /db_xref="GeneID:7259604" CDS 2804108..2804878 /locus_tag="Dhaf_2603" /inference="protein motif:TFAM:TIGR02454" /note="TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cpr:CPR_0184 cobalt ABC transporter, permease protein CbiQ" /codon_start=1 /transl_table=11 /product="cobalt ABC transporter, inner membrane subunit CbiQ" /protein_id="YP_002459066.1" /db_xref="GI:219668631" /db_xref="InterPro:IPR003339" /db_xref="InterPro:IPR012809" /db_xref="GeneID:7259604" /translation="MLNTDTYAYASRLKTIDPMQKFIVAFLTLGVCLWADQLFVSIAV IMFMSGVAIFFGGAPLSVWLKLMIIPMSFLMIGIFTIAVNISRDVYSFLWAYSIAGYW VGISENGIREGVNLFFRVLGSVSCLYFLSLSTPMVDLLSVLRRLRLPKLMVEMMGLIY RFIFVLLETAGTMLTAQNSRLGYVNLKTGYRSMGSLVSVLFIRAYKRSNELYTSLEAR GYDGEIKVLEESYENNRNLVLLAVVINGAFVFLTLFLK" gene 2804909..2805775 /gene="cbiO" /locus_tag="Dhaf_2604" /db_xref="GeneID:7259605" CDS 2804909..2805775 /gene="cbiO" /locus_tag="Dhaf_2604" /inference="protein motif:TFAM:TIGR01166" /note="with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene" /codon_start=1 /transl_table=11 /product="cobalt transporter ATP-binding subunit" /protein_id="YP_002459067.1" /db_xref="GI:219668632" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005876" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259605" /translation="MKESIMPDNIMHLKDLHYHYPDGTHALKGINIVIPKGQVTALLG GNGAGKSTLFQHLNGILKPSSGEVFFGGQPVDYSRKGLMNLRQAVGMVFQDPDNQLFS ASVYQDVSYGVLNLQLPKDEVQRRVEHALARTGISHLRHKPTHALSFGQKKRAAIAGV LAMEPQVLVLDEPTAGLDPKGISEIMELLLETLKGMDLTILIATHDIDIVPLYCDRVF VMDEGTVVLEGTCSEVFAKREMLRSVNLRLPRIGHLMEILKFKDGLAMDEIPMTISGA RKVLKNLQQGKA" gene 2805820..2805894 /locus_tag="Dhaf_R0060" /note="tRNA-Gly6" /db_xref="GeneID:7259606" tRNA 2805820..2805894 /locus_tag="Dhaf_R0060" /product="tRNA-Gly" /db_xref="GeneID:7259606" gene complement(2806168..2806431) /locus_tag="Dhaf_2605" /db_xref="GeneID:7259607" CDS complement(2806168..2806431) /locus_tag="Dhaf_2605" /inference="protein motif:TFAM:TIGR02116" /note="TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: tde:TDE0662 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module toxin, Txe/YoeB family" /protein_id="YP_002459068.1" /db_xref="GI:219668633" /db_xref="InterPro:IPR009614" /db_xref="GeneID:7259607" /translation="MIKVWSDEAWEDYLYWQTQDKKTLNRINRLIQDIDRNGHTGIGK AEPLKHEYHGCWSKRIDETNRLVYRIENGRLEILQCRTHYGDK" gene complement(2806424..2806693) /locus_tag="Dhaf_2606" /db_xref="GeneID:7259608" CDS complement(2806424..2806693) /locus_tag="Dhaf_2606" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: fma:FMG_1585 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_002459069.1" /db_xref="GI:219668634" /db_xref="InterPro:IPR007337" /db_xref="GeneID:7259608" /translation="MAQTTLNVRIDESVKQQFDAFCTDVGMNSSVAVNLFVKAVLRER RIPFEIAASDDPFYFQANQERLKKSLEQLNAGKGTVHELIEVTGD" gene complement(2806819..2807072) /locus_tag="Dhaf_2607" /pseudo /db_xref="GeneID:7259609" gene complement(2807194..2808108) /locus_tag="Dhaf_2608" /db_xref="GeneID:7259610" CDS complement(2807194..2808108) /locus_tag="Dhaf_2608" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459070.1" /db_xref="GI:219668635" /db_xref="GeneID:7259610" /translation="MTPVLLYWNHVCILHNQEKNFLEGLTARLREEGIALEVRYFGLG YPEHMSEYLARPDAVLPDLIVSADLEVFEDSRIFKKLERDLYPAATWLPLRQGPALDS VRRGTRLLPFLSIPLVYYTKDTSHCAGKRLSELKGLAFGGINNSAGKTLVKAVWSRYG RGAALSLLESGAVSDMPIGAFQQVRLGQSPTALVPSLYALRADGERSFLRRPAEGPLL IPSYFCARNSIPEGAARRIAAEILCPELCDFYVENGDLILYPSCTTGHSRQEGARYFT PAPEWYETVSAEEFYALYGAMLPTAHIP" gene complement(2808105..2808848) /locus_tag="Dhaf_2609" /db_xref="GeneID:7259611" CDS complement(2808105..2808848) /locus_tag="Dhaf_2609" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mae:Maeo_0154 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459071.1" /db_xref="GI:219668636" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259611" /translation="MNTITILGGRDKAGKAEGLDPLILKKGEIYTIVGNTGSGKSRLI KDVEQLADGDSITGRRVLLDGKPVPRRERQAVSAGLVAHLGQNMRFMLDISVGDFVSL HARCRGKQVGLEAVLNLANCITPEPVVPEQHLNLLSGGQARALMIADLALICDSPVVL IDEIENAGIDKEKALELLRRQDKLVLVVTHDPHTALMAERRIVMGGGAVRAVVERTKE ELTLFALLSRDYQRQRERQTLLRKGEHLI" gene complement(2808845..2809549) /locus_tag="Dhaf_2610" /db_xref="GeneID:7259612" CDS complement(2808845..2809549) /locus_tag="Dhaf_2610" /inference="similar to AA sequence:KEGG:MmarC7_1275" /note="KEGG: mmz:MmarC7_1275 cobalamin synthesis protein P47K" /codon_start=1 /transl_table=11 /product="cobalamin synthesis protein P47K" /protein_id="YP_002459072.1" /db_xref="GI:219668637" /db_xref="GeneID:7259612" /translation="MPKKNILFSGSSAVGKTAVIKALIPTLLAGGALPCVCKIDCLQT GDAQVYQDIGLPCVTGLSGDICPDHFLVSNLPELWNWADEQHKDTLLIETAGLCHRCS PATEGMTAGCVLDCTSSCRAPAQLGPMITQADFVVLTKIDMVSQAEREIITWQVQQLN PRAVLFPVDGLAGYGADPLAQWLLEHEDGSEFENDRLRHTMPSGVCSYCVGEQRVGSA YQQGVVGKINFKEAEQ" gene 2809726..2810397 /locus_tag="Dhaf_2611" /db_xref="GeneID:7259613" CDS 2809726..2810397 /locus_tag="Dhaf_2611" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; KEGG: csc:Csac_1623 cyclic nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002459073.1" /db_xref="GI:219668638" /db_xref="InterPro:IPR000595" /db_xref="GeneID:7259613" /translation="MTRQQILSSIETSPLLQGCGIDPGLMLVHRYRGGQIVSDRPAGI TSVGLVVEGIVDVYSVALDGRDVQLNALEAGDCFGICNLLALAEMETVLRCRTDTTLI FIPKQVLVSVMEKDPAFALRYAALCNRKIQFLIRRIEMLTIQSCRGKVIGYLLSQQDK AGRVIPDCSREDLARRLDVSRAALFRELAFLQSQGLLALVDKEIVIVDQAGLEHILYQ PSGSK" gene 2810420..2811463 /locus_tag="Dhaf_2612" /db_xref="GeneID:7259614" CDS 2810420..2811463 /locus_tag="Dhaf_2612" /inference="similar to AA sequence:KEGG:Cphy_3870" /note="KEGG: cpy:Cphy_3870 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459074.1" /db_xref="GI:219668639" /db_xref="GeneID:7259614" /translation="MKKLLSVLLSLVMTGALLTGCGSPAAPAATPAENPAETPLETPA ADPVDVKVLALKGPTAMGMVKFMNDADAGTITDNRYQFSIVAAVDEVTPKLVQGGADI AAVPANLAAVLYNNTKGGVKVLAINTLGVLYIVESGNTVSSVEDLRGKTIYASGKGAT PEYALNYVLAENGIDPAKDVTIEWKSEHAECVAALAASENAIAMLPQPFVTTAQTKNQ GIRVALDLTKEWDTIQAGGANPSALITGVVVARTEFIKEHPEAVAAFLDHYKDSVDFV NGNTEDAAALVEKYAIVPAAVAVKALPACNITFAEGSGMKDKLSGYLTVLFEQNPKSV GGTLPADEFYYSR" sig_peptide 2810420..2810509 /locus_tag="Dhaf_2612" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.952 at residue 30" gene 2811441..2812217 /locus_tag="Dhaf_2613" /db_xref="GeneID:7259615" CDS 2811441..2812217 /locus_tag="Dhaf_2613" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3841 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459075.1" /db_xref="GI:219668640" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259615" /translation="MNSTTAGKGKGKPRIIKVWAVLLWVALWQAGSMALGQEILLVSP VSVLQRLVVLAEVADFWHSIAFSLGRIASGFLLATAAGVILAALSARFQRIQELLAPA MLTIKAIPVASFIILVLIWVPSRNLSVLISFLMVLPIIYTNVLDGIKATDPQLLEMAR LFDLPPGRTMRYIYLSQVLPFFRAACSVTLGLCWKSGIAAEVIGIPQGSIGEKLYHAK IYLDTPDLFAWTLVIVLISLVFEKLFLALVDRGVARLERM" sig_peptide 2811441..2811551 /locus_tag="Dhaf_2613" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.902) with cleavage site probability 0.478 at residue 37" gene 2812226..2812798 /locus_tag="Dhaf_2614" /db_xref="GeneID:7259616" CDS 2812226..2812798 /locus_tag="Dhaf_2614" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_3840 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459076.1" /db_xref="GI:219668641" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259616" /translation="MAIILDRLCKSYGENLVLSNFSALIPRGRTTCIMAPSGRGKTTL LRILMGLEEPDSGAVSGLAGLRRSAVFQEDRLCENLSPVANIRLVCPHREKREIVAAM ESVGLKGCASQPVRELSGGMRRRVSILRALLADYDILFLDEPFKGLDTGTKALVMEDA RRRSEGKTVLLVTHDPTEADALAACERIGF" gene 2813040..2813240 /locus_tag="Dhaf_2615" /db_xref="GeneID:7259617" CDS 2813040..2813240 /locus_tag="Dhaf_2615" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459077.1" /db_xref="GI:219668642" /db_xref="GeneID:7259617" /translation="MIAPTFTRDELQSKPLEKLMEAFGFKTFSRWTHQSYQDFLRNQG LTICSEAVITGHKFPISFIVCR" gene 2813336..2813986 /locus_tag="Dhaf_2616" /db_xref="GeneID:7259618" CDS 2813336..2813986 /locus_tag="Dhaf_2616" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: bld:BLi01946 YqeD" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002459078.1" /db_xref="GI:219668643" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7259618" /translation="MSRKKLTSAIVLLFSLVIIGLLYPHIQHPDLFQDLILELGWKGV LLDLLALSLLMFFPIIPFALLAGINIVIYGWSAGFLLSLTGSLLGSSLAFFISRLLGQ EWARSHLNKLGKWGKLSDSKNFSLIILARLIFVLPAAAVNYAAGVSPIRFRSFFLATL IGNIPIILWESWFGHDFWHLLQYPRRFSLALLTGAVIFGSAWLLWQYIDRQEKPST" sig_peptide 2813336..2813398 /locus_tag="Dhaf_2616" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.606) with cleavage site probability 0.581 at residue 21" gene 2814044..2816065 /locus_tag="Dhaf_2617" /db_xref="GeneID:7259619" CDS 2814044..2816065 /locus_tag="Dhaf_2617" /inference="protein motif:PFAM:PF02384" /note="PFAM: N-6 DNA methylase; KEGG: hpj:jhp0430 type II DNA modification (methyltransferase" /codon_start=1 /transl_table=11 /product="N-6 DNA methylase" /protein_id="YP_002459079.1" /db_xref="GI:219668644" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR003356" /db_xref="GeneID:7259619" /translation="MTSEGLIELNEVCDLLSISKATAINWIKNSTLKPSDSGEKRNLF FKKDIEALLLELKDGSNSKLKSRRNKNYIRGTFIPRTYIQNKKGIENVENIIAHMNCV DLPEDYERVILAEYALKLLFNRGLFSTESGEFPRHCLLSFYLQSKQLFGSYSMLIDDL LENVSDLEGQILHLKTALSLPMDYIEEQDLLGLLYMSLQNAGERKSRGVYYTPLAVVK DSVDHLEPFLHEKIRLLDPCCGTGNFLMHVYKYIKNLDGIYGYDISPLSVSLTRINMA LISKTDNLEVLYKNFLCKDPLARKSNLEFDVIIGNPPWGFNYDAEARQALKKAYVSAR KKTVESFAVFTEYALKTAIDGGIVSFVLPQSLLNVKIHQPLRDYLVDHAKIKRIRYWD DAFDGVQCPAMALTLQKKHQGFEIKGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEI SLIKRIESPGKVVYLKDHADFALGIVTGDNKRFLSNIQSDDREVIYRGSDVYKYRCLP GQNFIRFEPKSFQQIAPIDLYRAKEKLIYRFIGGSLVFAYDNSQTLTLNSANIVIPKL EGLNIKYILAILNSRVIQYYYSKCFRSVKVLRSSLARLPIPLVDKQQQSSIIEKVDKL LACNVPLHISPYYEEIDAAIKAVFDLSDKEYAFIKADLSHKNLYLYNPK" gene 2816292..2816978 /locus_tag="Dhaf_2618" /db_xref="GeneID:7259620" CDS 2816292..2816978 /locus_tag="Dhaf_2618" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: drm:Dred_3227 CRP/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002459080.1" /db_xref="GI:219668645" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7259620" /translation="MQANRSYCIVPDNFYPVRSFQKYVSEGVVCKYSRGDTIVLPGES IEKVIYVHSGKVSLYFLEEKKEKLMYYARRHCVINRLFAFEMAALSHIVAEEDSEVCF FSERQLFEIFKQDEEAHREFLKNFTNKCGFFMNVSKEMDIYSPTSRVLRFIDELCTTQ GKLVNYGYEIDLKLTQKTISEITGVHPVTVCKILGWLKEEGVLRKTSKKILIYDLPKL KKLINHSINC" gene 2817390..2817785 /locus_tag="Dhaf_2619" /db_xref="GeneID:7259621" CDS 2817390..2817785 /locus_tag="Dhaf_2619" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459081.1" /db_xref="GI:219668646" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259621" /translation="MDRREFFKLVGVAAAATGAASAGITGYLNAIDPAAKTGWEKEAY DPEKGRFDRTPFEIDHMPFNKVGTPKRVEKYADTMLRRTNLSRAFDVPEGMPFEDYLK TAVDVNDLTKTPLSILKDKDLVGILSGCP" sig_peptide 2817390..2817458 /locus_tag="Dhaf_2619" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.501 at residue 23" gene 2817862..2818899 /locus_tag="Dhaf_2620" /db_xref="GeneID:7259622" CDS 2817862..2818899 /locus_tag="Dhaf_2620" /inference="protein motif:TFAM:TIGR02486" /note="TIGRFAM: reductive dehalogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_2103 hypothetical protein" /codon_start=1 /transl_table=11 /product="reductive dehalogenase" /protein_id="YP_002459082.1" /db_xref="GI:219668647" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR012832" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259622" /translation="MEASFDIALASAYVNAHMYSQGLHVSRVAAKDSDFQGVSEKRYE IKDPKEMSRLIKKIGALFGSPLVRIVKLNPEWSYEHAPGDGRGYKYGEPVDIPEHWQY GIIMGIPLSWETREGAPSFFHTFEGYGNASMHCARMAEFVKKLGYPARENSPHARYEY IMPPHMVAAGIGEQGRLGVVVTPEFGPNFRPSMVVTNMPLEPDKPIDVGIRKFCMNCK ICADQCPSGSISFDGPKEINGRGYDGWQINASTCHNFWMSVPNGGCRVCLAVCPFSKE SNWLHTTARDIAVRERTGITASTLTWMEKAFYGVNTPEHYHYKEGTRQFDYLVGEKPW FFESKDFLKEN" gene 2818917..2819216 /locus_tag="Dhaf_2621" /db_xref="GeneID:7259623" CDS 2818917..2819216 /locus_tag="Dhaf_2621" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: deb:DehaBAV1_0989 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459083.1" /db_xref="GI:219668648" /db_xref="GeneID:7259623" /translation="MFEFIINGLVLVSLLTVIYALFNYLKEKGEKFAWWKWTLSIFWS IAFLLVFGFIGTTIGEGEPGATLRGGAALLALLVISGVVLYRLFFSGAKNKVSVE" gene 2819285..2820250 /locus_tag="Dhaf_2622" /db_xref="GeneID:7259624" CDS 2819285..2820250 /locus_tag="Dhaf_2622" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: det:DET0237 transcriptional regulator, putative" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002459084.1" /db_xref="GI:219668649" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7259624" /translation="MRKKWIITGMAVLLLLGGYIYGISQQKMDEEIRVGLYKQLLPEA AKFEPLTDRTAQAFDGAGELVAYIGLSSHTGYGGPMLVGTIVDSSGKLREPVILENNE TPSFLMRLAASGYYYKQYNDLPVNSVLMLKQDLDAVSGATLSSRAVSDSVRETAHSIA REVFHLNPEQPVIEWEFGTKEIVTILLFAMSFVIYKVKKLQRYRLLFLGVSTLILGFW LNRTLSVVQFSSLFLGYLPSPKINLLFYIVLAGVVIPILFTGKNLYCTYVCPFCGLQE AAHRISGKNIPLGKSAHLAGQITQSVIICGSVGSGDNHQGQCDNL" sig_peptide 2819285..2819353 /locus_tag="Dhaf_2622" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.937) with cleavage site probability 0.735 at residue 23" gene 2820372..2820485 /locus_tag="Dhaf_2623" /db_xref="GeneID:7259625" CDS 2820372..2820485 /locus_tag="Dhaf_2623" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459085.1" /db_xref="GI:219668650" /db_xref="GeneID:7259625" /translation="MGAFLDILRDLVIAVQKKCYKIKEDVFGKSMTKNVEN" gene 2820542..2820634 /locus_tag="Dhaf_2624" /db_xref="GeneID:7259626" CDS 2820542..2820634 /locus_tag="Dhaf_2624" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459086.1" /db_xref="GI:219668651" /db_xref="GeneID:7259626" /translation="MCSDTAHRGDGQRMKVIRVERAGKKVVCEA" gene 2820993..2822546 /locus_tag="Dhaf_R0061" /db_xref="GeneID:7259627" rRNA 2820993..2822546 /locus_tag="Dhaf_R0061" /product="16S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7259627" gene 2822787..2822863 /locus_tag="Dhaf_R0062" /note="tRNA-Ile2" /db_xref="GeneID:7259628" tRNA 2822787..2822863 /locus_tag="Dhaf_R0062" /product="tRNA-Ile" /db_xref="GeneID:7259628" gene 2822970..2823045 /locus_tag="Dhaf_R0063" /note="tRNA-Ala5" /db_xref="GeneID:7259629" tRNA 2822970..2823045 /locus_tag="Dhaf_R0063" /product="tRNA-Ala" /db_xref="GeneID:7259629" gene 2823149..2826060 /locus_tag="Dhaf_R0064" /db_xref="GeneID:7259630" rRNA 2823149..2826060 /locus_tag="Dhaf_R0064" /product="23S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7259630" gene 2826202..2826317 /locus_tag="Dhaf_R0065" /db_xref="GeneID:7259631" rRNA 2826202..2826317 /locus_tag="Dhaf_R0065" /product="5S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7259631" gene complement(2826527..2827372) /locus_tag="Dhaf_2625" /db_xref="GeneID:7259632" CDS complement(2826527..2827372) /locus_tag="Dhaf_2625" /EC_number="4.1.2.13" /inference="protein motif:TFAM:TIGR00167" /note="KEGG: chy:CHY_0128 putative aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II" /codon_start=1 /transl_table=11 /product="ketose-bisphosphate aldolase" /protein_id="YP_002459087.1" /db_xref="GI:219668652" /db_xref="InterPro:IPR000771" /db_xref="GeneID:7259632" /translation="MLEPSIQLLNKARQGHYAVPAFNFHNLEIMQAIIKTAEKQQSPV ILQITPTYLEKIGDIAATAMARAAAKEAKVPVALHLDHSNSLSWIKWALAHGFTSVMI DASTLPLNENIAYARQTVEWAHAHGAAVEAELGHIGGIEDGQETGTNPNMGLADPVEA VKLVTESGIDAFAPAVGTAHGLYKLPPNINFSLIDTLSSLVNVPLVLHGGSGIPDDMI RKAIEKGIAKVNIGTELKVTWAKAMTEALITEQEPWKTALKVHEEVGQVVAHKISLCG SNGKA" gene 2827520..2828290 /locus_tag="Dhaf_2626" /db_xref="GeneID:7259633" CDS 2827520..2828290 /locus_tag="Dhaf_2626" /inference="protein motif:PFAM:PF07702" /note="PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: btk:BT9727_3794 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002459088.1" /db_xref="GI:219668653" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:7259633" /translation="MELKKTESIPLHHQLTTTLRNALRDGVWNLGDAFPTDKDLMLQY GVSSTTVRRSVGQLVQEGLLDRKAGKGTFVKNKPVEETLGLLTGFFEEMASRGLSPSA ELIDLRPIDVTAKELERVPELKIFNEQKLFLIEKVQKLNNEPIVYLQSYWPYEYGSRM AAFDLTEIGLYAIAAKELGLVLTNAEQTIGAGIAHKKVAQHLGVRTGFPILTMNRIGY CGEQPVELSLNSYRADRYKYKISLQQNTGRNIEGLFLS" gene 2828725..2830029 /locus_tag="Dhaf_2627" /db_xref="GeneID:7259634" CDS 2828725..2830029 /locus_tag="Dhaf_2627" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1009 putative sugar transport sugar binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_002459089.1" /db_xref="GI:219668654" /db_xref="InterPro:IPR006059" /db_xref="GeneID:7259634" /translation="MFFKKVISLTMICALLILGTAACGKSDTSTVDQSDAKGQEQITI TFVNWASAEEATKQLTLDMISEFEKQNPTIKVKNVPMPFSDVLNQLTIMNNAGNAPDI AQITNGDGMSLAYMGALEPTDNLLSEGFKADLNKTVYDLGLKDNQHYTIPWAGQPMGF WYNKKLMQDAGLDPNNPPQTLDELNKAMDIAKQKLPNSVVMLQIDTTIRTMGLEQEWP LMNAFGAISENRIQPSQMEPYAEWLRDLLKKGYTLPGKKLGEFRALAAQNNLLFGIDQ PCFKGIVQTYDKSNKMSDEEFNEMWAVTTMPVGADNLSYSVPGDHNLVILKSSEHKEA AAKFAEFLAGDDYSLKNYVIPFGYVPVVQSAGERFPDSFKDPSLKAFSEKILQTEVRP PWGPDYSKYATDVMTSMQEIITTSKPVPDILNSLQTKLQNYK" sig_peptide 2828725..2828799 /locus_tag="Dhaf_2627" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.865 at residue 25" gene 2830215..2831552 /locus_tag="Dhaf_2628" /db_xref="GeneID:7259635" CDS 2830215..2831552 /locus_tag="Dhaf_2628" /inference="protein motif:PFAM:PF07882" /note="PFAM: L-fucose isomerase _2 domain protein; L-fucose isomerase-like-like; KEGG: rxy:Rxyl_2587 L-fucose isomerase and related proteins-like protein" /codon_start=1 /transl_table=11 /product="L-fucose isomerase _2 domain protein" /protein_id="YP_002459090.1" /db_xref="GI:219668655" /db_xref="InterPro:IPR012889" /db_xref="InterPro:IPR015888" /db_xref="GeneID:7259635" /translation="MIKSSSKIGLAFFVRPQFDVDLAKNFFNKVQDSLKEAGIATQVF ELPVSTDAEALSLAESVNSHQDLHGLIVVQGTFCDASLILNLASNINLPIMIWATKEQ PTGGRLSLNSFCGLNLGAHTLVNAGIKFKGVYGSPGSPAVIKKVTSFARAAGAVKWLK GKRIGLFGHRPSGYYPSNFNEILLRKQFGITVEYLSLSEVFSLAQKMEIKDIQPFINT LVGVEGLEMVSTSKSVQAYLALKELIAQKALDAVAVECWPEFMAGFGGAVCYALSRLN DEGIVAACEADVNGAVTMLLGSYLSSQANFIADLVGAEEEQNQLIFWHCGNGPLSLAA PGTNPVAGVHPNRKTPLAMYFPLKGGPVTVSRLSSDHNGNLRLFLGSGTGIETDLLYS GNSLPIQISGSVEETLDTILCEGIEHHYIVTYGDLTGEFREIAELLGLRMITF" gene 2831564..2832664 /locus_tag="Dhaf_2629" /db_xref="GeneID:7259636" CDS 2831564..2832664 /locus_tag="Dhaf_2629" /inference="similar to AA sequence:KEGG:Tlet_1453" /note="KEGG: tle:Tlet_1453 peptidase M24" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_002459091.1" /db_xref="GI:219668656" /db_xref="GeneID:7259636" /translation="MSKKQEEIAIKEQRLLSMMEENELEGICLSRAANFAWLTAGSNN RVVWGQETGAAALVIVEGRKFLVAPQNEIERLMLEQVADLGFEPWTYEWYEDRQQAIA RLVGNKKIGSDIPLGNWPVIEAELKRLRFSLTDHEVERAEKLAAICSDDLAAVCQAIV PGWSEWNIQVELSNRLLKQGVRASVLLVGADDRTRFKHPLPTLNPVCNYVIIGLVGEQ CGLHMALTRSIYFGRVPEALRQNYNCCLAVERTYWENSVVDADSQKVFQQGINAYADL GHPEEWKRHHQGGAIGYAPREFRAGEGRREVMQDRQMLAWNPTVENTKCEDTCLVTPT GLKSMTTVPSWWPTTTVKAGNINFLRPLILEK" gene 2832817..2833935 /locus_tag="Dhaf_2630" /db_xref="GeneID:7259637" CDS 2832817..2833935 /locus_tag="Dhaf_2630" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tth:TTC0211 sugar-binding transport ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459092.1" /db_xref="GI:219668657" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259637" /translation="MAGIKLQGVSKVYGTTTAVAPTDLIIEDGEFLVLVGPSGCGKTT TLRMICGLEAPSEGNIFIGERNVTKLEPKDRDIAMVFQSYALYPHKNVYDNMAFGLRI RKRSKQEIDAAVKETAEMLGISQYLNRYPKELSGGQRQRVALGRAIVRHPQAFLMDEP LSNLDAKLRVQTRAELIKLHQKLKITVIYVTHDQIEAMTMGSRLVVMKDGLVQQVGSP KDIYGYPANKFVAGFVGSPPMNFIKGVVEVNDMVCFKAPELTIHLPLQGGLQSLGKFE AFLGVRPEGFVWVDSTETRNCLACRVEVVEHVGAEIIIHARFGTDEEIVIKQNGYEVE PEIGSLIKVRPHQGNIHLFDAHTQQRVMTATVVDGKIL" gene 2833979..2834896 /locus_tag="Dhaf_2631" /db_xref="GeneID:7259638" CDS 2833979..2834896 /locus_tag="Dhaf_2631" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_838 putative ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459093.1" /db_xref="GI:219668658" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259638" /translation="MANRLESQDNPRGIGKVQIPLHVKLIFPSVFVLGLVILYPLISS LVLSLFNYELTRPDEIKLNVLGNYGKMINDDVFWLSLKNTVVFTGVSLVISIIVGLIG AITLDQLPKRLAGLRGVILIPWLIPGVIVGFLFMLIFDVQVGVANVILERAGIIKEFL PWLMNDQLAGIAVIVANIWNQVPFYILMFTAGLKAIPAEIKEAAIVEGASRWQEFIHV TLPFLRGILIITSLLMIIRNFNNFPLIYTMTGGGPVYSTTTFVIYIYRLAFEQFNIGY ASAVGVVWCLVLLLLSSLYIKVLSKQDSI" gene 2834937..2835782 /locus_tag="Dhaf_2632" /db_xref="GeneID:7259639" CDS 2834937..2835782 /locus_tag="Dhaf_2632" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL3860 putative transmembrane component of ABC transporter" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459094.1" /db_xref="GI:219668659" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259639" /translation="MFRRRLSLGWATFVWGSVAFIMAWTLFPIFWMVSTSFKTNLDVF KMPPELWPSQPTLENYIGLASGINPIPRFFFNSFITALLTVVLTTVLAVFAGYALSRL KFKFRDQILVSVLVTQMFPLVVMLAPLYLLYVKAHLLNTYLGMVIAFTSFALPFGIWM IKGFIDSVPVEVEQAAMVDGCSRMQALRTVVLPLITPGIVATGIFAFLDAWNNLLFPL TLTNEIAMKTLPAGMVMAFSGQFKSDWSGMMAASFITTLPVLIIFIFLQRYLVEGLTG GAVKG" sig_peptide 2834937..2835008 /locus_tag="Dhaf_2632" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.940) with cleavage site probability 0.714 at residue 24" gene 2835857..2837065 /locus_tag="Dhaf_2633" /db_xref="GeneID:7259640" CDS 2835857..2837065 /locus_tag="Dhaf_2633" /inference="protein motif:PFAM:PF00365" /note="catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="YP_002459095.1" /db_xref="GI:219668660" /db_xref="InterPro:IPR000023" /db_xref="GeneID:7259640" /translation="MKANIAIVQAGGPTSVLNASLAGFLEAAASSERYHHVLGFCNGI EGLIKNQVMHLEGLSKAQLDALKSQPGAVLGAGRYPLTPERLSKVCCNLQLREISQLV LVGGNGTMWAADQIAEACPDVQVVGIPKTVDNDLWGTDHSPGYLSAAKFIGEAVRSLA LDLWAMRNFERVRVVEVMGRNVGWLAAAGSLAQTSLPDYPPLHFYLPEHPFELEKFFT KVDEHLHRHPCLLVIVSEGIRLADGSPVAEFEIGRCKVPGGAAQMLSSELRNRGIPSR SEVLGILQRANTWSVCERDRQEAIFLGKQAIGVLGQGKSKVMLGLPAQTVDFAEDSKA QWVDLKSVAGLERPVAPCYLTESGIDPSFTAWLQNKMGEPLAEANSALQVWKLAAEQL SSNPVNRQSR" gene 2837101..2838540 /locus_tag="Dhaf_2634" /db_xref="GeneID:7259641" CDS 2837101..2838540 /locus_tag="Dhaf_2634" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde Dehydrogenase; KEGG: art:Arth_1944 succinate semialdehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="Aldehyde Dehydrogenase" /protein_id="YP_002459096.1" /db_xref="GI:219668661" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7259641" /translation="MKKEIRESLFIDGEWQEAINKEVKGVINPATGKVFCEIGYGEVD DALSAVDAADRAFGAWSKTSVRERADILNRTADLLRQRADHIGLILAAESGKPVPQAV GEVKFSAEYFQWFAEEIRRPYGQSIPSDAANKRHHVYTQPAGVALCLSPWNFPVSIQA RKLAPALAAGCTVVARGSEVAPLSLIELFKCLQDAGIPKGVANSIQGPAAVTTAAMMK HPAVRVVSFTGSTPVGRSLMRQAADGVIRLALELGGNAPFIVFADADIEKAVEGAMIA KFRNNGQSCIGANRFYVHERIYDKFTALFAEKILRMKIGNPTEEVDLDLGPMVNLKDK ARIESLIREAEALGAKPLVPKAEVPAEGYYVPPVILENVPESAALAREELFAPVAPLF KFADENEVIEKANSSDMGLAAYVYTNDLSRSIRVTESLKFGIIGLNNALPSVAYAPMG GVKQSGIGREGARIGLEEFMDVKYVATEI" gene 2838588..2839517 /locus_tag="Dhaf_2635" /db_xref="GeneID:7259642" CDS 2838588..2839517 /locus_tag="Dhaf_2635" /inference="protein motif:PFAM:PF00121" /note="PFAM: triosephosphate isomerase; KEGG: emi:Emin_0151 triose-phosphate isomerase" /codon_start=1 /transl_table=11 /product="triosephosphate isomerase" /protein_id="YP_002459097.1" /db_xref="GI:219668662" /db_xref="InterPro:IPR000652" /db_xref="GeneID:7259642" /translation="MKQIFINLKRFDVHRSLGGVCPFERGDEWVEWIVDECINYEIGK LEGVRVSFMLPESLLVSAVKRLQIYPEAERKSLAVGCQGVFREDVVVGGNFGAFSTNR PAAAAKSLNCSWTMIGHSEERNDKMGIIAAYDPGSLHSNMGRQAVNTTVDTILNQELK CALNRGLNVLFCIGETAEDRGDGDFNQQKPPIKAALKAQLLNGLKGFDKNQLKGRLVI GYEPVWAIGPGKTPPGSDYIAFVSTYIKETVLREFNFVPSVVYGGGLKEENAGIIAKI DTIDGGLVALTRFTGEIGFYPEDLRKIISKYLE" gene 2839557..2841008 /locus_tag="Dhaf_2636" /db_xref="GeneID:7259643" CDS 2839557..2841008 /locus_tag="Dhaf_2636" /inference="protein motif:COG:COG3875" /note="KEGG: ank:AnaeK_1225 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459098.1" /db_xref="GI:219668663" /db_xref="GeneID:7259643" /translation="MEIAFEYGQGLMAANLPDHTDVFIPGETVPDPQYLKNTEEETRK SILNPIGVPPISKQVQKGSKVAIVFPDRVKGGVQATSHRKIAIPIIIAELLQAGVEKQ DIKLICSNGLHRKNTREEIKSLLGERVFHEFWWSNQIVNHDSEDWSKLVDLGHDEMGN PVIMNREVFESDLAVLIGHVLGNPYGGYSGGYKHCATGITHWKSIASHHVPHVMHRPD FTTVNSQSLMRRKFDSIGRYMEKCMGKKFFTCDAVLDTEQRQIAVFAGSAAEIQPLSW EIADKRTYVPWAEKNYDVLVFGMPQAFHYGNGMGTNPILMMQAISAQIIRHKRVLKDN CVVICSSLCNGYFHDEEFPSYRALYDLFQKDYHHTLPDLEKYGEYFANNQEFIDKYRF NYGYHPYHAFSMISCGQIAEQHCSAIYIIGAYEPGYARSMGMKTRATFEEALKDAGKY VGSNPNILALPKAFKLASVHLGMKESMNKIISK" gene 2841026..2842036 /locus_tag="Dhaf_2637" /db_xref="GeneID:7259644" CDS 2841026..2842036 /locus_tag="Dhaf_2637" /EC_number="1.2.1.12" /inference="protein motif:TFAM:TIGR01534" /note="KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase, type I" /protein_id="YP_002459099.1" /db_xref="GI:219668664" /db_xref="InterPro:IPR000173" /db_xref="InterPro:IPR006424" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7259644" /translation="MSVRVAINGFGRIGRLTLRAILKQSLPVEVVAINDLGSPDLLAH LFKYDSLHGILPNSVEIDGDTMLVDGKSIAILSERNPLDLPWRKLGVDIVIESTGRFT KRAAASQHLTAGAKKVVISAPAKNEDITIVMGVNDDQYQPQEHHIISNASCTTNCLAP VAKVLLDAFGIEQGMMTTTHSVTNDQRILDLEHSDWRRSRAAYQSMIPTTTGAAKAVT LVIPELAGKMNGLAVRVPTPNVSLVDFVANLTKSTSKEGVNAALREAAEGKLKGYLEY TELPLVSRDFNGNSASSIVDGLSTMIIGERMVKVLAWYDNEWGYSNRIVDLVKLIVMK GL" gene complement(2842090..2842938) /locus_tag="Dhaf_2638" /db_xref="GeneID:7259645" CDS complement(2842090..2842938) /locus_tag="Dhaf_2638" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: efa:EF0432 AraC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002459100.1" /db_xref="GI:219668665" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR003313" /db_xref="GeneID:7259645" /translation="MRVNEKGVLEGSEYYFFTPSNLAKSLFFYLICTGKFFCDQNYNV EREKYSSYLLMFVVKGQGTVCYNDRIYTAKENDLIILNCHNPHRYYTNTEWTTLWLHY DGNISKELFDLIYDRFGCVISLSNLLIIPKYLNRILEDARAGSPLSEPLMSCYIQRML SELLMLSDDFILPESDKSDPVLEAIAFIETNFKEKLSLKVIASHVNMSSFHFARTFKK DTGYSPYEYVVKTRLNHAKMLLKKTNLQIKEIAAECGFSTESNFVVNFHNNIGVTPGE FRNTPF" gene 2843162..2843977 /locus_tag="Dhaf_2639" /db_xref="GeneID:7259646" CDS 2843162..2843977 /locus_tag="Dhaf_2639" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002459101.1" /db_xref="GI:219668666" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7259646" /translation="MLIVGELINSSRKAISDSVDNRNAHYIKKIAFEQVEAGANYLDV NCGTKVFEEKETMEWLINTIQEAVQVPLCIDSPNPEVLEAGLALCKYGQPMINSITDE KERFEAISPLLAKYKAKIVALCMDDEGVPETAADRMRVLKSLYDKLRSIGVPDQDMYF DPLVKPISSIEAAGIEVLETIRAVKKEYPNVHFMCGLSNVSYGLPNRKILNRIFMVQT MTLGMDGYILNPTDRGMMGTIFAAQALMGQDLYCMNYLSAHRAGVYEELSKNL" gene 2844029..2845159 /locus_tag="Dhaf_2640" /db_xref="GeneID:7259647" CDS 2844029..2845159 /locus_tag="Dhaf_2640" /inference="protein motif:COG:COG0407" /note="KEGG: ote:Oter_2886 uroporphyrinogen-III decarboxylase-like protein" /codon_start=1 /transl_table=11 /product="Uroporphyrinogen-III decarboxylase-like protein" /protein_id="YP_002459102.1" /db_xref="GI:219668667" /db_xref="GeneID:7259647" /translation="MNHRERVLAVLNKKLPDRIPMDLCESASFINDPAYFALKNYFNI EGEVEPFRRNFTANYYDPRVLQALDIDFRHVWLKTPTGYQNTMYDDGTFSDEWGVVYR LLGNERAIVKYPLLNADESDLDNYPWLDPYAPGRAEGLAKRAHDLLQNTDYAIAAHAA HNYGFFDTAWIMRGFDNFLVDLMINKPFAKRLLGKILDIFLGLHEVYLNAVGPYIHMI AFCEDYGMQNAPFISPELYKEMLQPYHKELFAFIKKKAPQAKIMFHSCGAVYPLIPLL IEAGIDVLNPIQHTANGMDPLKIKQEFGSEVIFHGGIDVQHALAGSIEGAEKEVKNMI DTLGENGGYIVAPANVVSGETPPENIASLYRTAANYGRYDLK" gene 2845209..2845841 /locus_tag="Dhaf_2641" /db_xref="GeneID:7259648" CDS 2845209..2845841 /locus_tag="Dhaf_2641" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_2116 corrinoid methyltransferase" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002459103.1" /db_xref="GI:219668668" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7259648" /translation="MKILDEIKEALMKGDANQVREQAAKAVAEGLDPVTIINDGFITA MSIIGTKFKNNEVYVPEVLVAARAMHAGMDAVKPFLAGDALQEKGTVLIGTVKGDLHD IGKNLVIIMLQGGGFKVVDLGIDVSAEKFVEAVKENKPDVVAISALLTSTIINMKGVI EGLADYRDQVKIIVGGAPVTQDFADKIGADAYAPDAASAVEKVRELVGAA" gene 2846026..2846457 /locus_tag="Dhaf_2642" /db_xref="GeneID:7259649" CDS 2846026..2846457 /locus_tag="Dhaf_2642" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: gtn:GTNG_1259 transcriptional regulator MarR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002459104.1" /db_xref="GI:219668669" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7259649" /translation="MSEMIAKEYIELISNLFGNFSQLNKEAVALSHLQSHVLEFIYMK QRALNIKDISSGLDIAKQQLTKVISDLETGGFLVKAPDPKDKRAVLVSLTTAGKDAED QKWAGMYQRLSNNLTKLTDEEQADLTYALHKVNLLLKKMEN" gene 2846675..2847340 /locus_tag="Dhaf_2643" /db_xref="GeneID:7259650" CDS 2846675..2847340 /locus_tag="Dhaf_2643" /inference="protein motif:PFAM:PF02308" /note="PFAM: MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter" /codon_start=1 /transl_table=11 /product="MgtC/SapB transporter" /protein_id="YP_002459105.1" /db_xref="GI:219668670" /db_xref="InterPro:IPR003416" /db_xref="GeneID:7259650" /translation="MLISDYEMALRLLLACILGGVVGWEREKIHKPAGLRTHILVALG AALVTIVSMFAFTSFDYANKDPGRIAANIVTGIGFLGAGTIMREGTSVKGLTTAASIW VVAAIGMAVATGMYYSSLITTFLVFLTLDGFFEKLLFRNQQLLKVCIANEFKLTEIGE VFEKNGITIKHVSVLPIKFSRNIPVEFRIRVPKDIDYFKILGEIVAIDGVTMEESMPL YRR" gene 2847407..2847826 /locus_tag="Dhaf_2644" /db_xref="GeneID:7259651" CDS 2847407..2847826 /locus_tag="Dhaf_2644" /inference="similar to AA sequence:KEGG:CHU_2313" /note="KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase" /codon_start=1 /transl_table=11 /product="rifampin ADP-ribosylating transferase" /protein_id="YP_002459106.1" /db_xref="GI:219668671" /db_xref="GeneID:7259651" /translation="MHKKRELIETGPFYHGTKADLKIGDLLEPGYSSNYGKRKKANYV YLTGTLDAAVWGAELAVGDGPGRIYCVEPTGTFENDPNLTDKKFPGNPTRSYRTQHPL RVIGEVPEWEGHSPETLQKMRDHLDELKRLGIEAIND" gene 2848187..2848594 /locus_tag="Dhaf_2645" /db_xref="GeneID:7259652" CDS 2848187..2848594 /locus_tag="Dhaf_2645" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459107.1" /db_xref="GI:219668672" /db_xref="GeneID:7259652" /translation="MPEKTFQEEGQAELPLLKDKKLIKEEVNRRLVHGIKQGHLEYDA LYNHEKSSLNKDAEILSMLFQRLFFYRLNEKLAAFHCDHTYRFSRQILTQMQLNRGKI NDILEIFQKNGGVCDCEVLYNVESRLIGKDSQV" gene complement(2848591..2849553) /locus_tag="Dhaf_2646" /db_xref="GeneID:7259653" CDS complement(2848591..2849553) /locus_tag="Dhaf_2646" /EC_number="1.8.4.11" /inference="protein motif:TFAM:TIGR00357" /note="TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: bcy:Bcer98_3954 bifunctional methionine sulfoxide reductase A/B protein" /codon_start=1 /transl_table=11 /product="methionine-R-sulfoxide reductase" /protein_id="YP_002459108.1" /db_xref="GI:219668673" /db_xref="InterPro:IPR002569" /db_xref="InterPro:IPR002579" /db_xref="GeneID:7259653" /translation="MTVDKTNLEIATFAGGCFWCMESVYSPLPGVLEVLSGYTGGHVE NPTYNEVCSHTTGHREAIQIKFNPNIVSYKELLAFFWRQIDPTDPGGQFHDRGESYQT AIFYHSEEQRRLAEESKQALISSSHFDKPIVTEILPAAPFYPAEDYHQGYHQKNAFRY ALYRQGSGRDAFINKHWAKEKEQLKKRLTPLQFHVTQEKGTEPPFQNEFWNNKQEGIY VDVVSGEPLFSSKDKFDSGCGWPSFTRPVLKSNIVEKIDLSHNMTRTEVVSRNSESHL GHVFDDGPGPDGLRYCINSAALRFIPKEDLEREGYGDLLRLFRD" gene 2849873..2850631 /gene="fabG" /locus_tag="Dhaf_2647" /db_xref="GeneID:7259654" CDS 2849873..2850631 /gene="fabG" /locus_tag="Dhaf_2647" /inference="protein motif:PFAM:PF00106" /note="Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis" /codon_start=1 /transl_table=11 /product="3-ketoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_002459109.1" /db_xref="GI:219668674" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR002424" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7259654" /translation="MRLMNKVAIVTGAASGMGKSIALLYAKEGAKVVVSDLNLEGAHK VAEEITSAGGTALAIKTNVAVEEDIQALVDTAVSTYGTVDIFVNNAGIMDNFEPAADI EDKNWERIFAVNTTSVMRATRKVLPIFLEKSSGVIVNVASAGGLNGARAGATYTASKH AVIGFTKNTGFMYAQQGIRCNAIAPGAVETNIGSTITDPHKFGSARAYAGMATNPRMG KPEEIAQVALFLAAEESSFVNGAVIVADGGWSAY" sig_peptide 2849873..2849941 /gene="fabG" /locus_tag="Dhaf_2647" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.918) with cleavage site probability 0.791 at residue 23" gene 2850954..2853197 /locus_tag="Dhaf_2648" /db_xref="GeneID:7259655" CDS 2850954..2853197 /locus_tag="Dhaf_2648" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dol:Dole_1621 nitrate reductase" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002459110.1" /db_xref="GI:219668675" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7259655" /translation="MGEWKKSGCILCAQNCGLELEIENNRIVKVRGDKDNPRSLGYCC QKGLKIAHYAHNGDRLYYPLKKAGDRHVRISWEQAIGEISEKLLSIKEDHGPKSFAYV GGGNVGGQMEVGIGLRLLGLLGSRYYYSSLAQEFSNVFWVDGRVAGKQGLTSVADAHG ADTLVAWGWNGWMSHQEPRTRLLIKEFAENPRKKLLVIDPRLSETAKFADLHLALRPG SDTLLLKAIIRIILEQEWEDKKYLEDHVSGWEEVAQLFSGFEAKRAVEEVCGLNYEDV VETARLIAQTKSCIHQDLGIYMNRNSTLNNYLLHILRAVTGRLAVEGGQIFPAFLYPM GSDSDERHPKTWRTVKHKMFPVLGVFPPAILPDEILHDHPERIRALIVSACNPLRSWP DTLAYEKAFHALELSVCIDIAYTETARLSDYVLPSLSYLESYDTTCFNYSYPEFYFQM RQPVLEPLSPEAKEGSAIILELIKAMGFLPELPDRLYGAGQQGLTSYLGAINAYFLEN PQHAKLAPLILAETLGKALGSVNQALIVGLLINSSKGFKAGAAAIGYPPDITMAEKMY QDIVGHPQGLILARFQGDNFQMLHTPDKKLALSIEELFEPLQAATIDKERAELDLPEH YPLILHAGLHHETVANTMLRNPQWNGSRRWATMLMHEADAGNLGLTDGDKAEITTKAS TALIEVEISPHAARGCVYIRHGGGLVYEGSKYGVNVNELVQSTDRDEMCTPMHRRIPC RVEAVGE" gene 2853204..2853659 /locus_tag="Dhaf_2649" /db_xref="GeneID:7259656" CDS 2853204..2853659 /locus_tag="Dhaf_2649" /inference="protein motif:PFAM:PF02082" /note="PFAM: protein of unknown function UPF0074; KEGG: gka:GK0356 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, BadM/Rrf2 family" /protein_id="YP_002459111.1" /db_xref="GI:219668676" /db_xref="InterPro:IPR000944" /db_xref="GeneID:7259656" /translation="MQLSSRFPVAVQILIIIAWCPEDVKVTSEALAVSVNTNPVLIRR IMGYLKKAGLIAISSGTGGAKLTRSTEEITLLAVYRAVELTDQHALFGLHAHPNAYCP IGCRINDVLRPPLEEARNALEGSLAKVTIQELLSSFPPFDYAILKHLKL" gene 2853970..2854422 /locus_tag="Dhaf_2650" /db_xref="GeneID:7259657" CDS 2853970..2854422 /locus_tag="Dhaf_2650" /inference="protein motif:PFAM:PF01047" /note="PFAM: regulatory protein MarR; KEGG: mta:Moth_2079 MarR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_002459112.1" /db_xref="GI:219668677" /db_xref="InterPro:IPR000835" /db_xref="GeneID:7259657" /translation="MNYNKTKQIHKLMFTFMGLFHEKFLLPFRNEVDCRSDLKKNHIK ILNILYHENPKTLTEIGKNLDIEKGSLTALVDFLEEKELIIRAMDPKDRRKSLIYLSP QGKEKMEERIAAFTEQMGESLAVFDAGDIQAFENNLQHVVDFLKKVPV" gene 2854529..2855878 /locus_tag="Dhaf_2651" /db_xref="GeneID:7259658" CDS 2854529..2855878 /locus_tag="Dhaf_2651" /inference="protein motif:TFAM:TIGR00797" /note="TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: swo:Swol_0313 hypothetical protein" /codon_start=1 /transl_table=11 /product="MATE efflux family protein" /protein_id="YP_002459113.1" /db_xref="GI:219668678" /db_xref="InterPro:IPR002528" /db_xref="GeneID:7259658" /translation="MISLRNDSIGKLLWEFSLPAIIGMLVNALYNIIGRIFVGQGVGY LAIAAVTVAMPVMILLMSVAMLVGVGATALISIRMGEKKMDEVEKIAGNATGLLVLLP LLLSFVYFFNAEPLLVLFGASPEVLPYAKEYSHIIMMGAVPGALAFGMNNFIRAEGNP RIAMLTQIIGAVINIVCNYIYIFIFDWGIQGSALATVTGQTVSAIWVLSHFLMGRSRI KLRAKYLRLDPSIVLKTITIGFAPFAMQIANSVQQTLLNNTLREYGGDIAISAVGIVM SISMLLLMPIVGVSQGAQPIIGYNYGAQNYERVKETLKKAVLVGTAMAAGGFVLLHLF AVPVVGLFSKNDLALTELAVHASLVFLALMPIVGFQIIGSSYFQAVGKPIQSTILSLS RQVLLFIPLLLLLPRFYKIEGVWITAPIADGLAVLVTGTFLFFELRKYKKPVPALGD" gene 2856065..2856826 /locus_tag="Dhaf_2652" /db_xref="GeneID:7259659" CDS 2856065..2856826 /locus_tag="Dhaf_2652" /inference="protein motif:PFAM:PF01936" /note="PFAM: protein of unknown function DUF88; KEGG: amt:Amet_1991 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF88" /protein_id="YP_002459114.1" /db_xref="GI:219668679" /db_xref="InterPro:IPR002790" /db_xref="GeneID:7259659" /translation="MDNDKNIAVLIDADNVSEKYIKPILDEVSNHGIPTYKRIYGDWT KPQLSSWKNVLLNYSITPIQQYSYTTGKNATDAALIIDAMDILYSKNVDGFCIVSSDS DFTRLAARLREAGMYVIGMGEKKTPTPFIAACEKFKYLEVLAGGTTNVSEQGIPLKSE KHDPTKDGMASLDDLIRTIRIIVTESSDEDGWAFLGEVGKRLNKRYPDFDTRNYGHTK LTPLISSLKQFEIQPRKTSNPNIIHYFIKNKPKVK" gene 2856911..2857765 /locus_tag="Dhaf_2653" /db_xref="GeneID:7259660" CDS 2856911..2857765 /locus_tag="Dhaf_2653" /inference="protein motif:PFAM:PF08543" /note="PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pdi:BDI_1722 pyridoxal kinase, putative" /codon_start=1 /transl_table=11 /product="Phosphomethylpyrimidine kinase type-1" /protein_id="YP_002459115.1" /db_xref="GI:219668680" /db_xref="InterPro:IPR013749" /db_xref="GeneID:7259660" /translation="MERQKRVAAIHDISCVGRCSLTVALPILSAAGFDTGVLPTAVLS THTGGFEGFTYRDLTEDIEPIAKHWQSLDLKFDALYSGFLGSFAQIDLVADLFKTFRK DDTLVMVDPVMADNGVLYSVYSPEMAKGMAKLCSMADIIVPNLTEAAFMLEEDYVGDK YSQDYVEKILRKLSDMGAKKVVLTGISFDPAQLGAACYDRETDQVSYAFNERVEGYFH GTGDVFGSTLLSGLLNNFSLAEATQIAVDYTLKCIQLTVAGNQERRYGVCFERALPYL IQKLGLLK" gene complement(2857895..2858770) /locus_tag="Dhaf_2654" /db_xref="GeneID:7259661" CDS complement(2857895..2858770) /locus_tag="Dhaf_2654" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cno:NT01CX_0172 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459116.1" /db_xref="GI:219668681" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7259661" /translation="MIYEGAVFRPPSEASSLILQVSLGCRHNQCTFCSMYKGKSFRIR SIEEIMDMIDAGSKAYPHMERIFLADGDALAVETDVLSNVLETLYQRFPRLKRVGIYG GPKDILEKSPAELARLKEQGLSIVYLGVESGSGLILNLIRKGVTPEEMINAGQKVVAS GLKLSCTIILGLGGRERSPEHAVETGKVISAINPHYLGALTLMLAPDAPLTQKIKSGE FTPLNKWESLIELELMVQGLNLKDCLFRSNHASNYLPLKAHLPHDKATLLSTLKEVIE ENREEVLRPEYWRGL" gene 2859065..2860285 /locus_tag="Dhaf_2655" /db_xref="GeneID:7259662" CDS 2859065..2860285 /locus_tag="Dhaf_2655" /inference="protein motif:PFAM:PF00375" /note="involved in the import of serine and threonine coupled with the import of sodium" /codon_start=1 /transl_table=11 /product="serine/threonine transporter SstT" /protein_id="YP_002459117.1" /db_xref="GI:219668682" /db_xref="InterPro:IPR001991" /db_xref="InterPro:IPR002114" /db_xref="GeneID:7259662" /translation="MKELLRKWNNISLVKRILMGLIIGIMLALWIPDIAAPVAILGNL FVGALKAVAPVLVLILVMGAIANHKSGQQTNMKSILILYLLGTFLAGVTAVIASFMFP VSIALAAGAEDITAPGGITEVLLSLLMNVVDNPVKALMNANYIGILSWAILLGLALRT AGESTKQLIGDFADAVSKVVKWVINLAPLGILGLVFDSIATSGLEVLLGYGKLLLLLV GCMVFVALIINPLIVYLKIRKNPYPLVFRCLRESGITAFFTRSSAANIPVNLTLCEKL GLDRNTYSISIPLGATINMAGAAVTIAVLTLAAVHTLGITVDIPTAIILSVLSAIAAC GASGVAGGSLLLIPLACSLFGISNDIAMQVVGVGFIIGVVQDSCETALNSSTDVLFTA AAEYGEWRKEGKAF" sig_peptide 2859065..2859172 /locus_tag="Dhaf_2655" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.741) with cleavage site probability 0.703 at residue 36" gene 2860395..2861033 /locus_tag="Dhaf_2656" /db_xref="GeneID:7259663" CDS 2860395..2861033 /locus_tag="Dhaf_2656" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: drm:Dred_2778 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002459118.1" /db_xref="GI:219668683" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7259663" /translation="MVYNKTDRVLEKQELRRKRIIKAAKEILSEEEEIGKVSIKSIAR RAGIATGTFYLYFTDKESLVDMIVKEIYAELLAKIKQERAQYTDTFAKLQASMEVCIR LFLKEKYLAKILLEQFPQIHTALNTKYADIEEDLIRLTKIDLDELMAERLIPRQDTNV TATAFVGTFREVILAWIGKGEPQDIELAYQTLIDYNMRGIGRYKIDEELFNH" gene 2861011..2861775 /locus_tag="Dhaf_2657" /db_xref="GeneID:7259664" CDS 2861011..2861775 /locus_tag="Dhaf_2657" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_2779 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459119.1" /db_xref="GI:219668684" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259664" /translation="MKNYLTIESLNVVYAQNGQLTPALKDVSLTLPQGQIGAIIGPSG CGKSTLLNVVAGLNKNYQGKVLLKGAPPQANNEVALILQEYGLLPWKTVWDNVRLGLQ IKGIAGTQAAQRTEEILKQLGLLHLRKRFPIQLSGGQRQRVAIARSMVLHPELLLMDE PFSSLDALTREEMQDLVLKVWQETGLTILIITHNIEEAVFLGQKIFVMSPCPGIITQE INNPLAGDYEARGKMEFLEVCNALRLSLRGRCQACL" gene 2861766..2862521 /locus_tag="Dhaf_2658" /db_xref="GeneID:7259665" CDS 2861766..2862521 /locus_tag="Dhaf_2658" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_2780 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459120.1" /db_xref="GI:219668685" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259665" /translation="MPLKSLTSKVYTTLITVLLIGLAWQILSMLLETTAFPPPWEALQ SFGELFFSELMPHLQVSLYRVGISLMVAALLGIPLGLFLGKNKRADAWSAPFLYLTFP VPKVVFLPIFLILLGIGDVSKIVMITLIVFYQIVVTTRDAARNVQHEYVLSVESLRAS TLELYRHVYFPACLPSILTSLKLGLGTAMAILFLVETYATQEGIGYFIMNSWSSLAYD KMFAGIIAMGLMGFLIYLLLDTCEKFFCSWVNP" gene 2862644..2863618 /locus_tag="Dhaf_2659" /db_xref="GeneID:7259666" CDS 2862644..2863618 /locus_tag="Dhaf_2659" /inference="protein motif:PFAM:PF09084" /note="PFAM: NLPA lipoprotein; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: drm:Dred_2782 NlpA lipoprotein" /codon_start=1 /transl_table=11 /product="NMT1/THI5 like domain protein" /protein_id="YP_002459121.1" /db_xref="GI:219668686" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR004872" /db_xref="InterPro:IPR015168" /db_xref="GeneID:7259666" /translation="MRRKSFSSLVLSLVLVLALSTGCGQKNTANPGDSQAGDTLTIGS MTIEENLPVLVAQQNGYFAEQNLEVKLLTFQSPVELQSAFQTGQLDGMITDIMIAALL KSSGEDLRVASIALGATPEEGRFAIIASPASTVKSVADLKGKSIGISNNSIIEYVTDK LLLAGGVNPGEVNKTTVAKLPLRVEMLLSNQIDAIVVPDPQISYVVSQGAKIIAEDSQ GENLSQSVTIVGKKTLNEKQDALQRFYQAYTKGVQAINASPDQYKELLVKNVNIPESI AASYQVQHYSEPQLPEEKDVNKVLEWLQEKGLLKNPVDYESFVQSGLY" sig_peptide 2862644..2862724 /locus_tag="Dhaf_2659" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.434 at residue 27" gene 2863757..2864398 /locus_tag="Dhaf_2660" /db_xref="GeneID:7259667" CDS 2863757..2864398 /locus_tag="Dhaf_2660" /EC_number="4.2.1.1" /inference="protein motif:PRIAM:4.2.1.1" /note="PFAM: carbonic anhydrase; KEGG: wsu:WS0293 carbonic anyhydrase" /codon_start=1 /transl_table=11 /product="Carbonate dehydratase" /protein_id="YP_002459122.1" /db_xref="GI:219668687" /db_xref="InterPro:IPR001765" /db_xref="InterPro:IPR015892" /db_xref="GeneID:7259667" /translation="MVTEKLLKGIVNFRNGDFETHRQLFEELKDNQKPHTLFITCSDS RIDPNMITGTLPGELFIVRNVANIVPPCRETSEYVSTTSAIEYAVQMLGVENIIVCGH SNCGGCSASLNAPEKLDQLPHTKKWLELMESVRERVLSEFAEDEPTVREWMMEQINVV EQLRHLMTYPYIYEKVMAKELMLSGWHYMIETGEVFIYDYRAGEFRLANGSRA" gene 2864436..2864699 /locus_tag="Dhaf_2661" /db_xref="GeneID:7259668" CDS 2864436..2864699 /locus_tag="Dhaf_2661" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459123.1" /db_xref="GI:219668688" /db_xref="GeneID:7259668" /translation="MVIGFGFGSPLQSLLMLLLTSLLSYVIFKNLRRRRQENLDPDEE RERLRQYYYEQRQRARDYAREFDLSDEEIERRLDEELDEYRHQ" gene 2865085..2865603 /locus_tag="Dhaf_2662" /db_xref="GeneID:7259669" CDS 2865085..2865603 /locus_tag="Dhaf_2662" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_2302 sigma factor-related protein" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459124.1" /db_xref="GI:219668689" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259669" /translation="MIDEDALLKKIRNGDEASLDKLVVFYYPDILRYCLWHTPNRPTA EDATQDTFLKAIRHLDAYIHRGKFRAYLYKIAANVCIDYSRKKVSEQLLGDWPEYDHQ LERVESDANLVWLLRGLPDEQREVVLLRFAHELKVREIAEVIGVPMRTVQSRLRSALK RLEKDFIGREES" gene 2865600..2866388 /locus_tag="Dhaf_2663" /db_xref="GeneID:7259670" CDS 2865600..2866388 /locus_tag="Dhaf_2663" /inference="similar to AA sequence:KEGG:CKL_2301" /note="KEGG: ckl:CKL_2301 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459125.1" /db_xref="GI:219668690" /db_xref="GeneID:7259670" /translation="MNRKVRSKLQAALKDQPSLQISEEHLNQTMEQARMACQSRRQRE GIRYPAFLLRQVRFVGATVWLLQSFLLLCAFWLFGLADIGAVSNFAPRHMPVLLGCFA ISIAMTGIPFMGRSARYRMLETEMATRISIPRLLLTRIFIIGIGNVLLLTVSFLLANA KAELGTGSIALYLLLPYLIACCGCLFIQSYAHNGQQGFACTAFCFSLTVLLFGLYKTA PVVYEQASAPVWGTLCALCAVLLIIGIHRLLDKAASFDLSLKGI" gene 2866410..2867300 /locus_tag="Dhaf_2664" /db_xref="GeneID:7259671" CDS 2866410..2867300 /locus_tag="Dhaf_2664" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2300 predicted transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459126.1" /db_xref="GI:219668691" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259671" /translation="MELTIQGLTKRYKDKTAVNNINLTLTPGVWGLLGANGAGKTTLM RMVAGILTPTSGKVQYDGIAIKTLGEAYRDVFGYLPQTFGFYPEFTVADYLHYMAALK GLPQKKTNQKIDELLHRLTLADVRNKHIRKLSGGMQRRVGIAQALLNDPDILILDEPT SGLDPGERIRFRNILSEFAQQRIVLISTHIVSDVEYIANRNAIMKDGHIIAAGTTDEL VKTMDGKVWQSTLPAEQLHHYERTVRVVTVRNEESGRVSVRYVSESPGLPDSQTAAPR LEDLYLWLFRGEEAVKEDAV" gene 2867297..2868550 /locus_tag="Dhaf_2665" /db_xref="GeneID:7259672" CDS 2867297..2868550 /locus_tag="Dhaf_2665" /inference="similar to AA sequence:KEGG:CKL_2299" /note="KEGG: ckl:CKL_2299 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459127.1" /db_xref="GI:219668692" /db_xref="GeneID:7259672" /translation="MNRMMALELKRVAKTRSTWILAAGALLLSVVMALLVISFARHWN LDENGREVSLTGRDAIQANQEMLKPIEGELTPEKIRTAFATYHAVYETYGAKIEDIPK DIYYQKIAPINPILNGVREVYVDSSTGIPVPLYEISPEEAANFYEQRTERLSDYLSQE YKDSPDAARQALAINEKVKAPFYYIYGVGDSDTSEYLTMCIFLLVMLCTVIAAPIFSA DYQSGADDILRCTRHGRRRLAVVKLSSAILLTTAIFAVCITAFILISHAAFGWESLKT TLQLAFSAISFVPLTVGEANMLVVFSGLLSFLATVCFTLFLSSLFKNPITVLGLAIGG CLLPTILSFAGSGAAFENWLRLCLPSGGVGLRNSFFFELTDFNFLSLGSFGIWTPYII PVASGIESVLFFSLTIRSYSRHEGC" sig_peptide 2867297..2867398 /locus_tag="Dhaf_2665" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.402 at residue 34" gene complement(2868661..2869833) /locus_tag="Dhaf_2666" /db_xref="GeneID:7259673" CDS complement(2868661..2869833) /locus_tag="Dhaf_2666" /inference="protein motif:TFAM:TIGR00261" /note="TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: oih:OB3439 pheromone shutdown protein" /codon_start=1 /transl_table=11 /product="TraB family protein" /protein_id="YP_002459128.1" /db_xref="GI:219668693" /db_xref="InterPro:IPR002816" /db_xref="InterPro:IPR005230" /db_xref="GeneID:7259673" /translation="MTIENENITRLTLAGKEIILIGTAHVSKQSAELVKEVIEAERPD SVCIELDEQRYKSIVEGDKWKETDIFKIIKEKKATLLLMNLALSSFQKRLAKEFGTNA GQEMLQGIESAQEVGAELVLADRNIQITFSRIWHNVGFWGKCKLLMEIIFSIFDDEAI SEEELEKLKSQDMLNGILKDFTESFPKLKTPLIDERDQYLSQKIKEAPGEKIVAVLGA AHVPGITEEIHKEHDLQALTELPPKSIVPKILGWSIPALIIALIAYTFYANPDAGVQQ TLSWILWTGTLSALGTALAFGHPLAILTAFLAAPIAALHPLIAAGWFAGLVQAYFKRP NVRDFENLSEDILSLKGFWNNQVTRILLTIVFANIGSATGAFIGGADIARLFFQNL" gene 2870013..2870621 /locus_tag="Dhaf_2667" /db_xref="GeneID:7259674" CDS 2870013..2870621 /locus_tag="Dhaf_2667" /inference="similar to AA sequence:KEGG:Cbei_2528" /note="KEGG: cbe:Cbei_2528 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459129.1" /db_xref="GI:219668694" /db_xref="GeneID:7259674" /translation="MNKAGKFTVGIALIFEIILLVHGLTALWQKQWPDLGLSALAMAT ILVPWLLHYLANRVHLKLPPGFVMAGVVFIFLAQYLGEIRKFYQTFWWWDIFLHGLFG VLAVLFALYMLQSNLKKQGQLSKARFTLFLALLSLCFAMACSAAWELFEYMGDIVLPV KMVKGGLEDTMSDLFSGSLTALLTAAGYYFLWRFMHRDKTRI" gene 2870739..2870963 /locus_tag="Dhaf_2668" /db_xref="GeneID:7259675" CDS 2870739..2870963 /locus_tag="Dhaf_2668" /inference="protein motif:PFAM:PF08984" /note="PFAM: Domain of unknown function DUF1858; KEGG: drm:Dred_1604 hypothetical protein" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1858" /protein_id="YP_002459130.1" /db_xref="GI:219668695" /db_xref="InterPro:IPR015077" /db_xref="GeneID:7259675" /translation="MKTIDLSKTVYEICSADPEAVTIMKELGFKEITNPGMLNTAGRF MTIPKGAAMKKISLAHIKETFAQKGYEIIE" gene 2870974..2872206 /locus_tag="Dhaf_2669" /db_xref="GeneID:7259676" CDS 2870974..2872206 /locus_tag="Dhaf_2669" /inference="protein motif:PFAM:PF04282" /note="PFAM: protein of unknown function DUF438; Hemerythrin HHE cation binding domain protein; KEGG: cth:Cthe_1509 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF438" /protein_id="YP_002459131.1" /db_xref="GI:219668696" /db_xref="InterPro:IPR007380" /db_xref="InterPro:IPR012312" /db_xref="GeneID:7259676" /translation="MSELINNREHRQKVLKELIRELHNGQPVEEVKERFGKLVEGLAA TEISQMEQALIQEGMPVEEIQRLCDVHAAVLGTSVQQIHTPDQGEEQNGHPVHTFQLE NQALEALLKNVITPGLERYEASGDSDALATLITAFRSLWEIDKHYSRKENLLFPIMEQ HGITAPPKVMWGVDDEIRAVIKETRKLLSTEPPRQEEILAKAKEAVTRVPEMIFKEEN ILFPMVLDTFSEDEWVFIAEASSEIGYCLIDEPQKVWKPKSAQGQGNDDKQNDRNTQD GYVEFDAGKLLPEEINAIMNTLPLDITFVGRDGTVKYFTQGKERIFARAKTVLGRRVE NCHPPASVHVVEKVVEELQSGKKDHEDFWIKMGDKYVLIRYYAVRNAEGEYLGIMEIS QDIKEIQDITGEKRLLSE" gene 2872378..2873154 /locus_tag="Dhaf_2670" /db_xref="GeneID:7259677" CDS 2872378..2873154 /locus_tag="Dhaf_2670" /inference="protein motif:PFAM:PF02535" /note="PFAM: zinc/iron permease; KEGG: cbt:CLH_2711 zinc transporter" /codon_start=1 /transl_table=11 /product="zinc transporter ZupT" /protein_id="YP_002459132.1" /db_xref="GI:219668697" /db_xref="InterPro:IPR003689" /db_xref="GeneID:7259677" /translation="MFDERALIALLLSFIAGMATLLGALIIFVTKSKNEKILSASLGF AAGVMLSVSFLDLWTQSQASLISYMGHKMGLLLSVVFLLGGILFALGIDHFVPHEEPS PNEKDKPHQNLYRVGFVSMLAIMFHNFPEGIATFSAGYEDLTMGISIAVAISMHNIPE GITVAMPLYYATGKKKDAFKYTFLSGMAEPFGALLAFLVLRPFINSFNLGAIFAIVAG IMIYIAIEELIPSSRQYGHPRLALFATFAGIIIMPLSHIF" sig_peptide 2872378..2872449 /locus_tag="Dhaf_2670" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.793 at residue 24" gene 2873339..2874067 /locus_tag="Dhaf_2671" /db_xref="GeneID:7259678" CDS 2873339..2874067 /locus_tag="Dhaf_2671" /inference="protein motif:PFAM:PF04239" /note="PFAM: protein of unknown function DUF421; KEGG: cac:CAC1521 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF421" /protein_id="YP_002459133.1" /db_xref="GI:219668698" /db_xref="InterPro:IPR007353" /db_xref="GeneID:7259678" /translation="MSEGLVVIVRSLIGFFSLLIFARIIGKSQISQLTFFDYVLGITI GSMAASLATDLSSRAWPHWVALITWAALGYVMEKITIKWRYAAKFLEGEPVIVVMSGK IMDDALRKNNYRISELMGLLRNKGIFDVSQVDFAILEPNGQLSVLQKPENLPLTPKDM NIKASSSGISSELIYDGMIVEQNLRQFKKDKKWLQKELQKQGIKDVSEVFFASLNPAG SLYIDLYKDRLQNPVDIGDYKGPY" gene 2874080..2874445 /locus_tag="Dhaf_2672" /db_xref="GeneID:7259679" CDS 2874080..2874445 /locus_tag="Dhaf_2672" /inference="similar to AA sequence:KEGG:Cbei_2943" /note="KEGG: cbe:Cbei_2943 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459134.1" /db_xref="GI:219668699" /db_xref="GeneID:7259679" /translation="MRKFLVISIPIVTIVFFVLLMQSGNFLKHPLGNEEGVPAKLEEM IQEVQKENWDSALNHWDGLARDWDKVVKRVQFSAERNEINDFTVSIARLRGAIEAQDK SSGLQLLYEAYEHWADLGQ" gene complement(2874415..2874708) /locus_tag="Dhaf_2673" /db_xref="GeneID:7259680" CDS complement(2874415..2874708) /locus_tag="Dhaf_2673" /inference="protein motif:COG:COG1620" /note="KEGG: gbm:Gbem_2909 L-lactate transport" /codon_start=1 /transl_table=11 /product="L-lactate permease-like protein" /protein_id="YP_002459135.1" /db_xref="GI:219668700" /db_xref="GeneID:7259680" /translation="MFGMLQKVTATQLGMNPVLTVTANLLGGSMGKLISPQSIAIACA ATGLIGKDGLMPHNPQQRRLIAFPPWISVKNCPSGLIARKGSFPHWPRSAQCS" gene complement(2874994..2877576) /locus_tag="Dhaf_2674" /db_xref="GeneID:7259681" CDS complement(2874994..2877576) /locus_tag="Dhaf_2674" /EC_number="3.5.1.28" /inference="protein motif:PRIAM:3.5.1.28" /note="KEGG: pth:PTH_0786 hypothetical protein; PFAM: cell wall hydrolase/autolysin; putative cell wall binding repeat 2-containing protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="YP_002459136.1" /db_xref="GI:219668701" /db_xref="InterPro:IPR002508" /db_xref="InterPro:IPR003646" /db_xref="InterPro:IPR007253" /db_xref="InterPro:IPR010466" /db_xref="InterPro:IPR013247" /db_xref="GeneID:7259681" /translation="MKKVIFTLITSLTLVVSASISVWASPLAYPIERLSGQDRVGTAL SISEKGWTSADTVILCEYADFPDSIASTPFAVSLDAPILLTQGTALDPRVVEEIKRLQ PGRVVLLGGTGVLKPAIEEELGKFDFPIVVERIGGQNRYETSVLLAQKVPNDVVILAN GDTFPDALSAASFAGIKQIPIVLTSKKMPEFVLNYLNETQPSQIIVIGGEGAIPSEGL TDHGFAIETRLGGQDRYETNAAVVSFVQDAYETDDLFLASGITFPDAVAGTVLAAKYK APLLLTEKEDIPTSVYTYMREHMKVEPPRPSPGPSGTPGTPTTRPKQAEITPAGGLNL RESPSSSGAKLATIPQGTLITLLEEQAGWYKTTFADQTGWVAAEYLTLVDPSGSDNQP DKPAEPKTRQGVITAANGLNLRDNPSSSGEKLVTIPKDATIQILAEQSGWYQTTYETK TGWISAEYVSLIPSEASDPPPAAPPAPKKGKSTAANGLNLRATPAAAGEKITTVPGGT LFEIIEEENGWYKISFDSHTGWVSGEYVEIVENTDEDKADDAKADEPAVNPNPPSEET LPEITIDLSVNGTVYILGGSGVISSTAQSIIEGKAFSKYKENLRDFPPLPAEIKKEEP PEEEEPDDPEEPAPPVDTEYDPSREVPVDPFIDIPEYALAGKVIMLDPGHGGPDPGAS GPSKTHEKDNTLPIALALKDILTQAGAEVLMTREDDSSPCTASKYTELEDLKARVALA NSCNADLFISIHNDAFTNPAVNGTTVFYSAANPKNVESLHLAGSIRTSVIDIIKTTDR GVKPGNLYVLNNTKIPAILLEIAFISNPYEEARLQNQTFRENAAAGIFRGIYAYFTTP IPKD" sig_peptide complement(2874994..2875068) /locus_tag="Dhaf_2674" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 25" gene 2877738..2878058 /locus_tag="Dhaf_2675" /db_xref="GeneID:7259682" CDS 2877738..2878058 /locus_tag="Dhaf_2675" /inference="similar to AA sequence:KEGG:cce_3464" /note="KEGG: cyt:cce_3464 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459137.1" /db_xref="GI:219668702" /db_xref="GeneID:7259682" /translation="MDHSEEIRSWQRVVYYILGVIEVLLAFRLIFKLLGANPVSGFVS AIYSLTNLLMSPFLGIFRTASARGVETQAVLEPATLVAMIVYAVIAWGIAKLIEIMKR PKKV" gene 2878259..2880175 /locus_tag="Dhaf_2676" /db_xref="GeneID:7259683" CDS 2878259..2880175 /locus_tag="Dhaf_2676" /EC_number="5.99.1.3" /inference="protein motif:PRIAM:5.99.1.3" /note="KEGG: pth:PTH_0005 type IIA topoisomerase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II" /codon_start=1 /transl_table=11 /product="DNA topoisomerase (ATP-hydrolyzing)" /protein_id="YP_002459138.1" /db_xref="GI:219668703" /db_xref="InterPro:IPR000565" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013506" /db_xref="GeneID:7259683" /translation="MSMDLKYNAESIQVLEGLEAVRKRPGMYIGSTGSKGLHHCAWEI IDNAIDEAGAGFCTRIEVTLNPDGSLTVLDNGRGVPIDIHPVKQIPAVRLAFEQLHAG GKFDGQSYKTSGGLHGVGASVVNALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIK KGIKGSGTKVTFKPDPLIFKETTSFKFDTLRSRLMELAFLNPGLTIVLTDQRKETRSE TFQSKNGVIGFVEHLNKESDYNPVHKKPIFFKGEKDEVIVECAIQYTDGEDEHLRSYV NNIPTDEGGTHESGFRTALTKVFNAYGKKNNIFKKEESLIGDDLKDGLTCVLSVKVRE PQFEGQTKTKLSNTEVEGVVQSLTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKR AKELKKKARDAEVKALSGKLAACSEKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILP LRGKVINTYRAKMDKVLENEEIRSMITAIGAGIGKEFEVDKSNYARVCIMTDADIDGA HIRCLLLTFFYRYMKPLILGGKVYIAQAPLYKVEKEKGKVVRYAYDEGELKDALKELG KSAKLQRYKGLGEMNPEQLWETTLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRR EFLMENIVFTEDDM" gene 2880214..2882640 /locus_tag="Dhaf_2677" /db_xref="GeneID:7259684" CDS 2880214..2882640 /locus_tag="Dhaf_2677" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01063" /note="KEGG: chy:CHY_2704 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller" /codon_start=1 /transl_table=11 /product="DNA gyrase, A subunit" /protein_id="YP_002459139.1" /db_xref="GI:219668704" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005743" /db_xref="InterPro:IPR006691" /db_xref="GeneID:7259684" /translation="MSIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPV HRRIIYAMDELGMTPDKPYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPL IDGQGNFGSIDGDGAAAMRYTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLP SPFPNLLVNGGSGIAVGMASNIPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFP TGGLIIGSQGFTEAYRSGRGKVTMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKI EAQSENGKIEGISEVRDESDREGIRLVVECKKDADPKRILKLLYKYTQLQETFGIINL VISEEGTPRVLGLKEINHSYLQHRREVVLRRTEYELAKAKARAHILEGLVIAINNLDE VLQIIRSSKTPALAKAGLITRFEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKL IAELESILADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPEKPM EVLLTRKGFIKQIPTPTRRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYD AKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVMRSP VKDFLNARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGRKSR GVKGMTLNEGDYVVDALLIQPGADGETGDLITVTEQGYVKRTSLEEYKPQGRAGRGIA IAKIDAEKTGYLVSLIQVGPKEDKLLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNV IINDYIVHVL" gene 2883019..2883372 /locus_tag="Dhaf_2678" /db_xref="GeneID:7259685" CDS 2883019..2883372 /locus_tag="Dhaf_2678" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_1572 predicted methyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459140.1" /db_xref="GI:219668705" /db_xref="GeneID:7259685" /translation="MEKSNKAYKASKNIYDDTLTQSKWWSRLYIRFFWSGVNDVGIAR QVLNMLPDNFEGSLLDVPVGTAVFTTEKYGRMQNAKITCLDYSQDMLQDEILGLCVGD GIQKLNLNINLITRL" gene 2883599..2884612 /locus_tag="Dhaf_2679" /db_xref="GeneID:7259686" CDS 2883599..2884612 /locus_tag="Dhaf_2679" /inference="similar to AA sequence:KEGG:STH2027" /note="KEGG: sth:STH2027 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459141.1" /db_xref="GI:219668706" /db_xref="GeneID:7259686" /translation="MLRGICRMKKAEAFSMTIKRRESDTMNQDLNARLAQAQQGAARL HKVDAMLKKLGEELQELENHEQELKRILAQEMLDVEKLESKGLSAFFHAVRGNLEERI EKERSEALAAKLKYDQAGQDIKEIHASIAKLSAERLNYVDSPAEYRDLYAQKQQILLE EQGAMAQEILALTDEKNRRRINLKEIDEAIEVGGQVLDSLNQALRNLSSAEGWGTWDL LGGGMISGLAKHSHINSAQENIEKTQSLLRQFKTELTDIHIGTELSLKTEGFIKFADF FFDGIIADWFMQTRINESQASVENVKNQVQSIMTKLHELKTQERKRLDRLDVELSELI VKG" gene 2884621..2885883 /locus_tag="Dhaf_2680" /db_xref="GeneID:7259687" CDS 2884621..2885883 /locus_tag="Dhaf_2680" /inference="protein motif:PFAM:PF01871" /note="PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: chy:CHY_2268 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459142.1" /db_xref="GI:219668707" /db_xref="InterPro:IPR002733" /db_xref="InterPro:IPR004183" /db_xref="GeneID:7259687" /translation="MPLVYSIFAPHPPILVPEIGRGEERKCPATLAAYRALAGNLAAA RIDTVLLISPHAPLLREGVALFQDEILKGDFAQFGMPQVKLAFANHQPLAGRLAKELP GGVLYSGRLDHGTLVPLYFLREAGWEGKLVVMSMPLADPEGYGNIIRTVLQDYSEPIA LVASGDLSHRLKEDGPYGLHPSGPEFDRQIFEGLSRDPSAIKEIPQDLTEEAGECGWR SLRLALAVQQGMPKVFSYEGTFGVGYLVAELYQSSSLPQWARQCLAAYLKTGTTQGLT PPDVPLLKLRRPCFVTLHKEGELRGCIGTTAPYRENLAQEIEHNALAAGKDDPRFWPV EAEELPALTITVDVLGEMEKISGLEELDPWRYGVVVRSRGRTGLLLPRLEGVNTAQEQ VTIAKHKAGLGLNEPVEMWRFEVVRYFE" gene 2885907..2886851 /locus_tag="Dhaf_2681" /db_xref="GeneID:7259688" CDS 2885907..2886851 /locus_tag="Dhaf_2681" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: swo:Swol_2293 pyruvate-formate lyase-activating enzyme" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459143.1" /db_xref="GI:219668708" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7259688" /translation="MEEKTASCLLCPQHCRLRSGQTGRCHVRGNQGNGVEPLNYGEAA SWHLDPIEKKPLFHFYPGSRIFSVGGFGCNLNCTFCQNYEISQSRQKGLRVTPEELAR QARGSLGLCFTYSEPTTWFEMIRDTAPLVRQNGGKVVLVSNGTIASRYIEELIPFLDA VNIDIKAFTEEFYQKFCGGRLSWVLDTVERLAGRVHLEITTLVIPDANDDPREIRELG RWLRQLDTPLAWHLSRFFPAYQLNTPPTDPQQLRKLWELAREEVEYVYLGNIAGGGTT FCPQCGQKVILRENYEIRNLLHNGKCPACGRGIFGVGL" gene 2886860..2887318 /locus_tag="Dhaf_2682" /db_xref="GeneID:7259689" CDS 2886860..2887318 /locus_tag="Dhaf_2682" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: sed:SeD_A4682 protein PhnO" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459144.1" /db_xref="GI:219668709" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259689" /translation="MYRKSTLDDCKAAYLLICDMENKELSYDRFETIYRDQINDCRYY CLVCEQDGMVIGLLNIRFEEQLHHGERIAEILEFAIAPLYRNKGIGKKMFAHSCRIAR ENGCYQIEVACNQLRQDTHRFYIRQGMHNFHFKFSKQLAGDNTPENIIGR" gene 2887590..2888288 /locus_tag="Dhaf_2683" /db_xref="GeneID:7259690" CDS 2887590..2888288 /locus_tag="Dhaf_2683" /inference="protein motif:PFAM:PF00877" /note="PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: bha:BH3671 cell wall lytic activity" /codon_start=1 /transl_table=11 /product="NLP/P60 protein" /protein_id="YP_002459145.1" /db_xref="GI:219668710" /db_xref="InterPro:IPR000064" /db_xref="InterPro:IPR002477" /db_xref="GeneID:7259690" /translation="MKKKIVFLLSVMLVMILVSTQTTHAATPLLKVGSRGSAVSTLQS NLQTLGYEVGPIDGIFGAKTKTAVQKFQTASRIQVDGIVGPQTQQALTKALGSKTTAL ESKSTANPSQKTQAILSTAKNYTGVPYLWGGTTPSGFDCSGFTQYVFEKNGITLPRTS NQQYQIGTSVSFNSLIPGDLVFFNFNSGSVVSHVGIYMGDGQFISATSGKGVITYGFT PYWKNAYVGAKRVY" sig_peptide 2887590..2887667 /locus_tag="Dhaf_2683" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 26" gene 2888866..2889798 /locus_tag="Dhaf_2684" /db_xref="GeneID:7259691" CDS 2888866..2889798 /locus_tag="Dhaf_2684" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: cbe:Cbei_3583 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002459146.1" /db_xref="GI:219668711" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7259691" /translation="MTIVTVLCLLWAGFVYQLISVKYESKKYQPDGQMIEVEGHKMHI YAQGEGNPTVVMTVGLGSPSAVVDYYRVLEGLSHYTRAVVYEIPGYGWSEKSTTPRAI EQMTKELYLLLEKSGETPPYVLVGHSMGSLEILHFAQTYPGLVAGVVLVDGGSPEYYR TVKFSTALKAVIHGTRLVTRLGVIRIFGNAATSLGISTMTYFPKDMRNKAKAKFYSNW FNDNSIQELKQLNRNAAIVESNGPIGDIPFVLLSSEKSSKGVPGWDETQKKLLAWSAN SRMKVIQGTSHSMHFNHPEAIVKEIVQVVSPNRQ" gene 2890164..2891366 /locus_tag="Dhaf_2685" /db_xref="GeneID:7259692" CDS 2890164..2891366 /locus_tag="Dhaf_2685" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_0592 predicted transporter protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002459147.1" /db_xref="GI:219668712" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259692" /translation="MSEKKQSLVLLAIFSFAFIAMGVGTITPAIAAIGAAFPQIGFST LLLVSTIPSLVSIPVAIIGGSIAGKSVKYRTLVLFAALMFTIGGIIPYFINDFTLILV SRAFFGLGLGLIMPLNTALIFNLIPPDKQANIMGINGVVMNIGGIVLQLLGGVFASVQ WNYSFLAHGFGLITFLLTLFFLPEPKKHELPAGTADAPAQKLKMPVSIFGWGIAFGVA TILYYPSLTNMSSVLETIGANSAVAGIVLMFMTIGGMLAGIVFGKTFKKFGRQTLSFG LFFFVLSQVLFAFSQSVPLFIIGEALMGFGLTLTMTSINMMAGASVHPSQTPMAMSII VTGMNLGGFLSGYIYAAVMGTLGITTLRFQYYSGIVGFAALLIFFLVLFSMKKPAAPV GPSQASSH" sig_peptide 2890164..2890259 /locus_tag="Dhaf_2685" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.707 at residue 32" gene 2891758..2892294 /locus_tag="Dhaf_2686" /db_xref="GeneID:7259693" CDS 2891758..2892294 /locus_tag="Dhaf_2686" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_1703 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459148.1" /db_xref="GI:219668713" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259693" /translation="MKSIQLKHGPLIIIREAVKEDAQKVVDYLARIGGESDFLTFGPG ELHVSVSDEAALIEESRNAQNKLLLLALADNKVVGCLSFVNGARVRTQHTGEFGVSVS KDYWGEGIGRTMIEELIRWAKDGQTIKKLNLRVRSDHERGIRLYKSFGFVQEGLMTRE LMISGKFYDFCCMGLWLD" gene 2892408..2892800 /locus_tag="Dhaf_2687" /db_xref="GeneID:7259694" CDS 2892408..2892800 /locus_tag="Dhaf_2687" /inference="similar to AA sequence:KEGG:Cbei_3265" /note="KEGG: cbe:Cbei_3265 amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="amino acid-binding ACT domain protein" /protein_id="YP_002459149.1" /db_xref="GI:219668714" /db_xref="GeneID:7259694" /translation="MIKQFNLKVFEEVLGICRLDSNAQVPEWAEGSFLSITRTSDELS IVCSQKHIPQHVKCEGSWRYFRIEGILDFSLIGVLSYLSGLLASQGISIFVISTYDTD YLLIKEQELDKAVAALRAEGHQITIAGG" gene 2892965..2894758 /locus_tag="Dhaf_2688" /db_xref="GeneID:7259695" CDS 2892965..2894758 /locus_tag="Dhaf_2688" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: ctc:CTC00707 transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459150.1" /db_xref="GI:219668715" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7259695" /translation="MLLQEGTNTCFSYLNPGDTIEKAVSIFLDLKIAIIPVLDQEGRL LSIFSHSSLYRAVLAGARSKDRIDPYLITDVVSIANDIPDEQLANFVKMSPVGSVPVL NKEGKVIGLLCKAKMVTTLFRHSEQDLTDLEHTAKELETVKALNETFDTVLNIIRDGI VVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGLSQTSEVLTI RGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKVTFFQEELQKNR TAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLGSDRGK GPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMPL ALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVI NLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRELEN VVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAAALE KAGGNKTKAAKLLNLSRSRLYDKLNKYDLNT" gene 2895071..2895589 /locus_tag="Dhaf_2689" /db_xref="GeneID:7259696" CDS 2895071..2895589 /locus_tag="Dhaf_2689" /inference="protein motif:PFAM:PF02572" /note="PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: tte:TTE0526 ATP:corrinoid adenosyltransferase" /codon_start=1 /transl_table=11 /product="ATP:corrinoid adenosyltransferase BtuR/CobO/CobP" /protein_id="YP_002459151.1" /db_xref="GI:219668716" /db_xref="InterPro:IPR003724" /db_xref="GeneID:7259696" /translation="MKGLLLVYTGNGKGKTTAALGLSLRALGHGQKVGFLQFMKGSKN YGEVKISEKLPNLTLVQTGRDCFVSFENPEPVDIAMAQDGLAILSQWFQEDRFDLIVA DELLVALGFNLVTVQEVLDLIEQRPPRLTLVLTGRYAPDELLAVADTVTIMQEHRHAY QQGVEAKEGMEF" gene 2895586..2896551 /locus_tag="Dhaf_2690" /db_xref="GeneID:7259697" CDS 2895586..2896551 /locus_tag="Dhaf_2690" /inference="protein motif:TFAM:TIGR00750" /note="TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: chy:CHY_0570 LAO/AO transport system ATPase" /codon_start=1 /transl_table=11 /product="LAO/AO transport system ATPase" /protein_id="YP_002459152.1" /db_xref="GI:219668717" /db_xref="InterPro:IPR005129" /db_xref="GeneID:7259697" /translation="MKISAWEPWLERLWQGDKRAAAKLISQVEDNQGRVEIMCRILPR TGQRMVLGITGPPGAGKSSLVGALTQLYREQHDKVGIVAVDPSSPYSGGAILGDRIRM QSHGTDPGVFIRSMGTRGHLGGVARFTTDVLKILEAAGYERLLLETVGVGQSELEIME CANTVLLVLNPGTGDGIQAIKAGIMEIADIFVVNKADLPGAERLKNDIEMVLDLNGKK AWRAPVVMTSTLEQRGLNELRDHIARHQTFLTESGKCRQRRHNAFTQEVWRHWEAIAR QAFAAAWQDLPRSEGDDLEPGNPYTLAEEIWASIVSGRFTDRSAP" gene 2896624..2898261 /locus_tag="Dhaf_2691" /db_xref="GeneID:7259698" CDS 2896624..2898261 /locus_tag="Dhaf_2691" /EC_number="5.4.99.2" /inference="protein motif:TFAM:TIGR00641" /note="KEGG: cau:Caur_1844 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase, large subunit" /protein_id="YP_002459153.1" /db_xref="GI:219668718" /db_xref="InterPro:IPR006098" /db_xref="InterPro:IPR006099" /db_xref="GeneID:7259698" /translation="MQEDFSRWQKSYQEQKERQGPFMTVSSAPIAPLYAPDNTPEIDF EKDINYSGAYPYTRGVRTNMYRGRLWTMRQFAGFATAVESNQRYKFLLSQGQTGLSVA FDMPTIMGYDSDHPRAYGEVGRVGVAVDSLQDMETLFKDIPLDQVSTSMTTNAPAAIL WSMYLVTAEKQGVPAHKLTGTIQNDILKEYIAQKSWIFPPEPSLRLITDSFAFARDHV PKWNTISISGYHIREAGATALQELAFTLADGFAYVEAGIKAGLDVDDFAPRLSFFFNS HTDFFEEIAKYRAARRIWARHMKENYGAKKEESLLLRFHTQTAGCSLTAQQPENNIIR TAYQAMSAVLGGTQSLHTNSMDEVLALPSEKAVQIALRTQQILAYETGIVNTIDPLAG SYFVEALTRQMEEGAEEYFRKIEERGGVLAAIHQNFFQQEIADAAYRYQKEIEGKDRI IVGVNGFQTEEALEIDLLKIDPEIERNQAQRVKELRATRDNLHVQNTLAALKATALSS DNLIPKIIDAVRAYATEGEIVAVLKEVFGEYREQSVF" gene 2898289..2898711 /locus_tag="Dhaf_2692" /db_xref="GeneID:7259699" CDS 2898289..2898711 /locus_tag="Dhaf_2692" /inference="protein motif:PFAM:PF02310" /note="PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE2388 methylmalonyl-CoA mutase C-terminal domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002459154.1" /db_xref="GI:219668719" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR006159" /db_xref="GeneID:7259699" /translation="MGLDREQARIRVLVGKPGLDGHDRGAKVIARALRDGGMEVIYSG LHQTPEQIVQAAIQEDVDVIGLSILSGSHMTVFPRVRELLGEQNAEDIIVMGGGTLPE EDIKALIEEGCAEALFTPGTPTTDIIQWIKDRVEQKQG" gene 2899058..2899897 /locus_tag="Dhaf_2693" /db_xref="GeneID:7259700" CDS 2899058..2899897 /locus_tag="Dhaf_2693" /EC_number="1.1.1.157" /inference="protein motif:PRIAM:1.1.1.157" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: lsp:Bsph_0972 3-hydroxybutyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxybutyryl-CoA dehydrogenase" /protein_id="YP_002459155.1" /db_xref="GI:219668720" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="InterPro:IPR006180" /db_xref="GeneID:7259700" /translation="MKKIMVIGAGQMGGGIAQVAAQAGYSVILNDLKEEFVTRGLSVI EKNLRRNVEKGKLEATESAATLGRITQSTALQDAASADLVIEAAVENMVIKSQLFTQL DEICPEHTILATNTSSLPITEIAAFTKRPDRVIGMHFMNPVPVMKLVEVIRGLATSDE VYKTIEALSQEMGKTPVEVNDAPGFVANRILVPMINEAVYTLYEGIATVEDIDQVMKL GMNHPMGPLALADLIGLDTVLSISEILHEGLGDKYRPCPLLRKYVKAGWYGRKSGRGF YQY" sig_peptide 2899058..2899123 /locus_tag="Dhaf_2693" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.864) with cleavage site probability 0.511 at residue 22" gene 2899949..2901310 /locus_tag="Dhaf_2694" /db_xref="GeneID:7259701" CDS 2899949..2901310 /locus_tag="Dhaf_2694" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="KEGG: swo:Swol_1486 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_002459156.1" /db_xref="GI:219668721" /db_xref="InterPro:IPR002155" /db_xref="GeneID:7259701" /translation="MSEKVVQKLEHTRKNYYKDAEIAAYGERKPDYSTLGRKIENTYA RQRQVVCVEACRTPYGKSLGALLEYDAAQLGALAIKEVLRRTKGKVAPGEVDYVIMGH VVQAGSGQVSSRQATLLAGLPEHVPSITVNKVCSSGVKTIDLGAQMIALGRAEIVIAG GQESMSNIPFSLPDMRRGRKMGLPTIDCVDLMVKDGLWDSFYERHMAIHGSEVADEFG YSREEQDEWALHSQLAASAAIAAGKLDAEIFPVAVKTGKETLEKDEGPRANTTLEGLA KLGPVFDHISAVTGKPGSVTAGNAPGTNDGGDVCLLMSRAKADELGLKPLFSIVDYAE VSQPTKDIATVPGLSIKKVLEQNKLTLEDIKLIEINEAFAAVALVSARTILGMTKEQM YEKVNVNGGAIAYGHPIGATGARIVMTLAYELKRRGGGYGVCGICAGHAQGDAMLIYV EPD" gene 2901346..2902494 /locus_tag="Dhaf_2695" /db_xref="GeneID:7259702" CDS 2901346..2902494 /locus_tag="Dhaf_2695" /inference="protein motif:PFAM:PF00441" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: swo:Swol_1483 butyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_002459157.1" /db_xref="GI:219668722" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7259702" /translation="MNFELSGETLMIRDMVRKFAQNQLAPLAPELDKSHEFPMATWNK MRELGLTGFPIPEEWGGGGGSYLDFAIIVEELAKACASTAVITSVHTGLGCMSMYLYG SQQLKEKYLERLATGEIIGAYALTEPNAGSDAGALRCKAEDRGDHFLVNGGKIFITNG TVATTFCTFVKTDPTQPKGKGITCLLIEKDLPGFTISKPVEKMGMHGSPTVELIFENV KVPKENVLGEINNGFAVAMGLLAGGRITIGAQGLGIAEGALDYTINYIKERQQFDKPL AANQGVQFMIADMATKIEAAQMLIYRAAWLKDHQLPHNKEASMAKLFATDVAMEVTTN CVQLLGGYGYCSEYPVERMMRDAKITQIYEGSNQIQRMIIGREVIGRF" gene 2902606..2903574 /locus_tag="Dhaf_2696" /db_xref="GeneID:7259703" CDS 2902606..2903574 /locus_tag="Dhaf_2696" /EC_number="2.8.3.12" /inference="protein motif:PRIAM:2.8.3.12" /note="PFAM: coenzyme A transferase; KEGG: drm:Dred_0403 glutaconate CoA-transferase" /codon_start=1 /transl_table=11 /product="Glutaconate CoA-transferase" /protein_id="YP_002459158.1" /db_xref="GI:219668723" /db_xref="InterPro:IPR004165" /db_xref="GeneID:7259703" /translation="MARPQNVSLTEAIGQIKDGDMLTFGGFTVWRRPMAAIYEIIRQQ KRNLHLVEVNGGTHDDMLVGAGCVGVWESCWSGHELYGKLGGNLARKIENKEILYEDW SHIHALYRLAAAAKGVPFLPTYSAIGCDMLNPENDNLGKAGLRDGSNRHIGKHKFVTY KEPFTDSEITLIPAASPDWCLTHVQMVGEEGTVRVDGLRFSDEEAIKASKHNIIIAEQ VVPEEYLRREPTRNMLPGYFVDYIVELPWGAHPTGLYGAYEPDGPFINHFFKSTRTQE GFDQWAEEWIFGVKDFEEYLSKLGMTRLENLRANPALGYSSKLKRG" gene 2903579..2904388 /locus_tag="Dhaf_2697" /db_xref="GeneID:7259704" CDS 2903579..2904388 /locus_tag="Dhaf_2697" /inference="protein motif:PFAM:PF01144" /note="PFAM: coenzyme A transferase; KEGG: drm:Dred_0404 glutaconate CoA-transferase" /codon_start=1 /transl_table=11 /product="coenzyme A transferase" /protein_id="YP_002459159.1" /db_xref="GI:219668724" /db_xref="InterPro:IPR004165" /db_xref="GeneID:7259704" /translation="MESKKEHSKIGEFKPMDLLACAAAREVRDGEVVFAGTGLPMLAI MLAQKTQAPTAVCIYESGSIDGRPIDLPTSVADARCSYQAAVADGLMDAFSQLQSGRI DLAYLGGAEVDMYGNVNTTFMGGPTGKRLTGSGGNTDIHSLARRSVLIMPQINQKRRF VEKVSYITSPGWKFPHGPNREWVPKQEVYGAAFRGGPAAVISDMGIYRFDEQGEMYLD TVHPGFSAEDCRDNCCFDLNISKVRGETPTPTYEELELLHKVIDPEGIIMK" gene 2904639..2904851 /locus_tag="Dhaf_2698" /db_xref="GeneID:7259705" CDS 2904639..2904851 /locus_tag="Dhaf_2698" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459160.1" /db_xref="GI:219668725" /db_xref="GeneID:7259705" /translation="MSKLYAIYTLTGNEERFLGQAYLTAKDLEAIEESFTGTPESEHY IALTDGDQVNVNAIDSIEEITDDGEE" gene complement(2905060..2906043) /locus_tag="Dhaf_2699" /db_xref="GeneID:7259706" CDS complement(2905060..2906043) /locus_tag="Dhaf_2699" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cpy:Cphy_2195 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_002459161.1" /db_xref="GI:219668726" /db_xref="InterPro:IPR002104" /db_xref="InterPro:IPR004107" /db_xref="GeneID:7259706" /translation="MADIFDIPLPSYAFTYINHLGVINRSPHTQKAYAQELFLFLKFI CDYKPGFPPSPSSLTIGHLQQIQHTDVEAYLNWARTQRKNGVRALARKQAAIKSFYRY LLREDLILKDITIKLNPISQNQKAPKALEPEQIADLVDIIETGTGLSEGQLKYHLYTE KRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGCFAVIRKGNKETNIYFNTEVATAIQ DYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLIKKYMAILQNFGHNTEGYSAHKL RSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDEQLRRAADHIKFR" gene 2906261..2906698 /locus_tag="Dhaf_2700" /db_xref="GeneID:7259707" CDS 2906261..2906698 /locus_tag="Dhaf_2700" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cyt:cce_0037 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459162.1" /db_xref="GI:219668727" /db_xref="GeneID:7259707" /translation="MDKLDLILERINSIDTSLKAEIKSLDEKLTSKMTSMETHMTSMD QRMTSMETHMTSMDQRMTSMETRMTSMDQRMTSMEARMTSTEDRITSMDRALRAEMKS LNDKVDHVAQMQKLTWEAVKDLDKEVIRHSDELRAIDSKVKAL" gene 2906994..2907800 /locus_tag="Dhaf_2701" /db_xref="GeneID:7259708" CDS 2906994..2907800 /locus_tag="Dhaf_2701" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mfa:Mfla_1456 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459163.1" /db_xref="GI:219668728" /db_xref="GeneID:7259708" /translation="MSLMSNVVTRLELKTVHVYNFEQAGVQELVIYDDFDTYRSDGQF RKKTPGRVGKNSDEVSARDRGIAIARAKKTLRRVALHNQLTRLMTLTTQENIGDFERL DGLFKKFIFGLRDHYPDFKYIGVRERQKRGAVHYHLLINRYIPQAVAHKLWVSLVKKG TADFRFVEGLQAINYCLKYLGKSMEDPFVTKKGHNAKSYLCSTSLDRDFKKSRKVIHF YMQCLQDYFAYEDFLRSLPLSQDNVFFDKISTFDVAGETKECRSILLKTG" gene 2907807..2908103 /locus_tag="Dhaf_2702" /db_xref="GeneID:7259709" CDS 2907807..2908103 /locus_tag="Dhaf_2702" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459164.1" /db_xref="GI:219668729" /db_xref="GeneID:7259709" /translation="MFALYRLDLEDGKYTILLQEGLGKFSFEALRHGKSWRDLVGDNL VFALVSRIRELEATLNDACEEIKELEGSLDDAYYEEPSCSDEFDERIRCNEDDK" gene 2908124..2908360 /locus_tag="Dhaf_2703" /db_xref="GeneID:7259710" CDS 2908124..2908360 /locus_tag="Dhaf_2703" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459165.1" /db_xref="GI:219668730" /db_xref="GeneID:7259710" /translation="MAMVTYGSVTGRVVGKVEGDYKGKPNVTFQLLQQKGNRAGFAQV RILNDGRELPKEGEDVTFSGVLYGYQGGVLVLVD" gene 2908374..2909537 /locus_tag="Dhaf_2704" /db_xref="GeneID:7259711" CDS 2908374..2909537 /locus_tag="Dhaf_2704" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459166.1" /db_xref="GI:219668731" /db_xref="GeneID:7259711" /translation="MRYKIILLTLLFMLVTPGVFAADYPDFSSVLSQHNEYPLKGLIM TKVSNDYTFSVIEGPGTIVVQDIYTDQYGNMRLSLYSTNGNLQLTQYINTGGGWNFSS CTGLVSGWVKSLALYNEGIQSVLFSTFDLTDGVDSIPVGEMGTIEDGQYVPPNVPVIG EGVTFISPSSGYKDTPSTWQFRVMYNMPVDLSAEKEDIALQVLGGQEGTGRVISHDFN FEMDSTGQRWARGIVTFERGVKIGVNTISFNVSYKYKTLANHLTVERFTGIVDEDGDG IDDRTGQPIQPPEPEPPVDETPQRDDYEDGVLGSISYSLDYVKHYITAPFRFIGESLS GFVEWLQTSSGWVASVSGFFGAIFAFLPAELSSALIMLFMVVVVFTVMRVMRG" sig_peptide 2908374..2908439 /locus_tag="Dhaf_2704" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" gene 2909542..2909703 /locus_tag="Dhaf_2705" /db_xref="GeneID:7259712" CDS 2909542..2909703 /locus_tag="Dhaf_2705" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459167.1" /db_xref="GI:219668732" /db_xref="GeneID:7259712" /translation="MLQALEIIFNGVWDILSNTIPVSSTISFTLWQYFLFILIVIVLI RQLFGRGGE" gene 2909704..2909868 /locus_tag="Dhaf_2706" /db_xref="GeneID:7259713" CDS 2909704..2909868 /locus_tag="Dhaf_2706" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459168.1" /db_xref="GI:219668733" /db_xref="GeneID:7259713" /translation="MQIVDVVISLVGTPPEGFEATAYKTACILLLVFYCFIFAVILQF QRAFRRRGKS" gene 2909865..2910023 /locus_tag="Dhaf_2707" /db_xref="GeneID:7259714" CDS 2909865..2910023 /locus_tag="Dhaf_2707" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459169.1" /db_xref="GI:219668734" /db_xref="GeneID:7259714" /translation="MTDAIALIISLLTDILDLMPNTPFIYLYALAIVLVILEEVLYWV TGSWLRRR" gene 2910056..2910214 /locus_tag="Dhaf_2708" /db_xref="GeneID:7259715" CDS 2910056..2910214 /locus_tag="Dhaf_2708" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459170.1" /db_xref="GI:219668735" /db_xref="GeneID:7259715" /translation="MEAIMTSVEAVVSTVTGTVTTIVGVIVAQPLLLIPVGIGLLGAG VGLVKRFI" gene 2910272..2911138 /locus_tag="Dhaf_2709" /db_xref="GeneID:7259716" CDS 2910272..2911138 /locus_tag="Dhaf_2709" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mms:mma_2582 ATPases of the AAA+ class" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459171.1" /db_xref="GI:219668736" /db_xref="GeneID:7259716" /translation="MGFVLVLVAILAFLFWVSAPPEPNGVVLYFANIGTGKTTYLSKL VQAELKRMDKGKSKYRYIVSNAVISGVIYEPNFRALLKRAAMADTLLLIDEGSIEYNN RKMNLTEHEIRYLKLIRHYKSTIIVVSQSHDDVDVTLRRLYTQIYLLRYLPFFTLIQP IKKKVGIDEVTKQIIDEYQFRWPFSWRVFLRPLYFKYFDSWWVPPDIEIIDFELEEFK AKLRPRYKRERKWFGLVKGKELQEELSGGGGGSPDVSGGHTSPDAIKTFYSFYPKSLI RKILRRANENDA" gene 2911221..2911487 /locus_tag="Dhaf_2710" /db_xref="GeneID:7259717" CDS 2911221..2911487 /locus_tag="Dhaf_2710" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459172.1" /db_xref="GI:219668737" /db_xref="GeneID:7259717" /translation="MEELKGLPPEMQERITSYVRHNEELGVSSKLLKVVSYKFLSEVF FFENGLLCRFLQYSGDSSVSFDCFSLDNLRNMVALLDGELLQRD" gene 2911539..2911721 /locus_tag="Dhaf_2711" /db_xref="GeneID:7259718" CDS 2911539..2911721 /locus_tag="Dhaf_2711" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459173.1" /db_xref="GI:219668738" /db_xref="GeneID:7259718" /translation="MATLPRITVSISKEDQDVLNKVVERLGLSSPGQLLRMLCSGDAD RIEWICKGFKDAHKLF" gene 2911732..2911923 /locus_tag="Dhaf_2712" /db_xref="GeneID:7259719" CDS 2911732..2911923 /locus_tag="Dhaf_2712" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459174.1" /db_xref="GI:219668739" /db_xref="GeneID:7259719" /translation="MHFKAETVEQFKVLRFIEEIFDITCISVKLKDRYSVEVIDMVGG SICFVYKDGEIIELYPCGN" gene 2911953..2912165 /locus_tag="Dhaf_2713" /db_xref="GeneID:7259720" CDS 2911953..2912165 /locus_tag="Dhaf_2713" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459175.1" /db_xref="GI:219668740" /db_xref="GeneID:7259720" /translation="MDKADLILERLTAMDRAFRSEMKTLNDKIDRVSDEVKQVSRMQK LTWEAVKDLDKEVVRHDDEINKIKAL" gene 2913208..2913390 /locus_tag="Dhaf_2714" /db_xref="GeneID:7259721" CDS 2913208..2913390 /locus_tag="Dhaf_2714" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459176.1" /db_xref="GI:219668741" /db_xref="GeneID:7259721" /translation="MARPEKNLNENLILDLYKQGYTSREIAKQVGVSPTTVMNRIRKY GTVSVSFSVKRDFIQN" gene complement(2913544..2913774) /locus_tag="Dhaf_2715" /db_xref="GeneID:7259722" CDS complement(2913544..2913774) /locus_tag="Dhaf_2715" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cac:CAC1831 Zn-finger domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459177.1" /db_xref="GI:219668742" /db_xref="GeneID:7259722" /translation="MKQYGESCVLENRLCTECGECDRCELNSEKTCDNCCQCIESTAD FAGIEIEEIIINTEDIRTKHPVKTFRIKNEDN" gene complement(2913821..2914879) /locus_tag="Dhaf_2716" /db_xref="GeneID:7259723" CDS complement(2913821..2914879) /locus_tag="Dhaf_2716" /EC_number="3.4.16.4" /inference="protein motif:PRIAM:3.4.16.4" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: pth:PTH_1277 D-alanyl-D-alanine carboxypeptidase" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_002459178.1" /db_xref="GI:219668743" /db_xref="InterPro:IPR001967" /db_xref="GeneID:7259723" /translation="MSKKSRKRVFLTFLTMIATAAIVLTFFPGLLDRTGLASTLHTLS SNLLNGQENPDKGASLDKGAGKSNLNLTKTSQSQVDANQFTPPEDSSYLMLNLQTGER LLEKNGDTHRAPASTVKLLTGLLVHEKLQADELITLGEEVKVEGSVLGFKPGDKILVK DLFTAMYVYSANDAANALAVAAYGTKEQFIQAMNSYAAELGCQDSQFKTADGMPAEDQ YTTAKDLAIIAAKVTETPVLMDYINQKKASVEWTDANGWKQVREISNTNQLLGIYPGD QGLKTGTTTEAGQCLVTYITSEDGDLLLVLLGSKQRYTDTVELLDQGMAKIRTRSALK NILSSPDAFYNIPGFFVP" sig_peptide complement(2913821..2913883) /locus_tag="Dhaf_2716" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.613 at residue 21" gene complement(2915023..2915841) /locus_tag="Dhaf_2717" /db_xref="GeneID:7259724" CDS complement(2915023..2915841) /locus_tag="Dhaf_2717" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidase M23; KEGG: chy:CHY_0861 M24/M37 family peptidase" /codon_start=1 /transl_table=11 /product="Peptidase M23" /protein_id="YP_002459179.1" /db_xref="GI:219668744" /db_xref="InterPro:IPR016047" /db_xref="GeneID:7259724" /translation="MRTRKGLKPRQKHWTLFLKLLVVILISAVAWKGIHKPPKISADI YPYLTNLSAELVLQCQKEGEGISPEAWADLIAVRSTVEIDAEHYLIQQLQQGIGLQDI VWKNKEIQISEDVVRQILERRQILLTYPFYEPGRFAFPVMGQVWYMDTFGADREGGAR RHEGTDIFGAEGIPIISAGNGKVEKLGWNRLGGERVGVRGEDGNYYYYAHLKAINPQL REGQEVRKGDFLGTLGHTGDALTTPDHLHFGIELPNGEWVNPYPFLYIWQQSQS" sig_peptide complement(2915023..2915121) /locus_tag="Dhaf_2717" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.813) with cleavage site probability 0.414 at residue 33" gene complement(2915901..2916263) /locus_tag="Dhaf_2718" /db_xref="GeneID:7259725" CDS complement(2915901..2916263) /locus_tag="Dhaf_2718" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: bpu:BPUM_1687 LysM family cell division regulator" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002459180.1" /db_xref="GI:219668745" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7259725" /translation="MSACSSSVRNYRGHYRSYRNYRMKQLQRQLCSYMLLFLMVFGSM GWFFWDWSQANSRVEDLAFQPQIVQSGDTLWSLAENSGLQIDTRTLVLKIMEYNQLTD TTIQTGQVIYTPILKNQP" gene 2916434..2917048 /locus_tag="Dhaf_2719" /db_xref="GeneID:7259726" CDS 2916434..2917048 /locus_tag="Dhaf_2719" /EC_number="3.4.21.88" /inference="protein motif:TFAM:TIGR00498" /note="KEGG: aoe:Clos_1549 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein" /codon_start=1 /transl_table=11 /product="SOS-response transcriptional repressor, LexA" /protein_id="YP_002459181.1" /db_xref="GI:219668746" /db_xref="InterPro:IPR006197" /db_xref="InterPro:IPR006199" /db_xref="InterPro:IPR006200" /db_xref="InterPro:IPR011056" /db_xref="GeneID:7259726" /translation="MYPDLSQRQTDILEYIKRVIREKGYPPSVREIGDAVGLMSSSTV HGHLQTIEEKGYIRRDPTKPRAIEILDSSSDANEKKTVFVPIIGKVTAGQPILAQENI EDTFPLPVDVVNSDTVFMLRVKGESMIDAGIMDGDLILVRQQKVARNGEIVVAMIDEE ATVKRFYKEKTLIRLQPENPYMEPIYSQDVTILGKVIGVFRILH" gene 2917234..2918034 /locus_tag="Dhaf_2720" /db_xref="GeneID:7259727" CDS 2917234..2918034 /locus_tag="Dhaf_2720" /inference="protein motif:PFAM:PF02517" /note="PFAM: Abortive infection protein; KEGG: cpy:Cphy_2236 abortive infection protein" /codon_start=1 /transl_table=11 /product="Abortive infection protein" /protein_id="YP_002459182.1" /db_xref="GI:219668747" /db_xref="InterPro:IPR003675" /db_xref="GeneID:7259727" /translation="MIDKKIIIQFTTLTFCIAYLVSGALIALGQFGYSVHNWVHSLQQ FGMNIPFAIYILSPAIASYIVLKKNNKIADFKEWLKTVFYAKNNISLYLFVVAGLALY FLIHIAVSGPTAMVLPFYTFFLSLPGNLIIGGLEEAGWMYVLQPELDKKYGFVLSSLF VGIIWILWHIPLFFIPGTNHGEGLINFWMFAVQLMAFRFFNGAIYKISGKGRVFMCVL FHTMFNAVSPLFGTMTMTWAGTIAANTVIVLVSMVTVVIYDQKSRRMV" sig_peptide 2917234..2917317 /locus_tag="Dhaf_2720" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.835) with cleavage site probability 0.412 at residue 28" gene complement(2918089..2919174) /gene="ddl" /locus_tag="Dhaf_2721" /db_xref="GeneID:7259728" CDS complement(2918089..2919174) /gene="ddl" /locus_tag="Dhaf_2721" /EC_number="6.3.2.4" /inference="protein motif:TFAM:TIGR01205" /note="D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli" /codon_start=1 /transl_table=11 /product="D-alanyl-alanine synthetase A" /protein_id="YP_002459183.1" /db_xref="GI:219668748" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR000291" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR005905" /db_xref="InterPro:IPR011095" /db_xref="InterPro:IPR011127" /db_xref="InterPro:IPR011761" /db_xref="GeneID:7259728" /translation="MTRQKIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIA KNGQWHWGIRPEQWQQDPALEGIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLH GPFGEDGTIQGLFEMANIPYAGSGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTM LQKPMEQLLDNIEHSLGYPCFVKPANLGSSVGISKARNREELIQALQLAAEYDRKLVV EQNIVGREIELSVLGNEDAQASIPGEILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVV RSLQEKAVAAFKAVEACGLSRVDFFVTEGGQIYINEINTMPGFTQISMYPKLWEASGI PYTELITRLIELGFQRFRDSRSRKISR" gene complement(2919326..2919895) /locus_tag="Dhaf_2722" /db_xref="GeneID:7259729" CDS complement(2919326..2919895) /locus_tag="Dhaf_2722" /EC_number="3.4.21.89" /inference="protein motif:TFAM:TIGR02227" /note="KEGG: cyt:cce_3621 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="YP_002459184.1" /db_xref="GI:219668749" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR011056" /db_xref="GeneID:7259729" /translation="MGNEQDINEQDIKVKAKSMFKTIIEVIEIVIIAFALSWVIRTFV LEARLVPTGSMLPTIQLQDRIIVDKFFFKHFGDFERGDIIVFHPPSSAHSSDDFIKRL IALPGDTIEIKDHKTYINGQEVEEPYVMEPQIKNLEPLVVPEGSVFVMGDNRNSSADS REWGFLPIENISGMTLFRYWPLNHIGTID" gene complement(2919906..2921168) /locus_tag="Dhaf_2723" /db_xref="GeneID:7259730" CDS complement(2919906..2921168) /locus_tag="Dhaf_2723" /inference="protein motif:PFAM:PF06838" /note="PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Aluminium resistance family protein; KEGG: hmo:HM1_2572 aluminium resistance protein" /codon_start=1 /transl_table=11 /product="Aluminium resistance family protein" /protein_id="YP_002459185.1" /db_xref="GI:219668750" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR009651" /db_xref="GeneID:7259730" /translation="MFLDHLPSKILEAKNQAEQLLTLQEKPILDIAEYNHAKVLAAFQ EERVSTYHLQGTTGYGLGDSGRETLDRVMARILGTEAALVRGQFVSGTHAIATALFGV LRPGDHFISVTGDPYDTLEEVIGIRGTGQGSLKDFGVSYDSVPLSEEGTIQHSLVSQG IKPNTKMLILQRSRGYAWRNSLPMEQIAAFVAYVREHFPHLIIFVDNCYGELVEKCEP GDVGADLMAGSLIKNLGGSLAPTGGYIAGRQELVEKAACRLTAPGIGGEVGATLSWQL QFFQGLFFSPLTVSEAIRGAIFSAAFWQALGFEVNPLPDALRTDLIQAVKLNSREAMI AFCQGFQKGSPVDSHVLPIPSGMPGYEDEVIMAGGTFIQGATSEFSADGPMRDPFIAY QQGGVSMNYIKFGNLLAAQKLWEQGLLK" gene complement(2921246..2922838) /locus_tag="Dhaf_2724" /db_xref="GeneID:7259731" CDS complement(2921246..2922838) /locus_tag="Dhaf_2724" /inference="protein motif:TFAM:TIGR03156" /note="TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cno:NT01CX_1813 GTP-binding protein" /codon_start=1 /transl_table=11 /product="GTP-binding proten HflX" /protein_id="YP_002459186.1" /db_xref="GI:219668751" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR016496" /db_xref="GeneID:7259731" /translation="MDILGDISGIRGTQLKELKDLTSLRTDRPELIHDDLLMGICRLT SLWNKEIALYINRSGMVIAVAIGQHAAVKLPPLPARQAGRLRCLHTHPSGNPQLSPMD LSALSSAGLESMSSIGVSNGQITGVEIAFSGDSDYQILALNPKEFVNFSYDGAVNDYR SRPASPSLKVSEQEKAFLVALEEEELGLELLTELTELAHSSGVEVVGQLLQPKRYGSP VSYLGKGKLQEMTQHLQNSGANVLICDDELLPVQLRTLEQATGVKVLDRTTLILDIFA QRAKSREGKLQVELAQLKHLLPRLTGQGLSLSRLGGGVGTRGPGESKLEMDKRRVRKK INLLENELGEIRKTRTTQRRQREKSGIPLIALVGYTNAGKTTFLQKAMEQTRSKGESV KGEDKLFATLDPIVRGIRLDQRTEILLSDTVGFIQKLPHQLLHAFLATLEEVQNADVL IHVLDASHPRALERADTVHKILEQLECHHKPRLTLLNKIDQLDHPSDLSRLAQELSHP IPMSLIANTSLTPVWNKVLELL" gene complement(2922887..2923852) /locus_tag="Dhaf_2725" /db_xref="GeneID:7259732" CDS complement(2922887..2923852) /locus_tag="Dhaf_2725" /inference="protein motif:PFAM:PF00004" /note="PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pth:PTH_1346 ATPase of the AAA+ class" /codon_start=1 /transl_table=11 /product="AAA ATPase central domain protein" /protein_id="YP_002459187.1" /db_xref="GI:219668752" /db_xref="InterPro:IPR000641" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:7259732" /translation="MGIRITFPSEKNQAPIVQTPRTERNAAIVDSSSELSRGRKAAHH SSENGTMAEIIAELNALVGLSTVKRLIHEIQAYIEIQKRRTREKLVAEPLVLHMIFRG NPGTGKTTVARLIGRLFKEMEVLQKGHIIECERADLVGEYIGHTAQKTRDMVKKALGG ILFIDEAYSLARGGEKDFGKEAIDALVKAMEDHKTDLILILAGYKHEMEWFLQTNPGL RSRFPIHIDFPDYSIEELLSIGDSMLKTRQYQFTAEARDVFRFMLQGVLNSHPYAGNA RLVRNMVEKAIRKQAVRLYAKPTSSREELMGILPCDLNLDDDDLK" gene complement(2923920..2925752) /locus_tag="Dhaf_2726" /db_xref="GeneID:7259733" CDS complement(2923920..2925752) /locus_tag="Dhaf_2726" /inference="protein motif:TFAM:TIGR01394" /note="TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA" /codon_start=1 /transl_table=11 /product="GTP-binding protein TypA" /protein_id="YP_002459188.1" /db_xref="GI:219668753" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006298" /db_xref="GeneID:7259733" /translation="MKSMNIRNIAIIAHVDHGKTTLVDAMLRQSGTFRANQNVMERVM DSNDLERERGITILSKNTAVNWLDTKINIVDTPGHADFGGEVERVLKMVNGVLLIVDS FEGPMPQTRFVLRKALELKLVPIVVINKIDRPDARPAEVVDEVLDLFIELGADEEQLD FPVVYASARDGLAGLDPDQLTDSLEPLFSVVLEHIPAPSVDVEAPLQLLVTTLDYDDY VGKIVIGRIVRGKVRQGENIALIKRDGVLERAKIGKVYTYEGLKRIDVPEAEAGEIVA LTGLTTANIGETVADANNPEALPVIEVDEPTLNMNFIVNNSPFAGLEGEFVTSRKLRE RLFKEIETNVSLRVEETDSADSFKVSGRGELHLSILIENMRREGYELQVSKPEVIYKM IDGEKCEPIEYLICDIPETAMGTVIELLGKRKAEMINMAHISQTQIRVEFKVPARGLI GFRGDFLTETRGEGIMSHVFHGYEPYKGEIPGRSRGVLIAFETGEATTYGLHSAQERG IIFIDPGTKIYEGMIVGESNREQDIEVNVARKKHVTNMRASNSEEALRLEKAKVFTLE QALEYIDDDELVEITPKSVRLRKKHLDKNARVRYAKSLASNSAK" gene complement(2925932..2926036) /locus_tag="Dhaf_2727" /db_xref="GeneID:7259734" CDS complement(2925932..2926036) /locus_tag="Dhaf_2727" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459189.1" /db_xref="GI:219668754" /db_xref="GeneID:7259734" /translation="METGRFQPAIEQERFGRVPDGAEGLSVSFVRAAY" gene 2926246..2926341 /locus_tag="Dhaf_2728" /db_xref="GeneID:7259735" CDS 2926246..2926341 /locus_tag="Dhaf_2728" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459190.1" /db_xref="GI:219668755" /db_xref="GeneID:7259735" /translation="MGAKKSPEAKPMKSQQEAQIPREKLKETRKT" gene complement(2926629..2926880) /locus_tag="Dhaf_2729" /db_xref="GeneID:7259736" CDS complement(2926629..2926880) /locus_tag="Dhaf_2729" /inference="protein motif:TFAM:TIGR02383" /note="TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: mta:Moth_1116 RNA-binding protein Hfq" /codon_start=1 /transl_table=11 /product="RNA chaperone Hfq" /protein_id="YP_002459191.1" /db_xref="GI:219668756" /db_xref="InterPro:IPR001163" /db_xref="InterPro:IPR005001" /db_xref="GeneID:7259736" /translation="MNKAPINLQDTFLNQVRKENMPVTIYLVNGFQLKGLVRGFDNFT VVIEFEGKQQMVYKHAISTVMPLRPINLVAASQSSTEER" gene complement(2926915..2927859) /locus_tag="Dhaf_2730" /db_xref="GeneID:7259737" CDS complement(2926915..2927859) /locus_tag="Dhaf_2730" /EC_number="2.5.1.8" /inference="protein motif:TFAM:TIGR00174" /note="KEGG: chy:CHY_1394 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase" /codon_start=1 /transl_table=11 /product="tRNA delta(2)-isopentenylpyrophosphate transferase" /protein_id="YP_002459192.1" /db_xref="GI:219668757" /db_xref="InterPro:IPR002627" /db_xref="GeneID:7259737" /translation="MKPLIIIVGPTAVGKTALGVALAQALQGEIISGDSVQVYRKLDI GSAKPTLAEQGNVPHYLLDALDPAEPFTVAQFQTLANQSIQNIQSRGKVPIVVGGTGL YIRSLIDPFQFAEHGSESIRSFWTAFLSEQGKEALHRELAKRDPLSAQRLHPNDTVRI IRALEMCQLTGKPFSEIRGNQDMNYPPLPPSLLYVGLTAPREIIYERINRRCEQMVAA GLIEETHNLIKEGYSPKLKPLQSIGYRHALLYLYGKVTLPEMMRIFQRDTRHFAKRQL TWFRRDPRVVWYDTYSGNLTNILESLIGTCSGMESRVE" gene complement(2927856..2928695) /locus_tag="Dhaf_2731" /db_xref="GeneID:7259738" CDS complement(2927856..2928695) /locus_tag="Dhaf_2731" /inference="protein motif:PFAM:PF04445" /note="PFAM: protein of unknown function DUF548; KEGG: dau:Daud_0555 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF548" /protein_id="YP_002459193.1" /db_xref="GI:219668758" /db_xref="InterPro:IPR007536" /db_xref="GeneID:7259738" /translation="MNHATVIVNITHPRDPDLQKKFLWFSEQPGITLLTSSPKSLAGA VEEPPYPILHITRKGIYLETGDHPLHFHPSMALLRVMQIIRGEGDRFLEAVDLRAGDV FLDATFGLGTDALVAAVQVGAQGKVIGIEHSPILAALVKDGLRTLAQGDCPRVQNPDK AKAWQVLAEAAQRIEVLWGDHLELLAGYPAAFADVVYFDPMFRHTREKSASIRPLHEV ANSCSLQGETVAEACRVAKRRVVLKERKASREFSRLGFEIQEGGNYSHVDYGIIHKEG AGS" gene complement(2928708..2930900) /locus_tag="Dhaf_2732" /db_xref="GeneID:7259739" CDS complement(2928708..2930900) /locus_tag="Dhaf_2732" /inference="protein motif:TFAM:TIGR00585" /note="TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cth:Cthe_0776 DNA mismatch repair protein MutL" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutL" /protein_id="YP_002459194.1" /db_xref="GI:219668759" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR013507" /db_xref="InterPro:IPR014762" /db_xref="InterPro:IPR014763" /db_xref="InterPro:IPR014790" /db_xref="GeneID:7259739" /translation="MTAKIHILDIQAANQIAAGEVVERPVSVVKELIENALDAQATQI EVIIEGSGVERIRVQDNGQGISAEDLPLTVLRHATSKIRTIDDLNRLRTLGFRGEALP SIASVSRLEIISRPPEEISGRVLRIQGGEQLEFSETGCPPGTTITVDDLFYNTPARRK FLKSKNTEFGQISDVIGRLSLARPDVSFTLKHPKVLVLQTPGKGNLLESIGAVLGQAT ARRLLPLSCSLGDWRLEGYISPPDLVRSTKQGETLIVNERIIRSNSISRAISEGYHTL IPAKLYPITILKLHIPPHEYDVNVHPTKMEIRFHKEKELMEFIAEGVRRTLLQARPIA PFVKVKNTPSPKESLPGADKVDRPVQGALNFAPKSPHSLSQGKTIPIPYKHSSYSPLG PANGLSASQRDRELNAGNEFKAGHKLNAHEFAETAKFLIKDLNPQERPPVNEQKLFLE SQEPFQVTPLKADRLEPDLSLESDAFLGANISGTDISGADTLGRADAPLAEEEVGAGS TAELELSVAEENHESNEITEITDKIKEQSPLLALRPIGQVFNTYIMATDGEQLVIFDQ HAAHERINYERLLAEHQNNPGNSQMLLIPLTMEFTPGEEEALLEHFLLLNEMGFILEH FGTRTYLLRGIPAYSGPYQGEQLLRDFLDQVMLNHIPPTMDKLLEEWIYMLACKASIK AKENLTLFEMEQLIVQLSKTLNPYTCPHGRPTMIQLTKEELEHRFYRS" gene complement(2930897..2932222) /locus_tag="Dhaf_2733" /db_xref="GeneID:7259740" CDS complement(2930897..2932222) /locus_tag="Dhaf_2733" /inference="protein motif:PFAM:PF00850" /note="PFAM: histone deacetylase superfamily; KEGG: drm:Dred_1885 histone deacetylase superfamily protein" /codon_start=1 /transl_table=11 /product="histone deacetylase superfamily" /protein_id="YP_002459195.1" /db_xref="GI:219668760" /db_xref="InterPro:IPR000286" /db_xref="GeneID:7259740" /translation="MKQTGLLFFPAFDWSLGDTHPEREERLLYTQEQLFEEGVMDLPQ IKHYAPGLASLKDVQRTQGIFPAPESHDLDAHLIAAGSSLVLGEAWAKKEIHNGFALV RPPGHHSGATVLGNRGFCTLNNEAILINHLRTFHGIKKVAIVDTDVHHGDGTQDIFYH DPNVLFVSIHQDGRTLYPGSGFIYEKGGPNAWETTLDIPLPPGTGDEDLHHVLENWVL PRIYDFQPDLIINSAGQDNHFTDPLASMSVTARGYGRITELLNPDLAVLEGGYSIEGA LPYVNLAIVLALAGEDYQGVIEPQKPRHPHSGSNAFRGFLKELKEQYRRAKPDWNIRA DSFLPEGKWVYIPHSVYYDTEGFQEGRKDWIRQCNHCGGTVLIESQHTVTGNTFALVR IPFAACEQCTQAGYDLWEHLIGRKTSVLLQDQQHNKVELWHLDKGVTHF" gene complement(2932219..2933898) /locus_tag="Dhaf_2734" /db_xref="GeneID:7259741" CDS complement(2932219..2933898) /locus_tag="Dhaf_2734" /inference="protein motif:PFAM:PF01968" /note="PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mba:Mbar_A2933 hydantoinase/oxoprolinase" /codon_start=1 /transl_table=11 /product="Hydantoinase/oxoprolinase" /protein_id="YP_002459196.1" /db_xref="GI:219668761" /db_xref="InterPro:IPR002821" /db_xref="InterPro:IPR008040" /db_xref="GeneID:7259741" /translation="MSYQVGIDVGGTFTDGVLIHKNNLIKKTKVPTQHDNLLDTLLHA LEHLDVFKQPVEQITVSTTLVTNAILENKLPPIELFLFPGSGMRLDALPWPVPYHALM GEIDYRGREVSPPDELEWRRLCNQLDFEAVPQAAIVSKFSHRNRILEDALAQFLSKKY PQLDIALGCEWGHANFYRRSLTTYLNTASKNLYKTFSSQLHQAVAKNGSQAGITVLKA DGGILPIDQLRPVESINSGPAASVIGALAQTDPQQSFVVVDIGGTTTDIGLILSGEPL LSARGAQIGPFLTLIPTLATRSIPVGGDSAVLPAPDVPEGFTLAPYRQGPAYCLGGGY PTPTDAMRYLKRVEHGNYARAEEGLASLLPPEARNPQAIQGLALKILEKFAEEVANAF SLLHKEWQEEPAYKVWEVLHPHSAKDFYIWVSGGSARGIAPSLEDKVHLPVRFTQHAD VSNAIGAALARPTLSCTLHLDTTIRSYRIEEFGEQREWLGSKRPHKEVQEFLQEIARE RARTIGLNLHELEFKTQPFDFFPVVKGYATVGQIIRGSVVVPPGVVGRLEV" gene complement(2934075..2936627) /locus_tag="Dhaf_2735" /db_xref="GeneID:7259742" CDS complement(2934075..2936627) /locus_tag="Dhaf_2735" /inference="protein motif:TFAM:TIGR01070" /note="This protein performs the mismatch recognition step during the DNA repair process" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutS" /protein_id="YP_002459197.1" /db_xref="GI:219668762" /db_xref="InterPro:IPR000432" /db_xref="InterPro:IPR005748" /db_xref="InterPro:IPR007695" /db_xref="InterPro:IPR007696" /db_xref="InterPro:IPR007860" /db_xref="InterPro:IPR007861" /db_xref="GeneID:7259742" /translation="MTTPMMQQYKSIKSQAPDAILFFRLGDFYEMFGEDARTAAPVLE IALTGRDSGGGERIPMCGVPHHAVDGYLLKLVSAGYKVALCEQVEDPQATKGIVRREI IRIISPGTMTDSLVEQANNFLAAVYHDQDWGLAFVDVSTGEFTVFQTESIDILTTELS RIRPSELLLPAELLKAKHWRPYYLTQREKKTYQHTLLEQRFTEQTELFQEFPTAMKAA NGLWQYILETSPGIDPSHILKINAYRPEHWMLLDPWTRRNLELTESIRGQGKKGTLLS VLDFTKTAFGGRLLRRWIEQPLLLKEEIEKRLDYVEALVEDSFLRGDLIQLFNKVFDL ERLMGKVSYGTANARDLLSLAQTLGVLPQLRALLAEGKSASLQAFIPALEGLDPLAVT LEQAINPEAPISLKDGNLLKAGYSEEIDELRSISSGGKAWVAKLESMEKDRTGIRSLK VGYNKVFGYYIEVTHANSHLIPAEYIRKQTLANAERFITPELKEYEQKILGAEEKVTQ LEYQLFLELRETVRGQAARILEAAHALAEIDVYASLAEAAVRHHYSRPVMKGEGGLTI IEGRHPVVESMLQDTSFVPNDTILTEDKHLALITGPNMAGKSTYMRQVALIVLMAQIG SFVPAQQATIPIADHIFTRVGASDDLASGQSTFMVEMYEVAHILRHVTPHSLIILDEV GRGTATYDGLSIAWAVAEYLAGQENKPKTLFATHYHELTDLEETHAGIFNLHVGVREH GEEIVFLHKIIPGRADRSYGIQVAKLAGLPANLLHRAKIILHELESSAKENRQEHLLN KEKATQLSLFEVQPLDPLLQEVSELSVEDLTPRQALDYLFDLKERIKTADSI" gene complement(2936713..2936841) /locus_tag="Dhaf_2736" /db_xref="GeneID:7259743" CDS complement(2936713..2936841) /locus_tag="Dhaf_2736" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459198.1" /db_xref="GI:219668763" /db_xref="GeneID:7259743" /translation="METGRFQPAIDNKCESSAFEERFGRRPDGAVGLSVSFVRAAY" gene complement(2937711..2938106) /locus_tag="Dhaf_2737" /db_xref="GeneID:7259744" CDS complement(2937711..2938106) /locus_tag="Dhaf_2737" /inference="protein motif:PFAM:PF07050" /note="PFAM: protein of unknown function DUF1333; KEGG: drm:Dred_3201 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1333" /protein_id="YP_002459199.1" /db_xref="GI:219668764" /db_xref="InterPro:IPR009763" /db_xref="GeneID:7259744" /translation="MTAEIMEKAEVLAAAIAKSVELQNLRSTEEAMMADEQAQQIIAD FQNEQQRVYELQAQGQELTDEVQQAIDAMEAKVEGYPPIAAYLQAQEQFTKMLDTING VLAQAIANDPNGGGCSCDTGCSGCGGSCS" gene complement(2938199..2939542) /locus_tag="Dhaf_2738" /db_xref="GeneID:7259745" CDS complement(2938199..2939542) /locus_tag="Dhaf_2738" /EC_number="1.3.1.74" /inference="protein motif:TFAM:TIGR01574" /note="catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)" /codon_start=1 /transl_table=11 /product="(dimethylallyl)adenosine tRNA methylthiotransferase" /protein_id="YP_002459200.1" /db_xref="GI:219668765" /db_xref="InterPro:IPR002792" /db_xref="InterPro:IPR005839" /db_xref="InterPro:IPR006463" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR013848" /db_xref="GeneID:7259745" /translation="MSITKVPKKVVTLAYGCQMSERDADTLTEISSQKGYVRSQELEQ ADLIIVNTCCVRESAENKILGKIGELKHLKEANPQLKIAISGCMVQQPGALERLRKRA PHVDIWAGTHNIHEFQRLLEEAEEKGKVAEVWEKPRETQESVLLAAKGKLKAYVNISY GCNNFCTYCIVPHVRGRERSRQPEEILAEIRALVETGCREVTLLGQNVNSYGQDLDRA YDFADLLKDVDSIDGLWRVRFMTSHPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEI LKGMNRKYTREYYLSRIAQIKAIIPQVSLTTDIIVGFPGETEEDFEQTLALIRQVKYS QAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQQLITVQNAQSLAWRQEMIGKTCEVLV EGPSKSNPDRLTGRTRGYELVVFPGEAQLIGTLVQVLIQDANSWTLFGECRADRH" gene 2939743..2939913 /locus_tag="Dhaf_2739" /db_xref="GeneID:7259746" CDS 2939743..2939913 /locus_tag="Dhaf_2739" /inference="protein motif:PFAM:PF07561" /note="PFAM: protein of unknown function DUF1540; KEGG: cbo:CBO0476 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1540" /protein_id="YP_002459201.1" /db_xref="GI:219668766" /db_xref="InterPro:IPR011437" /db_xref="GeneID:7259746" /translation="MANPKVLCNVVECKYNEAAKECHAGEIQVTKHHAEVRTTEATDC GTFELGDGREKV" gene complement(2939991..2940485) /locus_tag="Dhaf_2740" /db_xref="GeneID:7259747" CDS complement(2939991..2940485) /locus_tag="Dhaf_2740" /inference="protein motif:TFAM:TIGR00072" /note="TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: deb:DehaBAV1_0259 hydrogenase maturation protease" /codon_start=1 /transl_table=11 /product="hydrogenase maturation protease" /protein_id="YP_002459202.1" /db_xref="GI:219668767" /db_xref="InterPro:IPR000671" /db_xref="GeneID:7259747" /translation="MLQPKIMVMGVGNVLLSDEGLGVQFLTLLAQETLPDHVELLEGG TAGLELVHLIKEVDYLIIVDALNAKDEPGAIFRFEPEDIRVMPSQFEVSFHQVGILEV LAMANILGNAPKTLIFGVQPKSLEMGLELTPEIQAVLPRVKELVLEEIQNITQHGEFR QVNS" gene complement(2940561..2941184) /locus_tag="Dhaf_2741" /db_xref="GeneID:7259748" CDS complement(2940561..2941184) /locus_tag="Dhaf_2741" /inference="protein motif:TFAM:TIGR02125" /note="TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: chy:CHY_1544 [Ni/Fe] hydrogenase, b-type cytochrome subunit" /codon_start=1 /transl_table=11 /product="Ni/Fe-hydrogenase, b-type cytochrome subunit" /protein_id="YP_002459203.1" /db_xref="GI:219668768" /db_xref="InterPro:IPR000516" /db_xref="InterPro:IPR011577" /db_xref="GeneID:7259748" /translation="MANPADHPLSHRITHWINLINFIALIITGMMIHSPYQGMPMNLV RNIHFIFMFSLIFTGIVRFYISFFTKQRDYRKFLLDSYDIKTFIPQIKYYLFLQKDHP VNPNPYNPLQKLAYIGLPILAVLQILTGAILYLPMVFPGLEATLGGLAAIRGFHYVIT WLFIAIIAVHVYMVFTEAVDQFWYMFFGKTRKKDKVPPSDKATTARS" gene complement(2941256..2942812) /locus_tag="Dhaf_2742" /db_xref="GeneID:7259749" CDS complement(2941256..2942812) /locus_tag="Dhaf_2742" /EC_number="1.12.5.1" /inference="protein motif:PRIAM:1.12.5.1" /note="PFAM: nickel-dependent hydrogenase large subunit; KEGG: det:DET0110 [Ni/Fe] hydrogenase, group 1, large subunit, putative" /codon_start=1 /transl_table=11 /product="Hydrogen:quinone oxidoreductase" /protein_id="YP_002459204.1" /db_xref="GI:219668769" /db_xref="InterPro:IPR001501" /db_xref="GeneID:7259749" /translation="MGKVVIDPVTRIEGHLKVEVEVTNGVVTDAKSIGTMYRGFEPLL RGRDPRDATYVTERTCGVCAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHD HPLHFYHLSALDYLDITAVAKYQGQDPGLLRVKDKISKLIAAGDTAPLTPRYEPDAFC VNDPELVTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAGGVTMLPNIEVVEQF RSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGFGLDDEGKDFL FKQGIVLDGNLSNVMPVDQSKITEGVTHAWYKDNPKGDHPYDSDTVPDLAKKDAYSFV KAPRYDGKPIEVGPLARMLVMQPQGLMDIIAKYNIKPGAVARHAARAFETVILAKEMI NWVNQLEAEMGKGLRIHDTEHWNPPATGQGIGLTEVPRGALGHWIKIKDHVTENYQMV VPTTWNFSPKDAQGNYGPLEKALIGVPIPDENNPINIVRVIRSYDPCLACAIHLIDPQ TNEIRKFKVN" gene complement(2942816..2943904) /locus_tag="Dhaf_2743" /db_xref="GeneID:7259750" CDS complement(2942816..2943904) /locus_tag="Dhaf_2743" /EC_number="1.12.99.6" /inference="protein motif:TFAM:TIGR00391" /note="KEGG: chy:CHY_1546 [Ni/Fe] hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit" /codon_start=1 /transl_table=11 /product="hydrogenase (NiFe) small subunit HydA" /protein_id="YP_002459205.1" /db_xref="GI:219668770" /db_xref="InterPro:IPR001821" /db_xref="InterPro:IPR006137" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259750" /translation="MGKSDFLQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEA AMEKPPVIWLHGMECTGCSESLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAY QDTLDEKFVLVVEGSVPASEATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDGA GIPGACDIKPIGVRELLQKHNIATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQ ARPLIYYGKLLHDNCPRRGQFEAGNFLSDWNDPAQKDYCLLLKGCKGPKTYTDCAQVW WNDNANFCINAGSPCSGCSESGFYGQFSPLYAKQENFSLPGLGQIHADTVGKVVGGAT VVGLGAHLIATVASGRLKNNDSEQKKED" repeat_region complement(2944018..2945611) /note="ISDha2" gene complement(2944188..2945432) /locus_tag="Dhaf_2744" /db_xref="GeneID:7259751" CDS complement(2944188..2945432) /locus_tag="Dhaf_2744" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: bha:BH0691 transposase (15)" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002459206.1" /db_xref="GI:219668771" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7259751" /translation="MQDKDTTHSTFMQAFQPLFSKDLWKDIHQQVPDLDRRTQKLKTN QLTLLISNAQLQEYRALRKISTSVLSDNLGQAIGLKSISHSQISRRLKTLPTKVSEML FRRTLHKVAQKQGYGKIRQQLGKLYMIDASTISLCLSRYPWAVFRKSKAGVKIHLRLS FDGIALPDEVVITPAKIADRKKLDELIVEDKDALNIFDRGYVDYELFDDYCEKGIRFV TRLKNNAIMEFTGVERPVEEDGIIEEDVDIILGTGSRKMKHTLREVTIDDTINEPFTI LTNDFELSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVTNQILLALMTYC SLMLLKLEVEYPRDLLTLQRLLITCLFESYEEFLEKLRRRRRKAAKRINHEKIYQMTE HYIITEEDTGWLNDLIYDPVIL" gene complement(2945743..2947014) /locus_tag="Dhaf_2745" /db_xref="GeneID:7259752" CDS complement(2945743..2947014) /locus_tag="Dhaf_2745" /EC_number="3.4.16.4" /inference="protein motif:PRIAM:3.4.16.4" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: chy:CHY_2101 D-alanyl-D-alanine carboxypeptidase" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_002459207.1" /db_xref="GI:219668772" /db_xref="InterPro:IPR001967" /db_xref="GeneID:7259752" /translation="MKRIIALITLLLYFFIFVPALTAAPETQTAAPPEISGEAAYLID VQSGQTLYSKNGDQLMAPASTTKIMTGLLGIELGNPEDIVTASETMLDYNTVYGTRIY LEPGEQLSLEDMLYALLLNSANDAAVAIAEHISGNTAAFVSLMNQRAADLGLKNTTFK NPSGLNEEGHLITAHDLARIAQAAYANPVFRDYIKTKSHVIPRAKENVPIEMINENKL LWRDDTITGMKTGYTSVAQNCLVASASRDGRDVIGVILKSPGREIYTDMQALLDYGFE QFENTLYKGVGDSLGQLEIQGQPVNLLIDQALWITQKKDNTLPQPRINILPIDGELAE VAEGQVLTRLEVWEDEECLRVVPLAADRNIITEAAVEKKSYALFTGLGLMVSGVILYG AVQQRKHAERRRERAKLRQDRIQDPNRCQRR" sig_peptide complement(2945743..2945814) /locus_tag="Dhaf_2745" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 24" gene complement(2947029..2947874) /locus_tag="Dhaf_2746" /db_xref="GeneID:7259753" CDS complement(2947029..2947874) /locus_tag="Dhaf_2746" /inference="protein motif:TFAM:TIGR00762" /note="TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: aoe:Clos_0952 DegV family protein" /codon_start=1 /transl_table=11 /product="degV family protein" /protein_id="YP_002459208.1" /db_xref="GI:219668773" /db_xref="InterPro:IPR003797" /db_xref="GeneID:7259753" /translation="MSYIVLVDSSCDLPSDLSQKEGIVVVPMPVSIEGKTYSEGVDIF PAGFYPRFSEFKELPKTSQPNPGTLKDAYEAILAQGHEVVAIHLSSGLSSTFSTAQMV REMCSQPEKIHVIDSLGASLGYGLLALAANRLVKEANSWEEAEAEIFQVRRQMRYVFT PDTLDYLVKGGRVSKTAGFIGGLLDVKPILNITAEGRIEPLTKVRSRKAALRKLVELI QEEIRHPEEQEIGISQAACPEEARALAEEIKMKVPVKDVIISDIGCVVGSHTGPGTIA LFYQR" gene complement(2948034..2948171) /locus_tag="Dhaf_2747" /db_xref="GeneID:7259754" CDS complement(2948034..2948171) /locus_tag="Dhaf_2747" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459209.1" /db_xref="GI:219668774" /db_xref="GeneID:7259754" /translation="MFLVTWIEAEEINYRLVKKHELSQFISTHLITPLDNHLMVQELI V" gene complement(2948370..2948819) /locus_tag="Dhaf_2748" /db_xref="GeneID:7259755" CDS complement(2948370..2948819) /locus_tag="Dhaf_2748" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: amt:Amet_4064 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_002459210.1" /db_xref="GI:219668775" /db_xref="InterPro:IPR006683" /db_xref="InterPro:IPR006684" /db_xref="InterPro:IPR008272" /db_xref="GeneID:7259755" /translation="MFLTHQTPVRVRYAETDQMGVVYHSNYFIWFEIGRAELLRNAGL AYTTFEEQGLAVAVVDAGCRYRRPALYDDQLVIETSLESFSSRKLTFTYKVLRDDTLL AEGTTIHVFVDRTGRSTDARNYPIWKEFEEIVNENKESEKAEAGAQV" gene complement(2949054..2949812) /locus_tag="Dhaf_2749" /db_xref="GeneID:7259756" CDS complement(2949054..2949812) /locus_tag="Dhaf_2749" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aoe:Clos_2322 methyltransferase type 12" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002459211.1" /db_xref="GI:219668776" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7259756" /translation="MLSYYGRLSSEVYDIDKPIDHSFRDVEFYIDRLNLCRGHILEPA TGTGRVLVPLLEKGFKVDGFDSSKDMLNICRDNCRKKGLNPKLFEAKMESFIQDTRYD AIIVPAGTFLLLHQRADSIRALQNFHKHLCTGGRLIIDILMQTDFSTGTVSTRTWVCS NGDLITLESKVVEVDYINQYTVSHNRYEKWREGVLIQTELERFPLRWYGLEEFKLILE STGFKDIVISSDYKFGQYPSNVKDVITFEAVAIN" gene complement(2949851..2952258) /locus_tag="Dhaf_2750" /pseudo /db_xref="GeneID:7259757" repeat_region complement(2950165..2951673) /note="ISDha5" gene complement(2950166..2951518) /locus_tag="Dhaf_2751" /db_xref="GeneID:7259758" CDS complement(2950166..2951518) /locus_tag="Dhaf_2751" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: pth:PTH_2669 hypothetical protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002459212.1" /db_xref="GI:219668777" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7259758" /translation="MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVV FQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVGRF EKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSF APLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSPKPDTVVQMLERALKAGFS ADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPK AEILGSVRVHTPSGLALKVVFVQNRNNRREWLAILTTDLSLETTEVVRIYGMRWSIET FFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFA DEVMDLDLKTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES" gene complement(2952443..2953891) /locus_tag="Dhaf_2752" /db_xref="GeneID:7259759" CDS complement(2952443..2953891) /locus_tag="Dhaf_2752" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidoglycan-binding LysM; G5 domain protein; Peptidase M23; KEGG: mta:Moth_2422 peptidase M23B" /codon_start=1 /transl_table=11 /product="Peptidase M23" /protein_id="YP_002459213.1" /db_xref="GI:219668778" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR011098" /db_xref="InterPro:IPR016047" /db_xref="GeneID:7259759" /translation="MSNWKGGLDGISQSIKENLTKVLGRFSESKVAWEFPKIVLGVMG LMVVLGGGLYYSQTTTAAALMLNGQEIGYVASPDAGKQLVDSILVSQGDSSDLVAKTH DQIEFQDTRIRKGTLQENSVTEAKLNNLISTYFEGVQFSIEDAPIAILPSEDDFQKIL QAYQEIYAKPSENNTITSVEFKELISSQPVEVQQAEFSSPEMVLETLRKGHEARTEYV VQPNDSWWLIARKNDMLTKEVLAGNPGMDEDKTLQVGEKINLVKVTPYLTVVSKGIYT GTETIPFDVESKTDYSLPSGSSVVRQEGSDGSKKVTYSYVQENGKNIEKVVLEEKIIQ QPVTQVIAKGPTYASANVALSRGSGKVSGLGWPLRGGLNSYYGYRWGSFHTGLDIGGD TGQPFVAAAGGTVSSVGWSGGYGNMILIDHGNGVATRYAHASKVSVSNGQQISKGESI GLVGSTGRSTGPHLHFEVIINGDTVNPLNYLP" gene 2953984..2954157 /locus_tag="Dhaf_2753" /db_xref="GeneID:7259760" CDS 2953984..2954157 /locus_tag="Dhaf_2753" /inference="protein motif:PFAM:PF05979" /note="PFAM: protein of unknown function DUF896; KEGG: drm:Dred_0755 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF896" /protein_id="YP_002459214.1" /db_xref="GI:219668779" /db_xref="InterPro:IPR009242" /db_xref="GeneID:7259760" /translation="MEINTLIERINELSRKQRTIGLEEWEKAEQEALRQEYLGFIRGQ VIDSLSQVKVEKS" gene 2954257..2954520 /locus_tag="Dhaf_2754" /db_xref="GeneID:7259761" CDS 2954257..2954520 /locus_tag="Dhaf_2754" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459215.1" /db_xref="GI:219668780" /db_xref="GeneID:7259761" /translation="MPERVMKYGGVKFRNLVPPVKINRFVNQLAPDQKDSLFEIAGEL SDAGMIEILNERTQSTIDQDTVDTQTPNAGVNTEEVQESNRHL" gene complement(2954671..2956404) /locus_tag="Dhaf_2755" /db_xref="GeneID:7259762" CDS complement(2954671..2956404) /locus_tag="Dhaf_2755" /inference="protein motif:TFAM:TIGR01064" /note="TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein mobile region; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: tte:TTE1815 pyruvate kinase" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="YP_002459216.1" /db_xref="GI:219668781" /db_xref="InterPro:IPR001697" /db_xref="InterPro:IPR008279" /db_xref="InterPro:IPR015793" /db_xref="InterPro:IPR015794" /db_xref="GeneID:7259762" /translation="MRRTKIVCTIGPSSESNEKIRQLLKAGMNVARLNFSHGTHGEHG KRIRTLREEAQKLGVHLGVLLDTKGPEIRTGTVPEEGVQLNSGDTFILDTDLSTLGSA ERVGITYLQLWQEVHQGTHILLDDGLIDLEVIASEEGKIITKIQNGGVLKSKKGVNVP GVPIQLPAITEKDRDDIIFGLREGIDFIAASFARKAADILAVRRLVEEEGANVKIIAK IENREGIEHLDEILEVADGLMVARGDLGVEVPVEEVPIHQKDMIEKCHHLGKPVIVAT QMLDSMIRNPRPTRAEASDVANAILDGTDAIMLSGETAAGQYPVEAVEMMNKIALQIE KHYEPRKIYDPHINIAEAISHASYTVARDLEAAAILTPTHSGLTARMISKYRPTSLII AATPFVHVARQLSLTWGIYPLLIPESLGTDQLLSVSVNEAISHHLIKTGDVVVITAGV PVGKVGTTNIIKVQVIGDVIAKGTGIGRKAYSGTARIATSAALELFQKGDILVAPYTD KELIPLIAKAGAILVEEGGLTSHGAIAALNYGIPAIVGAADVLMKVKDGQVLTVDALA GVVYEGTVSII" gene complement(2956506..2957516) /locus_tag="Dhaf_2756" /db_xref="GeneID:7259763" CDS complement(2956506..2957516) /locus_tag="Dhaf_2756" /EC_number="1.2.1.12" /inference="protein motif:TFAM:TIGR01534" /note="KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase, type I" /protein_id="YP_002459217.1" /db_xref="GI:219668782" /db_xref="InterPro:IPR000173" /db_xref="InterPro:IPR006424" /db_xref="GeneID:7259763" /translation="MSVRIAINGFGRIGRLSMRAILERKSSLDIVAVNDLGSPDLLGH LFKYDSIHDILPYDVEVKENTLEVLDQKVAFLAEKDPGKLPWRELGVDLVIEATGRFT KREQAALHLQAGAKKVIISAPGKHEDITIVMGVNEHLYNPAEHHILSNASCTTNGLAP LAKVLLEEFGIEQGMMTTTHSVTNDQRILDLEHKDWRRARAAYESMIPTTTGATKAVE LVLPDLKGKLKGLAVRVPTPNVSLIDFVANLSRSTTKEEVNQKLREAAEGSLKGYLAY SELPLVSHDFNGNPHSAIVDGLSTLMLGERMVKVLAWYDNEWGYSNRIVDLVEYIAGQ GL" gene complement(2957703..2958821) /locus_tag="Dhaf_2757" /db_xref="GeneID:7259764" CDS complement(2957703..2958821) /locus_tag="Dhaf_2757" /inference="similar to AA sequence:KEGG:Moth_1766" /note="KEGG: mta:Moth_1766 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459218.1" /db_xref="GI:219668783" /db_xref="GeneID:7259764" /translation="MERGVLMAKNPVIRKMFPGGVTYLGFYSYYHYLADATARHIYVI KGGPGVGKSTFMKKIGEEMLKAGFDLEYHCCSSDNQSIDGIVIPELGIALLDGTAPHV VDPKIPGAVDEIINLGEYWDESLIRPYKKEIIVCSQEISRCFESAYFALKDAKNAMDE WEFYIKPDQDWQTINQIYLKTKQELFKTPSSKGTGKTRHLFAWAHTPQGRTQHIDSLI QGMDSLYSLKGQAGTGKSTLLARLAEEAKVLNYDLEIYHNALEPDKIDLLLIPELHTA LVISSEHYPYHPEFSGTLHSLDLDSGLHRAGLNGTLDFIDSCRNRVEESILRAQSHSQ RAKTLHDQLEEYYIPAMDFEAIDEKRRSILKSIMENYS" gene complement(2959157..2959555) /locus_tag="Dhaf_2758" /db_xref="GeneID:7259765" CDS complement(2959157..2959555) /locus_tag="Dhaf_2758" /inference="protein motif:PFAM:PF02579" /note="PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: drm:Dred_1341 dinitrogenase iron-molybdenum cofactor biosynthesis" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_002459219.1" /db_xref="GI:219668784" /db_xref="InterPro:IPR003731" /db_xref="GeneID:7259765" /translation="MNKKIAIPTEGEKVNAHFGRSQAFTLFLIEEGKVSGQERIDTAD FQHQHEGIAQLLKSKGVETVICGGIGPGAITGLENAGIEVLRGANGPALEAAQAYAAG TFVSTNAVCNHSHDHDHHGHGHDHDHHHHH" gene 2959723..2960601 /locus_tag="Dhaf_2759" /db_xref="GeneID:7259766" CDS 2959723..2960601 /locus_tag="Dhaf_2759" /inference="protein motif:PFAM:PF00004" /note="PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mab:MAB_1619 hypothetical protein" /codon_start=1 /transl_table=11 /product="AAA ATPase central domain protein" /protein_id="YP_002459220.1" /db_xref="GI:219668785" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7259766" /translation="MWESPRELMNALEQEGYILDQDKGTTLFLALALHKPCLIEGPAG VGKTQLALALARSTGRRLIRLQCYEGLDLNKALYEWDYAKQLLRLQVGISGWEEIKEN IYGPEFLLARPLLQTVLAEEPVILLIDELDKSDEEFESFLLELLAEFQVTIPEVGTFK AQNSPIVLLTSNNTRDLSEALRRRCVHLLLAYPDVEQEMRILAQRCPEVAAALIQDVC EFVAKIRKIPLRKLPSVSESMDFARALHILRQDSLDMQQLEGTLSILLKYPSDLAKLE DRLKAWQQEAARRTQA" gene 2960616..2962022 /locus_tag="Dhaf_2760" /db_xref="GeneID:7259767" CDS 2960616..2962022 /locus_tag="Dhaf_2760" /inference="protein motif:PFAM:PF05762" /note="PFAM: VWA containing CoxE family protein; KEGG: pat:Patl_0103 VWA containing CoxE-like" /codon_start=1 /transl_table=11 /product="VWA containing CoxE family protein" /protein_id="YP_002459221.1" /db_xref="GI:219668786" /db_xref="InterPro:IPR008912" /db_xref="GeneID:7259767" /translation="MKELTINGWQLLKLISALRSVGIHITLDEIQDALKALTRYPDLA PKLVLKSLFIHRQEDQQLFDMVYELLAPAPSSPDSEPTAPGQCTGSDQGEAGDGSHQG IGTGQGGITLHLKSAGESSPARSISFQMPDLHYLMGLKGFPSTIEEEETKEFDLGKQA RFILGQSGFLTWSNSLELARERGEVPEDQWQKFEAYQDFWQRRIHQVLWQERLSEQNR WDSFREINWRFKPLNSFTAAEEGMVQQALRQMGNQLAVHRGLRKKKASRGRLRLSSLL QEMVRGNGAVFRFEYETPALKHPELIVLCDVSNSVAPFSQFLLYLCQRMKSRFRKVRL YLFIDGIWDITHEEWLASGDSMAEIRSWGRKHSSGFTDYGKVFKDFARDVLPSLSTRG TLLIMGDGRNNFRPAQADYLQEIQGKIKHVFWLNPLAEKDWTLPDNLMDEYRNYCTRV FPCRNLSDLWQISKKVFS" gene complement(2962263..2963285) /locus_tag="Dhaf_2761" /db_xref="GeneID:7259768" CDS complement(2962263..2963285) /locus_tag="Dhaf_2761" /inference="protein motif:PFAM:PF00994" /note="PFAM: molybdopterin binding domain; KEGG: cpe:CPE1791 molybdopterin biosynthesis protein" /codon_start=1 /transl_table=11 /product="molybdopterin binding domain protein" /protein_id="YP_002459222.1" /db_xref="GI:219668787" /db_xref="InterPro:IPR001453" /db_xref="GeneID:7259768" /translation="MQKIKVQDAIGSVLMHDLTQIIPGKTKDARFRKGHVIKEEDIPT LLSMGKEHIFVWDQTPGLIHEDEAAERLAKAVAGPGLSFSETKEGKVNLIAEEDGLIY ASEEGIYALNSLEYIILATLHNHRPVKKGQKIAGTRVVPLMIDENVVIEAEGIARRFE EPILQIRPLQSKKVGVVTTGSEVYHGRIQDKFGPVLQRKVAEWGSVLLGQTFADDDVE MIQERIREHIEQGAEMVLVTGGMSVDPDDLTPTAIKGLGGELITYGTPVLPGAMLLLA YLDDIPILGLPGCVMYSRKTVFDLVATRILAGERLTRLEIAKYGHGGLCLECPECTYP HCPFGK" gene 2963567..2964271 /locus_tag="Dhaf_2762" /db_xref="GeneID:7259769" CDS 2963567..2964271 /locus_tag="Dhaf_2762" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: hmo:HM1_1063 Crp/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002459223.1" /db_xref="GI:219668788" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7259769" /translation="MASNITGFELFKSNPNWQELPDSFWEFCSAHGRVRHYAAKQFLF FFGEESNSVYFLLKGRIQILLMSEFTEKIFRILQPPAFFPEVVLDSKTYPYAALTAEA SDVFVLDRKALVQYFKENPSTLLPFYQNMALDLRRAYRQIKNIALGDARSRLGAKLFA LAHVHGQETPEGILITVPLTATELAGMCSLARESVSRILSELRDLGILKMEKKQITIS DLEQLRSWIHERQNSL" gene complement(2964276..2964872) /locus_tag="Dhaf_2763" /db_xref="GeneID:7259770" CDS complement(2964276..2964872) /locus_tag="Dhaf_2763" /inference="protein motif:PFAM:PF01077" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dol:Dole_0748 proto-chlorophyllide reductase 57 kD subunit" /codon_start=1 /transl_table=11 /product="nitrite and sulphite reductase 4Fe-4S region" /protein_id="YP_002459224.1" /db_xref="GI:219668789" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006067" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259770" /translation="MIDHPGFVLEHCRRNCGKSAQDWSLLHQQLEQMLKNLDLLSHLK QKFPVIHYHHLPKISIAGCPNACSQPQIKDIGLTGFLMPKLTEAGCTGCQACCRSCQE GALSWQGELEFEPTKCIGCGDCVRSCPTDKILPGESGWTLHLGGRLGRHPQLARLSRE KLQTSELPRIIGRILEDYIDNGLPQERLTHFLDRRPHL" gene complement(2965017..2965934) /locus_tag="Dhaf_2764" /db_xref="GeneID:7259771" CDS complement(2965017..2965934) /locus_tag="Dhaf_2764" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbe:Cbei_3435 protein of unknown function DUF6, transmembrane" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_002459225.1" /db_xref="GI:219668790" /db_xref="InterPro:IPR000620" /db_xref="GeneID:7259771" /translation="MDTRKELQGHLLAFMTIFIWGTTFISTKLLLESITPVEILFLRF AIGFLILLLAYPHRLRIRERKQDLYFAAAGLCGVTLYFLLENIALTYTFASNVGVIVA ISPFFTALFAHLFLDTEKLRVRFFIGFSVAVVGIILISFNGSNNLQLNPLGDILAVLA AVVWAAYSVLTKKISGFHYNTIQATRRIFFYGLVFMIPALCILGFNPDITELTRPNNL FNILFLGLGASALCFVTWNSAVKLLGAVKTSVYIYLVPVITVITAVIVLREEITGVSV LGIVLTLTGLLISERKGRHIPQQTEASKA" gene complement(2965960..2966785) /locus_tag="Dhaf_2765" /pseudo /db_xref="GeneID:7259772" gene complement(2967012..2968022) /locus_tag="Dhaf_2766" /db_xref="GeneID:7259773" CDS complement(2967012..2968022) /locus_tag="Dhaf_2766" /inference="protein motif:PFAM:PF05343" /note="PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: tpd:Teth39_1848 peptidase M42 family protein" /codon_start=1 /transl_table=11 /product="peptidase M42 family protein" /protein_id="YP_002459226.1" /db_xref="GI:219668791" /db_xref="InterPro:IPR001948" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR008007" /db_xref="GeneID:7259773" /translation="MPYDHKPLDYTLLERLTQCFGPSGVEGNVNSLIAEEIRPYCDEI NTDALGNLMAVRRGTGKKIMIAAHADEIGVMITHIDEKGFLRFAPLGGVSIQGLPHRR VQFQNGLMGTIGVEKLEKPTDLKLNKLYIDIGATSLEESKAKVQVGESAVFVGSFHKQ AKRLTAKALDDRVGCFIAIEVLKRLQTQHEVYFVFTVQEEVGVRGAQTAAFALEPDLA LAVDVTGTGDTPKSHPMDVKLGQGVAIKVFDRSMITHPKIKSWMAQTAEQHHIPYQWE VLEFGGTDSGAIHLTKGGIPSGVVSIPTRYIHSPSEMVDQGDIEGAAQLLLALLEGPA EL" gene complement(2968046..2969065) /locus_tag="Dhaf_2767" /db_xref="GeneID:7259774" CDS complement(2968046..2969065) /locus_tag="Dhaf_2767" /inference="protein motif:PFAM:PF05343" /note="PFAM: peptidase M42 family protein; KEGG: tpd:Teth39_1849 peptidase M42 family protein" /codon_start=1 /transl_table=11 /product="peptidase M42 family protein" /protein_id="YP_002459227.1" /db_xref="GI:219668792" /db_xref="InterPro:IPR008007" /db_xref="GeneID:7259774" /translation="MLLKILSELNGTSGAEKEIRQALAAELEPCVHSLSTDKIGNLIV QKNPPLSAPKVMIAAHMDEVALMITAITADGFLKFQPVGGIDPRILVSKPLKINALTG VIGAKAIHLQKPKEREQALTIEQLYIDIGAKSKEEAEKHVKIGDYAYFFTEMEKLGQG YLKGKAFDDRVGCAILAQLLKRDYALNLIGAFTVQEEVGLRGATVAAYHVQPDFAIVL EGTVSAQMMEVEEGEWVTEPGKGPALSMLDNATLYQPQLLRQVIDLAEKMGIPYQLRR GHSGGNDAGRIHLSREGIPTIALSVPCRYIHSTASVLAEKDIEHTLNLVDGILKAIPH EFSFR" gene complement(2969056..2970117) /locus_tag="Dhaf_2768" /db_xref="GeneID:7259775" CDS complement(2969056..2970117) /locus_tag="Dhaf_2768" /inference="protein motif:PFAM:PF05343" /note="PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: tex:Teth514_0376 peptidase M42 family protein" /codon_start=1 /transl_table=11 /product="peptidase M42 family protein" /protein_id="YP_002459228.1" /db_xref="GI:219668793" /db_xref="InterPro:IPR001948" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR008007" /db_xref="GeneID:7259775" /translation="MNNAQLSSAKEFLKQLSENSGVSGYEETLAPLVLAAFTPLADQV GQDALGNIYAHKKGTQGRYKIMLAAHMDEIGLMVKGIEPSGFLRFTPVGGVDQRTLLS QEVIVHGRKPVLGVIGSTPPHLMTAGEEKAVKAEQMGIDVGMTFEQIKEVIQVGDIIT LRRNTLELLNHVLAGKSFDDRAGVVVMKICLEELQRLQHAHDVIAVSTTQEEVGYRGA TTSAYSLNPDLAIAIDVTHASTPDTKGQVEKELGKGPAIALGPNIHPFVYEELVKAAK EARIPYQNHPVPGRSGTDAWAIQVTQAGVPTGLVSIPLRYMHTSVETIDMQDVILTGK LLAYFIAGLPEDLEGRVCY" gene complement(2970180..2970353) /locus_tag="Dhaf_2769" /db_xref="GeneID:7259776" CDS complement(2970180..2970353) /locus_tag="Dhaf_2769" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459229.1" /db_xref="GI:219668794" /db_xref="GeneID:7259776" /translation="METGRFQPAIEQERFGRAPDGAEGLSVSFVRAAYGATGVNQNPG DLAFMLSPAGKQQ" gene complement(2970880..2972283) /locus_tag="Dhaf_2770" /db_xref="GeneID:7259777" CDS complement(2970880..2972283) /locus_tag="Dhaf_2770" /inference="protein motif:TFAM:TIGR01887" /note="TIGRFAM: dipeptidase; PFAM: peptidase M20; KEGG: ctc:CTC01945 dipeptidase PepV" /codon_start=1 /transl_table=11 /product="dipeptidase" /protein_id="YP_002459230.1" /db_xref="GI:219668795" /db_xref="InterPro:IPR001261" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010964" /db_xref="GeneID:7259777" /translation="MHDENLNQHIDGLRDELIKAVQDCVQFKSVKDMDHVSPGAPFGP GIRDCLEWTLSLGEQLGFEVKNIDGYAGQIEMGSGELLGILGHLDVVPEGDGWSVPPY SGTIKEGRIYGRGALDDKGPTLAALFAMKALKDGNIPLKKKIRLILGTDEESGWEDMD YYKTKEDIPVLGFAPDAEFPLIHAEKGIFHLELSKQFNPLPHLIRIQGGERANVVPDS CQVVLKGFTREELARKLSQYTFPEGVTGDLESLSGAEEEGLVLIFKGVGAHGSLPQKG KNAVLYALQFLAGLDLSQEEAELITWLNNRPGTGFFGEGFNIAFADEPSGKLSLNLGI MDLNPQGLRFVIDIRYPVTFQGDQILKPVEACGQEIGLEMKVLTHQKAHHVPKDSPLV TSLLKAYSDVTGLEGYAFAIGGGTYAKVLPQGVAFGPLLPGEPEVIHCPDEYMAIDSL ILACKVYAQAILNLAGE" gene complement(2972367..2974385) /locus_tag="Dhaf_2771" /db_xref="GeneID:7259778" CDS complement(2972367..2974385) /locus_tag="Dhaf_2771" /EC_number="2.4.1.129" /inference="protein motif:PRIAM:2.4.1.129" /note="PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: hmo:HM1_2053 stage V sporulation protein D" /codon_start=1 /transl_table=11 /product="Peptidoglycan glycosyltransferase" /protein_id="YP_002459231.1" /db_xref="GI:219668796" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR005311" /db_xref="InterPro:IPR005543" /db_xref="GeneID:7259778" /translation="MKRSYFAREKVLYLVLVLMATVIVGRLFMLQVIDAAELKAKGIE RRTSSASLLPERGKILDAQGNVLAQSIPVKEVYGDPRAINELIESKQTKWTKEEIAAK LSEILSIEQEVILEKLNRDLAWVNIANHVELEKADQIKALKLPGIGFSDQQKRVYPMD RLAASVLGIVTLDGNGAEGLEAFYNKELYGTPGYSSQQSLLNPSQLNEPAMRGADLRL TLDATIQYLIEQQLDQLLETTQGKHIAILAMDPMTGRILGMGSRPTYNPNDYSTTDPE ERRNLTISMSYEPGSTFKIITGAAALEEGTVQPDDLFEDPGYIQIGPRYITNWDSDFR PHGKVTFTEGMMLSSNVVLSQVGMNLGKETFYTYLKAFGFGSRTGIDIIGEDSALLVP QDQARDIDMATMSFGQANLVTPLQLLTAISSVANGGTLYKPYIVDKITFPDGTVQEKK PEPVRQVISKATAEQMTAILEAVVNEGTGAAAKIPGIRVAGKTGTAQKVDPDTKGYSK TDFIASFAAYAPADNPKIALLILIDTPQGESHQGGTLAGPVAKTIIEGTLQYYGIPVS GETPSEVSEIPETSFERPAPGEVVPERTPLKGESVVPDLTGLTMRQAGEKLAAAELHF HFSGTGLVRGQNPQPGKVVNAGTVINVEFATLEEILQQGSEAEPPPNP" gene complement(2974586..2975569) /locus_tag="Dhaf_2772" /db_xref="GeneID:7259779" CDS complement(2974586..2975569) /locus_tag="Dhaf_2772" /inference="protein motif:PFAM:PF01694" /note="PFAM: Rhomboid family protein; KEGG: bpu:BPUM_2217 peptidase" /codon_start=1 /transl_table=11 /product="Rhomboid family protein" /protein_id="YP_002459232.1" /db_xref="GI:219668797" /db_xref="InterPro:IPR002610" /db_xref="GeneID:7259779" /translation="MVKEGLVILERIIQGLHEDLWSIEKDGNQWIMARKGENGLLFSF LRKGAPLEGPQGSFAADASIKHWEAIILCPEGLSSQDLKQPALKSIQAWFIDLQTGSI FAAPATAKREHLNRVLSYLEVNSSSSASVYETSESTPSARSGQGPPYLTYTLIAINLI VFGLMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLAFNLYALWA LGAIAEELLGRVRYITVYILSGILGSVASFFFTDAISAGASGAIFGILGALVVYSRRK PFLWKSGFGKSLAVVVLINLGLGFFQTGIDVYAHLGGLVTGMLFTWLISMK" gene complement(2975698..2975976) /locus_tag="Dhaf_2773" /db_xref="GeneID:7259780" CDS complement(2975698..2975976) /locus_tag="Dhaf_2773" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0061 ferredoxin" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459233.1" /db_xref="GI:219668798" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259780" /translation="MKLDDKLYLVRFNTDKLNHIKISNGELCLKCKDKVCTFICPAHV YDWDEEENRIAVGYEGCLECGTCRVACPHGNIQWDYPRGGFGVSWKNG" gene complement(2975973..2977265) /locus_tag="Dhaf_2774" /db_xref="GeneID:7259781" CDS complement(2975973..2977265) /locus_tag="Dhaf_2774" /EC_number="1.5.5.1" /inference="protein motif:PRIAM:1.5.5.1" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mta:Moth_0060 FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="Electron-transferring-flavoprotein dehydrogenase" /protein_id="YP_002459234.1" /db_xref="GI:219668799" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7259781" /translation="MEKFDVIVVGGGPAGLSAAISAAQAGMKTAVIERGDYPGTKNVM GGVLYTEATNEVVPDFWKEAPLERPVIEQRYAFLSKDEILSAGYRDPAWGQPPYNAHT VLRVKFDRWLADQAVKAGVMIITETLVEDLLYHGDDVVGVRTGRAEGDLGAQVVILAE GANNFLACKAGLAKPLRPENMAVVVKEIIELPPEKIEDRFCLEPHEGATIELFGDSTD GMMGTSFIYTNKNSLSIGVGAMVHSMSEKGWSPNDLLENLKAKPYVKRLLQGGETKEY LAHLIPEGGYNAIPKLYRQGVMVVGDTAMFVNGLNREGSNLAMISGKIAGKVAAEAIQ SGDLSAHGMSVYESRLRDSFVIKDLYKFRKLMPFIESNPHLLGQYPEILNQAARMYFT ADGTPKAQVFSNIMDMMFKKRTKTGLVKDMFNAWRALK" sig_peptide complement(2975973..2976050) /locus_tag="Dhaf_2774" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.916) with cleavage site probability 0.771 at residue 26" gene complement(2977277..2978563) /locus_tag="Dhaf_2775" /db_xref="GeneID:7259782" CDS complement(2977277..2978563) /locus_tag="Dhaf_2775" /inference="protein motif:PFAM:PF01012" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mta:Moth_0059 electron transfer flavoprotein alpha and beta-subunits" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_002459235.1" /db_xref="GI:219668800" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259782" /translation="MAVIIGPGCISCGLCVGECPSEALELGDSGVVVDAGKCTECGDC VSVCPSNILSLPEGAGKSAEEPKQTSTEPSPAAPGAKVEKKAAPVPGGDVWSGVWVVI EYNRGEVAPVSWELLGEGRKLANDIGCELAGVLVGHDVEAVIPEAFAHGAEKVYVVDD PVLKDYRTQPYAEAVADLVRRYQPEIILMGATAMGRDMFPVVATKMQTGLTADCTVLS IDPDSKLLLQTRPAFGGNIMATILCKTRRPQMATVRPRVMAMPERVEGRTGEVVREEL GMTEDQVLTKIVDFIKGDAKSIFLDKAEILVAVGLGLGSKKNMVLAEELAEVLGATLA GTRGAVEAGWITHDRQVGQTGVTVRPKLYIAIGISGAIQHLVGMETSDSIIAINNDPD AAIFRVATYGIVGDLNEVVPALTAEFKKRLQHGLAK" gene complement(2978563..2979396) /locus_tag="Dhaf_2776" /db_xref="GeneID:7259783" CDS complement(2978563..2979396) /locus_tag="Dhaf_2776" /inference="protein motif:PFAM:PF01012" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mta:Moth_0058 electron transfer flavoprotein subunit beta" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_002459236.1" /db_xref="GI:219668801" /db_xref="InterPro:IPR014730" /db_xref="GeneID:7259783" /translation="MHFVVCLKQVPDSSEVRIDPKTNTLMREGVPSIINPYDAHALEE AIRLKEKMGGKVTIVTMGPPQAKEALRKAMSFGADRAILLSDRAFGGSDSLATAYIIT QAILKINETDPVDLVLAGKEAIDGDTAQTGPGIASRLGFPQLTYVIKVTDINKDTITV QRKLETGKEVVQAKLPALLTVEKELNDLRYASLPNMMKAASYEPEMIDSKSFEFDVTQ MGLKGSPTSVNKIFAPPARSGGETFDGTKDPQGVAAQVVEKMFQHNIIMVNPAAKGGN R" gene 2979695..2982577 /locus_tag="Dhaf_2777" /db_xref="GeneID:7259784" CDS 2979695..2982577 /locus_tag="Dhaf_2777" /inference="protein motif:PFAM:PF03699" /note="PFAM: protein of unknown function UPF0182; KEGG: pth:PTH_1387 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0182" /protein_id="YP_002459237.1" /db_xref="GI:219668802" /db_xref="InterPro:IPR005372" /db_xref="GeneID:7259784" /translation="MRRTARIMLVLLGIGLILFIALSGLFEDYLWYSDLGYSQLFWTP LISKGIIQIINGTILFTFIAGTLFSIRHAILTFVNERLRKRLRLVHEMDRPLYHLSQR KMTLWLIIISVLISFGVSFVTGFTGWLEVLTFLNATPFGQGDPIFFKDLGFYVFQLPF FITIYNAFFGPLFFLTFFTIVFYSFAGVIHFQSLLIWKKQAIEINSAARRHLALLITV LFLFKGFGCYFDTFRLLYSQHGLVLGAGYAELHATLPALKALMVLCALGVIGGGLAFF KDEVRLLTLPILAIFISIPLLSGLGPMVLQSLVVIPNELEKETPYIQNEIALTRFAYG LDQISEEDYQADQPLTSETLQKELPTLNNVRLNDPHPLLRTYTQKQGIRPYYKFYNID MDRYRINGEYRQVMLAPREFSYQDLEKTAQTFVNLRFKYTHGFGVVASFANAVTPEGL PAFTIKDVPPTTDYQELQISQPRIYFGEMTHDWVVVNTDLKEFDYPEGKVNAETRYEG KSGIKLTPFNRLMLSIKHGTLRFYLANEINSQSRILLHRNIMDRVEKLAPFLQYDDNP YLVVDEGRLKWIIDAYTVSKTFPYSSMYPERELNYIRNSVKVVVDAYDGTVDFFAVDA QDPILQTYCKIFPGVFKDLSAMPDTLQTHLRYPETLFKIQSTMLKNFHMTDPTVFYNK EDTWDIAKELFGSEPQNIAPYYSVMRLPDSEQPESVLMIPFTPSSNANNIRNNMVAWL AARMDGEHYGELKLYKVPKNTEVDGPLQVESRIDQAPEISRQLALWDQKGSSVIRGDL VVLPLAGNFLYVEPIYLQSEKAGSIPEMKRVIVAYGDKIVMSETFEEALAQLFGVRLK LSPPPPANVSALAVSPMNAELKPEETEETTEETEEPIDPQEDTQALLKQIEQIREMLN QLEQQFKKITGDSVDVEGGKKADEDVHDVQTDPEGSVSSEQSKTNP" sig_peptide 2979695..2979766 /locus_tag="Dhaf_2777" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.780 at residue 24" gene complement(2982617..2983870) /locus_tag="Dhaf_2778" /db_xref="GeneID:7259785" CDS complement(2982617..2983870) /locus_tag="Dhaf_2778" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbk:CLL_A2565 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459238.1" /db_xref="GI:219668803" /db_xref="GeneID:7259785" /translation="MKRKTRALLRTITSWIMVSLMLQFAFYYFLNYKVEGIMAPVNAQ PIVVKSLETEIPGTNLENLQLSYGKDYLAYQENGVLKVYNLQQEKVVFEKSPQGESEY DMGPIYYQWLPDRDTLVYFYARRNPNPTTTVVVPVEEEPTEQGSTGSNNTAEPDAVED PNQAPPVKKTPKTRTEVRYNNPQITEVYTLELPPSDEEETAPDDRYNRSIDSFPAVGQ IKQMVVSTFTNLLYLAIENNGKFQLMEIDIMKNVRTLNQAGEVITQMAASDKFGTLYA KSTSGKSERIIGLQGWNREVVSDDADDVILGNREGMLYLGNIKDGKLVNIRSGEENSE EKSLKFKTVWEGSIPYDDAKDVIIGANGEIIVYNDLTAYIIKEGSDKEVKLDGEENYI SSDGVEVIQVTRVGMSTKVKLHPLQ" gene complement(2983899..2984867) /locus_tag="Dhaf_2779" /db_xref="GeneID:7259786" CDS complement(2983899..2984867) /locus_tag="Dhaf_2779" /inference="similar to AA sequence:KEGG:HM1_0349" /note="KEGG: hmo:HM1_0349 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459239.1" /db_xref="GI:219668804" /db_xref="GeneID:7259786" /translation="MMKKKRRVRWKMIVAFLVFNIIFAGCLVPFVLFWGPFEALKVMA VGAVETSRHPQVVRFFLSEEKISEIMHTYDDHGNQVGGNIDRQTDVEDTSSGIVIEDI QGKNFKGKVMLISDPKRVKLAVTQEIGVAGERLSDMVKHAGAIAGINAGGFYDPDGSG NGAFPDGITVQNGEVVHNNAGNKVVDFIGIDAEGKLIIGPMDVNQVKEKNIQEGVSFY PPLVKNGKPAVSGDGGWGIAPRTGIGQRADGTIIFVVIDGRQPTWSIGATLRDMMNVF LEYDAVEAVNLDGGSSSEMVYNGKIINKLWNIFGERYIPTGFVVTP" sig_peptide complement(2983899..2984033) /locus_tag="Dhaf_2779" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.865 at residue 45" gene complement(2985210..2985626) /locus_tag="Dhaf_2780" /db_xref="GeneID:7259787" CDS complement(2985210..2985626) /locus_tag="Dhaf_2780" /inference="protein motif:PFAM:PF02566" /note="PFAM: OsmC family protein; KEGG: drm:Dred_2833 OsmC family protein" /codon_start=1 /transl_table=11 /product="OsmC family protein" /protein_id="YP_002459240.1" /db_xref="GI:219668805" /db_xref="InterPro:IPR003718" /db_xref="GeneID:7259787" /translation="MQVTVTHIKGMHFEGEGQSKLKTQIDSSVTTGGSGYGSSPMELV LMAVAGCSGMDIVTILEKMRITYERLEISVVGERAAEHPRIFTDVELTFKFWGSNLPQ EKLLRAIQLSMEKYCSVANMIDKVANLTYKLETYPN" gene 2985814..2986818 /locus_tag="Dhaf_2781" /db_xref="GeneID:7259788" CDS 2985814..2986818 /locus_tag="Dhaf_2781" /EC_number="1.2.1.12" /inference="protein motif:TFAM:TIGR01534" /note="KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase, type I" /protein_id="YP_002459241.1" /db_xref="GI:219668806" /db_xref="InterPro:IPR000173" /db_xref="InterPro:IPR006424" /db_xref="GeneID:7259788" /translation="MTIRIGINGFGRIGRNVFRAAFGRENIEIVAVNNRSTGEILPHL LKYDSVHGIFPAQIQHTEDGFTVDGQLVKVVSHTDPGDIPWGELGVDIVIESSGKFNN GPACQKHLNNGARKVIISAPAKEEDITLVMGVNEEIYDPQKHHIISNASCTTNCLAPV AKVIHKNFGLKRGLMTTVHSYTNDQQILDQSHKDLRRARAAGLSIIPTTTGAARAVAL VLPELKGKLNGFSMRVPTPNVSVIDLVAEIEKNTTIEELNGVLRHASENKLKGILDYT DLPLVSSDFNGSSASSIVDGLSTMVMEDNLIKVISWYDNEWGYSCRVVDLVEYVSRQI" gene complement(2986869..2987405) /locus_tag="Dhaf_2782" /db_xref="GeneID:7259789" CDS complement(2986869..2987405) /locus_tag="Dhaf_2782" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459242.1" /db_xref="GI:219668807" /db_xref="GeneID:7259789" /translation="MDVKVLNIELIDRELYTVITEKGNVNIHPDDVLRIERTYTKEAF TGESVELDKIYTDKGFVYLSSQAPYAELGQKLMNTVDYYGFPLWERSGVDWNSLTKYS YAVGTPAQQVPLLFFLLSLQYAALTIGGIALIVLVFPLRLGEEEWESSSAFAQGEEES NQEEQDELRQEVMKSLAK" gene complement(2987583..2988290) /locus_tag="Dhaf_2783" /db_xref="GeneID:7259790" CDS complement(2987583..2988290) /locus_tag="Dhaf_2783" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459243.1" /db_xref="GI:219668808" /db_xref="GeneID:7259790" /translation="MNFHEFLISDQCDTPQDGGLQNIIAGFALLTRISAMPGSPVLSF VQPLIISRLFQASWVLLGSQILLLLAKHIFHLEKLPVLDLARGQKLQIPIEELQNLIQ YLGTRQKAAPSNQGAAFNNTTNGTGALAFPTELPPDSPVYAAIFISVDYANEVYTPTL LVYVPILSFPGLRGALPFLILALLAVILVRCVVPPETTGAKPVPKPRTGQNQSFNLSS EDVMAILRRFGRFFGSP" gene complement(2988599..2989165) /locus_tag="Dhaf_2784" /db_xref="GeneID:7259791" CDS complement(2988599..2989165) /locus_tag="Dhaf_2784" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459244.1" /db_xref="GI:219668809" /db_xref="GeneID:7259791" /translation="MAKIIAINRKYFTLILSALLVCLIGIAGVTLWKTAQVSANGPVP EVKMLGVAVEPGSFTQDLTYGTVTIKSSQVINANKFDLIATVQNTTSGKMANIPVELE VSLVGDNAQKVSKIGTLPSLDPGATARVAFRDIKALGDAAGKSATAGQHKITLRIKPN AEGGITQATEASFFFNVDSTVKAPNAAK" sig_peptide complement(2988599..2988682) /locus_tag="Dhaf_2784" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.505 at residue 28" gene complement(2989250..2990077) /locus_tag="Dhaf_2785" /db_xref="GeneID:7259792" CDS complement(2989250..2990077) /locus_tag="Dhaf_2785" /inference="protein motif:PFAM:PF01695" /note="PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pth:PTH_1010 hypothetical protein" /codon_start=1 /transl_table=11 /product="IstB domain protein ATP-binding protein" /protein_id="YP_002459245.1" /db_xref="GI:219668810" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259792" /translation="MKSVKHIMQESYLDELKHKREQSESPAAHSQLKPSVNCPLCEDR GIIFDGESARPCACMRQKRMENLFRHARMARGLLNCRFEAFRQEYYLSQANPQDRSYL EGALTALHASKEFVARCLDDYHGLGLILIGPVGAGKTFLAAAIANALMEQEHQVLFLV VPDLLDQLRATYKTDENELDLLDTAREIPILILDDLGAHNYTDWTRNRLYSIINYRLN QQLPTVITSNLSLEEMEEHLGARTTSRLIQSCRIFRMHVEQDIRLRQYQDREKERKK" gene complement(2990120..2990896) /locus_tag="Dhaf_2786" /db_xref="GeneID:7259793" CDS complement(2990120..2990896) /locus_tag="Dhaf_2786" /inference="protein motif:TFAM:TIGR01446" /note="TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: chy:CHY_1235 DNA replication protein DnaD" /codon_start=1 /transl_table=11 /product="primosome, DnaD subunit" /protein_id="YP_002459246.1" /db_xref="GI:219668811" /db_xref="InterPro:IPR006343" /db_xref="GeneID:7259793" /translation="MPRANVFGSFVQALFFSGTVGVPKYFLNHYSELEISHIEALLII QIMGEIESNPYPSSQLLAQRMNLDVTRVEEMIAHLMARNYLSLEQQWDSAAGKSTMSY SFVGLIDELSERWAIEQVKRYEAEQSQQKERFNQQESLSSPNTTIGQIIKTFEQELGR PLTSIECEVIETWIASKFSEELILAAFKRGVMAGIRNFRYIDSILREWEKKGLRTLHE VEADDAYFQAKHEKSRGKKTPQQQPARKVSPGKYEDFYLS" gene 2991102..2991692 /locus_tag="Dhaf_2787" /db_xref="GeneID:7259794" CDS 2991102..2991692 /locus_tag="Dhaf_2787" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rxy:Rxyl_3163 metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002459247.1" /db_xref="GI:219668812" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7259794" /translation="MEQRKELVHIINQSGAHPAWGLKHCNRVYLLAKELSQHLDLDDD ILFFSAMLHDTGRYPVYALANVDHSLRSKGVAANILQRMAFPSDKLPIVLEAVESHMY YSEPGRSDEAVYLRDSDILDNLGNIGITRLFSLIGQDELIRTPEDALERARTFAEALP NKVYTKTGKRLAVKRREEILRFLSGIRKQTAEFVNL" gene complement(2991706..2993418) /locus_tag="Dhaf_2788" /db_xref="GeneID:7259795" CDS complement(2991706..2993418) /locus_tag="Dhaf_2788" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: hmo:HM1_2504 metallo-beta-lactamase family protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002459248.1" /db_xref="GI:219668813" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR011108" /db_xref="GeneID:7259795" /translation="MKLYFYGAAQVVTGSSYLVESEGYRVLIDCGLFQGSKALKELNY GDFPYNPAELNAVILTHAHTDHSGLIPKLIKYGFQGKIYATPETIKLCSVMLPDSGHI QEMEVERKNRKLKRASQDLLTPIYTAQDAQDSLKFFTPAQYDQSTQLSPEISFTFHDA GHILGSAFVQMTVKEGELEKTLVFSGDVGNSEQPFIENPRIICGGDIVIVETTYGDRQ HENRANRIQHLAEIIREAHQAGGNLVIPAFAIERTQDLLFYIRKLQTENEIPVMPIYV DSPLAIAATKIFQENPQNFDQETLDMIQRGEHPLLMPNVHYSLTSEDSMAINSIQGGA IIIAASGMADAGRIKYHLKYNLWRENATVLFVGYQAQGTLGRRIIEGAKEVTIHGEKV AVRANIRRMEGLSAHADQPQLLEWLSCLGEDAENIILVHGEPDVQKTFAQKIQEKFGK IPWIPQLGEVLEIKNREVIPYPPSKPWLQVIEAEAQQASETRQAMAHGGAEVAQLPTL SRGKSGQAKITQAQINRAMQRLRHRLKVLVDNGRRSNNLEHTLAVIDTITRWLDDMDN KKKK" gene complement(2993502..2994140) /locus_tag="Dhaf_2789" /db_xref="GeneID:7259796" CDS complement(2993502..2994140) /locus_tag="Dhaf_2789" /inference="protein motif:PFAM:PF00072" /note="PFAM: regulatory protein LuxR; response regulator receiver; KEGG: hmo:HM1_1196 LuxR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_002459249.1" /db_xref="GI:219668814" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7259796" /translation="MIRVVIADDHPLLREGLRRILEFEEGIQVVCEVGDGQGAINVSR TLDFDILLMDLNMPGVNGLEACRVIRRENETIGILVLTVDDSDEKVFQVLQLGVAGYL LKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHPTQNRDTCGLSDRELQILTYV VKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKLVQLD" gene complement(2994137..2995318) /locus_tag="Dhaf_2790" /db_xref="GeneID:7259797" CDS complement(2994137..2995318) /locus_tag="Dhaf_2790" /inference="protein motif:PFAM:PF05384" /note="PFAM: ATP-binding region ATPase domain protein; Sensor DegS domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: fgenesh4_pg.C_scaffold_22036000001; . ; K07777 two-component system, NarL family, sensor histidine kinase DegS" /codon_start=1 /transl_table=11 /product="Sensor DegS domain protein" /protein_id="YP_002459250.1" /db_xref="GI:219668815" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR008595" /db_xref="InterPro:IPR011712" /db_xref="GeneID:7259797" /translation="MSNTTKSIVVKRGTRVADRLGLIMSNTLKAIETSKEEIFYIAET TRAETQRLIQELAQLKEEIVYTIAEVDKYQKLERRLRQRLMEVSREFGNHSEQEMIKS YTETKDVQVQLQLMQSKEMQLRARRDEIERSLIQMEKTIERAENLLNQVTMAINLLHG GISELSQNNNPEHRQEIAQKIIRAQDEERRRVAREIHDGPAQNLANIVLRLEIAEKLL ALDPTRVRAEITDLKGLVRSNLQDIRRIIFDLRPIALDNHGFISALEKYLMTFQETYH LTCDFKVIGKERRLLPAVEVALFRSLQEGLTNIAKHARADWARVLIEYEECQIQIQIT DRGIGFNVEEAFANPGDHFGLVGMKERIEMFNGQIILTSIPKKGTTVKLIVPNYEEGW E" gene complement(2995374..2996753) /locus_tag="Dhaf_2791" /db_xref="GeneID:7259798" CDS complement(2995374..2996753) /locus_tag="Dhaf_2791" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: PT repeat family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459251.1" /db_xref="GI:219668816" /db_xref="GeneID:7259798" /translation="MEAFFKEDQEIREWIDLFVEKLLTVNLLSGNEADGEFHQGRQAI EKIASSFQEMLDLPKEVLMDGIRQLVEQRLPDHRVIENFPDFYRLMNDMISAGLQNVE MQEQEYFPQPLAHLRVLGSQAEGITVPSSKVPLNGGGAQTKELDSFFSLKQHVLKTTD SPQTLSPKEPLNKGPATNTEPPPTYTEVDEKKELMKQEPLDQELSEDIKNKSGSNELG FSPNSNPSPAPAPAPAPGPDEMDKGIDDAIDEVIGEPLTDPIAKSLHELIDESLKQLL LESHSVIDEYTSVYTQPLENLEPDSKDEVHEEAVPSLSVLTALPKENEPVKVKSHGVP PVRDPFRFNANKKKNNRAVIEPPVKPAAAPQEIPQSGKALAQVLKHLCGDAAIQWNVS VDEYSFFAKIDNILIRVISEDDPSLEDGLTKEINVKMKKQGYKVFACSQEDLMYPRRL EREIRRVLR" gene complement(2997616..2998410) /locus_tag="Dhaf_2792" /db_xref="GeneID:7259799" CDS complement(2997616..2998410) /locus_tag="Dhaf_2792" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002459252.1" /db_xref="GI:219668817" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7259799" /translation="MIIIGERINGMFKDIGDALRNKDAKPLQHWALKQEEGGAHYLDV NSGPAVPKEERPEAYEWMVKVIQEVSNLPLCLDSTNYDAIEAGLKHLKRPGMINSVPA ERDKIERVFPMAVQYNASLIGLTMDKVGIPKDAENRIVFAMELVAAADEFGLPTDELY IDPLILPCNVAQEHAPEVLEAIRMVKTLSNPAPKTVLGLSNVSQKSPDRHLINRTYLA MAMAAGLDAAIMDANDDDLVDVAATGQILLNKSIYADSYLKVFRQR" gene complement(2998475..2999443) /locus_tag="Dhaf_2793" /db_xref="GeneID:7259800" CDS complement(2998475..2999443) /locus_tag="Dhaf_2793" /inference="protein motif:PFAM:PF03599" /note="part of a complex that catalyzes the cleavage of acetyl-CoA" /codon_start=1 /transl_table=11 /product="acetyl-CoA decarbonylase/synthase complex subunit delta" /protein_id="YP_002459253.1" /db_xref="GI:219668818" /db_xref="InterPro:IPR016041" /db_xref="GeneID:7259800" /translation="MAVALVKERYQSKVGEVVIGATAAEGGTRTSVVKVGGDSTLPFL HFEGKVENRAAIALEVTDVPPAWNDIVKSQYGDVINDPVAWAKKCVEEYNADMIYLKL IGANPEGENRSPEECAKVVKDVLAAVGVPLIVAGCEDPEKDNEVLAAVAEATSGENLL IGIAEQDNYKSITAAAMVHKHNLIARSPLDINICKQLNILISEMGLPLNRIVIDPMIG GLGYGIEYAYSIMERARLGSLANDKMLSMPMICTVGYEANRAKEANAAEEEFPGWGDL NDRAILWEALTAAGLLQVGASILLMRNPAAVKLVQQNIADLMEMNA" gene complement(2999467..3000222) /locus_tag="Dhaf_2794" /db_xref="GeneID:7259801" CDS complement(2999467..3000222) /locus_tag="Dhaf_2794" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mta:Moth_1199 cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_002459254.1" /db_xref="GI:219668819" /db_xref="InterPro:IPR002586" /db_xref="GeneID:7259801" /translation="MTKYVAVAGKGGVGKTTFTALLLRQMVKGLQSKSILAVDADPNA NLNEALGLEVTATISELLEDTKNPKAIPTGMPKDVFVEYKLQQSLIESQDIDLLVMGG PQGPGCYCYPNDLLRKYLETLGDNYDYVTVDTEAGLEHISRRTIPRVDVMFVISDSSA RGIRSAGRVYELIKGLRSAVDEVYLVVTKTTEGSLDSLSGEIEKTGLQLIGDIPLDPM VVTHDLEGRPLYTLPDDSLAVQAVEKIMKKAFK" gene complement(3000244..3002160) /locus_tag="Dhaf_2795" /db_xref="GeneID:7259802" CDS complement(3000244..3002160) /locus_tag="Dhaf_2795" /inference="protein motif:PFAM:PF00111" /note="PFAM: ferredoxin; KEGG: mta:Moth_1200 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_002459255.1" /db_xref="GI:219668820" /db_xref="InterPro:IPR001041" /db_xref="GeneID:7259802" /translation="MEKYQVKFMPDQQVIEVEKGTSLLKAASQAGIFIKSSCGGKGTC GACKVTVISGEAKSERTGNLSPEQLSRGVRLSCHTFVEGDLTVEVPPESRLQAHQVLL ENANAALLTETSKDLLTYYGYHPLARKVNIRCSEPTLTDNAGDWARLSLELKRVLQSD KPLTIPLSVLQTLPETLRQAHWDLSVILTDLELGYTVLHVEPANDRPCYGLAIDVGTT TVVVYLVDLDSGEIVDKQGSYNKQAQFGDDVISRIVYAVDSKENMAEIQKAVVDTVNA LIDGILERQSLTSQDIASAVIAGNTTMSQLFLGINPRYIRLEPYIPTVNSTPAVSARE IGLRLLPEALIHTYPSVASYVGGDIVSGALATDMANSDEIILFIDIGTNGEIVLGNKD WLVSCACSAGPCFEGGGILFGMRAMPGAIERVDIDPESLDVKLKVVGKIAPVGICGSG LVDCLAKLRKAGIIDRAGNFQLEHPSQSARIRATEDDKEFVLAWAHQAGGDKDIVISE NDVKNLIRAKGAIYAGIRSLLQTVALEIDMIERIVIGGGFGNYLNVHDSVEIGLLPDL PQEKFEFIGNSSVKGARLALLSQKAWNEAADLARKMTYIELSIGTTFMDEFVSALFLP HTDLSLFPSVEGTF" gene complement(3002195..3003517) /locus_tag="Dhaf_2796" /db_xref="GeneID:7259803" CDS complement(3002195..3003517) /locus_tag="Dhaf_2796" /inference="protein motif:PFAM:PF03599" /note="part of a complex that catalyzes the cleavage of acetyl-CoA" /codon_start=1 /transl_table=11 /product="acetyl-CoA decarbonylase/synthase complex subunit gamma" /protein_id="YP_002459256.1" /db_xref="GI:219668821" /db_xref="InterPro:IPR007202" /db_xref="InterPro:IPR016041" /db_xref="GeneID:7259803" /translation="MALTGLEIYKQLPKKNCGECGTPTCLAFAMALASGKGSLDACPY VTDEAREALDSASAPPIKAIKFGNGSVLGDETVLFRHDKTFYHPTTLLIEIADTLSDE EVQGKLQEIEGLEFDRVGLHYTIDGVAVIEASGSPEQFAKVVAQVAAGTERSLLLLSD NADALKAALPGVAGRKPLIGSATEANYEAVVNLAKEHNVPVIIKADGLDALAALVENA QKLGYKEFVLDPGARTPSQTLANLTHCRRLAIKKKFRPFGYPVIAFTSKTEPLAEITE ASVYVAKYASAIVLKASAKAHILPLMALRQNLYTDPQKPIQVEPILHTVGEVNENSPI YITTNFSLTYYSVEGEVEASKIPSYILPIDTDGTSVLTAYAAGKFEPEKIADILAKSG VGDKVNHRNLIIPGYVAVISGKLQEISGWKVIVGPRESSGIVSFTRAM" gene complement(3003591..3005771) /locus_tag="Dhaf_2797" /db_xref="GeneID:7259804" CDS complement(3003591..3005771) /locus_tag="Dhaf_2797" /EC_number="2.3.1.169" /inference="protein motif:TFAM:TIGR00316" /note="in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex" /codon_start=1 /transl_table=11 /product="bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta" /protein_id="YP_002459257.1" /db_xref="GI:219668822" /db_xref="InterPro:IPR004461" /db_xref="InterPro:IPR005829" /db_xref="GeneID:7259804" /translation="MSMEQIYADAIKDPSKEPKKLLRKAYDGTITAMSYAEILLNRAL KDYGPQQTVGYPDTAYHLPVITCLSGDKVTTLGELVPLLNRVRNQVKTELTFENARLW GESVLYAAEIIEILHYLRNDEPKVAPWTGFLGDPIVRKHGIKMVDWTIPGVAVILGRA KDSPSAKKIVDNLMGKGFMLFLCDEVIEQLLEENVKIGEDYIAFPLGNFTQVIHAVNY AFRAGLAFGGIPAGQREQHRDYQHRRVRAFVLHLGELDDVKVAAEMGAIFMGFPVLTD QELGEDMQIPDWYLSEPDYEKIVPLALEVRGIKLTNIEIPIPVNFGPAFEGETIRKGD TYVEFGGGRTTAFELVSMVGPDEVVDGQVTVIGPEIDTVPEGSRLPLGIKVDIYGRKM QEDFEGVLERRIHYFTNYGEGVWHVAQRDLCWVRISKDARAKGFLMKHIGELLLAKFK QEFPAIVDRVQVTIYTDQQAVEENLVKARERYRARDARLKSLTDENVEEFYSCLLCQS FAPNHVCIVSPERVGLCGAVSWLDAKAAFEITPTGPNQPIPKGLAIDEVKGMWQSVND YLRPSSNNTLEEVNLYTLMDRPMTSCGCFEAIMAIVPEANGLMITTREHSGMTPCGMT FSTLAGTVGGGLQTPGFMGIGRSYIISRKFIPADGGISRIVWMPKELKEFLKEDLVAR SIDEGLGEDFIDKIADESVGTTVEEIIPFLEENGHPCFSLDPLM" gene complement(3005790..3007808) /locus_tag="Dhaf_2798" /db_xref="GeneID:7259805" CDS complement(3005790..3007808) /locus_tag="Dhaf_2798" /EC_number="1.2.7.4" /inference="protein motif:TFAM:TIGR01702" /note="KEGG: mta:Moth_1203 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase, catalytic subunit" /protein_id="YP_002459258.1" /db_xref="GI:219668823" /db_xref="InterPro:IPR004137" /db_xref="InterPro:IPR010047" /db_xref="GeneID:7259805" /translation="MPRYRDLTHTSRPSNAPRVVEPKNPLRTTDPGTIEMLKVAQENK LETVFDRFVAQQPQCGFGYKGICCRICLAGPCRVKAEDGPASRGICGATAYTIVSRNL VRMIAGGAASHSEHARHVLHTAHELVEGKTKDYEIKSPEKLHKLAEKLGIETLNRDNM EILGDVTELAYEDFGRYKDRPAAFLDSFLIEQRHNKFLNTNIMPRNIDGTVTELMAQT AQGVDADPVNIIFGGLKGSLADLVGEYIGTNLSDVLFGIPEPIVSEANLGVIEEKMVN IAVHGHNPVLSEMVVGAARELKAEAQKAGAEGVNIVGICCTGNELLMREGVYLATSSA SQEMAILTGVLDAMVVDIQCIYPSLTQLCDCYHTKMITTEAIMKVPGAQHLAFNSETA MEDAKKLVRIAIEAYKRRDPKKIALSKTRNSLVAGFSIEALTDIFGKINPERPFSVLT DAILSGQIKGVVQMAGCNNLKRQQDESHVAILKELVKNDVFVVATGCSAGAFAKMGLM NSEAVEEYAGEGLKSFIRQLEEANPQLSTKLPLVFHLGSCVDNSRGMDLVQAMAKELG VDTPKVPFAASAPEAMHEKAVAIGSYCVSMGIPTHVGTMPYLEGSDLIYGIATQIAHD VFGGNFIFEVDEKIAAQKILNALEYRSWKLKIHKQTAEKFDTAIAQGW" gene complement(3007871..3008638) /locus_tag="Dhaf_2799" /db_xref="GeneID:7259806" CDS complement(3007871..3008638) /locus_tag="Dhaf_2799" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tte:TTE1709 CO dehydrogenas ematuration factor" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_002459259.1" /db_xref="GI:219668824" /db_xref="InterPro:IPR002586" /db_xref="GeneID:7259806" /translation="MKIAISGKGGVGKTTFAANLAHYLSEQGMRVLAVDADPDASLGT VLGIAEDALNRLRPIVDMKELIEQRMGGSGAFYPLNPQVDDILDDYSVQVGPIRFFRM GNVKGGGTACYCKENSFLHALVNSLILSEQDTVILDMGAGIEQLTRGTAQGVDVLVIV TEASTVSAHTVRVIQKLAQELGIPKVSVIGNKIRSSKDEDFLKAQFTEDELLGLIPFS EELLDMSIHTDNSSFPKGAPGSQLESVYRKLMEGRDI" gene complement(3009021..3009209) /locus_tag="Dhaf_2800" /db_xref="GeneID:7259807" CDS complement(3009021..3009209) /locus_tag="Dhaf_2800" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459260.1" /db_xref="GI:219668825" /db_xref="GeneID:7259807" /translation="MLKIPRRLFFQVQSPARPCEPFAPAQSGDFYDEEIPLTSLDDIE WATNVLEPEQQRGPSENP" gene complement(3009358..3010212) /locus_tag="Dhaf_2801" /db_xref="GeneID:7259808" CDS complement(3009358..3010212) /locus_tag="Dhaf_2801" /inference="protein motif:TFAM:TIGR00762" /note="TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: gka:GK3149 hypothetical protein" /codon_start=1 /transl_table=11 /product="degV family protein" /protein_id="YP_002459261.1" /db_xref="GI:219668826" /db_xref="InterPro:IPR003797" /db_xref="GeneID:7259808" /translation="MKKTAIIMDSTGYLTNDIIEEHDIRVVTLNVNIGDETFPEIDLT NRDFFGKLEQLSGSSTTSQPSVGAFLEVYKAVLAEGYEEIISIHLSEKISGTYASAIM AKDLLENPHIHIFDSGSSALGLGLLTWAAADWAREGLNAQEILGKLETLRPLCELYFI VDTLEYLHRGGRIGGASALFGTLLQIKPILYFNTEGIIDVFDKVRSKNRALQRVYKEL ERALASQKPHRIAVMHVGAEAEAVSIAEELSQKYQGQDIRIFEAGPVIATHVGPGAVG LVFHPWPH" gene complement(3010470..3011423) /locus_tag="Dhaf_2802" /db_xref="GeneID:7259809" CDS complement(3010470..3011423) /locus_tag="Dhaf_2802" /inference="protein motif:PFAM:PF04069" /note="PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: tex:Teth514_1203 substrate-binding region of ABC-type glycine betaine transport system" /codon_start=1 /transl_table=11 /product="Substrate-binding region of ABC-type glycine betaine transport system" /protein_id="YP_002459262.1" /db_xref="GI:219668827" /db_xref="InterPro:IPR007210" /db_xref="GeneID:7259809" /translation="MDTSQTTEEYEEKGKVTMMMKKNLMMWSLVGVLMLALVGCSSSA AKSGESITVGSKNFTENIIIAHMMADLVEAHTDLTVDRKVNLGGSNVAWTALENNDIQ MYPDYTGTIVANYYQEATGTSEETMAKTLELTAEDNLKALGSLGFNNTYTLAVTKETA QKYNLKTYSDLVGVSEQLVLGCEFEFKDRPDGYPGLQDTYNMNFKEVKGMDHGIMFRS LVEGEVDVVDAYATDGQIKVFDLVILEDDREFFPPYDCLPLVRQDTLDQYPELEEILN KLAGQINEADMQELNAKVDDQGMKEDVVAHDFLVSAGLIKE" sig_peptide complement(3010470..3010607) /locus_tag="Dhaf_2802" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.830) with cleavage site probability 0.595 at residue 46" gene complement(3011441..3012097) /locus_tag="Dhaf_2803" /db_xref="GeneID:7259810" CDS complement(3011441..3012097) /locus_tag="Dhaf_2803" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lwe:lwe1439 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459263.1" /db_xref="GI:219668828" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7259810" /translation="MRNESLWTQIILQLEMRWPDLTAALLQHIELVFISMLIAITIGV PLGILITRVKALEGPVLGVAGILQTIPGLALLGFMIPLFGIGIKTAVAALFLYSLLPI IRNTFTGIKDVDKATIEAAKGMGMTDWQILTKVQLPLALSVMMAGIRTATVINVGTAT LAAFIGAGGLGDFIFIGISRNLDALVLIGAFPAALLALLLDWLLGRLEKTTTPRGLKV" gene complement(3012087..3013226) /locus_tag="Dhaf_2804" /db_xref="GeneID:7259811" CDS complement(3012087..3013226) /locus_tag="Dhaf_2804" /inference="protein motif:TFAM:TIGR01186" /note="KEGG: tex:Teth514_1201 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="glycine betaine/L-proline ABC transporter, ATPase subunit" /protein_id="YP_002459264.1" /db_xref="GI:219668829" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005892" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259811" /translation="MIKFENVSKKYDDGTEAVKSLNFEINSGELMVLIGPSGCGKTTT MKMINRLIPHTGGKITIDGQDIDSIDPVPLRRNIGYVIQQVGLFPHYTIENNIALIPR LKKWPESKLKERVAYLMDVVGLDAGVFAKRYPRELSGGQQQRVGVARALAANPDIILM DEPFGALDPMTREQLQDELLRIQSEMHKTIVFVTHDMDEALKLGDRIAVLRDGELLQL DTPDQLLSNPAHGFVEEFIGKNRIYQNPDYIPITDIMRDNPAIILPSKTPVVAISFMR QRKTDTLIVCDEKGKLLGIIPSYELHAKKEMIQTLAEIVQPVDRVLANTATAKDALQM INTAAYGIIPVVNELQKVVGAVTRGSLLSFFANQWSGEGEGADEK" gene 3013514..3013590 /locus_tag="Dhaf_R0066" /note="tRNA-Pro1" /db_xref="GeneID:7259812" tRNA 3013514..3013590 /locus_tag="Dhaf_R0066" /product="tRNA-Pro" /db_xref="GeneID:7259812" gene 3013847..3014365 /locus_tag="Dhaf_2805" /db_xref="GeneID:7259813" CDS 3013847..3014365 /locus_tag="Dhaf_2805" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459265.1" /db_xref="GI:219668830" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259813" /translation="MNRISRSAEEIESVIREYSDMLYRICLVMLGSQQNAEDALQDIF VKYISKAPVFTGAEHQKAWLIRVAANVCKDMRRFNFRHKHMNIERLSEFCKSEEDSGI LEAVFSLPAQYRMVLFLHYVEGYDVGSIAHMADISPAAVKKRLQRGREKLKLKYTEED FGYEKTPVKTSI" gene 3014334..3015053 /locus_tag="Dhaf_2806" /db_xref="GeneID:7259814" CDS 3014334..3015053 /locus_tag="Dhaf_2806" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cac:CAC1510 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459266.1" /db_xref="GI:219668831" /db_xref="GeneID:7259814" /translation="MKKHQLRQAFSGIHITAELQQRLIENCTRSAAAEAKAKAYRLPR RWLALAASLTLFVACFSQTTYGSSFYEKFVGVVLGGHTYYLTGPVPANDVPDPSLMKD SSEENHTDSRRPGFTDLAEAQAYLDFELKLPTYLPEGYQLDRISLYTTNNDAISGEYA DIFFTKGKRLIYLQTRLMNEKTSFATELGNMKLTEINGYSALQGRKNLDVDINGVMYM FSASKADVGADELIKMVESID" gene 3015220..3015777 /locus_tag="Dhaf_2807" /db_xref="GeneID:7259815" CDS 3015220..3015777 /locus_tag="Dhaf_2807" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_0988 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459267.1" /db_xref="GI:219668832" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259815" /translation="MLQGKKTFLRPLELDDIPIFYQWYNNQNLNYWANAAWPLSTMLS EEEIEERFFTPQKDGSRYLILNEEQKPIGTVGYRDVNLPARSAVLFIVIGESDYWNRG YGTDALKVLIDYLFYQWNFHRLSLDLWDGNLRALKAYEKLGFKVEGRLRQARFVLGEY RDGILMGLLRDEYLEHHPPHPPQGI" misc_binding 3015833..3015947 /note="FMN riboswitch (RFN element) as predicted by Rfam (RF00050), score 106.36" /bound_moiety="flavin mononucleotide" gene 3016078..3017175 /locus_tag="Dhaf_2808" /db_xref="GeneID:7259816" CDS 3016078..3017175 /locus_tag="Dhaf_2808" /EC_number="3.5.4.26" /EC_number="1.1.1.193" /inference="protein motif:TFAM:TIGR00326" /note="KEGG: gur:Gura_2183 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibD" /protein_id="YP_002459268.1" /db_xref="GI:219668833" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR002734" /db_xref="InterPro:IPR004794" /db_xref="InterPro:IPR011549" /db_xref="InterPro:IPR016192" /db_xref="GeneID:7259816" /translation="MELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGAIVGEGYH QKAGTPHAEVHALQAAGEHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMV DPNPLVGGQGITRLRAAGIQVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDG KIATESGDSKWVTNEASRAYVHRLRDHFDVIMVGSETVRQDNPALNCRIDEGRDPVRL IVDGTLQIPLQAAVLASSCTAPCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPL KDLLGDLVKRGWNSVLLEGGGGLAGSLLREQLIDEVEFIYAPKLIGGKGPSPLTGLEL PLMAQAIPLEFLEIDGGTGDLRVRAKVNYAD" gene 3017231..3017875 /locus_tag="Dhaf_2809" /db_xref="GeneID:7259817" CDS 3017231..3017875 /locus_tag="Dhaf_2809" /inference="protein motif:TFAM:TIGR00187" /note="catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine" /codon_start=1 /transl_table=11 /product="riboflavin synthase subunit alpha" /protein_id="YP_002459269.1" /db_xref="GI:219668834" /db_xref="InterPro:IPR001783" /db_xref="GeneID:7259817" /translation="MFTGIIEELGKVTDLKVLPDSAQLTLEGTKVLESTQIGDSIAVN GICLTVVKMQGNLFTVDVMAETLHKTNLKECSRGTQVNLERALQLSTRLGGHLVSGHV DGVGTIQKITPVGIARVFTIKATPELLNYVLPKGSIAIDGISLTVVELLPQAFTVSLI PHTRQETTLGFKGVGDVVNLETDLIGKYVARFMEKKEAPRKDLSMSFLAENGFI" gene 3017903..3019111 /locus_tag="Dhaf_2810" /db_xref="GeneID:7259818" CDS 3017903..3019111 /locus_tag="Dhaf_2810" /EC_number="3.5.4.25" /inference="protein motif:TFAM:TIGR00506" /note="KEGG: chy:CHY_1473 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone 4-phosphate synthase" /protein_id="YP_002459270.1" /db_xref="GI:219668835" /db_xref="InterPro:IPR000422" /db_xref="InterPro:IPR000926" /db_xref="GeneID:7259818" /translation="MEFRFNTIEEAIEDIRQGKIIVVVDDEERENEGDLLMAAEKATP EAINFMATHGRGLICVPMTAERIQALNLEPMVTHNTDPHGTAFTVSVDGCDCTTGISA FERANTVKVLLDPHSRPENLRRPGHIFPLKAREGGVLVRAGHTEGAVDLARLAGFQPA GVICEILKDDGTMARVPDLMEFVKKHDLKMVTIKDLIHFRRQKEKLVERVVGIELPTD FGDFKAVGYRSLLDGQEHIALVKGDVDDGEPVLVRVHSECLTGDVFHSRRCDCGEQLS AALESIQKEGRGVLLYMRQEGRGIGLLNKLKAYKLQEEGKDTVEANLALGFPADLRDY GVGAQILVDLGIRKVRLMTNNPRKIVGLEGYGLEIQERVSMEMPVKPENQHYLHTKKI KLGHYLPGVR" gene 3019178..3019642 /gene="ribH" /locus_tag="Dhaf_2811" /db_xref="GeneID:7259819" CDS 3019178..3019642 /gene="ribH" /locus_tag="Dhaf_2811" /EC_number="2.5.1.9" /inference="protein motif:TFAM:TIGR00114" /note="RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="YP_002459271.1" /db_xref="GI:219668836" /db_xref="InterPro:IPR002180" /db_xref="GeneID:7259819" /translation="MMTYEGKLIAEGLKFGIVAARFNEFITNKLVGGALDALLRHGVA ESDIEIAWVPGAFEIPLVAQKMAETKKYDAIICLGAVIRGATPHFDFVSAEVSKGVAH VGLETKLPVVFGVLTTDTIEQAIERAGTKAGNKGFDSAITAIETVNLLKMIQ" gene 3019781..3020401 /locus_tag="Dhaf_2812" /db_xref="GeneID:7259820" CDS 3019781..3020401 /locus_tag="Dhaf_2812" /inference="protein motif:TFAM:TIGR02937" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-70" /protein_id="YP_002459272.1" /db_xref="GI:219668837" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259820" /translation="MTSSNTLLADIDTQLEAARSGNQDSLNWLIQYYEPEIRKIAYKY FLNRAEYDDLLQEGRIAIYKAIVSYDPSSEIPFLHFLRMVIKRKLIDSLRAHNRQKHL NLNEAYSLNNVLADDKTDSFISFVATHDDPEKKVIASDETRLFLQGLMNGFSELELKV FRYHYLIGMKQREITQYLGVSSKSLDNTIQRIRRKVIAYRDREAVG" gene complement(3020485..3020748) /locus_tag="Dhaf_2813" /db_xref="GeneID:7259821" CDS complement(3020485..3020748) /locus_tag="Dhaf_2813" /inference="similar to AA sequence:KEGG:Amet_3741" /note="KEGG: amt:Amet_3741 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459273.1" /db_xref="GI:219668838" /db_xref="GeneID:7259821" /translation="MNRWVFLTNVTTEVEADIVIGLLEQGHIPAQKAYPGLGNLKAAY GIVNGVEIYVPEDCLKHAKEILAAEGAENAPDEAPDPDVECDR" gene complement(3020837..3023431) /locus_tag="Dhaf_2814" /db_xref="GeneID:7259822" CDS complement(3020837..3023431) /locus_tag="Dhaf_2814" /inference="protein motif:TFAM:TIGR03346" /note="KEGG: rca:Rcas_0920 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ATP-dependent chaperone ClpB" /protein_id="YP_002459274.1" /db_xref="GI:219668839" /db_xref="InterPro:IPR001270" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004176" /db_xref="InterPro:IPR010448" /db_xref="InterPro:IPR011704" /db_xref="InterPro:IPR013093" /db_xref="InterPro:IPR017730" /db_xref="GeneID:7259822" /translation="MSFDTNRFTQKSQEAIIQTQTMAERNGNSQVEPEHLLLALLEQG EGVVPQVLTKLDIPVGALVQKVRQEVNRLPRMMGANVQLTISPRLRTVLVSAHDEMET FKDDYVSTEHLLLAILSQGGGPAEKILKQEGLNREKLLQALRVVRGTQRVTSQTPEGT FRALEQYGRNLVEQARRGKLDPVIGRDEEIRRVIQILSRKTKNNPVLIGEPGVGKTAI VEGLAQRIVRGDVPESVKDKKIIALDMGSLIAGAKYRGEFEERLKAVLKEVQEREDII LFIDELHTVVGAGAAEGAMDAGNMLKPMLARGELHMVGATTLDEYRKYIEKDAALERR FQPVTVGAPSVEDTISILRGLKERYETHHGVRITDGAIIAAAVLSDRYISDRFLPDKA IDLIDEAAARMRMEITSDPYELDQIKRRILQLEIEREALKKEKDEGSKERLEKIEEDL ANLKEERSALEAQLQGEREVLTRINSLKEDIDQNRLKMEQAQQAFDYNKAAELQYGIL PKLEKELNALEEQLRNRKNTLLKQEVGEEDIAEVVAKWTQVPVAKLLESEMDKLVHME ARIHQRVIGQEEAVKAVADAVRRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEF LFDDDQGIVRIDMSEYMEKHTVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEV EKAHGDVFNVLLQLLDDGRLTDGQGRVVNFKNTVVILTSNIASPLIQELTASGAAQEV LRSRVTEELRLHFRPEFLNRLDEIIVFHPLGQEHIGSIVQIQINKLRDYLAPRKMTLE LSQGALNKIIQQGYDPIYGARPLKRVIQQNLQNPLAMKILQGILHEGDHVLVDLDPQG QLLFKKSE" gene complement(3023625..3025352) /locus_tag="Dhaf_2815" /db_xref="GeneID:7259823" CDS complement(3023625..3025352) /locus_tag="Dhaf_2815" /inference="protein motif:PFAM:PF02878" /note="PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cth:Cthe_1265 alpha-phosphoglucomutase" /codon_start=1 /transl_table=11 /product="phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I" /protein_id="YP_002459275.1" /db_xref="GI:219668840" /db_xref="InterPro:IPR005841" /db_xref="InterPro:IPR005844" /db_xref="InterPro:IPR005845" /db_xref="InterPro:IPR005846" /db_xref="InterPro:IPR016066" /db_xref="GeneID:7259823" /translation="MIQERYRFWLTSPYFDEDTRSEVAAINDEKEIEDRFYTDLEFGT GGLRGVLGAGTNRMNIYVIRKATQGLADLILEGGEAGKNRGVVIAYDSRRFSDRFAKE AALVLAGNGIKAYLFDDLRPTPELSFAVRHLKAQAGLVITASHNPKEYNGYKVYWEDG GQVPPDRGDRILAHIKAHQAWDDILPLEEAEARDKGLLVEIGEEIDAVYLSKVKELAL YPELSQAKGSNLSIVYTPLHGAGNVLVNRILTEMGYSVFTVPEQEKPDPEFTTVPYPN PEIPSTFDLARSYGKARNAQMLIATDPDADRLGMALRTPQGDYRQLTGNQVGTLLSYY LLTQKKRLGILPEQAVVIKTIASTDLADLLVKDLGARVENVLTGFKFIAEKEQEMEVQ GSGDFQFGFEESYGYLAGHFVRDKDAVIASLLLAEAALYYQEKEGRSLLEVLEDIYGK YGYFIDDQISITLEGKAGKEQMEKMMVKLRETDVKSFGGIAVACIDDYELRKGRRMIA PFHSYELALPQSNVIRYSFQGGGFVMARPSGTEPKIKFYFNIRGVNPQELPTTLEAVK KDLLELIKD" gene complement(3025437..3026318) /locus_tag="Dhaf_2816" /db_xref="GeneID:7259824" CDS complement(3025437..3026318) /locus_tag="Dhaf_2816" /inference="protein motif:TFAM:TIGR00762" /note="TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: drm:Dred_3318 DegV family protein" /codon_start=1 /transl_table=11 /product="degV family protein" /protein_id="YP_002459276.1" /db_xref="GI:219668841" /db_xref="InterPro:IPR003797" /db_xref="GeneID:7259824" /translation="MAEPINSRETKIAIVTDSACDLEPELIEEYGIEVVPLHIIYRDR EYRDRVDISPQEVYDSLEQEVPKTSLPSPAEIQAVFNRLREQKVTHILSLHLSSGLSG TYQAVSLIAQEFKDMIIEVVDTKTLSMGLGMTVIEAARESRRTVDFEHVVASAKKAVE QIKGYYVLSTLEYLKKGGRIGYVAGTIGELLSLKPIISINEEGKYFTFAKVRGREQSL KRLKQVLLDHLKESIASVAIVHGGSEKEARDLEKVAREHPNVKEVFFGQISPALGVHT GPGLVGLLVYPRLEGSI" gene complement(3026441..3027025) /locus_tag="Dhaf_2817" /db_xref="GeneID:7259825" CDS complement(3026441..3027025) /locus_tag="Dhaf_2817" /inference="protein motif:PFAM:PF03358" /note="PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0076 NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_002459277.1" /db_xref="GI:219668842" /db_xref="InterPro:IPR003680" /db_xref="InterPro:IPR005025" /db_xref="GeneID:7259825" /translation="MKPHILGIAGSPRRNGNTDRLLKTAMNALAEAGYSTEIINIRDL QYSPCLGCNACSKTGRCVQNDDIQYLQERLVAADRIIVAAPVFFMGINAQTKAVIDRM QTFWALKYVFKQPVITDPERLPRYGLFLSTAGTQFPDVFACAERAVKNLYHVLDVKYY GSCAYKGIDQSGDIEQHPAALQEVREKALILAQL" gene complement(3027221..3027322) /locus_tag="Dhaf_2818" /db_xref="GeneID:7259826" CDS complement(3027221..3027322) /locus_tag="Dhaf_2818" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459278.1" /db_xref="GI:219668843" /db_xref="GeneID:7259826" /translation="MSDNEKLVIEAILASIGLESIKGPNSKISCKSQ" gene complement(3027479..3028315) /locus_tag="Dhaf_2819" /db_xref="GeneID:7259827" CDS complement(3027479..3028315) /locus_tag="Dhaf_2819" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_2615 acetyltransferase, GNAT family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459279.1" /db_xref="GI:219668844" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259827" /translation="MFYYSHLADVGIEELTLAWNRCWQGYAYEVRYSAAQMQAWLEKC RIDLSHSTALRDSQRILGFALLALEDQMGWIAGTCIDPEFRGRQLFRPLLEDQLARAE SLQLKGIQLEVLSHNHAAKSYEGIGFQKKRDLYVYRYHDGIPLACANPGRGCSLRQAN LSDYFQARHEAGFHPPWQRQEGYLRRYAALRAWLNAEGTAGILMPQESHVVLDAWTMA WEQAEKLISSVLSLSQGEFVLTNQPKDWLTAYLSRQGVNPSDIQYEMLYPMHPIQSAN IE" gene complement(3028339..3029343) /locus_tag="Dhaf_2820" /db_xref="GeneID:7259828" CDS complement(3028339..3029343) /locus_tag="Dhaf_2820" /EC_number="1.1.1.26" /inference="protein motif:PRIAM:1.1.1.26" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sth:STH3215 putative glycerate dehydrogenase" /codon_start=1 /transl_table=11 /product="Glyoxylate reductase" /protein_id="YP_002459280.1" /db_xref="GI:219668845" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:7259828" /translation="MKRGIILKPRVFITRKIPEDILTLIEEVCEVKVWPEEDTPIPRS VLEQEIREVDGLYCLLTETIDASLLDLGKNLKVVSNMAVGYNNIDIEAATQRNILVTN TPGVLTETTADLTFALLMMTARRMEESSQYLRQGHWKTWSPMLLAGQDIFGATLGIVG MGRIGEALVKRAKGFDMKIIYYNRTPKPELEESLGIEYRSLDELLQEADFVCILTPYT PETRNLIGKRELELMKPTSILINTARGGIVNEEDLYEALAQQKIYAAGLDVFEQEPLP TDHPLLTLTNCVALPHIGSATVKTRREMARLAAQNLLAYLQGQRPPHCVNPSVLTPKL" gene complement(3029434..3029547) /locus_tag="Dhaf_2821" /db_xref="GeneID:7259829" CDS complement(3029434..3029547) /locus_tag="Dhaf_2821" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459281.1" /db_xref="GI:219668846" /db_xref="GeneID:7259829" /translation="MYGYGGACGGGGGFGGYAGVGIIAIAILILIALGVIF" gene complement(3029593..3029700) /locus_tag="Dhaf_2822" /db_xref="GeneID:7259830" CDS complement(3029593..3029700) /locus_tag="Dhaf_2822" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459282.1" /db_xref="GI:219668847" /db_xref="GeneID:7259830" /translation="MALGAGLDGCGPNYLAGIAIVVVIILLLIAMGIVF" gene 3030277..3031029 /locus_tag="Dhaf_2823" /db_xref="GeneID:7259831" CDS 3030277..3031029 /locus_tag="Dhaf_2823" /inference="similar to AA sequence:KEGG:CHY_1799" /note="KEGG: chy:CHY_1799 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459283.1" /db_xref="GI:219668848" /db_xref="GeneID:7259831" /translation="MKAQFTLTPSESKRLIAKGVKALPILRKALQNHTIILAGGTTNG FLVEELLNETLAEKTRYTVGLIADGKTGESKEEQRIPPFIIAKGKALDRSLHWKDFLP QLEPGDVFIKGGNALDSTGLAAVLVSNSMAGTIGAALGPLYARGVRLVVPIGLEKLIP DVREAVEFMASAPADTALGAKTGLVPMLGATVVTEITALETLYQVTAKCIGAGGVAGS EGAVTLVIEGEAAEVESALSLIQSCKGEPPVR" gene complement(3031252..3032007) /locus_tag="Dhaf_2824" /db_xref="GeneID:7259832" CDS complement(3031252..3032007) /locus_tag="Dhaf_2824" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cac:CAC3475 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002459284.1" /db_xref="GI:219668849" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR015358" /db_xref="GeneID:7259832" /translation="MKTVNEVSKLSGVSRRTLQYYDEIGLLPPSAVKESGYRQYDEES LRRLWSILFYKELGLSLDDIRLLLESPKEMEKEIMRQHKQILLAKQSALQKMILSVDR ILNDEFDISMLRDFDRNRLETMKKTYANEIRGLMESKFFLPLVKSGILPGRASLVKNA SNIMNLDFAELISLCGDVMLKFREAMRDGPESSAAKKAVAAYSELLNMWIPCDDTVFR KIGQAYSIHKEALDKKSPGLAEFVSKAILHVYQ" gene 3032158..3033579 /locus_tag="Dhaf_2825" /db_xref="GeneID:7259833" CDS 3032158..3033579 /locus_tag="Dhaf_2825" /inference="protein motif:TFAM:TIGR00711" /note="TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gtn:GTNG_0403 transport protein" /codon_start=1 /transl_table=11 /product="drug resistance transporter, EmrB/QacA subfamily" /protein_id="YP_002459285.1" /db_xref="GI:219668850" /db_xref="InterPro:IPR004638" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7259833" /translation="MMGKSGKAPELEPIPKNIMNIAWILVLGAIMPLLDSTMVNIAIN HLSHDFSIGLDLIQWVITGYVLAMAISVPLAGWMVQRFNGKWLMIGANILFLAASIAS GFSWSIHSLIIFRVVQGFSAGFIMTLVTTLCVETAGRERMGRLMSTIGIPTVLGPILG PVIGAVIVQFLSWRYIFFVNIPLGILAITLMIWKLPDFTPANIKAKFDFIGIILLGTA SAALIYGITKAAKSATFNNSTTIAYGVAGIAILAIYMIYAALKKDQAILPLHLFRLKN FSAVMVGLFLAGIATNGPMLLLPLFFQNIKGFSVLNTGLILIPQGIGMLIARPLIGKL TDKWGARNVVLVSLALTIVGTIPFIFINEASSLFVVSLVLFVRGVGIGGVTIPMMTDA YTGMVKQEIAQASVGTRLMQNIGGAFGSAVMATAVSLSIQGKTPTIPLMTTAYHDGFM LALVLSLVLVIPSLFLTNKTAKQ" gene complement(3034193..3036172) /locus_tag="Dhaf_2826" /db_xref="GeneID:7259834" CDS complement(3034193..3036172) /locus_tag="Dhaf_2826" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_1631 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459286.1" /db_xref="GI:219668851" /db_xref="GeneID:7259834" /translation="MKLQPIIQAKLDKFKTSYQLADSDDILFEKFVNLTILKMHNQAA FSANADLLDDVCIGGANDTGIDGVCVKIDGRFVSSIDDIKSILEYNKNVEIEFIFIQS KHKEKFEQTAILKFLNGVKDFLDEKQYAPSNEDVKRWLDIKKFLFSDDVIACWKSQPT VRTYYVSMGTWCDDANITSVGERFKQDIALFNSYEKVYVYYIDASSLKNISDENDNSL SVNLKCIGSLPPAEIKDVSNFLIAVATADEFMKILTTKDGLFRSNLFDDNVRDYQGDT YVNLDISETLKNEPQNFSLYNNGVTIVCKTATSANGRILLESPQVVNGCQTCNSLYVA MKNGVDISEAVIFVKIIATQVDSLTNGIVKGTNRQNIVYDEAFEITKPFHKNLEDFFE SMKDSSGSVTLFYERRSKQHPNIPPYKKTVFKQLIQGFVSTFLSEPHNGHIHENKLLK LYENRIFVDSQSLLPYYVSALSLNRLEAYMRRNNSTQREFKNFKMQILFIFYLQNAGK AKDINREKDIDKYANDALNAINSADSDKKFKAAIDKFVELRESWIKEKGTAYKFAIKD SREFTDFVIEKLTKSNSETVALLPVGQVVKISIDRYGQYYGFISRNPNDIFFHSEKNH HLDFEEIVGKAVNYEILPAKESWQKEQAIKVNVLE" gene complement(3037318..3037710) /locus_tag="Dhaf_2827" /db_xref="GeneID:7259835" CDS complement(3037318..3037710) /locus_tag="Dhaf_2827" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: tte:TTE2219 LysM repeat-containing protein" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002459287.1" /db_xref="GI:219668852" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7259835" /translation="MNHPMNMQNGYMGQNQYFPQGGFATLDPNCCPGQVTMDAGQPYQ SCYGQESMHGMHHNPHHCCVPPCPPPCPPPCPPPAPEPVTYVVRKGDSVYKIAQQFGT TMQAIILANNLTNPDLIFPGQVFIIPNA" gene 3038117..3039142 /locus_tag="Dhaf_2828" /db_xref="GeneID:7259836" CDS 3038117..3039142 /locus_tag="Dhaf_2828" /inference="protein motif:PFAM:PF04392" /note="PFAM: protein of unknown function DUF534; KEGG: drm:Dred_2840 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF534" /protein_id="YP_002459288.1" /db_xref="GI:219668853" /db_xref="InterPro:IPR002038" /db_xref="InterPro:IPR007487" /db_xref="GeneID:7259836" /translation="MKKGSLRRMLGIGLSLVLALGLAGCGGTAPSTSETPQGTGQGSS EEKQVKIGIIQIVEHPALDAARQGFLDTLKANGYEEGKNLKLVYQNAQNDQSMLNSIA QQFATSDLDLILAIATPSAQAMASATDEIPILITAVTDPVEAKLVDSMDKPGGNISGT TDMNPIKEQLDLLKKLVPDAKTVGVIYNAAEVNSEVQVRIVKEEAPALGLEIVEATVS SSADVLQAAQSLIGKVNAIYVPTDNMVVSAAQSVVQVANENKIPLISGESSVVDAGGL GTIGINYTNLGAQTGEMALRILDGAKPADMPVEGQKNFDIVLNQEAIDLLGIEVPADI KSKATIK" sig_peptide 3038117..3038218 /locus_tag="Dhaf_2828" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.911 at residue 34" gene 3039186..3040115 /locus_tag="Dhaf_2829" /db_xref="GeneID:7259837" CDS 3039186..3040115 /locus_tag="Dhaf_2829" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: drm:Dred_1570 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_002459289.1" /db_xref="GI:219668854" /db_xref="InterPro:IPR001851" /db_xref="GeneID:7259837" /translation="MFSLKIVVGTLELGLMYAIMVLGVYLTFRVLNYADLSVEGSFTL GAATAATLIFQGYNPWLATAIAFFVGCIAGIFTGIFHTKFKITALLSGILTMTALWSI NLRVMGKANISLLKTRTIFTDFKNFPGMNQYGTLILGLITIIILGILIYLFLNTEIGL ALRATGDNELMIRSLGVNTDVMKILGLGLSNGLVAFSGSFVAQHQQFADASMGVGMIV AGLASVIIGEVLVGTSSIGRTILAVICGGIIYRTIIAIVLRLGLEPTDLKLLTAVIVL IALVSPSLKSKFSAFNGGILRKGDSYANSSESN" gene 3040090..3040893 /locus_tag="Dhaf_2830" /db_xref="GeneID:7259838" CDS 3040090..3040893 /locus_tag="Dhaf_2830" /inference="protein motif:PFAM:PF00005" /note="PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_1571 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459290.1" /db_xref="GI:219668855" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259838" /translation="MLTVQNLTKVFNKGTINEKKALDSLSLELAPGDFVTVIGSNGAG KSSLMNAIAGVFIPDNGEISIDGTPITKWASYKRSGLISRVFQDPLSGTAASMTIEEN LVMALRRGESRRLRWALNVNKRDYFRNELSKLGLGLEGRLTTKVKLLSGGQRQALTLL MATLQNPKLLLLDEHTAALDPKTAEKVMELTCKVAQSSKLTTLMITHNLEQALAVGNR TIMMHEGRIILDIRGVERQNMTIGRLLDMFEKASGVHMNNDRMMLAGTR" gene 3041551..3042960 /locus_tag="Dhaf_2831" /db_xref="GeneID:7259839" CDS 3041551..3042960 /locus_tag="Dhaf_2831" /inference="protein motif:PFAM:PF00078" /note="PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: swo:Swol_1977 hypothetical protein" /codon_start=1 /transl_table=11 /product="RNA-directed DNA polymerase (Reverse transcriptase)" /protein_id="YP_002459291.1" /db_xref="GI:219668856" /db_xref="InterPro:IPR000123" /db_xref="InterPro:IPR000477" /db_xref="InterPro:IPR013597" /db_xref="GeneID:7259839" /translation="MKVTEDGDLNHRQLRNEGELQRISAEQREDADACVPLKMIETDN TNTNEPNEELFEQILSSENLNQAYRQVKKNKGAGGIDGMQVDELLPYLRDHKDELLES LREGTYRPTPVRRVEIPKENGKTRKLGIPTVVDRLIQQAIAQILSPIFEKQFSESSFG FRPNRSAHDVLKKSQSYITAGYKYVVDMDLEKYFDTVNQSKLIQILSERIKDGRVISL IHKYLRAGIMVEGMFEESPEGVPQGGPLSPLLGNIMLNECDHELEKRGHRFVRYADDL MIFCRSRKAAQRTMEHIVPYIEKKLFLKVNREKSKVTHVNYVKYLGYSFYIYRGEGRL RIHPQSIRKLKDKIREVTGRSNGMGIEERKTKLNQVVRGWTNYFKLADAKSQLKEIDE WMRSRIRMVAWKQWKRIRSRYDYLKKAGVSKEKAWMWANTRKGYWRTAHSPILRIALP NKRFEQAGYLSFTGCYSAK" gene complement(3043677..3047855) /locus_tag="Dhaf_2832" /db_xref="GeneID:7259840" CDS complement(3043677..3047855) /locus_tag="Dhaf_2832" /inference="protein motif:TFAM:TIGR02785" /note="TIGRFAM: recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: gka:GK0682 ATP-dependent deoxyribonuclease subunit A" /codon_start=1 /transl_table=11 /product="recombination helicase AddA" /protein_id="YP_002459292.1" /db_xref="GI:219668857" /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR014016" /db_xref="InterPro:IPR014017" /db_xref="InterPro:IPR014152" /db_xref="GeneID:7259840" /translation="MNNPKWTPAQQAAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITD VDEQVDVDRFLVVTFTKAAAAEMRERIGKALDEALFGAAEPAQVEHLLQQRALLYRAS ITTLHSFCMELIRQYFYLIELDPAFRVADEAEADLLRQDTLEDLFEAYYGEETPAFQS LVDAFGTDRDDQPLMASILRLHEFAMSQVHPGEWLEHLPAAYDWHSLDDLMESPWGQV VRQGVRDKVEEGLILLERAYRLAELPGGPVHYLPVLEDDQSRLGFLREMAEKGTWSDI ETAFKSAAAFPGLPRGSKKNLPDSLIDEENSKRLREESKKARDEAKKKLEEIKNTVFS VPLTDQLPFLNKMGELVGTLAQVTQHFAREYQKAKRQRNCVDFSDLEHYALQLLAKDK QPTEIALKLQAYYAEVLVDEYQDINPVQERILQLVSRQEEGKANLFMVGDVKQSIYRF RMADPGLFLRKYGEFPHYQEGGGAAPNLVIDLNQNFRSRPEVIQGINYLFYQIMTEGA GEIVYDEQAALRPGAKFVSDGELRTAEGPIEVHLFDPKAIDLSLGQKRGAEDAATEVD SPAKGEGEEFEQNREPESGDDESSLEEAETARIEARLVAARIQKMVLEREFQIHDKEL GDYRPVQYADIVILMRSLASVASVYAEEFQKAGIPVYAETNSGYFGTNEVDTVLSLLK IIDNPRLDIPFAAVLRSPLVGMNGTELGKLRSLLPQGDFYETLVLTFWAGDAHRQEEG HEFYSEIREILGKHWESLPQLEVKVRHILETSPEIKEKVDAFFPKLQEWRHRSRRTSL ADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLYDRACRYEATNYRGLFRFLRFLEKF QSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVVFIAGLGKKFNTRSLSSQLLLHS HLGVGIPLIDIENQVRYPSVIQYAVKERLWQEALAEELRILYVALTRGKERLFLFGHQ HKLAEAINKWRSLALSCPDTAFPDGQLRGAKTYLDWLGPALVRHPEDLFKLGSFPTAS ELPDSSSQWKVILHDQIAGKGPVQEATSSQDEIILPDQETLGEREASEETEIPGETEA SGKTEIPGETKNSEETKTSEDKKNLEAQTPETADLDTKNLQEEVFRQLNWQYPYPEGV NQSAKTSVSELKRQSLWYMDNEYSSPSSSSSSSPSALSAPSFLRPQFIVSRKELTPAE RGTAVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAVSVSQ LKNLLDSTSGKRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQEHEAQV MDFKTDNLAGVPDPELVLTQRYGLQLGLYALAVERLLKVPVRECIIYATSLNREFVMQ REAVQAALESVVIV" gene complement(3047848..3051504) /locus_tag="Dhaf_2833" /db_xref="GeneID:7259841" CDS complement(3047848..3051504) /locus_tag="Dhaf_2833" /inference="protein motif:TFAM:TIGR02773" /note="TIGRFAM: ATP-dependent nuclease subunit B; KEGG: drm:Dred_1415 UvrD-like DNA helicase, C terminal" /codon_start=1 /transl_table=11 /product="ATP-dependent nuclease subunit B" /protein_id="YP_002459293.1" /db_xref="GI:219668858" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR014017" /db_xref="InterPro:IPR014140" /db_xref="GeneID:7259841" /translation="MRFIVGRAGTGKSTLCRQEIHKESQEHPEGLPLILLVPEQATHQ MEMSLAHDPQSGGILRAQVLSFRRLGWRVFSEVGGGGKAVIGEVGKRMLLRRLLLNHR SDLRVFARSATRPGMADLLAQAIAEFKIYRITPDQLRGIEDADELLLQKTHELAFLYE ELNKSLGTAARDPDDELNLVAGKISQAPFLQGAKIWVDGFKGFTPQELYVIQAMLGTA AEITVSLPLDPELLKAGTPRFKPGEELFYEPRQTYQGLVDLAREAKASISHVFLTETH RFEKAGLKHLERFYNAYPTQTFPGGDDSTAPDPLGIALFPAANKRAEVEGVARELRRL AREEGRTWRDCSVVTRDLPGYQGIIEQVFNAHEIPYFLDHKRPVIHHPLLELLLSAIE TVQKDWAYEPLFRCLKTDFFPCSKDRIDRLENYCLAYGIHGSAWKGNRSWSYYPDPNH KEETAGLNETRQIIYDLFSPFDQAIRPHPEAGGPSVTVAQITEAIYELLIRLKVPEHL QEWAEAAHSRGDLAEAQLQNQIWDAVIQVLDELVAGLGEEVMDLSDFAMILTSGLENL QLGLIPPGYDQVLVGSLDRSRNPETAVLFLLGANDGILPGKPSDEGVFDELERLRLES KGIMLAPKGKVQVYEEQYFIYTALTRAREQLYISYPLTDEEGRGLTVSPVIHRLKMIF PGLPEKYLSLDEEEPGALPHPYALLPAYALHLQKLRQGSSLSPLWQAIRLWFLSQTAA FPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRLVTSVSRLELFARCPFAHFAQYGLKL KERSNYRLSPPDMGQFFHAVLHDYAIALRERGLDWGELSKEQSWQLVNETAEPIALQL QNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQGVFLPMELEVKFGPQEALPPLEV PLSGGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKSREAHVSLNQIYHGLDLQLLAYLD AALQGAQILVSSSGLAEGSKGSEGSEGSEDSEDSTIHPAGFLYFPVLEPQLKSKTLLY PEQLEKDRIKAVKVKGYLLADRQVLLAMDRDLENSSLLGIKLTKSGEFKKGSPILTEE QFALLRKHLQHFLRCSGEALLEGDISITPYRQGKHTACQFCSYKPLCHFDPYLPENNY RNLPVIQDEEFWQRVQSQDSEQYPEQHPPTSVPGETSRRALQKDGGNSPRGQELIWLG EDEAGAGKEDDGHE" gene 3051630..3052214 /locus_tag="Dhaf_2834" /db_xref="GeneID:7259842" CDS 3051630..3052214 /locus_tag="Dhaf_2834" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbf:CLI_0139 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459294.1" /db_xref="GI:219668859" /db_xref="GeneID:7259842" /translation="MKKIIPWAILIFLVCLVFYPQPSRLADTTIPNMNPHVLNKEISL QLPATTQIAEHWLEDRQQLHYSAYLNDEPLGLRGYIQLWQIDDLEYYLQKSKEMSTFD FYTFSLDATHIGDFKGILNSWGASFGQAAKLSGKEYWLYTPNQKVLRIAFLTNDTSFN EEQLKVMGTILSSLSWLGEPTNAETLIEITGEHP" sig_peptide 3051630..3051707 /locus_tag="Dhaf_2834" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.584 at residue 26" gene 3052232..3052555 /locus_tag="Dhaf_2835" /db_xref="GeneID:7259843" CDS 3052232..3052555 /locus_tag="Dhaf_2835" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459295.1" /db_xref="GI:219668860" /db_xref="GeneID:7259843" /translation="MIKKARKMLTWAGLMLVMGFLLAGCGATPPATASGDLTPKQAAE LIYHDLVFHDVGVEKVTVTQCLFEDINTAVVDVTYSTHDGKNISQKATLIKLNGQWQI DGHDH" sig_peptide 3052232..3052333 /locus_tag="Dhaf_2835" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.916 at residue 34" gene complement(3052577..3053422) /locus_tag="Dhaf_2836" /db_xref="GeneID:7259844" CDS complement(3052577..3053422) /locus_tag="Dhaf_2836" /inference="protein motif:PFAM:PF02588" /note="PFAM: protein of unknown function DUF161; KEGG: hmo:HM1_0447 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF161" /protein_id="YP_002459296.1" /db_xref="GI:219668861" /db_xref="InterPro:IPR003740" /db_xref="GeneID:7259844" /translation="MKPWDVIKRIGKFIGIALGASMVAYSVQGFIVQAGLGGGGIGGI ALLLFYTLGLPIGIVNFVLNLPLFALGWKEVNRIFVAKTFFGIIIYSLALDFFQGIQP LALNDVFLSALYGGVLGGVGSGFVFRLGGSLGGTDIIAKVIQRRFGWAMGTTMLVINA LVIIASWAILGPKMALYTLVSMFTFSKTVDVISSGLPAKSVTIISNQSDQLIQRILQE LGRGVTFLHGQGGYSAAEKNVIICVVGISELGHLKRIVREEDPQSFIIVQTATEVVGQ GFALE" sig_peptide complement(3052577..3052681) /locus_tag="Dhaf_2836" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.711) with cleavage site probability 0.393 at residue 35" gene complement(3053889..3055208) /locus_tag="Dhaf_2837" /db_xref="GeneID:7259845" CDS complement(3053889..3055208) /locus_tag="Dhaf_2837" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: rci:RCIX301 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459297.1" /db_xref="GI:219668862" /db_xref="GeneID:7259845" /translation="MMKKDAYNLWEQEGDLEKMKLFFHETRPDSEQKERIKQLTLEKI RVEELNAAAVGESPRNILIPDLPPKESWGGRAQRRLKSFWWRWQWKLALPVAAVVMFA FIGIGMESLKDFPKGFGAGFTSNSSANTAPQDSGSRENISMAAPKESAQKRAPESYGA GGAPEVMIGMSDMAAEERGALKESPQSAPSTQNAPIMPIPEPQAPPAADDLAKKITYT LNASIQVEDVSQALARVTEEITSLGGYVVNSSESSYQNNSSAYATFKIPSQQLEGFKG RLEEYGKVLNNSTDSLDVTNEYYDTQSKLRNLQAQETRYLEILKEAKTVDEILHIESY LSSTRMQIEQLQGQVKLWDHQVAYSTVSINFQNTPNPVSVDEPWRPVAWANTWQAAQD AVLKTISSTWNGINYLVVGIAYALPYLLGGAVLFGVYKTVKKVRRPK" gene complement(3055205..3055714) /locus_tag="Dhaf_2838" /db_xref="GeneID:7259846" CDS complement(3055205..3055714) /locus_tag="Dhaf_2838" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sde:Sde_2365 sigma-24 (FecI-like)" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459298.1" /db_xref="GI:219668863" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259846" /translation="MQADSFDEIYEELFPILYRFVRLRVPQSDVEDVTAEVITKIWRA LPNFEGKSTLKSWALRIAYHHIADFYRTRKGKGMQIVSLSEEIKSTQATDDHSDHLLT VLSVSETLAKLSEQQVAVIQLRLIEGFSAIEVAQILGITQQAVDSLLYRAKKSFRKYY ELENAGGIR" gene complement(3055869..3057305) /locus_tag="Dhaf_2839" /db_xref="GeneID:7259847" CDS complement(3055869..3057305) /locus_tag="Dhaf_2839" /inference="protein motif:PFAM:PF00614" /note="PFAM: phospholipase D/Transphosphatidylase; KEGG: amt:Amet_4655 phospholipase D/transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase D/Transphosphatidylase" /protein_id="YP_002459299.1" /db_xref="GI:219668864" /db_xref="InterPro:IPR001736" /db_xref="GeneID:7259847" /translation="MIKLIKLMIGSALLALSLALLIICLEKKNPEKTAAWLSFLALNP LLGMMIYLVFGCTPLKKSLFRSKHMPGEQLPALAHQQKQAFSENEIYIQESIDAKGLS RLLLGKAFAPLSRNNSLTLLHNGDAKFAALLEDLEKAQDHIHMEYYIFHDDAIGRRVQ QILIRKAGEGIKIRLMFDGLGSRSLAKNFLRELRAAGIELQWFLPLRFPRAFLTLNYR NHRKLVVIDGRIGYLGGINIGDEYLSRSAKYGFWRDTHLRLEGTSVHTIQETFFNDWY YLTGEIHRDPRYFPKEREDGEMLVQIIGGGPDSHYESIKELFFTMLSTAQKEIVVTTP YFIPDESMIMALKTAASRGVAVKIILQGKPDHKLPYLASSSYFRDLIPSGVEIYRYQK GILHSKVLTVDQEIGVVGSANFDIRSFQIDFELSAVIFGSDFAEKLVRDQEQDLQDSL QITQQDLQSRTPLLSLQIALARLLSPLL" sig_peptide complement(3055869..3055949) /locus_tag="Dhaf_2839" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.910) with cleavage site probability 0.240 at residue 27" gene complement(3057391..3057933) /locus_tag="Dhaf_2840" /db_xref="GeneID:7259848" CDS complement(3057391..3057933) /locus_tag="Dhaf_2840" /inference="protein motif:PFAM:PF02417" /note="PFAM: Chromate transporter; KEGG: drm:Dred_1337 chromate transporter" /codon_start=1 /transl_table=11 /product="Chromate transporter" /protein_id="YP_002459300.1" /db_xref="GI:219668865" /db_xref="InterPro:IPR003370" /db_xref="GeneID:7259848" /translation="MIKKLWEVFIGCARATNLGFGGGPAMIPLIQREAVTRYKWLTDE EFADALAIGNSLPGPIATKLASYMGYKVAGWPGALAGLLGTLLSTFVIVILGDLLIRY SHTPALSAALTAVRPVVVVLIAQSAYDLGKKAFPKKYRSTWAVAVVALAILFMTKIHP GILVICAMIFGYIAYGRKKD" gene complement(3057952..3058473) /locus_tag="Dhaf_2841" /db_xref="GeneID:7259849" CDS complement(3057952..3058473) /locus_tag="Dhaf_2841" /inference="protein motif:PFAM:PF02417" /note="PFAM: Chromate transporter; KEGG: drm:Dred_1337 chromate transporter" /codon_start=1 /transl_table=11 /product="Chromate transporter" /protein_id="YP_002459301.1" /db_xref="GI:219668866" /db_xref="InterPro:IPR003370" /db_xref="GeneID:7259849" /translation="MEQLLDIFLAFFRASNLAFGGGPAIIPLIQAEVINHGWMTLEQF SEGLAIATSLPGPIAALLSGYVGYHVAGWPGVLAALLGTLALTSILVIALTGFLMKHN NSPVLKGALTGVRPLVAVLVAKTAFDMGLSAFPSMWSWVIAGAAMICLYKLKLHPGIV IILSMVFGLLVFQ" gene complement(3058672..3059181) /locus_tag="Dhaf_2842" /db_xref="GeneID:7259850" CDS complement(3058672..3059181) /locus_tag="Dhaf_2842" /inference="similar to AA sequence:KEGG:Clos_2541" /note="KEGG: aoe:Clos_2541 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459302.1" /db_xref="GI:219668867" /db_xref="GeneID:7259850" /translation="MQVQLSQKEQMLLKDLKGHEELCVEKYSKYAKEAECSNLSQMFQ NLASREQQHYNTISQIMTGQIPSMNQGQGQQSQGQQAQGMQGQSGSQGLSGMQSQGSN SYSQKDFNMLSDMLATEKYVSGTYDTSIFEFQDTNLRQILNHIQKEEQEHGEEIFNYM HSHGMYPVQ" gene 3059352..3059558 /locus_tag="Dhaf_2843" /db_xref="GeneID:7259851" CDS 3059352..3059558 /locus_tag="Dhaf_2843" /inference="protein motif:PFAM:PF04024" /note="PFAM: PspC domain protein; KEGG: mba:Mbar_A0475 stress-responsive transcriptional regulator" /codon_start=1 /transl_table=11 /product="phage shock protein C, PspC" /protein_id="YP_002459303.1" /db_xref="GI:219668868" /db_xref="InterPro:IPR007168" /db_xref="GeneID:7259851" /translation="MEKRLYRSGREKMLAGVCGGLGEYFDVDPTLIRLAVVIAIFGAG MGFFAYLIAWIVIPKNPDHRYLNP" gene 3059710..3060015 /locus_tag="Dhaf_2844" /db_xref="GeneID:7259852" CDS 3059710..3060015 /locus_tag="Dhaf_2844" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459304.1" /db_xref="GI:219668869" /db_xref="GeneID:7259852" /translation="MYRMSEEQQQKVFTNFKKVIDKQNAGLINKELYYHLNLNCNFVA HFNLQGFREAYSGENFREFVDYFNPASPSSQWLEAPEISADFIPLNQAMVDYASPNH" gene complement(3060158..3060421) /locus_tag="Dhaf_2845" /pseudo /db_xref="GeneID:7259853" gene complement(3060462..3060860) /locus_tag="Dhaf_2846" /db_xref="GeneID:7259854" CDS complement(3060462..3060860) /locus_tag="Dhaf_2846" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_2687 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459305.1" /db_xref="GI:219668870" /db_xref="GeneID:7259854" /translation="MLLIIKINFFAFLYALLLFIETELLLNSYRLHRMLSWFNVKTNV LLGCVIFIVLTIIFYSITTKYLDTGKFRYFLTVLWIPYYIILVLLFAHLVPITYPGDE PLGGVAFIILGMFFIFPLYVAAITAIGTKD" gene 3060944..3061819 /locus_tag="Dhaf_2847" /db_xref="GeneID:7259855" CDS 3060944..3061819 /locus_tag="Dhaf_2847" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: csc:Csac_1491 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459306.1" /db_xref="GI:219668871" /db_xref="GeneID:7259855" /translation="MKKIPKLFILMVLGIFLFSSVAVAAPTTQVHTDEQFTQESNVYT QNELTEIREIHAKAIKEDFVILNPDGTITLNTDAATLEVDVNIFTEYAQSIENLNDLI KLGVVSISNEFEVTAKTQDEVTKIIVERDTQLLKSGIYSGNRFDPQPNNLIVQSSPDV PTLYAFSIATTNKRTLTDYYNTQLIYNPYGALSATTGFFVAKVQPKGPWDYKSVPGYT PYYKEWWAVQRYGTSVKTSEWFGNYNYGFTGKVIFPLSVLLDAGDAVSILTGHGFDDA QDKADITQGYNENPS" sig_peptide 3060944..3061018 /locus_tag="Dhaf_2847" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" gene complement(3061991..3063811) /locus_tag="Dhaf_2848" /db_xref="GeneID:7259856" CDS complement(3061991..3063811) /locus_tag="Dhaf_2848" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2335 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459307.1" /db_xref="GI:219668872" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259856" /translation="MSTLISEELEHKAGLSGQGGTILRLLAYLKPHLKPLAFAFALLV AGTAADVAGPVLIKIFLDDYLTPGRLEPLALTILGGGYLLLVILASFLQYHQLVRFNK IALLVIQQIRVDIFTKVQYLAMSVFDRTPAGALVSRVTNDTEAIKELYIGVLSTYVQN IVFLLGIFIAMFSLDVRLAAFCLVLLPVIVVLMQIYRRISSKIYRISRAELGRLNAIL NESIQGMNIIQIMRQEETFQKKFAGINEKYYGAAIANIKLESTLMRPAVDLLYTLALI LVLGFFGLESIIGPVEVGVLYAFINYLDRFIDPVNMILMRLSQLQQAIIAAERVFEVL DDGRTTTALGLNAVQEAGDPPAPGIEKGEIEFRNVSFSYDGVTEVLKNISFTVHPGET VALVGHTGSGKSTISNLLMKFYPVNQGEILIDGISLHDFSQEELRTQIGLVAQDPFLF VGDIANNIALNRPAVGEREVKAAAEFVEADQFITKLGQGYQEPVSERGSTLSSGQRQL ICFARTIAGEPKILILDEATASVDTETEEAIQTALNKMRQGRSTIAIAHRLSTIQDAD LILVLHQGQIVERGNHNELLAQKGLYYKMFLLQQGAGKGY" gene complement(3063808..3065595) /locus_tag="Dhaf_2849" /db_xref="GeneID:7259857" CDS complement(3063808..3065595) /locus_tag="Dhaf_2849" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2336 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459308.1" /db_xref="GI:219668873" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7259857" /translation="MRLFIDLMWFFKKEKLSYITGIMLLIVLAAINLCPPYIVGRVVD GVTNRTLTPEILWPWLLILCGLGILSYILRYSWRILIFGAAARLSRLLRQQLFKHFTR MSPSFYQKYRTGDLMAHATNDIQAIETTAGMGVLTLVDSLVTGGFVVFSMAAFLSWKL TLITLLPMPVMAWVSSYYGTLLHERFFKAQEAFGDLNDKVQENISGVRVVKAFGQEEV EIESFRRLSDDVVKKNQAVAVVDSLYDPSIMLIVGLSFFLAVSFGAYEVIHLRLTLGQ LTQFTLYLGQFIWPMLAFGWLFNIMERGRASYDRVQALLGVESEVQDQVSLQGAPDGS RAELRQSVKGDIYCALEQFTYPGQTKPELKRIHFTLKEGQTLGIVGKTGSGKTTLFRV LLREFAGMTGEIRIGGVSIEEIPLDSLRGIFGYVPQEHFLFSTTLAENIALGKPQAQL SEIEKAAKTACIHEDIQRFEAAYGTLVGDRGVTLSGGQKQRISIARALLLDPKILILD DSLSAVDAKTEKQILLELKGNRSQKTTLISAHRLSAVEHADLILVLQNGEIIERGSHA ELMEHQGWYAETYQAQQLESLIEEGGGLA" gene complement(3065833..3065970) /locus_tag="Dhaf_2850" /db_xref="GeneID:7259858" CDS complement(3065833..3065970) /locus_tag="Dhaf_2850" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459309.1" /db_xref="GI:219668874" /db_xref="GeneID:7259858" /translation="MSKPKEKKNAVEVIRKKDLNPGDKIPPFAAHDNDKIGQGHSKER T" gene 3066117..3066419 /locus_tag="Dhaf_2851" /db_xref="GeneID:7259859" CDS 3066117..3066419 /locus_tag="Dhaf_2851" /inference="protein motif:PFAM:PF02627" /note="PFAM: Carboxymuconolactone decarboxylase; KEGG: mta:Moth_1895 alkylhydroperoxidase AhpD core" /codon_start=1 /transl_table=11 /product="Carboxymuconolactone decarboxylase" /protein_id="YP_002459310.1" /db_xref="GI:219668875" /db_xref="InterPro:IPR003779" /db_xref="GeneID:7259859" /translation="MALPPFLKPLAGYDPTFAQEIGNIAALAFQENSLDEKTRTLIAL ALDTVLGASAGVASLANQARQLGISEQEIADTLRLAYFTAGCSVLTTSFAAFEKKE" gene 3066424..3066714 /locus_tag="Dhaf_2852" /db_xref="GeneID:7259860" CDS 3066424..3066714 /locus_tag="Dhaf_2852" /inference="protein motif:PFAM:PF06961" /note="PFAM: protein of unknown function DUF1294; KEGG: tpd:Teth39_0971 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1294" /protein_id="YP_002459311.1" /db_xref="GI:219668876" /db_xref="InterPro:IPR010718" /db_xref="GeneID:7259860" /translation="MTDLLNLWPLGMAYLIINAIGFLLMGWDKNQARNRGRRIPEKWF FILAFLGGALGAWLGMQIFRHKTRHTTFVLGIPLLLVWNVLVMYVLGQHLSL" gene complement(3066796..3067308) /locus_tag="Dhaf_2853" /db_xref="GeneID:7259861" CDS complement(3066796..3067308) /locus_tag="Dhaf_2853" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_1138 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459312.1" /db_xref="GI:219668877" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7259861" /translation="MNISYRVPAADEMEKISEQIMISYVSAYDGLMDRAYLSSLEADH WLPILEESAGKGDICLIAESEGKIIGSTVFSIVHEGKDIYAEWHAFYLLPEYISLGLG HSFYQRIEEEMLKQGCEFCILEVLSSNQRAIRFYLSHGFSRTETFTVQEYGMILSCDK MRKDFKGYPV" gene complement(3067340..3068512) /locus_tag="Dhaf_2854" /db_xref="GeneID:7259862" CDS complement(3067340..3068512) /locus_tag="Dhaf_2854" /inference="protein motif:PFAM:PF06081" /note="PFAM: protein of unknown function DUF939; KEGG: drm:Dred_1438 membrane protein-like protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF939" /protein_id="YP_002459313.1" /db_xref="GI:219668878" /db_xref="InterPro:IPR010343" /db_xref="GeneID:7259862" /translation="MREGGFSLFSKLKTWFGPRILKTGLGVTIAILICQIASVGPASF AAITVVINMQPSVSKALSNAWEQIAVNIVAVVLAIAVGLTVGSNPYIIGLVVILMIAA SNRMGWHGVNLGIVSIIFILDAPPDQFLEHAISRALCIFIGLVVALTINRVLAPPRYK KNFRKKLYALVYDSSEFFLDSLKHYVDSTSFNSYEKVKPTLLEKQLEEVTELYEHARE EFSSKDKMQLMERLLELCRGFIERGENIEEMTRQRVKRRQAPDSPPQMGQGISKEFQN LLDYILVGKGILGALRDSLYLSFTYVPATPLQTLDQDFWNEFDLRMDQWQKHFSGVYF LRATMEVAVVATEMRWASKRMRSSYELSIKKNDLQPLEESKQFLQENPGVSGGPKE" sig_peptide complement(3067340..3067477) /locus_tag="Dhaf_2854" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.863) with cleavage site probability 0.829 at residue 46" gene complement(3068600..3069784) /locus_tag="Dhaf_2855" /db_xref="GeneID:7259863" CDS complement(3068600..3069784) /locus_tag="Dhaf_2855" /inference="protein motif:PFAM:PF00557" /note="PFAM: creatinase; peptidase M24; KEGG: dol:Dole_2186 peptidase M24" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_002459314.1" /db_xref="GI:219668879" /db_xref="InterPro:IPR000587" /db_xref="InterPro:IPR000994" /db_xref="GeneID:7259863" /translation="MFSKSEYERRLKGFQAILAQQEIEGALLVQRADTLYFTGTAQNL HLYIPRTGKPLLLVYRNMERVLAESPWEAFPLTGMSKLPELIMEHGHPLPKVMGLEYD VLPVANYLRYEKLFSQTKLMDISYPLRLFRAVKSAEEIARLEENGRVYAQLLEYASTV LRPGMTEIELEGLLEAKARTLGHETMLRTRAFGFEFHFGGVVAGPQGAISGYFDGPVT GLGASYAHPLGPSHSPIQAGDMVMMDLVIAQEGYQADATRMLVIGEPSQKMAEAYQLS CEIQERARLALIPGRKTGDVYAELVDWVERETPYAGNFMGYGQNRVRFIGHGVGLELD ELPTISKGAQEILAPGMTIAVEPKFIFPGEGAVGVEDTLVIEGEKGARFLTHAPKSIL RV" gene complement(3069893..3070675) /locus_tag="Dhaf_2856" /db_xref="GeneID:7259864" CDS complement(3069893..3070675) /locus_tag="Dhaf_2856" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase" /codon_start=1 /transl_table=11 /product="Enoyl-CoA hydratase/isomerase" /protein_id="YP_002459315.1" /db_xref="GI:219668880" /db_xref="InterPro:IPR001753" /db_xref="GeneID:7259864" /translation="MTYSNILVDYQEQIALVTIDRPKALNALNTLTLQELSQVVEDLA NNSSVRVVILTGSGEKAFVAGADIAEMNMKTPLEARTFSQLGQKLMNQIESLPQPVIA AINGFALGGGLELAMACDIRLASEKARFGQPEVNLGIPAGFGGTQRLPRLVGSGRASE ILLTAELFDAQEAFRMGLVNRVYPKEELQEQALAMARKIAAKAPVAIQLTKSAIYKGA NMDLISGQDYEAEVFALAFHTEDRKAGFKAFLEKSQTEFQGR" gene complement(3070686..3071864) /locus_tag="Dhaf_2857" /db_xref="GeneID:7259865" CDS complement(3070686..3071864) /locus_tag="Dhaf_2857" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="KEGG: cbe:Cbei_0411 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_002459316.1" /db_xref="GI:219668881" /db_xref="InterPro:IPR002155" /db_xref="GeneID:7259865" /translation="MREVVIVSAVRTPLGSFGGALENFTGAELGAIVIKEAIKRAGIL PAQVEEVIMGNVLSAAAGQNPARQAAIKAGIPQEVPAWTLNKVCGSGLKSVICGAQAI LAGDADIIVAGGMECMSSSAYALPKARKGYRMGNDSLVDTMIMDGLTDAFHNIHMGLT AENIAEQFQISREDQDALALRSQNRAEAAIQSGLFDEEIVAVEIPQKRGEPLVFSQDE FPRFGTTADTLTKLRPAFKKEGTVTAGNASGINDGAAAVVVMSKEKAEELGLAVLAKI TSWASAGVDPLIMGTGPIPATRKALAKAGLTIADIDLVEANEAFAAQAAIVTRELGLD VEKTNVNGGAIALGHPIGASGTRVLVTLLHELKRRDGQRGLATLCIGGGQGVSLIVER" gene complement(3071920..3073260) /locus_tag="Dhaf_2858" /db_xref="GeneID:7259866" CDS complement(3071920..3073260) /locus_tag="Dhaf_2858" /inference="protein motif:PFAM:PF02550" /note="PFAM: acetyl-CoA hydrolase/transferase; KEGG: drm:Dred_1489 acetyl-CoA hydrolase/transferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA hydrolase/transferase" /protein_id="YP_002459317.1" /db_xref="GI:219668882" /db_xref="InterPro:IPR003702" /db_xref="GeneID:7259866" /translation="MNSIIEEYQKKLTTPEKAVSVVKSGDWVDYGSFTGQPVVLDKAL AARKDELEDVKIRAVTAVRMPEVVKVDPEARHFVYNNWHFSGLDRKLHDQGLCWYSPI IYNELPSYYRRFLEVDVAMIPVAPMDEKGFFNFGPQVSHTKAMLEKAKIIIFEVNPKI PRCLGGLEEALHISEVDYIVETEWDLPQIQPVPPTELDNRIAGFIMPELVDGSCIQLG IGGMPNAMGKIIAQSDLKDLGVHTEMMTEAFVEMVEAGRVTGARKQIDRYKLTYTFSM GTQKTYDFLHNNPSCAIYPVDYVNNPWIIAKNDKVIAINNCVEVDLFGQVCSESSGTR QISGTGGQVDFTLGAYHSQGGKSFICLESTYKAKNGEIRSRINPILTPGAIVTTHRAM VNYVVTEHGIVNLKGKSTWERAEALISIAHPDFRDNLIKDAEKMGIWRRTAKLA" gene complement(3073371..3074009) /locus_tag="Dhaf_2859" /db_xref="GeneID:7259867" CDS complement(3073371..3074009) /locus_tag="Dhaf_2859" /inference="similar to AA sequence:KEGG:Swol_1911" /note="KEGG: swo:Swol_1911 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459318.1" /db_xref="GI:219668883" /db_xref="GeneID:7259867" /translation="MSNNNGGWANPSPAGLVALGVACFTFFALLSGRVTAGAMPLLGC WLIGGFITQVIVGAIELKEGQILGGNVFLYFSAFFMLVGGLEFFVKYFAAAQQWSIPL DTRIDGWAWIVLSFCLVLWTPAYFKSTSVLTMIVILIDIAVVQVAFLDLGVLSPSFKP FAAYALLFAGILAMYLSAALILNTTYGKTILPLTKPWVKEKTAAPVGNAKKM" sig_peptide complement(3073371..3073481) /locus_tag="Dhaf_2859" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.856 at residue 37" gene complement(3074076..3076175) /locus_tag="Dhaf_2860" /db_xref="GeneID:7259868" CDS complement(3074076..3076175) /locus_tag="Dhaf_2860" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: chy:CHY_1598 putative iron-sulfur-binding reductase" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002459319.1" /db_xref="GI:219668884" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259868" /translation="MATRELYWNIEYHWLIYPMLVIALGFFCYGFYQRYQLWQIGRPE NRRQNIGKRIGDVLLYGLGHKRILKDAFPGIMHLLMFWGFALLFFATMIVALQADLGI NMFKGGLYIFIKVTANAFGLLAIIGCLMAIWRRYGQRPDRLDNKKDDAFVLALILTIL VTGFVIQAVRMAAVEDPWGMYAFIGYAMAPLFKGLSNSTLEGIHAFLWWFHFILVMVF FGYFPYSKLSHILLAPANQFLRHHGPIGIPENIDFEDESLETYGKSKLGEFSWKTLFN TDACLRCGRCQDNCPAYLSGKHLNPKKVIQDMGAYLEEMGQALKTYRAANPALAVAGS GNEVAAAAEADTGAQVPSEEELGLRSLIGDVIAEDDLWDCTTCRSCEEQCPIFVEHVD KTIDMRRNLVLMESRFPAEAQLAFRNMENNSNPWGIGWSSRGDFLQSVGCSTIEENPD AEILYFPGCSGSFDARNQKVSAALVKLLKAAQVNFAILGSEEKCCGDSARRLGNEYLF QALAQENIETMNGYGVKTIVTQCPHCFNTLKNEYPEFGGNYRVLHHTEYLNELLAAGR LKLHKAGSGSERGGNSQSVTYHDSCYLGRYNTIYTEPRTLLQAAGFRITEMSRHHEKS FCCGAGGGRMWLEEHQGQRINEMRTDEAMAAGAEVVSTGCPFCLTMISDGIAAREAVE SVKVLDIAEILVERISE" gene complement(3076341..3077330) /locus_tag="Dhaf_2861" /db_xref="GeneID:7259869" CDS complement(3076341..3077330) /locus_tag="Dhaf_2861" /inference="protein motif:PFAM:PF01012" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pth:PTH_1553 electron transfer flavoprotein, alpha subunit" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_002459320.1" /db_xref="GI:219668885" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:7259869" /translation="MPKGIWVFVEQAEGKVRKISLEILSQGRKIADQTGEPLAAVIAG DGIAGLAQEAAGYGADQVFLLNSPQLAQYTTGAYTSALAKLIQEKEPQAFLLGHTAVG KDLAPRLAQRLGVGLASDVIDIEVDPEKFLLYKRPVYTGSAYSFVEIVSRPSLATVRA KSFPVAEPDPARQAEVIEAAVTIDPEDLKVIVKDVAYLVTSRPALTEADFVISGGRGM KGKENFALLEELADVVGGAVGASRAAVDSGWIDNQFQVGQTGSIVAPTLYIACGISGA IQHIAGMGASKVIIAVNKDPEAPIFNVADYGIVGDLFEVVPLLTEEFKKLVNG" gene complement(3077362..3078135) /locus_tag="Dhaf_2862" /db_xref="GeneID:7259870" CDS complement(3077362..3078135) /locus_tag="Dhaf_2862" /inference="protein motif:PFAM:PF01012" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pth:PTH_1552 electron transfer flavoprotein, beta subunit" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_002459321.1" /db_xref="GI:219668886" /db_xref="InterPro:IPR014730" /db_xref="GeneID:7259870" /translation="MNIVVCVKQTIDTEAKIVLNSEGKIDANGVTLVINPLDEYAIEE ALRMKEKFGGEVTVITLGGDQATATIRSALAMGADKAIHINDPALGEVDEGIAAAILA KTIETIPYDIILAGVMDTDHGSAQVAVRMSEKLGLPSISSVTKLDINGTQATALRVID GGLATLEVALPAVITVVQGINEVRYPSVAGIMKAKKKPLTPLKLSDIGLDASGLALQA KVTQYTLPTPRQGGRILPGEAAEATHELARILREEAKVL" gene complement(3078163..3079305) /locus_tag="Dhaf_2863" /db_xref="GeneID:7259871" CDS complement(3078163..3079305) /locus_tag="Dhaf_2863" /inference="protein motif:PFAM:PF00441" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_002459322.1" /db_xref="GI:219668887" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7259871" /translation="MIFELSEDHVMMRKMVRDFAENECAAGAEERDEKEEFPREIWNK LAELGLAGITFPEKYGGVEADYLSYAIAVEELSRVDASVGVTVSAHSSLCANPIYLFG TEEQKQKYLVPLASGEKMGAFGLTEPMAGSDASGTRTTAVKDGDDYIINGTKIFITNA YEADTYVVTAQMDKSKGNKGIAAFILEKGMPGFSFGKKEKKMGIRSSATYELVFDNVR VPGENLLGQEGQGFKIAMVTLDFGRIGIASQALGIAQGAYEQARKYAKERVQFGQPIA QFQANQFKLADMATQIEAARLLVYQAAYLATQHKPVSKASAMAKLHASETAMWVTTQA VQMHGGYGYTREYPVERMMRDAKITEIYEGTSEVQRIVIGSHILKE" gene complement(3079371..3080210) /locus_tag="Dhaf_2864" /db_xref="GeneID:7259872" CDS complement(3079371..3080210) /locus_tag="Dhaf_2864" /EC_number="1.1.1.157" /inference="protein motif:PRIAM:1.1.1.157" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: drm:Dred_1780 3-hydroxybutyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxybutyryl-CoA dehydrogenase" /protein_id="YP_002459323.1" /db_xref="GI:219668888" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="InterPro:IPR006180" /db_xref="GeneID:7259872" /translation="MKTIMIIGAGQMGSGIAQVAAQAGYTVILNDIKEEYVARGLKGI EKNLDRSVEKGKLTAEEKSKILGQLQASVSLQDGVLADLVIEAAVENMAIKHDIFQTL DRVCPEHTILASNTSSLPITEIGACTKRPDKVIGMHFMNPVPVMKLVEIIRGLATSDE VYTEIENLSVAMGKTPVEVNDAPGFVANRILIPMINEAIWTLNEGIAKPEAIDNVMKL GANHPMGPLALADLIGLDTVLAICDVLHEGLGDKYRPCPLLRKYVKAGWLGRKTGRGF YTY" sig_peptide complement(3079371..3079430) /locus_tag="Dhaf_2864" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.880) with cleavage site probability 0.376 at residue 20" gene complement(3080207..3081376) /locus_tag="Dhaf_2865" /db_xref="GeneID:7259873" CDS complement(3080207..3081376) /locus_tag="Dhaf_2865" /inference="protein motif:PFAM:PF00441" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_002459324.1" /db_xref="GI:219668889" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7259873" /translation="MNFNLTEDQKMMRKMVRDFVEEEVIPQAAHTDETHEFPLALVHK MRELGLLGIPIPEEYGGAGSDFTSYTLALEEIARGCASTAVIMAVHTTLGTFPIYYFG NEEQKQKYLPKLAKGEMLGAFALTEPNSGSDASSLVTTAKRRGDHYVINGSKRFISNT GYAGIYTVLASTDRTKGSRGITAFLVDADTPGLIIGKKEKKMGLHGSSTRELIFEDMV VPVENRLGEEGQGFKIAMALLDDGRIGIGAQAVGIAQAAFEAALAYAQERVQFKQEIM NFQGIQFMLADMAAQLEAARLLVYQAAVRRVEGVPYSKEASMAKLFASEMAVKVTNDA MQIFGGYGYTREYPIERYLRDAKITQIYEGTNQIQRIVIAKHLRNKNYDMERRTL" gene complement(3081726..3083837) /locus_tag="Dhaf_2866" /db_xref="GeneID:7259874" CDS complement(3081726..3083837) /locus_tag="Dhaf_2866" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: swo:Swol_0792 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459325.1" /db_xref="GI:219668890" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7259874" /translation="MNGFISSGLSLLDSQELILSSLYLDEETLLADALQIILKEERTH LPVVSKEKKFLGVLGTADIMESLSQGKFAPKAPITSYIRPVEWLLPEENSLLFNFNVL ITEGWPTAFVVDSKGEYQGEFKFHDNLFLLYQLLNDLDFYISQTIEAVHNAVVAIDAQ GRIVFFNPSAEKLLGFHAEEVLGKPIKNFFPDSLTFKALATGEELRGIPMSYGELNTK ADFLPIILGHKVLGAVAVFKDITELEEVSHRLNSNEKLMATLEAVVENSYEGMVVIDD QENIVLMNQFFLDVIGVKVQDVIGKKINDISPNSSLPQTLKSGKAQFGETWHLKGRDF IIMRVPIEREGKVVGALAKTLFKNMEIAKMFAKKVMRLEENLAYYKEELGKFHSSQFV FDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIK VNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAK LLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLP PLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESITHLCAYDWPGNIRELENILERA IVICDEAWILPKHLALPGVMETITLGAEQTLEYALQAAEREILDKTLRRVQGNKVQAA RILGIHRSVLYKKLAKYNIQG" gene complement(3084035..3084274) /locus_tag="Dhaf_2867" /db_xref="GeneID:7259875" CDS complement(3084035..3084274) /locus_tag="Dhaf_2867" /inference="similar to AA sequence:KEGG:PTH_0422" /note="KEGG: pth:PTH_0422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459326.1" /db_xref="GI:219668891" /db_xref="GeneID:7259875" /translation="MPISTNRIIKLSFRTSGGKAAGITLSNPKQGLTKEVVQDVMNTI LAKNAFITASGELVGIKDIKITDTVTEDLYDPLEP" gene complement(3084327..3084554) /locus_tag="Dhaf_2868" /db_xref="GeneID:7259876" CDS complement(3084327..3084554) /locus_tag="Dhaf_2868" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: drm:Dred_3085 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002459327.1" /db_xref="GI:219668892" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7259876" /translation="MAVLAIPLTSTLTVKCETGITPSGSPVIRKKSIPGLKSTVTDED LHEIATALFSLVADQVVDITVSRNSQLLEEE" gene complement(3084652..3085506) /locus_tag="Dhaf_2869" /db_xref="GeneID:7259877" CDS complement(3084652..3085506) /locus_tag="Dhaf_2869" /inference="similar to AA sequence:KEGG:Bsph_3778" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459328.1" /db_xref="GI:219668893" /db_xref="GeneID:7259877" /translation="MNPINTERTTSNIAAEILIIRQHTCKILLVSAVEIGKRLKEAKA LLPHGEWLKWLAESVSYSRSTAGNLMRLHGEYGPRLLTSSESDENCQSVGNLTYTQAL ILLGLPEEEREQFMAEHDVAGMSKVELQQAVQERDQAREERDRAIGEKSELEKEVADK DSRITELTTRNAGLEQEVSDYKQKDEARPEKVVPQPKEPAVAKEESPSARKIADVQFT IHRDNMLNAYEGLLKTLAGLADTDPQLKEEYRETAYKMMENMTKRLKVYPPAITTNLK IKKITTTL" gene complement(3085717..3085968) /locus_tag="Dhaf_2870" /db_xref="GeneID:7259878" CDS complement(3085717..3085968) /locus_tag="Dhaf_2870" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: bbt:BBta_4875 HTH-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002459329.1" /db_xref="GI:219668894" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7259878" /translation="MARSTKIALENRDKYIALGLNIAYYRKREGMTQDQLAEKAGMSR SYLGEIEAPNMITTMSLEVLFNIANVLRIKPSKLLEFRD" gene 3086113..3086301 /locus_tag="Dhaf_2871" /db_xref="GeneID:7259879" CDS 3086113..3086301 /locus_tag="Dhaf_2871" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459330.1" /db_xref="GI:219668895" /db_xref="GeneID:7259879" /translation="MPNYKEMYRILFQETTKAITALQKAQQLAEELYIAYDITDNLIV IGKEADDTSEEETHPLQD" gene complement(3086410..3086721) /locus_tag="Dhaf_2872" /db_xref="GeneID:7259880" CDS complement(3086410..3086721) /locus_tag="Dhaf_2872" /inference="similar to AA sequence:KEGG:Msm_0048" /note="KEGG: msi:Msm_0048 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459331.1" /db_xref="GI:219668896" /db_xref="GeneID:7259880" /translation="MKKVKISVIRKEFYPEFADEYLTDGAAVGPCLLLNVGDEFIYDG GAEMPLNFCPWAWIDIYRGVNALSAGASYVPWNKKDGLQILCCTDGIRPVIFKVESLN D" gene complement(3086776..3087294) /locus_tag="Dhaf_2873" /db_xref="GeneID:7259881" CDS complement(3086776..3087294) /locus_tag="Dhaf_2873" /inference="similar to AA sequence:KEGG:BLi00277" /note="KEGG: bld:BLi00277 YnaD" /codon_start=1 /transl_table=11 /product="YnaD" /protein_id="YP_002459332.1" /db_xref="GI:219668897" /db_xref="GeneID:7259881" /translation="MYIETERLILRKPMIEDFAEYWLMKNDPMATMYTGGITPYTYEE RYKMFQEEWVDSGQNSEFTVIEKESTMYIGYCGIRYCDVMGENELLYGLCPNSWNKGY GYEAAKAVLDYGFSVLKLECIAAAVNPQNTYSEKILAKLELNYAGELAMTGIEKLRKY VLNVEQYNQRRV" gene complement(3087360..3087515) /locus_tag="Dhaf_2874" /db_xref="GeneID:7259882" CDS complement(3087360..3087515) /locus_tag="Dhaf_2874" /inference="similar to AA sequence:KEGG:SSP2309" /note="KEGG: ssp:SSP2309 truncated transcriptional regulator" /codon_start=1 /transl_table=11 /product="truncated transcriptional regulator" /protein_id="YP_002459333.1" /db_xref="GI:219668898" /db_xref="GeneID:7259882" /translation="MDKLVNTTSSSGLSFKPLEPRVEAHLNIVWKKYQVFSKAAEKFL ERMRQEI" gene 3087597..3087947 /locus_tag="Dhaf_2875" /db_xref="GeneID:7259883" CDS 3087597..3087947 /locus_tag="Dhaf_2875" /inference="similar to AA sequence:KEGG:Bphyt_0037" /note="KEGG: bpy:Bphyt_0037 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459334.1" /db_xref="GI:219668899" /db_xref="GeneID:7259883" /translation="MPSLALRIGDKNFRATLYDNDSTRSLLKKLPLTLTMDELNGNEK FYFFSEKLPSASERVGSIKTGDLMLYGSDCLVLFYESFPTSYSYTRLGTVDDVTGLAN ALGSGSVEVTFSIN" gene complement(3088092..3089489) /locus_tag="Dhaf_2876" /db_xref="GeneID:7259884" CDS complement(3088092..3089489) /locus_tag="Dhaf_2876" /inference="protein motif:PFAM:PF05569" /note="PFAM: peptidase M56 BlaR1; KEGG: cpo:COPRO5265_1460 peptidase, M56 family protein" /codon_start=1 /transl_table=11 /product="peptidase M56 BlaR1" /protein_id="YP_002459335.1" /db_xref="GI:219668900" /db_xref="InterPro:IPR008756" /db_xref="GeneID:7259884" /translation="MQSFIVTLLTCSITMSAIALFYMAVTPLLAKRYSAKGRYYAWLI IVIGLIIPFRPQFDNPFVKIIPTETATPTIQIGNRTQIAGPVESALSSSDVSHILLSW WQIAAAVWLAGMIAFLVYHTVKHYRFMKMTKRWCETITDEQILSLFQNLKAELGISKQ INLDQCLSIGTPMLIGFFQPKILLPTTKFPKNELRLILNHELVHYKRKDLWYRCLVLS AKAIHWFNPLVYLMAKAIDAVCEMSCDAEVVHSIDADMRQQYSEAIIGVVQYQSKVKT ALSTSFYGGKKGMKERISSIMDAGKKRVGVIIACAILLLTLSTGVAFAVSSDAVEMAL ENESQELPTPISFVNDSPIRKDVVLLESISFELSDTNPTQTYLIAEAYEDLIFSFKGV SAPINFTLVTQNEDSHCAGFSGDTCRVYIKSESNSENVFEWSRGFIDSDSTYKPTEIV DYSSGTLEIYQVHSL" sig_peptide complement(3088092..3088166) /locus_tag="Dhaf_2876" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.678 at residue 25" gene complement(3089491..3089868) /locus_tag="Dhaf_2877" /db_xref="GeneID:7259885" CDS complement(3089491..3089868) /locus_tag="Dhaf_2877" /inference="protein motif:PFAM:PF03965" /note="PFAM: Penicillinase repressor; KEGG: sgo:SGO_1281 penicillinase repressor, putative" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="YP_002459336.1" /db_xref="GI:219668901" /db_xref="InterPro:IPR005650" /db_xref="GeneID:7259885" /translation="MSTMKKLPDAEFDIMKVIWANEPPITANMIMEQLGNEKEWKVQT AISMLLRLVDRGFLRTEKNGKERTYYPLVSKEDYLKFETSNFMKQYHDNSFLDLVHTL YEGKAVTDEDIDELLQWAKKRRG" gene complement(3090111..3091079) /locus_tag="Dhaf_2878" /db_xref="GeneID:7259886" CDS complement(3090111..3091079) /locus_tag="Dhaf_2878" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: swd:Swoo_4720 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002459337.1" /db_xref="GI:219668902" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7259886" /translation="MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDI NRILELARLFGVTTDYLLKDDFETAVYSGADETENYIRVSLQEMNDFLKNNANYGSRI ALGAILCILSPVLLIVLSAVSRAGIAITERAASGIGIMTVFLMVAGAVAIFIISSAKM ERFEYLENGNFELEYGLSGIIKEKRAAFEKTHVQRTALGVVLCILCPIPLIVAGIFRA SNMTLSCFTALLLAVVSVAVYLFITVGTIKGGYDQLLREGEFEPKEQVRAKRVSKFAG VYWPIVVAFYLGWSFLTNNWGITWVVLPIAALIFAGVSSILHSLER" gene 3091432..3091899 /locus_tag="Dhaf_2879" /db_xref="GeneID:7259887" CDS 3091432..3091899 /locus_tag="Dhaf_2879" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bwe:BcerKBAB4_1962 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459338.1" /db_xref="GI:219668903" /db_xref="GeneID:7259887" /translation="MGKRVFFYLLYAVFFIILIQLGITYSFELKSFTSKTYNPYPAWT FNIALSVLIGLLLGLPEFIRRYKKPGKWRIQWERLLIVGLPALFFTFSLFIFFSSLGK YLSLILRPWAFESYGVIICGILFGYTMIMSMDKKGESPASLKGSPNQEHEEDS" gene complement(3092225..3092341) /locus_tag="Dhaf_2880" /db_xref="GeneID:7259888" CDS complement(3092225..3092341) /locus_tag="Dhaf_2880" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbe:Cbei_2368 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459339.1" /db_xref="GI:219668904" /db_xref="GeneID:7259888" /translation="MEIREADEKDLIGLLELKFYEQAGYNKNDKTAFIQWLD" gene complement(3092393..3093409) /locus_tag="Dhaf_2881" /db_xref="GeneID:7259889" CDS complement(3092393..3093409) /locus_tag="Dhaf_2881" /inference="protein motif:PFAM:PF00144" /note="PFAM: beta-lactamase; KEGG: bat:BAS2469 penicillin-binding protein" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_002459340.1" /db_xref="GI:219668905" /db_xref="InterPro:IPR001466" /db_xref="GeneID:7259889" /translation="MDINRIKHILIDQGFRGCIQISNNKQIIFAEAYGYSDFPNRIPN TLETKFATASAGKVFVAVSILQLIESGKLRLQDTLGDILPLDWHKIDTNITIEQLLMH TSGIPDYFDESVMSEYGDLWKDFPNYRIRTNSDVLPLFLDKPMMYPRGTKFQYNNTGF VVLAMMIEAVTNKPFDSYLHLNVFNPCAMDSTGYYELDSLPAKCANNYIFDGERNRFR TNIYSVDVKGTGAGGAFTTVGDIGRFWGALWSYKLMTRKTTLEMLRCHNGNIEAGYYG YGIWLEPRGNNGHSPYFQGRDPGVSFISAYEPSANVVITLVSNYGDNVWKLLRNIREC ISGQ" gene complement(3093436..3093534) /locus_tag="Dhaf_2882" /db_xref="GeneID:7259890" CDS complement(3093436..3093534) /locus_tag="Dhaf_2882" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459341.1" /db_xref="GI:219668906" /db_xref="GeneID:7259890" /translation="MVLLYFQNERLEWSFLATFLCGKVCYDRLIDY" gene complement(3093573..3093728) /locus_tag="Dhaf_2883" /db_xref="GeneID:7259891" CDS complement(3093573..3093728) /locus_tag="Dhaf_2883" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459342.1" /db_xref="GI:219668907" /db_xref="GeneID:7259891" /translation="MFLVSKHMYGFTKMPERCPLVRDVTLRAKGYRCLIVESYLVLLD YLWQAKL" gene complement(3093712..3095316) /locus_tag="Dhaf_2884" /db_xref="GeneID:7259892" CDS complement(3093712..3095316) /locus_tag="Dhaf_2884" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: bpu:BPUM_3026 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002459343.1" /db_xref="GI:219668908" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR013656" /db_xref="GeneID:7259892" /translation="MDNVSIINMLLVLSTLVILYFLLLIAKRTRKKQIHYAVLSMTAS ILLWNIAVLLYMTFDNVPWILAICERLYFLGTILVSISILFTGLIFARTKIKFTWKHG LLFVVPVISIGVLLTNQSHHLFYTVFSLIPSKQNFGIYFTIHTIYSYLCIGIGLAYLV IFSIKNYGVFSKQSSLICIGIMIALIMDAISTFKIFDWSTAIENIAFAVTISFFVIAT VKFDFLNVIPIALQTVVDLISDSYVVIDEDFEIIDYNQAFVSDFSGVARKVDIMAIIK KNYSDLDVKRFKGFLDEAVREHKKVSFEISKPRNEAIVYYRVEITPIYVSGNPIGTII LKKNITEHKNNLKEVMQLNERLQSLATRDWLTQSYNRYFFDERLQQEIDLVNRLQAYG LESEKSVNNFGLIMFDIDYFKNYNDNNGHLAGDELLQTIVTVVKGVLYPTDILCRYGG EEFAVICCHTSEKGFEIAAEKIRKAVEDYDFRFQDKQPGGNLTVSIGAAYCSTPNVNK KDLITRADNYLYLAKSTGRNKVVFSE" gene complement(3095516..3096577) /locus_tag="Dhaf_2885" /db_xref="GeneID:7259893" CDS complement(3095516..3096577) /locus_tag="Dhaf_2885" /inference="similar to AA sequence:KEGG:Clos_0351" /note="KEGG: aoe:Clos_0351 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459344.1" /db_xref="GI:219668909" /db_xref="GeneID:7259893" /translation="MFRENYKNLFSQIKPDETLVDSAIQTTRDKARSRQKPLNSLRKP AVALVSIGLCLSLAMPVLAANVEPIYQLMYLVSPQVAQLFMTVQKSDEDNGIKMEVVS AYIHDNIAEVYITMQDLTEQNRVDATIDLFDSYSINRPFDSAAHCERVDYDAGTKTAT FLITIEEWGNQNIVGDKITFSVREFLSHKKNYKDILVPIALSDVDVAESTQRVSSNGG GGLDYQKFVGGDQKPIALTPSAPRSEFSVEGISLTGIGYIEGKLHVQTAVKEPLDNDN HGFFYLKDGNGNRVDHNYSFAFSNQYEQPGRIDYGNYVFDLPQDEIGGYTLYGDFVTS GLKVEGRWRVTFPIESVKN" sig_peptide complement(3095516..3095707) /locus_tag="Dhaf_2885" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.981) with cleavage site probability 0.972 at residue 64" gene complement(3096570..3097058) /locus_tag="Dhaf_2886" /db_xref="GeneID:7259894" CDS complement(3096570..3097058) /locus_tag="Dhaf_2886" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459345.1" /db_xref="GI:219668910" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7259894" /translation="MEKQSLRADDCEEKIIKQYSDLVYRLAFARMGTRHDADEIFQEV FLRFIKKKPVFHEEEHRKAWFIRVTINCSKSFWSSSWFKNVQPIDDDIAFETKEAMDL YYELQKLPPKYRGVIYLFYYEDMSIEEISKALNRKNSTVRTQLTRARAALKAVIKEDD YV" gene complement(3097202..3097630) /locus_tag="Dhaf_2887" /db_xref="GeneID:7259895" CDS complement(3097202..3097630) /locus_tag="Dhaf_2887" /inference="similar to AA sequence:KEGG:795544" /note="KEGG: fgenesh4_pg.C_scaffold_18238000001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459346.1" /db_xref="GI:219668911" /db_xref="GeneID:7259895" /translation="MDDEELKIKMYSFTVDCKDPHELAKFYGALLKWEIMFIDEDWAC VYAPGTNQGAYPGILFQRNPEYKPPVWPEKPEAQQQMAHIDFAVNDLEKAVQYAIHCG ATIADEQFSNNWRVMLDPAGHPFCLCEMKSMIESAHFALL" gene complement(3097820..3098167) /locus_tag="Dhaf_2888" /db_xref="GeneID:7259896" CDS complement(3097820..3098167) /locus_tag="Dhaf_2888" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: nth:Nther_0972 hypothetical protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002459347.1" /db_xref="GI:219668912" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7259896" /translation="MNKFIFNDYFHEPQGKIAKRMLFKSDNVIAFVLNIAKGEILPGH THLESTLFLQVMEGNAKVVTDGNETSLQVGELMQVDGQESLQVINIGEDVLRLYVTIS PMGSEAFATDANV" gene complement(3098514..3100022) /locus_tag="Dhaf_2889" /db_xref="GeneID:7259897" CDS complement(3098514..3100022) /locus_tag="Dhaf_2889" /EC_number="3.4.17.19" /inference="protein motif:PRIAM:3.4.17.19" /note="PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: bsu:BSU22080 hypothetical protein" /codon_start=1 /transl_table=11 /product="Carboxypeptidase Taq" /protein_id="YP_002459348.1" /db_xref="GI:219668913" /db_xref="InterPro:IPR001333" /db_xref="GeneID:7259897" /translation="MNKKAIVEIEELKEYLKKVEYLSSSISLLHWDSVVNMPKEAIEY RSEMIGYLTGESYKLTTSEKMKEFIDYFNGINDLDDLTKAIIENITKDYNNATKIPEA EYVQYEIDKALSQSAWEEAKKKKDFSIFKPHLAKIIAYNKKFSEYWGFAGNKYDGLLD IYEPGMTTERLDAVFGELRESLVYLLQRIKNSNVKTDDAFLKGNYSVESQRKLGETIL GQIGYDYEKRGRIDISEHPFTTNFGNKDVRITTKYDTSDFRPAIFSMIHEGGHGIYEQ NIPDELEGTSLGSGASMGMHESQSRFYENILGKSMEFWSYFYPKFQKTYQDLEGVDFI SFYRAVNCVEPSLIRIDADELTYSLHIIIRYEMEKLLINSDIDIDDVPRLWNEKYKEY LGVEPENDADGVLQDVHWSGGDFGYFPTYALGNLYGAQIFNKLKEEIPDWNQKIYSGD FLSITKWLKENVHQYGATLKPTELIKKITGEELSAKYFIEYLNDKFGKLYGV" gene complement(3100034..3100228) /locus_tag="Dhaf_2890" /db_xref="GeneID:7259898" CDS complement(3100034..3100228) /locus_tag="Dhaf_2890" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459349.1" /db_xref="GI:219668914" /db_xref="GeneID:7259898" /translation="MKEVGDEVTPLCFIAITRKGVNPRLTEAQKRAYIIVDNRLAMNA GRPSHLFAQACLAWQKGQHE" gene complement(3100254..3100604) /locus_tag="Dhaf_2891" /db_xref="GeneID:7259899" CDS complement(3100254..3100604) /locus_tag="Dhaf_2891" /inference="similar to AA sequence:KEGG:lwe0086" /note="KEGG: lwe:lwe0086 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459350.1" /db_xref="GI:219668915" /db_xref="GeneID:7259899" /translation="MEKPRIYTMSFSSIYPLYLQKAEKKGRTQKEVNEIIFWLTGYDE QSLQQQITDEVDLETFFKQAPRINPNASLIKGVICGYRVEEIEDELMRQVRYLDKLID ELAKGKAMQKILRE" gene complement(3100664..3101128) /locus_tag="Dhaf_2892" /db_xref="GeneID:7259900" CDS complement(3100664..3101128) /locus_tag="Dhaf_2892" /inference="protein motif:PFAM:PF08327" /note="PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: nfa:nfa4230 hypothetical protein" /codon_start=1 /transl_table=11 /product="Activator of Hsp90 ATPase 1 family protein" /protein_id="YP_002459351.1" /db_xref="GI:219668916" /db_xref="InterPro:IPR013538" /db_xref="GeneID:7259900" /translation="MEQTIPICIPDLSLRPFNLSVERAMSFPPDILYRAWTEQFDLWF AEPDSVLMKGEVNTVFYFETAYEGNRHPHYGRFLRLMLGQLVELTWLTGAEGTKGAET VVTVELKEVEGGTILRLNHAGFSDEESRDRHEQAWPLVLAQLEDRLMKVSHS" gene complement(3101278..3102147) /locus_tag="Dhaf_2893" /db_xref="GeneID:7259901" CDS complement(3101278..3102147) /locus_tag="Dhaf_2893" /inference="protein motif:PFAM:PF00248" /note="PFAM: aldo/keto reductase; KEGG: aldehyde reductase, putative" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_002459352.1" /db_xref="GI:219668917" /db_xref="InterPro:IPR001395" /db_xref="GeneID:7259901" /translation="MNQKKILREVLLPDGTKLPKLGQGTWYMGEKSRLWQQEVKALAM GIEYGMTLIDTAEMYGEGAAEELVGEAIKPYPRETLHIVSKVYPHHAGRKTIFKSCEA SLRRLGLDYLDLYLLHWRGNIPLEETVECMNELVAQGKIKHWGVSNFDTEDMEELWQT PGGDRCSTNQVLYHLNSRGTEYDLQPWLKAHRLPMMAYCPMAHNLSTRQRIAQNPVVQ EIAQNYGLTVEQILLCFVLGQENVMAIPKASQPDHVKDNAQVYDISIHEEDWQRINLA FPAPQHKTYLDIL" gene complement(3102171..3103175) /locus_tag="Dhaf_2894" /db_xref="GeneID:7259902" CDS complement(3102171..3103175) /locus_tag="Dhaf_2894" /inference="protein motif:TFAM:TIGR00545" /note="TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoyltransferase and lipoate-protein ligase; KEGG: ctc:CTC02045 lipoate-protein ligase A" /codon_start=1 /transl_table=11 /product="lipoyltransferase and lipoate-protein ligase" /protein_id="YP_002459353.1" /db_xref="GI:219668918" /db_xref="InterPro:IPR004143" /db_xref="InterPro:IPR004562" /db_xref="GeneID:7259902" /translation="MSCPVKTKIVLSDSFDPWHNLALEEFLLHKVEKDQILLYLWQNQ NTVVIGRNQNPWQECRCTLLEEDGGKLARRLSGGGAVFHDLGNLNFTFIMDRELYDLH KQLQVILGGVNSLGIQAEFTGRNDLTVEGKKFSGNAFYFEKDKAYHHGTVLVHVDGEK VGKYLQVSKEKMAAKGVQSVQSRITNLRNYLPDLSIEEMKGTLMASFQSLYGACPEPL RIKDTDYDLGGLYEKYASWDWRYGKTPQFDLVLETRFPWGGIELGFTLRQGKIIGSTI YSDAMNAHLIQEISASFLNRTLNSSELLLALESLQVQEEDLMILQDMKEWIGEKIKDV" gene complement(3103220..3104569) /locus_tag="Dhaf_2895" /db_xref="GeneID:7259903" CDS complement(3103220..3104569) /locus_tag="Dhaf_2895" /EC_number="4.3.1.18" /inference="protein motif:TFAM:TIGR02035" /note="catalyzes the formation of pyruvate from serine" /codon_start=1 /transl_table=11 /product="D-serine dehydratase" /protein_id="YP_002459354.1" /db_xref="GI:219668919" /db_xref="InterPro:IPR000634" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR011780" /db_xref="GeneID:7259903" /translation="MNKRDMTGKSPEVIPHTPVVQDLRAAREIFWINPHYRATKEFKE AQFGISLSDIHDAEERLRRFAPYLAKAFPETQPAQGLIESPIVPIKRMQSYLESRYGV QIPGDIWLKCDHQLPISGSIKARGGIYEVLKHAEETLIKQGLLTREDDYARLKDSSFR DVLSHYKIAVGSTGNLGLSIGVMGAELGFKVTVHMSADAKGWKKALLRSKGVEVIEYT SDYSKAVEEGRRQAEGDSRCHFIDDENSRDLFLGYAVAGLRLKEQLEKLNRKVDADHP LFVYLPCGVGGGPGGVTFGLKQVFQEHVHCFFAEPTHSPCMVLGLATGLHDGIAVQDI GLDNKTEADGLAVGRASRFVGKIMAGLLSGAFTVEDAELFRLLQALDHAEGIQCEPSA LAGMAGPARLLLCKEGLQYIREHRLEEGLKKGTHLIWATGGSLVPEEVMKDYLSRGK" gene complement(3104699..3105556) /locus_tag="Dhaf_2896" /db_xref="GeneID:7259904" CDS complement(3104699..3105556) /locus_tag="Dhaf_2896" /inference="similar to AA sequence:KEGG:Anae109_4243" /note="KEGG: afw:Anae109_4243 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459355.1" /db_xref="GI:219668920" /db_xref="GeneID:7259904" /translation="MGKILLVILAIILMIFIVCAAVTTIAKFQFAQRVAEEVDQFYKG IEDAQGTVQLSDLEKLPPAVQKWLLHSQVVGKERVIAARTKQEISLRLKADQPWMKGE VEQYFRMAEPGFIWHTDIQMAPLLHISGRDKYVDGYGKMLIKALSLVTVADGQGKEID QGSLLRYLAEMMWFPAAALNDYIQWRELSDTSAEATMSYEGVTASGIFTFNEQGEVLS FEAERYGEFDGEYRLETWACTIQEHQGFKGMIVPSQGDLIWKLDSGDFQWYHFKVKEL EYNKPFRYQ" sig_peptide complement(3104699..3104761) /locus_tag="Dhaf_2896" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 21" gene complement(3105739..3106836) /locus_tag="Dhaf_2897" /db_xref="GeneID:7259905" CDS complement(3105739..3106836) /locus_tag="Dhaf_2897" /inference="protein motif:TFAM:TIGR00157" /note="EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity" /codon_start=1 /transl_table=11 /product="ribosome-associated GTPase" /protein_id="YP_002459356.1" /db_xref="GI:219668921" /db_xref="InterPro:IPR004881" /db_xref="InterPro:IPR010914" /db_xref="GeneID:7259905" /translation="MNCQYELKELGWNDAWQELFQPYLKSGFHPGRVAAEYRDRFKVW TEFGEVWAVVSGKMRYTALERSDFPAVGDWVVLEGRAESIKDHEDQDVIIQSILPRKS KFSRKAAGKTSAEQIVATNIDTVFLVNALNFDFNVRRIERYLTLAWESGANPVLVLSK TDLCDDVQEKVSQVQDAAPGVDILPISCATGDGVSAIAPYIRQGQTIALLGSSGAGKS TLVNYLLGQNVQLTYEVREKDSRGRHTTTSRELFLLPQGGVLIDTPGMREIQLFGSGE GLSEAFEDIAAYAGNCRFSDCQHESEPGCAVQKAIAEGMLSEERYESFKKLQREARYI SRKTNLHEQLEEKKKWKKITQQIKEHYQTKR" gene complement(3107210..3107797) /locus_tag="Dhaf_2898" /db_xref="GeneID:7259906" CDS complement(3107210..3107797) /locus_tag="Dhaf_2898" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459357.1" /db_xref="GI:219668922" /db_xref="GeneID:7259906" /translation="MDLFSWIPIIIFIYAVSTIFSPNKKKPQNRRPPTTRPQGQQSDR TPYSRQETKPARSGWREMFEELERELFPKEEPIDRPSRPSPAPRYPSTPQSYGREGSE RVEGFSTEGTWGTEGTAGVEGSVGSEGMWGSEGSKESLGKPEGKPRYASAKPVEQEKP VFPAVSDNPLVQGIIWAEVLGKPRAYNKYAYNRRI" gene complement(3107812..3108813) /locus_tag="Dhaf_2899" /db_xref="GeneID:7259907" CDS complement(3107812..3108813) /locus_tag="Dhaf_2899" /inference="similar to AA sequence:KEGG:Cthe_0858" /note="KEGG: cth:Cthe_0858 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459358.1" /db_xref="GI:219668923" /db_xref="GeneID:7259907" /translation="MNMPIEVLMPIILLALALILISVVFTFIPVGLWISALAAGVNVG IFTLVGMRLRRVTPSRIVNPLIKAHKAGLRVTTAQLEAHYLAGGNVDRVVNALIAAER AAIPLQFERAAAIDLAGRDVLEAVQMSVNPKVIETPVVSAVAKNGIELRVKARVTVRA NIDRLVGGAGEETIIARVGEGIVTSIGSSLSHEKVLENPDMVSRTVLAKGLDSGTAFE ILSIDIADVDVGKNIGAQLQTDQAEADKRIAQAKAEERRAMAVAKEQEMIAYVQEMRA KVVEAESEVPRALAEALKEGKLGVMDYYTMQNIMADTSMRDNIARSSNSNTDSNPKK" sig_peptide complement(3107812..3107928) /locus_tag="Dhaf_2899" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.759 at residue 39" gene complement(3108853..3109329) /locus_tag="Dhaf_2900" /db_xref="GeneID:7259908" CDS complement(3108853..3109329) /locus_tag="Dhaf_2900" /inference="protein motif:PFAM:PF01957" /note="PFAM: protein of unknown function DUF107; KEGG: nth:Nther_1193 protein of unknown function DUF107" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF107" /protein_id="YP_002459359.1" /db_xref="GI:219668924" /db_xref="InterPro:IPR002810" /db_xref="GeneID:7259908" /translation="MVTGGVVALVILGLSFLFLEIFIPGGILGIAGLVLLSAGIFLTA ESALHGVAYVCTMLLILGILVALSFRFPRTRRFWQRFSLNAKQSNREGYVAPTVDLES YVGCEGVAISPLRPAGTADFDGKRLDVVTEGGFIDTHSRVKVIAVEGTRVVVRQMS" gene complement(3109376..3109963) /locus_tag="Dhaf_2901" /db_xref="GeneID:7259909" CDS complement(3109376..3109963) /locus_tag="Dhaf_2901" /inference="protein motif:PFAM:PF08876" /note="PFAM: Domain of unknown function DUF1836; KEGG: btk:BT9727_2602 hypothetical protein" /codon_start=1 /transl_table=11 /product="Domain of unknown function DUF1836" /protein_id="YP_002459360.1" /db_xref="GI:219668925" /db_xref="InterPro:IPR014975" /db_xref="GeneID:7259909" /translation="MNHLKEIMEIANHFEPKKKALPYLELDSMMLSQVVEVAHRVAQN DINNTHIQNWVKRKYLPNPQKKKYTREQVANILLINDLRNILSLEEASQLLSFVNLNL EDNSDDRINPAKLYRYYSEIFDLSQKDWVTSLEQLPKEVNQILAGEDLSEDDKDKVAA TLVILDLLARANLYKQIAQQWLKNISRAGTPGEES" gene 3110265..3111494 /locus_tag="Dhaf_2902" /db_xref="GeneID:7259910" CDS 3110265..3111494 /locus_tag="Dhaf_2902" /inference="protein motif:PFAM:PF02073" /note="PFAM: peptidase M29 aminopeptidase II; KEGG: ctc:CTC01997 aminopeptidase II" /codon_start=1 /transl_table=11 /product="peptidase M29 aminopeptidase II" /protein_id="YP_002459361.1" /db_xref="GI:219668926" /db_xref="InterPro:IPR000787" /db_xref="GeneID:7259910" /translation="MNKQFLDKYARLVVKTGINLQPKQILVIKSPIECAEFTRKISEI AFQEGAKDVVIFWGDELTSKIRYLHGPEEIFDEFPAWQKAFFVDYARQGAAFLSIAAS DPELMKEVDPERMVRAQRAHSIALKEHRERLMSNQNSWCVVSVPTQAWAQKVFPAAGP EAAVEKLWEAIFASVRADQDDPVQAWDKHKANLKRSMDFMNTHRFRTLHFKNSLGTDL WVELPEDHLWLAGAEHTAEGLEFIANMPTEEVFTLPKKTGVNGKAVSSMPLNHNGNLI KNFTLTFKDGRVIDYSAEEGLESLKGLITTDEGSHYLGEVALVPYDSPISNAKILFYN TLFDENAACHLALGKAYAVTLKNGDKLSEKELEEAGVNDSLLHEDFMIGTADLNITGV TAEGQEIPIFIQGNFAF" gene 3111545..3112381 /locus_tag="Dhaf_2903" /db_xref="GeneID:7259911" CDS 3111545..3112381 /locus_tag="Dhaf_2903" /inference="protein motif:SMART:SM00316" /note="SMART: RNA binding S1 domain protein; KEGG: cno:NT01CX_0180 S1 RNA-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="RNA binding S1 domain protein" /protein_id="YP_002459362.1" /db_xref="GI:219668927" /db_xref="InterPro:IPR003029" /db_xref="GeneID:7259911" /translation="MIQVGKINQLNVANLASFGVYLDAGTGNRKDNVLLPGNECPDDI KEGDNLEVFIYHDSEDRLIATRQKPLAQAGELAYLNVTAKTKFGAFLDFGLERGLFLP FREQKYPIEVDKSYLVYLYLDKSGRLSSTTDITDFLSSASPYQKSDSVTGTVYQIHPD IGVFVAVDNQYLGLIPRTENYSDLKWGDRVQARVIRVRDDGKLDLSSRNLSHQQMNVD AELLINAMNAHGGILPLNEKASPEEIEKVFHLSKAAFKRAVGTLLKSGRIKKHGDELR LP" gene complement(3112581..3113825) /locus_tag="Dhaf_2904" /db_xref="GeneID:7259912" CDS complement(3112581..3113825) /locus_tag="Dhaf_2904" /inference="protein motif:PFAM:PF04165" /note="PFAM: protein of unknown function DUF401; KEGG: glo:Glov_0511 protein of unknown function DUF401" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF401" /protein_id="YP_002459363.1" /db_xref="GI:219668928" /db_xref="InterPro:IPR007294" /db_xref="GeneID:7259912" /translation="MFVIAKISVTLAMVVWLLRKKVQIGHAMLAGSIVLFLISSPTLG KADAAIQTTLREVGTWEVVFAMYFVMCLEHLLRTTGIIEGFMAAMKPLLRSDRVLLAF MPTFLGLLPSLGGAIFSAPMVEQASKKFSLSPEKKGAINYWFRHIWEYGNPIIPGVLL ASQITGIPLGTFVADMIGYTLLALLLGVVFILTGKGFQSGPAVQNDSVKDLDCGKNQA DSLKIRSPFHYFLLGVGPILVNIILVVAFDLSAALSMGIVVSGMVIILGFTRQQLVTM LREAFEKKILWGILGILFFQHVLTVSGIVQELIAFFQGTNIPVVVMLGLGSLIVALLT GSPQGAVAVIFPILSAFYPGNLETATVAYIMAIAGAMLSPAHLCLIVTAEYFKADLFK ILKPVLLLEVMILTFMAVVHLI" sig_peptide complement(3112581..3112715) /locus_tag="Dhaf_2904" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.772) with cleavage site probability 0.465 at residue 45" gene complement(3113885..3115342) /locus_tag="Dhaf_2905" /db_xref="GeneID:7259913" CDS complement(3113885..3115342) /locus_tag="Dhaf_2905" /inference="protein motif:PFAM:PF02386" /note="PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk" /codon_start=1 /transl_table=11 /product="cation transporter" /protein_id="YP_002459364.1" /db_xref="GI:219668929" /db_xref="InterPro:IPR003445" /db_xref="GeneID:7259913" /translation="MNYSLVQGIVGRLLMGYALTMFVPLVLAAFKNEDSTWAFLLTLL ITACLGAAMVYFRKPTQEKMSIRESFVIVGGAWLLTSLLGALPFWISDSVPTYIDALF ESVSGLTTTGSSVIDDVEALPLSILLWRSITHWLGGIGIIVLFIILLPSTGFGAVHLF NAEVPGPLGKRTMPRIRDTAITIWKIYAFFTVILVALLMLAGMSLFDAINHGFSTISA GGFSTKNTSMMYYNSLGIELVVILFIIIAGGNFRIYLEAWTKKSFKPFKNTEFITYLS IIMFSTLLIVGGLWLTHDKPPDYAVRHALFQVVSLVTGTGFASTDYNQWPAITKLTLL ALMFVGGCAGSTTGGMKVSRIMLLSKHVWAVLTRGLHPRAVSSIKLDGRAVDAVAVNM VSVFFFLYVGIFALATIVMAGTGLEPFDAMSAVAASLGNVGPGFGLVGPTTTYSGITL FGKFILSLCMLLGRLELFTLLILLRPEFWRTKGGW" gene complement(3115385..3116845) /locus_tag="Dhaf_2906" /db_xref="GeneID:7259914" CDS complement(3115385..3116845) /locus_tag="Dhaf_2906" /inference="protein motif:TFAM:TIGR00933" /note="TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: amt:Amet_4415 TrkH family potassium uptake protein" /codon_start=1 /transl_table=11 /product="potassium uptake protein, TrkH family" /protein_id="YP_002459365.1" /db_xref="GI:219668930" /db_xref="InterPro:IPR003445" /db_xref="InterPro:IPR004772" /db_xref="GeneID:7259914" /translation="MNLPVILGLLGKLLVIYAGAMCIPLTLAVVLGEWSVYSFLLSII IIGIPGFFLMRRFKLTEMKFGVREAFAAVTGAWLLASFTGALPYWFADVVPTYIDALF ETVSGLTTTGASVISDVEALPQSILLWRSLTHWVGGLGIIVLFIVLLPKTGMGSVLLF NAEVPGPTNDRVMPRIRDTAAALWKIYLIFTAICAVLLWMAGMSFLDALNHAFATIAT GGFSTKNTSIMYYNSLTIEMIVAFFMIFSGANFVIYLTVWRKKTMKAFRNTELMVYLL IIIAATLLIAGSLWSNAGNSPGYAFRHALFQVASIMTTTGYASVDFDQWPSMTKIILF LLMFIGGSAGSTSGGMKVSRIILLVKATWAELKRGIHPRVVSSIKLDDKVIDTENLSR VGIFFFLYIVTFTGASIIVAASTGLSPFEAMSAVAATLGNVGPGFGTVGPTTTFAGIS LLGKIVLTVCMLLGRLEFFTLLIIFRPEFWGKGKVW" gene complement(3116847..3118199) /gene="trkA" /locus_tag="Dhaf_2907" /db_xref="GeneID:7259915" CDS complement(3116847..3118199) /gene="trkA" /locus_tag="Dhaf_2907" /inference="protein motif:PFAM:PF02254" /note="involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain" /codon_start=1 /transl_table=11 /product="potassium transporter peripheral membrane component" /protein_id="YP_002459366.1" /db_xref="GI:219668931" /db_xref="InterPro:IPR003148" /db_xref="InterPro:IPR006036" /db_xref="InterPro:IPR006037" /db_xref="GeneID:7259915" /translation="MRVVIVGAGKVGYSLAQYLTQEDHEVIVIEENEERRAIVQNTLD VMTISGNGASPRVLLDPEVRKAELMIAVTDMDEVNMIACMAAKQVGIKRTIARVRNQE YAEKDKIKFNEALGIDLTINPEMVTALEIKRILLTPSALDVEDFAGDRVRMIEVKMPS DSKLINTSLTQLTLPSHTLVAGILRNGRMLIPHGSDMLLPNDCVFFVGEVSAIKKIED HFTVRKSKVERVLIIGAGRIGRHLAMILEKSDIAVKIIDKDMERCQELAESLDEGLVL CGEGTDIELLTEEGVGEADAVLCLTDDDKLNLLIALLAKHLGAPRTFVRVGRPDYISL MEKVGVDVVLSPRILTAGVILRYVRRSDVVSVSLLEGAKAEAMEIIIPPLSQVTHKKL KDAKLPKNSLIGSIVRDEEIIIPNGETVLKPGDRAIIFALPDTVPTVVRLFENKLESK" gene 3118389..3118970 /locus_tag="Dhaf_2908" /db_xref="GeneID:7259916" CDS 3118389..3118970 /locus_tag="Dhaf_2908" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459367.1" /db_xref="GI:219668932" /db_xref="GeneID:7259916" /translation="MLKKIKKPTWSTFLVSGSTAVFAIISLISVFITINTWQTQREAA RPYFSFKESPSIQLTHDVSFEFKFVNVGTHPATELTSKTLVFPENLQEQPILIDTYSV VNDIPRDTATSLLLHLDPSQLYPAAPDLDAYYIVISLDYRDPILKETYHQIIFLKWPG VNHGHVQPLIHMEAGEKTQVIQYIQNRDLLSLP" sig_peptide 3118389..3118460 /locus_tag="Dhaf_2908" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.795 at residue 24" gene 3119092..3120441 /locus_tag="Dhaf_2909" /db_xref="GeneID:7259917" CDS 3119092..3120441 /locus_tag="Dhaf_2909" /inference="protein motif:TFAM:TIGR00797" /note="NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones" /codon_start=1 /transl_table=11 /product="multidrug efflux protein" /protein_id="YP_002459368.1" /db_xref="GI:219668933" /db_xref="InterPro:IPR002528" /db_xref="GeneID:7259917" /translation="MEQITTIKLKVHQFIHILLPILISQVALFSMSFFDTAMSGQASS VDLAGVAIGASLWAPASTGLGGILIAITPIVGHLLGAKRRNEVPYNVLQGIYLALAIA FLLIVAGAMSLDGLLSLMNLEPQVRFIARGYLLAIAFGIPPYFVHQVLRSFIDALGYT RITMLITLLSLPINICLNYIFIFGKFGLPAFGGIGAGIATSMTYYCLMLIALFIIHRH PYFKEFALFKRLPPLSWKTWLKQLKIGIPIGFSIFFETGMFCAVTLLMSRFNTVTIAA HQGAMNFASMIYMIPLSFSMALTILVGFEVGARRYHDARQYSLIGLAFSFSIALLTAL LLFLFKEQVAWLYSKEWDVILLAKQFLIYAIFFQFSDALATPIQGILRGYKDVNLPFI TSLISYWFIALPIGYFLAAYTSFGAFGFWIGLISGITTNACCLLLRLRYILRRQVAV" gene complement(3120827..3122029) /locus_tag="Dhaf_2910" /db_xref="GeneID:7259918" CDS complement(3120827..3122029) /locus_tag="Dhaf_2910" /inference="protein motif:PFAM:PF02589" /note="PFAM: protein of unknown function DUF162; KEGG: chy:CHY_0147 iron-sulfur cluster-binding protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF162" /protein_id="YP_002459369.1" /db_xref="GI:219668934" /db_xref="InterPro:IPR003741" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7259918" /translation="MRKEFKEYSKEIDRAKHDENIRKAISRAVKAYRETTDSTMERFP HTPALAEEVREIKRRSVAQRQELLAQAMEAVERNKGKAFYAKDKQEALVMAAEIIGKG KTVVKGKSMLGEELHLREYLEEEGIEVWETDLGEFILQLKKDRPMHILSPAIHVPREK VAEIFTQFFGKEVEPDIAKEVAIVREFMREKYFTADVGISSANVVAADTGAFVIIENE GNVRLSTAVPPVHLMIVGTEKLVPTFQEAMKVAEVTWRYAQYGVPSYVNIVTGPSKTG DIEKVTTYGAHGPKEFYVIFVDNGREKMAVDDDFKQASHCLRCGGCMYECPVFQITAG TFGETYLGGIGTIWNVFTSGGLEATAPQIHTCLRCGRCVERCPMQIDVPNMIGELRNR LASGEVIE" gene complement(3122026..3123045) /locus_tag="Dhaf_2911" /db_xref="GeneID:7259919" CDS complement(3122026..3123045) /locus_tag="Dhaf_2911" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: chy:CHY_0148 putative reductase" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002459370.1" /db_xref="GI:219668935" /db_xref="InterPro:IPR004017" /db_xref="GeneID:7259919" /translation="MIVATNPIEMPTTVERKMPPVLELIRGNIVKYGNPLALKGSEVS SWAKELKLPKTGNLLFYTGGEYQLLPYIDSLVKTMTVMDPNSAGFSMLMGVRNIVEKT GIAPEKIYASVLASDKERFNQVSLKAARILQSLGYDLCYSGDEELYSGALLYELGYWD DFAAYAQKVTKVLKGTQAKTIVCLSPHAAEVIKIMYPKFGVHHDLEVKTFVELVWEQR HKLPKIAAQQSVVIHDSCRLARDLGVTEEIREILDAMGVEFKEPMRNRAWTTCCGGPN KFMFPELSHTIAERRVGELQDTGADLILTSCPYCLSSLQGAIAKKDQHGIADLIEFLY KGIVG" gene complement(3123234..3123995) /locus_tag="Dhaf_2912" /db_xref="GeneID:7259920" CDS complement(3123234..3123995) /locus_tag="Dhaf_2912" /inference="protein motif:PFAM:PF00731" /note="PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: chy:CHY_1282 hypothetical protein" /codon_start=1 /transl_table=11 /product="1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase" /protein_id="YP_002459371.1" /db_xref="GI:219668936" /db_xref="InterPro:IPR000031" /db_xref="GeneID:7259920" /translation="MNEEQLRALLQGVKDGQISCDSALLELKNLPYEDLGFAKVDHHR ALRNGFPEVVFCQGKAKEHIIEILANLGQRSHNILATRATPEVYAAVQAAIPEASYSE LARVITIVKEAIPKRGRVLVLSAGTADLPVAEEAAITAEIMGCGVERLYDVGVAGIHR LFDNKERLDEAQVLIVVAGMEGALASVVGGLTDKPVIAVPTSVGYGASFGGLAALLAM LNSCSAGIGVVNIDNGFGAGVLANSIIRAIHAGEV" gene complement(3124130..3124882) /locus_tag="Dhaf_2913" /db_xref="GeneID:7259921" CDS complement(3124130..3124882) /locus_tag="Dhaf_2913" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_5223 iron compound ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459372.1" /db_xref="GI:219668937" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259921" /translation="MIKIDQVKKVYTDEVKIGPLHINIPKAGLTSLIGPNGAGKSTTL LMIGRLLDMDEGQIKVANMDVSESKSADLAKVLTILRQENHFVTRLTVRQLVGFGRFP YSKGRLTKEDEAIISKYIDFLGLTDLESRYLDELSGGQRQRAYVAMVLCQETEYVLLD EPLNNLDVARSVQMMEHLRHAANEFGRTILTVLHDINFAAKYSDRICAMKDGQIAAFG TVEEVMDPEVLTDIFETKIEIIAGPHGPVAIY" gene complement(3124879..3125943) /locus_tag="Dhaf_2914" /db_xref="GeneID:7259922" CDS complement(3124879..3125943) /locus_tag="Dhaf_2914" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: bcz:BCZK4813 iron compound ABC transporter, permease" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002459373.1" /db_xref="GI:219668938" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7259922" /translation="MSELVYSHKENSEIDSSLHNKERSARAFRSKKEEKRYWILLITL IALGIFASYGLLVYNNPVPVDSPSFIPVVKRRLVALVAMIIAAVCQSLSTVAFQSITN NRIITPSLLGFEALYATIHTSTIFFFGAGAFIGFNGVGSFVFQVVAMVLMCLILYGWL LSGKYGNLQLMLLVGVIIGTGLKSLSSFMRRLLAPSEFDILLTRLFGSVNNADAGYFP VAIPVVIIASLLLLAYSKKLNVLSLGKNASTSLGVNQQFSVIYTLILVAVLMSISTAL VGPLTFYGFLVATLCYQAAPTYDHRYIFPMALAIGFLIITAAYFFMYHIFNAQGVVSI IIELFGGITFLIVILRKGTL" gene complement(3125940..3126953) /locus_tag="Dhaf_2915" /db_xref="GeneID:7259923" CDS complement(3125940..3126953) /locus_tag="Dhaf_2915" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: bcz:BCZK4814 iron compound ABC transporter, permease" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002459374.1" /db_xref="GI:219668939" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7259923" /translation="MPGNTIQKMAGAENSQPQRYNHNKIWTKPFALAVLAVVAVGIIS LFTGVYDIKGQADGREMFFITRVPRTAALMLTGAAMAMSGLVMQLVTQNRLVEPTTTG TIEWAGLGLVFVYLFFPAPTLVQRMTGAIIFSFVGTMIFFLFLRRVKLRSSLIVPIIG MMLGAVISAVSTFVGLVFHMTQNIETWFVGSFAPVQIGRYEYLWLIIIATVLIFIYAD RLTLAGLGEDVTKSLGLNYNRIVLLGTALISFAVGIVAAVIGNLPFLGLIVPNIVSMY RGDDLRSNLPWVCVLGMGTITLCDIISRIIIMPFEVPVSLILGTVGAVLFIAILLRQR RLR" gene complement(3126973..3127986) /locus_tag="Dhaf_2916" /db_xref="GeneID:7259924" CDS complement(3126973..3127986) /locus_tag="Dhaf_2916" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: bce:BC5106 ferric anguibactin-binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002459375.1" /db_xref="GI:219668940" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7259924" /translation="MRKSKFFKSAVIIATFALMLTACTNSSNQTVNPQGNDQVSEAST VEITDVHGTVTVPVNPKNVVALDNRTFETLSDWGIELAAVPKPVMPADSPYVKDESVQ DIGSHGEPNLEIIAAVDPELVIVGQRFARFYDDIKKLVPNAAVIDLNFDVSTEADAPG ENLVNGLKDSTIALGQIFDKNKEAEQLVADFDQAIAEAKSAYNGTDTVMSVVVSGGNI GFSAPHSGRVWGPMYEIFGWTPALKIDGASSDHQGDDVSVEAIAQSNPDWIFVLDRDA AVSSMTDAVPAQDVIDKSPALQKTTAVSKGQIVYAPKDTYTNESIQTYLELFEELAKA LTK" sig_peptide complement(3126973..3127059) /locus_tag="Dhaf_2916" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.542 at residue 29" gene 3128251..3128607 /locus_tag="Dhaf_2917" /db_xref="GeneID:7259925" CDS 3128251..3128607 /locus_tag="Dhaf_2917" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbt:CLH_3268 AraC-family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002459376.1" /db_xref="GI:219668941" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7259925" /translation="MDKKRTINPPVYSPHVKKAVDFTYQNLNEELSLERVTEHLNLNK SYFCKLFKHHMGTTYTKFVNELRIEQGKQLLLETELSILDIALALGYNNPNYFIKAFK QHLGTTPLKYRKERES" gene complement(3128604..3129302) /locus_tag="Dhaf_2918" /db_xref="GeneID:7259926" CDS complement(3128604..3129302) /locus_tag="Dhaf_2918" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_0039 predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002459377.1" /db_xref="GI:219668942" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259926" /translation="MKRILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNN EFDLIILDIMLPGLDGLEILKSMKEDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKP FSPGELVARVKAHIENYERLKERFNAGIKKRQSITIRGLKIEKDSRRVFVNHQEVNLA QKEFDLLLYLAQNPNRVFGREELFERIWGLESLGDSATVTVHIARIREKTEIDPSKPQ YIETVWGAGYRFRV" gene complement(3129563..3130788) /locus_tag="Dhaf_2919" /db_xref="GeneID:7259927" CDS complement(join(3129563..3129874,3129874..3130788)) /locus_tag="Dhaf_2919" /inference="protein motif:PFAM:PF02371" /ribosomal_slippage /note="PFAM: transposase IS116/IS110/IS902 family protein; KEGG: amt:Amet_1524 transposase, IS111A/IS1328/IS1533" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002459378.1" /db_xref="GI:219668943" /db_xref="InterPro:IPR003346" /db_xref="GeneID:7259927" /translation="MDAILECCAGLDVHQETVVACILFGSLESKPKKTIRTFSTTTSD LLALTDWLEEEKCSHVAMESTGVYWKPVWNILEAGSFQLSLANAQRIKNLPGRKTDVK DAEWIAQLLRSGLIEGSFVPPAEIRDLRDLTRYRKKLLQDATQEKNRIHKILQDANIK ITTYISDIFGVSGRNIMESLMDGEVITVEKLNQMVKGKVKSKIPGLADALNHRLRSHH RDMIRYSWSHLKFLEQSLINVEQKISECMAPYQQEVELLTSIPGINQTSSAIMIAELG ADMSVFPTDSQLSSWAGVSPGNNESAGKKKRGSVSAGNKALKAVLCECAWAASKVKNS RLSATYWRWVKRMGKKKALLALGHLILRIAYRILVTRETYRELGTEYMMERERQKEQR LIRQLQAKGYQVLQAS" gene complement(3131400..3132839) /locus_tag="Dhaf_2920" /db_xref="GeneID:7259928" CDS complement(3131400..3132839) /locus_tag="Dhaf_2920" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ctc:CTC01491 sensory transduction protein kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002459379.1" /db_xref="GI:219668944" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259928" /translation="MNLKGRLISANALTVILPVMITVISAMAYIYIAGKLADTEQAIH NTQEVAQLTMELVGRENSVLRQNPEKIKDSSFQKELQARMDILDGEVVVLEGERVLFS SHNLTAIDVVKLKKPAIQFRSARVDLGTQSYTVQSFDVSRDEAQAEKQTTLYLLVPIN PASFDMTNFLIFSGLVFLLSFIGANSIASYYFSLRILTPLNNLQKAAMEITLGNLDYE IVEEGDQEVRELCRDLERMRIQLKNSVHTQLKYEDNRKMLISSISHDLKTPVTSIKGY VEGLLDGIANSPEKKEKYLKTIYRKAEQVDTMIDDLLLYAKLDLNQIPFSFEKTNIGE FLDDGLQEIEPEMERNGIKILFESELTSAQEIPLDRERMMRVILNIIDNSRKYMDKEE GVITLSLRETHSSVIIEIKDNGRGIPKKDVAQIFERFYRSDTARTEIKGSGLGLAIAK QIVEGHEGRIWAVSREGKGTSVLISLPRS" sig_peptide complement(3131400..3131486) /locus_tag="Dhaf_2920" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.951 at residue 29" gene complement(3132849..3133601) /locus_tag="Dhaf_2921" /db_xref="GeneID:7259929" CDS complement(3132849..3133601) /locus_tag="Dhaf_2921" /inference="similar to AA sequence:KEGG:CTC01492" /note="KEGG: ctc:CTC01492 membrane spanning protein" /codon_start=1 /transl_table=11 /product="membrane spanning protein" /protein_id="YP_002459380.1" /db_xref="GI:219668945" /db_xref="GeneID:7259929" /translation="MAVFQAALINELEKLRKKKKVMVAVILSLLVIVVGQLLVLGVRL GFGIRGAGSADFSMLVLSVAVNTLLPLFAALVAIDSFSGEFAQNTMRITLTRPVSRFK LFSAKVSAIGIFILANLGLLLLFSLLAGFVFDGGTMSFKGIWQSTLSYTVSFIPLFVL ALGIVFLANVLKSGISVFFVSILAFILFKGLGMLFSQYSGILLTSYFDWYNLWLANSF PLMKIIRQFLLMLGYALLFFTGAYYLFDKKEF" gene complement(3133570..3134313) /locus_tag="Dhaf_2922" /db_xref="GeneID:7259930" CDS complement(3133570..3134313) /locus_tag="Dhaf_2922" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3066 ABC transporter related protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459381.1" /db_xref="GI:219668946" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7259930" /translation="MEKVIEIQNLTKLYKNGRGINDLSLDIYEGEIFGFLGPNGAGKT TAMKIMTGLIAPDRGDVKIFGHSILEDYEKAMAHVGCIIEIPETYPYLSAYDNLRQLA RFYPDVDGQRIEEVLELTGMLRYKNEKPKRFSLGMKQRLGLSAAILSRPKVVILDEPL NGLDVEGMIDIRKLILYLAEQERTTFFISSHLIHDVELTCNKIGVIYNGMLLNVQTTE DILKNYATLENYFVSEVERNGRVSSSINQ" gene complement(3134389..3135636) /locus_tag="Dhaf_2923" /db_xref="GeneID:7259931" CDS complement(3134389..3135636) /locus_tag="Dhaf_2923" /inference="similar to AA sequence:KEGG:CTC01495" /note="KEGG: ctc:CTC01495 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459382.1" /db_xref="GI:219668947" /db_xref="GeneID:7259931" /translation="MKLKKKTAIIAGFTIGALLFATTAFADIVSKSGYDQLKDGIKMT AEKAGSEYSNYTIEMTAVLKADGKVLQSESSVEKTDRIKNATESTNTSEDFQGQVFNH YYYNDNNTTIRKSKGDNKIYVGEYPEGRNFQAFDNPFAEDEFEDVERIIDAVVGSLKD HVIVKENPDGSKELSGSLSEMQIPTLINAVSSFAIKQEFHDSRMENGWPRMTKDIAVK EVTGSASIDEAGALQNLLAQATITGKDADGQVHELTVEVLGTIKDINTTVVTKPDLTG QEVVKDIIKDRNVMSNPQKFVGTFKNDIITEKDGRLVKAGERILEITNIDQNGITGRY QEVYKADYVSSVNKSEDFTFNAKFLSEDMRDASFEGSAGEGSNREGHIYLDNYMGKIN FYINNDYSNMNLMYDSTFNPVLE" sig_peptide complement(3134389..3134469) /locus_tag="Dhaf_2923" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" gene complement(3135795..3136859) /locus_tag="Dhaf_2924" /db_xref="GeneID:7259932" CDS complement(3135795..3136859) /locus_tag="Dhaf_2924" /inference="protein motif:TFAM:TIGR02872" /note="TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: gka:GK2532 hypothetical protein" /codon_start=1 /transl_table=11 /product="sporulation integral membrane protein YtvI" /protein_id="YP_002459383.1" /db_xref="GI:219668948" /db_xref="InterPro:IPR002549" /db_xref="InterPro:IPR014227" /db_xref="GeneID:7259932" /translation="MKEFAKKVAVTLLVIIAFILIPLVAYYALPHFAPFIFALVFALL LEPFNQWLMKWPKINRPVAANISYFVFLGGFLLLAYFLITKITSEAYELIKFIQRNIP NIQFWFNDANQRINELIMVLPPEMVAQINQTITGFANQLSSINLLSTWGAQTISITAS IPIFFITLLIFFIALYMINLNLHHISQRFFSYFKKESKPKAIAVLSDLRNATIGFLKA QVVLSTFTYIVSLGGLLILDMRYALVLALLIVIVDILPILGTGSVLVPWGIVLITLGD IFSGLGLILLFIVITVLRKIIEPKILGERIGLGPLSTLISIWVGFKVMGVLGVFLAPL LIIFYKALVKAKVIQYRFSI" sig_peptide complement(3135795..3135872) /locus_tag="Dhaf_2924" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.615) with cleavage site probability 0.443 at residue 26" gene 3137029..3138351 /locus_tag="Dhaf_2925" /db_xref="GeneID:7259933" CDS 3137029..3138351 /locus_tag="Dhaf_2925" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_1387 radical SAM family protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459384.1" /db_xref="GI:219668949" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7259933" /translation="MIIETTKQNLSQIRNPEFSQYAQIYARVYDHFIDQIKQTGMALD ENLEKETAAKLEKIKQMQGVFRNSDKSIVNTWISSACEACQKGVGTVTMYVSLMCHRN CYFCFNPNQEDYEHFTHNKRDLVSELTQHLKHGPKLTHLALTGGEPLLHKKEMLDFFR LAKEKSPKTHTRLYTSGDFLDREILQDLKDAGLSEIRFSIKMEDPERLKQEVYERIAL SKEFIPDVMVEMPVLPGSFAEMKEVLLELDRIGISGINLLEFCFPFNNADEFIKRGYK VKNPPFKVLYDYWYAGGLPISRSELECLDLMAFALEEKLQLGVHYCSLENKQTGQIYQ QNYGQKVSSLMFFSPRDYFFKSAKVFGEDISKVKKIFKKKNVTQSQFNADYNYLEFHV SQIKLLKDLDIEIGISSNVMEVREDGKYLRELKIDRTYPKDFDLSKDI" gene complement(3138415..3139119) /locus_tag="Dhaf_2926" /db_xref="GeneID:7259934" CDS complement(3138415..3139119) /locus_tag="Dhaf_2926" /inference="protein motif:PFAM:PF06192" /note="PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_002459385.1" /db_xref="GI:219668950" /db_xref="InterPro:IPR010395" /db_xref="GeneID:7259934" /translation="MVDMDIDETIGVTFAESHFPEVRKLMYQTINLGFFSPPSVELLK AIIEEKLFESLPLEINREGFQQGLALLRAWFASLDERNLEDRAAQLNEDYNKLFVDPC QLLAPPWESVYRTEERATADLTTLKVREFYGRHGLAYVLKHKEPEDHYSVELEFMAEL IRRQSYYLRTGIVKEALYLFKEQQRFLEEHLLKWSLDFTLSVIQNAHTEYFQGMALLA HEFLMWDYDLLTRKGS" gene complement(3139384..3140715) /locus_tag="Dhaf_2927" /db_xref="GeneID:7259935" CDS complement(3139384..3140715) /locus_tag="Dhaf_2927" /inference="protein motif:PFAM:PF00270" /note="PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ctc:CTC01856 ATP-dependent RNA helicase" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_002459386.1" /db_xref="GI:219668951" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7259935" /translation="MDNMERPESFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILN NRDVAGQSETGSGKTLAYLLPVLQKIDRNKRENQVLVLTPTHELALQVQRQIQDLSRH LAATITSAAIIGNVNIARQIEKLKEKPHIIVGSAGRILELIQKRKISAQSLKTIVLDE ADQLLDERNIQTVKAVLKTAYKDSQILLFSATLSQDAIEQAAGFLKDPAVQRITMKAT VVPTIIHQHFMCEQRDKLELLRKLVRHLEPGRALIFINKTEEIEKTVERLSYHGLDAV AISGASQKENRRQAMADFRAGKTQLLVASDLAARGLDIKNITHIFNLDIPEEPQLYLH RVGRTGRAGQSGVAVSLVTQRELPLLHKIENSLKISIPLRRLSFGKVISEKEEKGQQT RTRTKAGAGTKTETKAKAKPEAKTKTEAKAKTKTGVKAKTKPHKAKAQLYK" gene complement(3140939..3143125) /locus_tag="Dhaf_2928" /db_xref="GeneID:7259936" CDS complement(3140939..3143125) /locus_tag="Dhaf_2928" /inference="protein motif:TFAM:TIGR01389" /note="KEGG: drm:Dred_1261 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase RecQ" /protein_id="YP_002459387.1" /db_xref="GI:219668952" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR002121" /db_xref="InterPro:IPR004589" /db_xref="InterPro:IPR006293" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7259936" /translation="MMNQALSLLKRYFGYSQFRKGQDKVIHSLLQSSDTVAIMPTGAG KSLSYQIPALLFDGVTLVISPLISLMKDQVDSLHEAGVPATFINSSLSMQEVWERINK ARQGRYKLLYIAPERLEAESFLTLLESLTISFVAVDEAHCVSQWGHDFRPSYRKIGAF VESLPHRPIIGAFTATATQEVREDIVSLLKLESPQVFVTGFDRPNLKFSTLKGENKKV FISTYCLQHRSESGIIYAATRKEVDQLQTYLKGKGLLVGKYHAGMSDLDRQKAQEAFL YDKTPLMVATNAFGMGIDKSNVRFVIHYNMPKNMEAYYQEAGRAGRDGEPAECILLFA PQDVVLQRYLIDNNTFNPERKVNEHKKLQDMADYCHTARCLRKEILEYFGETEIPAEC GNCGNCTDDWDVVDITVDTQKILSCVLRMGERFGVNLVAEVLKGSGNKKIMDFRFHQL STYGLMSKRTIQEIKDQINYLIAEDYLRLSTGEYPVVKCGRKAAPVLKGNEQVLQKVL RKAKLQEEESLTLFDYLRGLRREAAAKEGLPPYMIFPDSTLREMAESCPRNRAEFLRL GGVGEKKLEKYGDIFLQGIEEFFGKQGINSSETMARTLAKPPLEKAPELQPEPAGLEE SQKSESKIPSHLITYRLYQEGKSLEEIAKLRSYKVITLQDHLLRAFKEGQPISWSDFI PEDQEQLILAAIQQVGMEKLRPIKDALPAEVDWMAIKSVIAKNFGT" gene complement(3143127..3143777) /locus_tag="Dhaf_2929" /db_xref="GeneID:7259937" CDS complement(3143127..3143777) /locus_tag="Dhaf_2929" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_1316 5-methyltetrahydrofolate--homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002459388.1" /db_xref="GI:219668953" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7259937" /translation="MDDQLLNALADLDEEKTINLVKEYLSKGVSPLKVVELCQQGVEV VGKRYCNGEYYLSDLIMSEEILKEVMVILEPLITSDIPSNGMTIILGTIEGDIHDLGK NIIHYMLKSSGFKVVDLGVDVSPETFVQAVNQTKAPVLGISVLLSFCVSAVKKVVDLL VESGLRDQVKIIVGGYPVNEIVKDYTGVDYYTNDITKLFEICQMLKDELPIPEETS" gene complement(3143770..3144549) /locus_tag="Dhaf_2930" /db_xref="GeneID:7259938" CDS complement(3143770..3144549) /locus_tag="Dhaf_2930" /inference="protein motif:PFAM:PF00392" /note="PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mta:Moth_1312 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002459389.1" /db_xref="GI:219668954" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:7259938" /translation="MNEEQSIDKNSVIPIYYQLAKLLESQILHGELKPGEALPTETEI ANRFEISRMTVRRAIAELITAGMVHAQQGKGTFVSPPKLNNVVFELNNFNQEIKDFGL KLSTTLLGAHIVRADERLMRIFQLDSSTTRLLYFRTVVSAEDERLAYERKYTIYSKSK PILESNLQDPTLSGLVTANNDVLPVSTKKVLQVSVTTAEEAAILGIGVNAPVFVIEET LYDLENKPVGWSKSIYRGDRYQLTGYDGWLRKDNHGGINLG" gene complement(3144655..3144825) /locus_tag="Dhaf_2931" /db_xref="GeneID:7259939" CDS complement(3144655..3144825) /locus_tag="Dhaf_2931" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459390.1" /db_xref="GI:219668955" /db_xref="GeneID:7259939" /translation="MSEEDKVPSISPGTCLPWEQVLKDYGPPSGDESLIRDQWEQLDA FAYLYLWWWVQR" gene complement(3144859..3146052) /locus_tag="Dhaf_2932" /db_xref="GeneID:7259940" CDS complement(3144859..3146052) /locus_tag="Dhaf_2932" /inference="similar to AA sequence:KEGG:Moth_0386" /note="KEGG: mta:Moth_0386 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459391.1" /db_xref="GI:219668956" /db_xref="GeneID:7259940" /translation="MASATTIMNSESLYQERLTRYLTAMAGKKPDKVPIRLQLSEFMA KYAGLELQEVYYDLDKNIEAADKILADFDVDVIMGGPSLWWGTLHDAVGAKYLKFAGR QLAPNQQFQFVEKEYMVAEDYDAFIANPTQWILESFLPRIHSEFSEPGSFRANLALIK GAAGMVMVNERNKQAVAHWAKDYGMPLGVSGMVKAPFDTLGDTLRGLKGIMRDLRKRP EKILSALEVLVPHNIYYGLATSEGERLLPVFLPLHRGSYPFLNPHEWDTFYWPPLKKV IEGLWAQGKRTMFYAEGNWNPYLEKIVELPAASIVFHVDQTDIAKAKAVLGHKFCISG NVPNSLMAYGSPAQVSDYVKGLLHDYAADGGFIMDTAGIMQTDVKVENVIALIETTRQ YGVYT" gene complement(3146132..3150379) /locus_tag="Dhaf_2933" /db_xref="GeneID:7259941" CDS complement(3146132..3150379) /locus_tag="Dhaf_2933" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: drm:Dred_1288 putative CoA-substrate-specific enzyme activase" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002459392.1" /db_xref="GI:219668957" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7259941" /translation="MTKVLNVGLDVGSTTVKMIILSPEQGIVYKQYLRHFSNIKDTVL SMLEDAKPILDGQLMTMMIAGSGGFNLAKKLGIPFVQEVIAGTAAVKKMIPQTDVAIE LGGEDAKITYFGESIEQRMNGTCAGGTGAFIDQMASLLQVDAEGLNELAKNYKTIYPI ASRCGVFAKTDVQPLLNEGAAKEDVAVSVLQAVVNQTITALAQGRPIRGRVAFLGGPL FFLSELRQRFIETLKLEGDYAVFPEDAQYFVAIGAALVARDEQAFPSQTVYDNAPHIN SITQDEKAIAEPLFADQAEYEAFRERHARHKVNRKDPQGYTGHAYLGIDAGSTTTKVA LIDDEGGLLYSYYGSNLGSPLESTIGALKEMYSQLNPGITIRNSTVTGYGEQLIKTAL KVDIGEIETVAHAKAADFFLPGVNFVLDIGGQDMKSLVIKNGVIDSIMLNEACSSGCG SFVETFANSLNMDVKEFARIGLESQNAVDLGTRCTVFMNSKVKQAQKEGATVSDISAG ISMSVIKNALFKVIRLRNTEELGEKIVVQGGTFYNEAVLRSLEKLLGREVVRPDIAGI MGAFGAALIAKERCDLGHKTELLPAEQLESFATETTMKRCGLCGNNCLLTVKHFSNGE NFISGNRCERGAGQEKVKTELPNLYDYKYQRVFRYKPLSAQEASRGVIGIPRVLNIYE DYPFWYTFFTELGYRVVLSGRSTKALYESGMDTIPSESECFPAKLVHGHIVDLVKKGV KKIFYPSIPFNVKEDSEANNHFNCPIVTSYPETIRANMDILKEENITFYQPFLPIDSP KHMRKRLIEELSKREGLTPREIAQAMDKAYGELANYKKDVRQKGEEALHYMETHGSKG IVLAGRPYHIDPEIHHGIPELLQGFGLVVISEDAIRHMTNPERPMRVVDQWMYHTRLY AAAQFVAAKPDLELIQLNSFGCGLDAVTTDQVSEILERYGKIYTVLKIDEITNLGAAR IRIRSLLAAVQERDKRNFRPEKLYDPEGRVIFTEEMKKNYTIIAPQMAPHQFQFLKTG FEKAGYRIEVLPSVDRGAIDEGLKHVHNDACYPTIIVVGQLLEALKSGKYDLNRTAVL ISQTGGGCRATNYIAFIRKALKDTGMDQVPVISLNASGLEANPGFKITAKMLPDLLWG IVYGDLLMNVLHRVRPYEKVPGSANALYDQWVEKCQEALRRGDKKEIKANIYKIVADF DSLEIYEDRVKPKVGIVGEILVKYHPTANNNLVELLEAEGAEVTQPDLMGFLLYCAYC YKIKFDVLSGSFKAMFNGMLTVKVMEYYRKDMRKALAASRRFTPPAAIEEIARSAEEH ISLANQTGEGWYLTGEMVELLHSGVMNIACLQPFGCLPNHIIGKGMIRSLRRSYPKAN IAVIDYDPGASEVNQLNRIKLMLSVAKENMKTGEVAK" gene complement(3150798..3151973) /locus_tag="Dhaf_2934" /db_xref="GeneID:7259942" CDS complement(3150798..3151973) /locus_tag="Dhaf_2934" /inference="protein motif:PFAM:PF01471" /note="PFAM: Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding LysM; KEGG: bha:BH1295 hypothetical protein" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding domain 1 protein" /protein_id="YP_002459393.1" /db_xref="GI:219668958" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7259942" /translation="MERGVFMNYVVKPGETLMDIACMFNTTVEELLMLNPQITDPMCL FPGQVICVPTQPCSMHPMHPMHPMHPQMPMEGQMMAQGQPCPVLRQGSQGPSVVHLQQ LLTSHGFSPGAIDGIFGPRTHAAVVAFQGSRGLVQDGVVGVKTWTALGVNCMTPQPSP CPTLRQGATGPSVVQLQQLLTSHGFSPGAIDGIFGPRTEAAVIAFQGSRGLVQDGIVG VRTWTALGVNCMTPPPPPPPQNCPTLRQGSRGPSVVQLQQLLTARGFNPGAADGIFGP RTEAAVIAFQRSSGLTPDGIVGIRTWTALGVTCTTPPPPPSQNCPTLRMGSRGASVKE LQSLLKAQGFSPGNIDGIFGSRTQAAVIAFQKSRGLVQDGIVGIRTWTALGVNCRKN" gene complement(3152040..3152384) /locus_tag="Dhaf_2935" /db_xref="GeneID:7259943" CDS complement(3152040..3152384) /locus_tag="Dhaf_2935" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459394.1" /db_xref="GI:219668959" /db_xref="GeneID:7259943" /translation="MRILEKSRDHLHAKIEVWASGGWFRCETISLSFPNRVDIRYYQG VVIGESWWDLEELENGGTKVSYSIALEPHGRVMGFVAKMINISTLHSFQFQRVLKRLH RHLDSLYLKEPK" gene complement(3152495..3152911) /locus_tag="Dhaf_2936" /db_xref="GeneID:7259944" CDS complement(3152495..3152911) /locus_tag="Dhaf_2936" /inference="protein motif:PFAM:PF04304" /note="PFAM: protein of unknown function DUF454; KEGG: rci:RCIX1720 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF454" /protein_id="YP_002459395.1" /db_xref="GI:219668960" /db_xref="InterPro:IPR007401" /db_xref="GeneID:7259944" /translation="MKMMLIGIGTLCVVLGIIGVFLPVVPTTPFLLLAGACYMRSSPR LHKRLLASKWLGSYLKDYYENKGMTLHAKAVSISCLWLSLTISMFFVEIIGVRLLLLG IGLAVTLFLLSRKTKKSETCANPCGDVNRQKGTTKE" gene complement(3152956..3153294) /locus_tag="Dhaf_2937" /db_xref="GeneID:7259945" CDS complement(3152956..3153294) /locus_tag="Dhaf_2937" /inference="protein motif:PFAM:PF03960" /note="PFAM: arsenate reductase and related; KEGG: cbf:CLI_1157 ArsC family protein" /codon_start=1 /transl_table=11 /product="arsenate reductase and related" /protein_id="YP_002459396.1" /db_xref="GI:219668961" /db_xref="InterPro:IPR006660" /db_xref="GeneID:7259945" /translation="MNIQIYGTRKCFDTKKAERYFKERNIKFQFIDLNEKALSKGELQ SVKSSVALNELINKEGKDYKALNLDQIRGLEMREELLLTHPKLYRTPIVRNGRKATVG YQPEIWKEWE" gene complement(3153552..3154502) /locus_tag="Dhaf_2938" /db_xref="GeneID:7259946" CDS complement(3153552..3154502) /locus_tag="Dhaf_2938" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459397.1" /db_xref="GI:219668962" /db_xref="GeneID:7259946" /translation="MSWRTLYHKPELGVMEMFPKSKTLKIKTMRSPAEAIEFLQEITE GLANADKHSLEDFILYLRQRADDIQFKYYKARCLYMMIPPEDSLTFWVCYTLGRLPET IRFANFEGEVLELLKVLSLAEQSPPAWKQGNGLKKDVLGKEMNCALSFLKEEYPVFFS SLTKNPLLVPVLGFRLRLREGSLMTIPRLHCLGVFQPNRNEEELLLPILHALAHILHY SLTEDAKVMPPGFTNMVKQIFDDYQMNPEDGGEFFAELFVASLLYDTEYMPLVAYMEL CHEDQAVIRNYFTWLETIYASSLQDNMLRVIHQWDELKRA" gene complement(3154540..3156759) /locus_tag="Dhaf_2939" /db_xref="GeneID:7259947" CDS complement(3154540..3156759) /locus_tag="Dhaf_2939" /inference="protein motif:PFAM:PF00512" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cdf:CD2288 two-component sensor histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002459398.1" /db_xref="GI:219668963" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7259947" /translation="MDIKSRSFSHSLIAKALAFVLVIFCFTQVVTLVLNVINRSHFGV ALEKSYYLGEGFINESNNIISDLRSLSRYKSEENILAGGSVSEDRLRNRIDSLYWEFQ VNSDRRSTVNSNSTMNSNSAVVEENVDEGSSQKPPSTSSVTSPTQPGIYNPNLSDREN YQIFLEAYKEEIAKEKERLIQEDLYYYQTTLQRLASYKGLNYFLKAGELELTNQAELS KEEYTSYPAYMLFEGFIQNVYPQEIKENPRFYQIAPDAYVQDYPDVLYIGFEDEFLKP RIAEWQEDKEVANHALYQIAAYLAGLMASFIYLLIVWGRNSRHDQEVHLNTLDRLYND FNILFCLGLISSWFILGFNFYQMQNAALIYPMTLAIATLGLILVLSLVKHIKNKTLLK HTLVYTIFHKLFSGIKAIYDSGSLGVKVAVLVIGYPLCIAITFFMFPITIGVAIWLSF KKVKEFKAIKEGVRRVKDGDLATMINIKGKGEFAQLAGDINSITDGLNKAVENEIKSE RLKTELITNVSHDIRTPLTSIITYVDLLKTEEDPEKIKDYVEVLEQKSQRLKVLTDDL FEAAKASSGDIPVTFERIDIVSLLTQGLGEVDEKIQERGLDFKFNYPRERMWVKADGR LLWRAIENLLSNIFKYALAGSRVYIDLEDAGPGIRLTIKNISAYELNISSTELMERFK RGDESRSSQGSGLGLSIVTSLIEIQKGSFTIEVDGDLFKAMIFLYKDDSKETPLSPQ" gene complement(3156734..3157420) /locus_tag="Dhaf_2940" /db_xref="GeneID:7259948" CDS complement(3156734..3157420) /locus_tag="Dhaf_2940" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_2813 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002459399.1" /db_xref="GI:219668964" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7259948" /translation="MNILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQT VHLVIMDIMMPQMDGIRALMKIREERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPF NPLELIARVKSQLRRYVTLGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYK ILKLLTANAGRVFSIDQIYENVWNEAAFSAENTVAVHIRKIREKIEINPKEPKYLKVV WGIGYKIEKL" gene complement(3157999..3159171) /locus_tag="Dhaf_2941" /db_xref="GeneID:7259949" CDS complement(3157999..3159171) /locus_tag="Dhaf_2941" /inference="protein motif:PFAM:PF01979" /note="PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mta:Moth_0462 amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_002459400.1" /db_xref="GI:219668965" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7259949" /translation="MFISCSGEKTILAVPEQGSAIIGGYWTPDSGRVKGPVQLKWEEG RVSSLCPYSDHRGRSKSSGEEDFAWQPYLLMPGFIDSHVHLALDSIDFYQCLENWHNP ALMEKVIQDNLRRYLESGVVAVRDGGDLPGFAWSAKKRLEREEWQGPRVVSVREAVAR QGMYGRFLGRGFSSLQDWHRIKEDFFRQGADQLKIVVTGIISFSQYRQVGTVQWSVEE LKELTASAHARGILVMAHASGEEGISRVIEAGVDSIEHGYYMTSRHLRQMKAQGIAWV PTVAPIGNLLKYPTGRYSEQEIATLSEILKGHLSRIKEASDFGVRLGVGTDAGAYSVP HGSSFLDEMLWLREAGIPEEKVYCLATQENARICGLPEYGKLEVGTPLNCLQLKEL" gene complement(3159183..3159590) /locus_tag="Dhaf_2942" /db_xref="GeneID:7259950" CDS complement(3159183..3159590) /locus_tag="Dhaf_2942" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: ppd:Ppro_1137 hypothetical protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_002459401.1" /db_xref="GI:219668966" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:7259950" /translation="MANLEALGSSNIWKYLGMTIVTNEQGKKGVKITTTDKFKQAHGS VHGGIIATVIDTAMGVAVNEAIGPDRYAVTVELKVNYLLPVVDSDIYAYAHLVKEGKR LFMGTVNVYDEDGKLVAIGSATFSMITRRKEQL" gene complement(3159605..3161299) /locus_tag="Dhaf_2943" /db_xref="GeneID:7259951" CDS complement(3159605..3161299) /locus_tag="Dhaf_2943" /inference="protein motif:TFAM:TIGR02289" /note="TIGRFAM: oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: bwe:BcerKBAB4_1252 oligoendopeptidase, M3 family" /codon_start=1 /transl_table=11 /product="oligoendopeptidase, M3 family" /protein_id="YP_002459402.1" /db_xref="GI:219668967" /db_xref="InterPro:IPR001567" /db_xref="InterPro:IPR011976" /db_xref="GeneID:7259951" /translation="MKFKDFPYSRPDLEKLKGEFKTLLEQFKGAESFHEQDRLLMAIN SLRGKFDSMSQIASIRQTIDTNDTYYEREQEFFDENLPIYQGLISEFYQVLLDSSFRR ELEQKWGKQLFRIAELTLKTFKPEIIEDLQAENKLSTEYTKLIASAKIYFAGEERNLS GLGPFLQSTDPVLRKRAHEAKYAFFAEHEETLDTIYDQLVKVRTRIARKLGYPNYVGL GYARMLRSDYDAQMVADFRKQVQEDIVPLTSRLRERQRQRLGLENLYYYDEKTSFNSG NPQPHGEPDWIIKQGRKMYGELSAETEEFFDYMVSHELMDLVTKKGKAGGGYCTYISE HQAPFIFSNFNGTSGDVDVLTHEAGHAFQVYSSRHHTLPEYQWPTYESCEIHSMSMEF FAWPWMELFFAEEADKYRFQHLSEALLFIPYGVSVDEFQHFVYENPDATPAQRKAAWR EIERKFLPHRNYEGNQYLENGGYWHQQGHIFGNPFYYIDYTLAQICAFQFWKKSRMNA QEAWQDYLRLCQVGGSLSFLDLVELGQLVSPFQAGCLKSVAETINQWLEQVDDRKF" gene complement(3161348..3161968) /locus_tag="Dhaf_2944" /db_xref="GeneID:7259952" CDS complement(3161348..3161968) /locus_tag="Dhaf_2944" /inference="similar to AA sequence:KEGG:FMG_0395" /note="KEGG: fma:FMG_0395 ribonuclease H-related protein" /codon_start=1 /transl_table=11 /product="ribonuclease H-related protein" /protein_id="YP_002459403.1" /db_xref="GI:219668968" /db_xref="InterPro:IPR002156" /db_xref="GeneID:7259952" /translation="MGIHKPKFYAVRAGRDKGVFSSWEECRKAIYGFSGAVYRSFPTL EEAQAWFKGETLSDPLKAEDDSLRDDRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYE DADVGKNPAAATMRNVAGEIAAALYAVKKASQLGVKIRILHDYAGIAFWATGEWKAKN EFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRD" gene complement(3162039..3162365) /locus_tag="Dhaf_2945" /db_xref="GeneID:7259953" CDS complement(3162039..3162365) /locus_tag="Dhaf_2945" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459404.1" /db_xref="GI:219668969" /db_xref="GeneID:7259953" /translation="MAENQESIIMSFFYDQESPSGVGFETIELLSQGKDTLCLAMDLA AKISDSLPEEAKAVMAEEGVPLYRIFTDQKGFWSEWCDTEALNVEEEMKKLLDRIASD LEQAAH" gene complement(3162470..3163411) /locus_tag="Dhaf_2946" /db_xref="GeneID:7259954" CDS complement(3162470..3163411) /locus_tag="Dhaf_2946" /inference="protein motif:PFAM:PF02163" /note="PFAM: peptidase M50; KEGG: cbe:Cbei_0437 peptidase M50" /codon_start=1 /transl_table=11 /product="peptidase M50" /protein_id="YP_002459405.1" /db_xref="GI:219668970" /db_xref="InterPro:IPR008915" /db_xref="GeneID:7259954" /translation="MSEEGWAIDELNQENRREKDSSYSSVYNGAEETIVGQDEHADDY VIDEQNIKSKPGNKKGLWAAAAFAIPLLTKGKFIILFIVSKLKFLFVFLKLGKFATTA VSMVATIWIYAVFYGAKFALGFVALLFVHEMGHYLTAKRVGLAVSGPVFIPFVGALIG MKENPKDAVTEAQVAYGGPLFGSLAAVLCLAFYWLTGYELALVLAYVGFFLNIFNLLP VHPMDGGRIVSAVSPYLWLVGIPVLLYLMITSFNPILLIVVILGVSQVYKLWKNRHEL SIYYEVPLRERVQFGILYFGLVGSLAMGLTYALELLA" gene complement(3163424..3165748) /locus_tag="Dhaf_2947" /db_xref="GeneID:7259955" CDS complement(3163424..3165748) /locus_tag="Dhaf_2947" /inference="protein motif:PFAM:PF06733" /note="PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: amt:Amet_4220 DEAD_2 domain-containing protein" /codon_start=1 /transl_table=11 /product="DEAD_2 domain protein" /protein_id="YP_002459406.1" /db_xref="GI:219668971" /db_xref="InterPro:IPR006554" /db_xref="InterPro:IPR006555" /db_xref="InterPro:IPR010614" /db_xref="InterPro:IPR014013" /db_xref="GeneID:7259955" /translation="MDKELRVSVRTLVEFVLRQGDLRMGFMSGSRMAEGIYAHQYLQK ERGADYQPEVTLRTTAYQDGFSLEIHGRADGIFRNESGVVIEEIKSTSLDLDLIDESY NNLHWAQAQCYAYIVANQEDLAQVQVQLTYIQLETHELKEFRKSLSREELEFFFKDLV ERYCTWAHRLSAWTEQRNESISRLEFPYPAYRKGQRELVVAVYKTIKEKHKLYVQAPT GIGKTLGTIFPALKCLLEGLETPIFYLTAKTITRTVAEGSLLMLQQQGLSLKRVTLTA KDKVCFCPECECTPEDCSYAKGYYDRLGPALEDIFERDHWNREQIENCARNHGVCPFE FSLELTNWADLVICDYNYVFDPRVFLKRFFLEGGDYAFLIDEAHNLVERAREMFSAQL NKEEFLHLKNLVEDQEPVLGKRLQTVNKNFLKLKKQGLEVEKDAPTALYSSLERVVNE AEKFFKKEETPPWKEKLTELYFNIQAFLHTAESYDEHYLTYYQYPEQDVRVKLFCVDP SQQLAQVLNKGRAAVFFSATLSPLEYFIQVLGGEKESYKLQLPSPFPHENLCLMLQKQ ISTKYNQRSLSLDPIVEGITQLVQGKTGNYLVYFPSYEYLERVRERLLQAHPEFKVLT QTMGMTEADREEFLEAFQEEPRESLVGLALLGGIFGEGIDLTGERLSGAVIIGVGLPQ IGTERDIIRAHFQERYGQGFEFAYMYPGMNKVLQACGRVIRTEQDRGAILLIDERFAR LSYRRLFPKEWHAIHTLQDNSRIPSLLKAFWESS" gene complement(3165765..3167054) /locus_tag="Dhaf_2948" /db_xref="GeneID:7259956" CDS complement(3165765..3167054) /locus_tag="Dhaf_2948" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: gme:Gmet_2078 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459407.1" /db_xref="GI:219668972" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7259956" /translation="MHNIARELNDQIRAENPHVYELLSDLGRNLYYPKGILTQTDEAT EKAYRFNATIGMATEKGQPMFLPVIQETLSQYNPQDIYTYAPPAGKSKIRAVWREKLL KDNPSLQGKTMSQPIVTNALTHGLSIAADLFLNPQDVLVLPDKLWGNYTMIFGTRRNA EMRNFTFFTENGEFNTQGMKEALLAQKAQGKAVLLLNFPNNPTGYTPVEKEAQAIVEA LLEVAEQGINVAVLVDDAYFGLFYEDSIKESLFGRLANIHPRILAVKVDGPTKEEYVW GFRIGFITFGDASSVVCDVLENKTKAIIRSTISNASHPAQTFVLHALASPDFEKQKAE KYKIMEGRALKVKEILNRGDYQDLWDYYPFNSGYFMCLKLKGVKAEELRLHLLHNYGV GVIALGESDIRVAFSCVEEEDLEELFKLIYQGTKDLV" gene complement(3167277..3167624) /locus_tag="Dhaf_2949" /db_xref="GeneID:7259957" CDS complement(3167277..3167624) /locus_tag="Dhaf_2949" /inference="protein motif:PFAM:PF01751" /note="PFAM: TOPRIM domain protein; KEGG: bld:BLi03460 YusF" /codon_start=1 /transl_table=11 /product="TOPRIM domain protein" /protein_id="YP_002459408.1" /db_xref="GI:219668973" /db_xref="InterPro:IPR006171" /db_xref="GeneID:7259957" /translation="MAKVIIVEGKTDKERLQEVLAEPVEILCSYGTISYEKTEEWATQ LEDSEVYLLVDADDSGEKIRKSLNQALPNIHHLYTHRMYREVATTPLDVLAQVLDHAH FEVKEIRPEEELF" gene complement(3167734..3168363) /locus_tag="Dhaf_2950" /db_xref="GeneID:7259958" CDS complement(3167734..3168363) /locus_tag="Dhaf_2950" /inference="protein motif:PFAM:PF00929" /note="inhibitor of the KinA pathway of sporulation" /codon_start=1 /transl_table=11 /product="sporulation inhibitor KapD" /protein_id="YP_002459409.1" /db_xref="GI:219668974" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="GeneID:7259958" /translation="MDFLVVDFEFSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDK TFNAFVKPRFWPRLAEESYGITGIRQEDVDQGILLEEAIQHLQKLAHPEAYVVAWGDA DRKILGNVCEKYGLKYPFVWENYIDLAEQYKHYRSLDHLISLKKAIEENSIEQIGILH SALDDAINAAQVMARMMSEGWMVKTGEQAHGSEEKRIAEAAQKNSKIII" gene complement(3168468..3169691) /locus_tag="Dhaf_2951" /db_xref="GeneID:7259959" CDS complement(3168468..3169691) /locus_tag="Dhaf_2951" /EC_number="3.4.24.84" /inference="protein motif:PRIAM:3.4.24.84" /note="PFAM: peptidase M48 Ste24p; KEGG: drm:Dred_3217 STE24 endopeptidase" /codon_start=1 /transl_table=11 /product="Ste24 endopeptidase" /protein_id="YP_002459410.1" /db_xref="GI:219668975" /db_xref="InterPro:IPR001915" /db_xref="GeneID:7259959" /translation="MKTRSTMIWIPLIALTLLFSLVYLWYALFPGSIRPEAVQLFGME QIQQGRDYSKGIRISYILNFMFQVLCLIWILASGRGSRLSRACEQWARGRKWLGYLAF YLMIWLLLTLVSLPFTFFSGFYWQQLWGFSTQTFLSWWGDFLKESLLDLVMGGVGVCL LFLAFRLWPKTWWLICGLLFSLWLVIQSLLWPVLVAPLFNHFQPVANPEIISMVNELA NKADLAIDEMLVMDASIRTTKANAYFAGVGETKRIVLYDNLLNQYPLEEVKAVIAHEM AHWQKGHIARGLFLGTLGSFLVWGGAYLVLRREMSRHHVPPLVWAVFLLFVVLVSFVS APLQNSISRQMEIEADQTSVLLTGNPQGAIQLQMNLALKNRSDLSPPGFIEWFSYTHP SVLTRIEKINEVGGG" gene complement(3169791..3170231) /locus_tag="Dhaf_2952" /db_xref="GeneID:7259960" CDS complement(3169791..3170231) /locus_tag="Dhaf_2952" /inference="protein motif:PFAM:PF04657" /note="PFAM: protein of unknown function DUF606; KEGG: gka:GK1674 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF606" /protein_id="YP_002459411.1" /db_xref="GI:219668976" /db_xref="InterPro:IPR006750" /db_xref="GeneID:7259960" /translation="MKGLFVLVALCGGMVMGIQTPINGALGKRIGGIEGALISFAVGL LCLSLAVLFLGKGNLSQVTHVPKPWLIGGALGAIGVTCSILSVQRIGVAGTLTAAVVG QILVGLTIDHFGLLGVRRTPLDFSRVLGVILMLSGLYFVLRQNL" sig_peptide complement(3169791..3169844) /locus_tag="Dhaf_2952" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.703) with cleavage site probability 0.360 at residue 18" gene complement(3170389..3170754) /locus_tag="Dhaf_2953" /db_xref="GeneID:7259961" CDS complement(3170389..3170754) /locus_tag="Dhaf_2953" /inference="protein motif:PFAM:PF07561" /note="PFAM: protein of unknown function DUF1540; KEGG: cac:CAC0521 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1540" /protein_id="YP_002459412.1" /db_xref="GI:219668977" /db_xref="InterPro:IPR011437" /db_xref="GeneID:7259961" /translation="MSVQLKCDAVNCVYNRSHLCSAEEIEVQGGETTGGDATFCGTFS SKSLGNFVSSLGNMNYSGSLKQAVSAEPIMDPKVHCNAVNCTYNDQRYCHADQVEIRN EVSHTAEETECQTFYPKMS" gene complement(3170905..3173529) /locus_tag="Dhaf_2954" /db_xref="GeneID:7259962" CDS complement(3170905..3173529) /locus_tag="Dhaf_2954" /inference="protein motif:PFAM:PF01580" /note="PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: hmo:HM1_2337 FtsK/SpoIIIE family protein" /codon_start=1 /transl_table=11 /product="cell divisionFtsK/SpoIIIE" /protein_id="YP_002459413.1" /db_xref="GI:219668978" /db_xref="InterPro:IPR002543" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259962" /translation="MSKRKRKTLPVRQVVAIVLAILGFLALLGELGFTAVGKGLYNLM KYPLGEKVWLAPLVFFVLAIGVWVSALWGRKQGARPKGKQSYPRGKTREKVKRTNLQE ERGEETFFPQGMELPKGKLVPLKGFKEYFSTDLEMKPMEPLTELDDLGRDFDTYFTEG KDISFKPIGTRLTTLQGFSSYFDEVSSEIEEEIRNIEPALPSKRQWEKPDITGLEPDR YPGQVAQLLKNERRMPQGISTEERAALLGKPLQTPAYNSEPSREEPWSEAAHKKENPK VLQEKMDLVRSIAPSLVKKESVKKIDFEPLAKAPAYEEATLSEASLLSEEEPIIREEL ISREEPRIQEDLVPQFEQKIEEQVPAINLEGNAVNFHGENEEDKAIEPKLKTTEALKK AKAWSLPSFALLDPLPQVTVVHDQDTQKHLEKVLEDFGVQAKVIRVARGPVITRYELA PAPGVKISRIVNLADDIALGLAARDVRIEAPIPGKSAIGIEVPNKHPRAVPFREVLET PEFKEGSAKLRIALGKDIGNQSIVANLAKMPHLLVAGATGSGKSVCITAIINSLLFNT RPDEVKFLMVDPKMVELSLYNGIPHLLAPVVTDPKKASAALKWVVKEMETRYELFAAS GVRDIERYNQMKAAEAGQESGAKAEPLAPAMPWIVVIIDELADLMMVAADEVEEAICR LAQMARAAGIHLVIATQRPSVDVITGVIKANIPSRISFAVSSQIDSRTILDSTGAEKL LGRGDMLYSPQGMNKPMRVQGCMVADDEVQKVITHWKSQGSPEYLDPEGFLNAGSSGK SEGVGPDDELFMEAGHLIITTGMASVSYLQRKLKLGYARAARLIDLLEEHGVVGGYEG SKPRQILLTMDEFEERFG" sig_peptide complement(3170905..3170991) /locus_tag="Dhaf_2954" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.538 at residue 29" gene complement(3173672..3174643) /locus_tag="Dhaf_2955" /db_xref="GeneID:7259963" CDS complement(3173672..3174643) /locus_tag="Dhaf_2955" /inference="protein motif:PFAM:PF04307" /note="PFAM: membrane-bound metal-dependent hydrolase; KEGG: amt:Amet_3128 membrane-bound metal-dependent hydrolase" /codon_start=1 /transl_table=11 /product="membrane-bound metal-dependent hydrolase" /protein_id="YP_002459414.1" /db_xref="GI:219668979" /db_xref="InterPro:IPR007404" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7259963" /translation="MGVLNIDPITHGLIGAALANLSGHPIQLNDPIFIGCTLGAMVPD LDIVTHLKGRLNYLLKHRGASHSFLALGGMALGLGTLVHYTFPTSSWLVVVFWTLIGT LSHGIADLLNSYGAQLLWPFYKKKFTVNMAMVTEPVIFVLFFSSFIVSFTRPEFGLYS SLTTFAVALIYLFIREMDRYKTRQRLEETFVVPRGQVKVLPAMYRPFSWAFLLYEKDT VSFGVMKKKHAKILKVLPQWDSEDPLINNALEGELADIFNRFTPYFHVVRTDSPETKV QFVDLRYWDKEDFLYTGEVCICPDGKITEERFYTFGSRNSQGIVLEY" gene complement(3174898..3175785) /locus_tag="Dhaf_2956" /db_xref="GeneID:7259964" CDS complement(3174898..3175785) /locus_tag="Dhaf_2956" /inference="protein motif:PFAM:PF04972" /note="PFAM: transport-associated; KEGG: chy:CHY_0056 putative osmotically inducible protein" /codon_start=1 /transl_table=11 /product="transport-associated protein" /protein_id="YP_002459415.1" /db_xref="GI:219668980" /db_xref="InterPro:IPR007055" /db_xref="GeneID:7259964" /translation="MQKSRPEQDVHEDIKILIQTHFGESGQGIHIEVKGDKVSLWGTV DSLAEKDFIGQRIGRIDGVKELDNSLTVANDGKITDKDIEKQVVERFAQSNFEEIMHL GCRASKGIVTLLGHLETQSSERLAKRIASQVRGVKEVRSEIDFLEKAVDDATLVNRVE NALVASPWVNAHEIKTSARNGLITLTGMVNTQEEMEWAVDTAYQVPGVKAVVSEIFSR HRSQGEDLYMTEQLVRKLGQHGMTSQLVRAFVQDGIAYMTGEVYSDEDRRWAESMGQH VEGIKSINSSIKVAAHSSK" gene complement(3175882..3176724) /locus_tag="Dhaf_2957" /db_xref="GeneID:7259965" CDS complement(3175882..3176724) /locus_tag="Dhaf_2957" /inference="protein motif:PFAM:PF02811" /note="PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: hmo:HM1_2562 phosphoesterase PHP, N-terminal, putative" /codon_start=1 /transl_table=11 /product="PHP domain protein" /protein_id="YP_002459416.1" /db_xref="GI:219668981" /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="GeneID:7259965" /translation="MAPTAIDLHIHTIESDGSLSVAGVIQEAAERGVRVLALTDHETT NGVPEAMELGQKHNLNIIPGVELITAFKGKEVHLLGYFSYAAMMHSDLQSRLKELRQQ RTYLAFEMVKRLQKDGFTLKWAEVEKIANPEGAVSKGHIMRALHEHENGTIQWPVIAK LFQPYGIAYLPFLEHPFEEAVDLIYTCGGVPVLAHPGLLRDDRMVGELLSYLPMGLEV YYGYWEQREALIQNYKTIAQDKAILTTGGSDFHGLFGPVKLGEIEVPEQCSRELQTFL KLDF" gene complement(3176913..3178499) /locus_tag="Dhaf_2958" /db_xref="GeneID:7259966" CDS complement(3176913..3178499) /locus_tag="Dhaf_2958" /EC_number="3.5.1.81" /inference="protein motif:PRIAM:3.5.1.81" /note="PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase" /codon_start=1 /transl_table=11 /product="N-acyl-D-amino-acid deacylase" /protein_id="YP_002459417.1" /db_xref="GI:219668982" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR012855" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7259966" /translation="MKTLLKNGFIVDGSAAPGYYGDLLIENDKIMSIGNLGDVEADRV IDVEGHVIAPGFIDTHSHSDIQILTDPEVLPKVMQGITTEVLGQDGISLVPLPQQYIQ SWRKNLAGLDGDSDDIHWEDLATTEDYLQAIEEARPGLNACYLVPHGNIRMKAMGLDN REPTEEEIQKMREITRREMESGAFGVSTGLIYMPCAYSGMNEVVEICKVAAEYDGVFV VHQRSEADDIINSMKEVIEIGRQSGIKVHWSHFKVCGKPNWSKIDRQIELLKEARAEG IQVSFDQYPYVAGSTMLGVILPPWAHDGGTDKLLKRLEDPELRTKMIHDIEHGIPGWD NFVDFAGLDGIYVTSVKNKKNEDVIGLNLVQIGELRGKDPYDAVFDLLYEEENAVGMY DYYGKEEHVIRFMTMPEQNVCTDGLLGGKPHPRVYGSFPRVLGKYVREQKALSLEEAV RKMTGKPAEVFGLKERGLLREGYFADICIFDRDTIIDKGDFTNPARYPEGIDYVLING QIVIDHGKHTGFRAGSVLRR" gene complement(3178626..3180032) /locus_tag="Dhaf_2959" /db_xref="GeneID:7259967" CDS complement(3178626..3180032) /locus_tag="Dhaf_2959" /inference="protein motif:PFAM:PF02133" /note="PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: drm:Dred_0262 permease for cytosine/purines, uracil, thiamine, allantoin" /codon_start=1 /transl_table=11 /product="permease for cytosine/purines uracil thiamine allantoin" /protein_id="YP_002459418.1" /db_xref="GI:219668983" /db_xref="InterPro:IPR001248" /db_xref="GeneID:7259967" /translation="MNSPNRSASLRSPELMPAGKSERTMSLADYFILWAGMTINVVAF SLGAQYYNNGDGLSAWTMVFVILIGYGIVTALTALIGDIGTLYGVPFAVYARAPFGYK GSSIAGLLRAVPALYWFGFQTWVGAAALNYIMEILFGFSNLTLMIIAFAVFQVVNAMY GLKAMAKFDWIAIPALAILFVAIAIAIGNAYGVTVTDIMATKGNGNMSVIYAISGIAG GWITMALNGSDLARQIEHVPNYEKKGLLARNKRALIGQFFGLMVIGVICMLIGMAAGI TTGEWDLNAICVKLFDSNFGLILALIAVVFAQWSTNTVGNLMPPSYVLISIFPKLNFK VASIICGVIAVAMQPWKIQNSGTFLVDMQVYISTMLGPVMGILLADYFIIRKCKLNVQ DLYTAGGQYQYNNGFNMSAVIALVAGFGLSFISSTYAFFIGLLVAPVVYVVLMKNFTM KKHDQKIGQVIEFNEDIQ" gene complement(3180080..3181504) /locus_tag="Dhaf_2960" /db_xref="GeneID:7259968" CDS complement(3180080..3181504) /locus_tag="Dhaf_2960" /inference="protein motif:TFAM:TIGR02033" /note="TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: drm:Dred_0261 dihydropyrimidinase" /codon_start=1 /transl_table=11 /product="dihydropyrimidinase" /protein_id="YP_002459419.1" /db_xref="GI:219668984" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR011778" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7259968" /translation="MYDLIIKNGTVVSPSSSTICDVAIKDDKIVGLGFYEAAEGIRTI DATGKYVMPGVIEAHMHCMAPFQGCLGANTFYQQSVSGAFGGVTMFMDFANVFPGKSV LEAVKERRAEMEESAIDFSVHGKFVKSPPELVEEIPQLAEYGVPTFKMFMTYKKEGVM IDEETMLKVFEKAKEVGGLPMLHCEDNTMAEDAIEKVKKIGDLSWVNFAKTKPQKCEA AAFERACRLAEYVDCPVMVVHTTHKEALDVARRAHESGFPIYVETGPHYLTLFDDNYE KEEGYLYLCSPPLRTPQDAEDLWQGLQDGTISVTGSDDCTFDTNEKAAFLEKDENGKY IQDFTKVVNGMSGLEVRLPILLSEGAGKGRLTINQVCALTSTNVAKIYGCYPQKGIIA PGSDADLVIVDMAQEVTLSKDILHNNISYCLHEGFKVKGYPIMTIARGKVIVENGEFR GEKGAGQFIKRKIDSKYLERFGLD" gene complement(3181586..3182773) /locus_tag="Dhaf_2961" /db_xref="GeneID:7259969" CDS complement(3181586..3182773) /locus_tag="Dhaf_2961" /inference="protein motif:PFAM:PF07687" /note="Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="YP_002459420.1" /db_xref="GI:219668985" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR011650" /db_xref="GeneID:7259969" /translation="MLNSERQGKVVELCSDLMRAKSMSGEEQDVVDIMEKFFRMHQFD TIKKDKYGNIIGCIKGNRPGKKILYEGHMDEVPVADPKVWTHDPFGAEIENGRIYGRG ATDMKGGLSAACCAAAFFAEDTNRDFAGEIYVAGSCHEECFEGVAARSISEIVQPDIV VICEPSHLDLRIGQRGRAEIVVETFGRPAHSSNPEKGVNAVYKMMQIIEGIKGLPVNN HPVLGKGILELTDIKSSPYPGASVVPQYCRATYDRRTLVDETKESVLAPIQDLIKKLQ ENDPELEAKVSYAWGSEKCYTGAVIEGERFFPAWLYNEGDDFVQAAYQELQKNNFSSQ ISTWQFCTNGSHYAGEAKIRTIGLGPSWEHLAHITDEYIELEQLYGAVSAYMSISKGL LDM" gene complement(3182798..3183166) /locus_tag="Dhaf_2962" /db_xref="GeneID:7259970" CDS complement(3182798..3183166) /locus_tag="Dhaf_2962" /inference="protein motif:TFAM:TIGR00004" /note="TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: drm:Dred_0264 putative endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="YP_002459421.1" /db_xref="GI:219668986" /db_xref="InterPro:IPR006056" /db_xref="InterPro:IPR006175" /db_xref="GeneID:7259970" /translation="MKEIRTAKAPGAIGPYSQGFISGDLVYTSGQIPVDPTSGDVAAG IAGQAEQSCKNVGAILEAADSDFSKVIKTTCFLTDMNDFAAFNEVYARYFVSKPARSC VAVRALPKGVLCEIEAIAEL" gene complement(3183190..3184392) /locus_tag="Dhaf_2963" /db_xref="GeneID:7259971" CDS complement(3183190..3184392) /locus_tag="Dhaf_2963" /inference="protein motif:TFAM:TIGR01747" /note="catalyzes the formation of pyruvate from 2,3-diaminopropionate" /codon_start=1 /transl_table=11 /product="diaminopropionate ammonia-lyase" /protein_id="YP_002459422.1" /db_xref="GI:219668987" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR010081" /db_xref="GeneID:7259971" /translation="MKEEIKIISFQRDKQKASDLTFLNLEEAEKVHSFHVSFPIYQKT PLRELKNTAQALGLGTVYVKDESYRFGLNAFKVLGGSYAIGNYIASKLGTDIRDLPYE KMVSEEVRSKLGELTFVTATDGNHGRGVAWTANQLKQRSVVYMPKGSAPERLENIRAE GAEASITELNYDEAVRLANRKAEENGWIMVQDTAWQGYEDIPRWIMQGYGTLGYEVYG QLKEKPTHIFLQAGVGSMAGAVTGFFASLYGEERPIIAIVEPNKADCLYLTAQADDGE RHFVTGEMNTIMAGLACGEPCSIAWEVLKDYADHFISCPDYVAAKGMRILGNPVQGDE RVISGESGAAPFGCVAEIMTNPLYKEIKDQLQLNENSRVLFFSTEGDTDQENYQAIVW DGKYPSCK" gene complement(3184636..3186408) /locus_tag="Dhaf_2964" /db_xref="GeneID:7259972" CDS complement(3184636..3186408) /locus_tag="Dhaf_2964" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: drm:Dred_0258 sigma-54 dependent trancsriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459423.1" /db_xref="GI:219668988" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259972" /translation="MASVLLEIQETVKKYTEIMAKISRVDVEVVDTELFRVAGTGMFA DHVNEDMSAEGYAYSHVIKEGRLQVIYSPGHELICNNCPKRDSCAEEIEIAMPIWASD QIIGVIGLVGSNAQQRNAILADEETYLGLIEQIANFIAAKAIEQIDRKEKESMLSTLA FAINNMEEGVLIVSRKHTITMANRAAKQQLMLNTLEGMRIMLSPTGDKLNGKTEYMLN VGAKTFRILGQINSLLKADDSYAELLSFTPTRDLNKKLYAMTAAVSEGIVVGNSQETI ALRTQIGKIANSTSTVLITGESGTGKEVVATAIWRAGDRKEQQFVAVNCAAIPESLLE AELFGYVKGAFTGADPNGRVGKFELANQGIIFLDEIGDMPLYLQAKLLRVLQERKITR IGSNHLISIDVRVIAATNKDIRTMIANGKFREDLYYRLNVIPVKILPLRHRLEDIPVL ANLFAQRYAVRLGKPEREISPAAMRALLEYPWYGNVRELENTVEYMVNMCNDQDVLGL ETLPKDFLVNEHTVIIQADSSYEKEKKHGSEEKVIPLQEVEQREIAKALRLHGMNTQG KKEAAKSLGISLATLYRKLEQFSN" gene 3186722..3187123 /locus_tag="Dhaf_2965" /db_xref="GeneID:7259973" CDS 3186722..3187123 /locus_tag="Dhaf_2965" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459424.1" /db_xref="GI:219668989" /db_xref="GeneID:7259973" /translation="MIMANENVDLTLTYEERAGDLLFLLGTILAFISNYQEEQALLTE NVSMVKPKDIDSAMSITAASWLFFLASILFTHVAIVRLEELGSTANLKTSLVLTRGTK LAVIGNLLKSAGFGIAAIAYQLKLFYYKYEF" gene complement(3187253..3187981) /locus_tag="Dhaf_2966" /db_xref="GeneID:7259974" CDS complement(3187253..3187981) /locus_tag="Dhaf_2966" /inference="protein motif:PFAM:PF01510" /note="PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: swo:Swol_1062 negative regulator of beta-lactamase expression-like protein" /codon_start=1 /transl_table=11 /product="N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD" /protein_id="YP_002459425.1" /db_xref="GI:219668990" /db_xref="InterPro:IPR002502" /db_xref="GeneID:7259974" /translation="MKIEWVGTPNYRQGRSGNQVFAIINHITAGRYPGCLSWMQNPAS QASSHYLVLKDGRILQLVKDEDTAWHAGLVNKPNWKLYNGKNPNLYTIGIEHEALEGE GLTDAQYQSTLWLHGQLLAKFPAIKPDSDHIIGHYRTDSVNRPNDPGAKFPWEQLFKD LKSKDLKGEEDMVDNLVIYADGDVGAALILSQKLGCPMVHKNSSNKYQAAQKHWVGVQ GTNDSGNSYYAGANRTETARAVLK" gene complement(3187984..3188280) /locus_tag="Dhaf_2967" /db_xref="GeneID:7259975" CDS complement(3187984..3188280) /locus_tag="Dhaf_2967" /inference="similar to AA sequence:KEGG:BALH_p0046" /note="KEGG: btl:BALH_p0046 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459426.1" /db_xref="GI:219668991" /db_xref="GeneID:7259975" /translation="MDFTIITALIGIVAALSGIILGWSARAKEAKREVRIDAEINTAI RTDMEYLKRGVDDIRIEQRAQGQRMDTMGERLTRVEESSKQAHKRIDRLEQKGE" sig_peptide complement(3187984..3188067) /locus_tag="Dhaf_2967" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.934 at residue 28" gene 3188514..3188891 /locus_tag="Dhaf_2968" /db_xref="GeneID:7259976" CDS 3188514..3188891 /locus_tag="Dhaf_2968" /inference="protein motif:PFAM:PF08000" /note="PFAM: protein of unknown function DUF1696; KEGG: ctc:CTC00414 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1696" /protein_id="YP_002459427.1" /db_xref="GI:219668992" /db_xref="InterPro:IPR012544" /db_xref="GeneID:7259976" /translation="MGIFSGMMGNASEIDTKEIESEVGPLLYDSEQITKAFKLIRDLI VFTNSRLILVDKQGITGKKIEYHSIPFRSITHFAVETAGHLDLDAELKIWISGNSSPI TKEFKKDKNIFEVQKALANSIAR" gene complement(3189241..3190233) /locus_tag="Dhaf_2969" /db_xref="GeneID:7259977" CDS complement(3189241..3190233) /locus_tag="Dhaf_2969" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cbt:CLH_2514 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459428.1" /db_xref="GI:219668993" /db_xref="GeneID:7259977" /translation="MKKFLFLFLLIPLVLSLAACGGEGVTAKKGETAEQSVEKALNAI KAADIEAASKYIDYNEIVNAGSTGTPDTEDEKKSEEMSKAILKNIEYKILESSEEEKT AVVKTEITNLDMSNVMAEFISQLFSLAFSGLNEEQLNEKSFEIFTNLVSSETKTVTKT VDINLSKSEEGWRIVGDDALADALTGGLVSFSDSMNGNNENSGNSDTDKLQEISNWLI GKVWNEGFVDIQHYIARGKSSTGQTLDIEFTLEQLDATMKKKADYDSFIGGLAEEQYS QIKSIWGRLSPEIDSLYDQIKGTPPVANDASNSFDTGKLEQYMDAFTDAVDDLN" sig_peptide complement(3189241..3189306) /locus_tag="Dhaf_2969" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.922 at residue 22" gene complement(3190677..3190750) /locus_tag="Dhaf_R0067" /note="tRNA-Trp1" /db_xref="GeneID:7259978" tRNA complement(3190677..3190750) /locus_tag="Dhaf_R0067" /product="tRNA-Trp" /db_xref="GeneID:7259978" gene complement(3190917..3191042) /locus_tag="Dhaf_2970" /db_xref="GeneID:7259979" CDS complement(3190917..3191042) /locus_tag="Dhaf_2970" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459429.1" /db_xref="GI:219668994" /db_xref="GeneID:7259979" /translation="MALFGTKGRDPKKKPEPAPKQHHRGDAIREDMEGFKDLYWP" gene complement(3191108..3192505) /locus_tag="Dhaf_2971" /db_xref="GeneID:7259980" CDS complement(3191108..3192505) /locus_tag="Dhaf_2971" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: pth:PTH_1355 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase" /codon_start=1 /transl_table=11 /product="PAS modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459430.1" /db_xref="GI:219668995" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:7259980" /translation="MGQQPKRVEIRDSRRIEEELKVLYNSIQEAIEVAGKDGTIQYVN PYFSRLTGISPYERIGKNIFELSPEGALARVLRTHEPIYAHRSTMEECDIEIIANAYP IVIEGNIEAALVVFQQLTETSRLGEEIEAAKQMIQALTTRVDQMASSSYTFDDVLGSH PDFAFIRNKARRSAETHSPIMIMGESGSGKELFAHAIHSGSTRSHKPFLKVDCANIPE SLLEVELLGYEKKSQDRASERKLGKLECASGGTLFLDEIGLLNDYLQDKLLHILLEKK FQPVDGTQVIELDIRIITATNRDLRTMVENGQFSPDLYHLLGGIEIQIPPLRMHKEDA LTYAQSFIYKANRKLGKHVIGITTQAEQLLLDYHWPGNIRELRNVIEMAMDSVEGDML NIKDFASLVEIVNKTEEIHYREPMALDELEKRMIRLALDRYGNSVEGKKRAAGVLNIS LATLYNKLKTLEDNV" gene complement(3192708..3194729) /locus_tag="Dhaf_2972" /db_xref="GeneID:7259981" CDS complement(3192708..3194729) /locus_tag="Dhaf_2972" /inference="protein motif:TFAM:TIGR00484" /note="TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: pth:PTH_1395 translation elongation factors" /codon_start=1 /transl_table=11 /product="translation elongation factor G" /protein_id="YP_002459431.1" /db_xref="GI:219668996" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004540" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="GeneID:7259981" /translation="MKTYDTMNLRNICLVGHGGAGKTSLTEACLFNSGAVTRMGKVPE GNTMSDSLPEEIKHKVSISTSLVPVEWQGCKINVLDTPGYSDFFGEVKSALRVAESGV VVLCGVSGLEVQAELILDLMEEQKLPRVIFINKLERENANFEKVLNQLTEAFPNMRFA PLTLPIGHEDQFQGVVDIIEQKAYIYENNASGKYTVKDIPSDLLSDVEHYREILAEAV AEADDDILTKYLDGETLSDDDLRQALKSALEKDLTVPVLAGSALKNVGIGNLLDFFVQ YAPVPQTKEEKSALIFKTLADPYVGKMSFIRVYGGKLQGDSMVYNAQKEKEEKISTPF ILRGKNQDPVQVVPAGDIAVVAKLQDAATGDTLCAKENPVQLEGIDLPVPRLPVAIAP KSKGDEDKLGSALARLAEEDPTMRVEKNVETKELILYGMGEMHVEILMEKLQRKFGVG VEMKVPRVPYRETIKKPVKVEGKHKKQSGGHGQYGHVWINMEPLMDGEFEFAEEVFGG AVPRQYFPAVEKGIREAMAEGVLAGYPVTGFKVTLTDGSYHSVDSSEMAFKLASIMAF RKGAEMAKPTLLEPISEVEIRVPEAYMGDVIGDINGKRGKVLGMEADGRFQVIKAHVP QSEMMRYAIDLKSMTQGRGSFDIRFLKYDEVPSKISEGIINELKAAQGS" gene complement(3194766..3195974) /locus_tag="Dhaf_2973" /db_xref="GeneID:7259982" CDS complement(3194766..3195974) /locus_tag="Dhaf_2973" /EC_number="2.1.1.63" /inference="protein motif:TFAM:TIGR01975" /note="KEGG: tpd:Teth39_1494 isoaspartyl dipeptidase; TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; Amidohydrolase 3" /codon_start=1 /transl_table=11 /product="isoaspartyl dipeptidase" /protein_id="YP_002459432.1" /db_xref="GI:219668997" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR010229" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7259982" /translation="MWTLIKNAKLFAPEPLQERDLLLVGNRIAALGDDLSLPPYAKGE VYDLHGHYLVPGFIDAHVHICGGGGEAGPSSRTPEVQLSQLTRAGITTVVGCLGTDSI SRSMEELLVKANALEEEGLTCFVYSGGYQADRMIFDTLRKDLVLIDKVIGAGEIAISD HRSAQPQKSELEHLAAEARVGGMLGDKAGVVHIHLGEGKRGLSPILKIIEETEIPISQ FMPTHINRKETLLEQGVEFLKAGGTIDLTAGCDDFEPHLQVPFVLKALYEQGLLNDRV TVTSDGNGSLPQFNEAGILVGMGIGSVHVLWRDIREAVLRYGIPLDTALRTITSNPAR ILQLKNKGMIREGFDGDLVALSDDLMIEQVWAKGRVMIRNRKPVVLGVYETSLASHLQ TVETPRLVKG" gene 3196301..3197839 /locus_tag="Dhaf_2974" /db_xref="GeneID:7259983" CDS 3196301..3197839 /locus_tag="Dhaf_2974" /inference="protein motif:TFAM:TIGR02900" /note="TIGRFAM: stage V sporulation protein B; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: drm:Dred_1761 polysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="stage V sporulation protein B" /protein_id="YP_002459433.1" /db_xref="GI:219668998" /db_xref="InterPro:IPR002528" /db_xref="InterPro:IPR002797" /db_xref="InterPro:IPR004268" /db_xref="InterPro:IPR014249" /db_xref="GeneID:7259983" /translation="MAKRTFIYGAVILLAANFLNRVLGFIYQYLIMTHIGGEAFGLFN MVFPMYMFALVFTTAGIPLAVSKMISEAVSLQNYSRARSIFRTSLLLLTCSGLVISVA LYIISPLLAERFFPDPRVLRLFLICTPAIFVVSVSSAFRGYFQGMQNMLPTALSQICE QLVRVSVGFFSAYTLLPRGIEWAASGLALGMLSGEIIGLFIIILQYKLQKTKKSSHQN ESLHPIQTMKELFHLAYPVTIGRLFSSGLSTVDAMLIPQRLQLAGYTAREATTLFGQL GGAVFTLLNFPSVFTFALATSLVPAISEAAARKQFQTVKLRSAQALRMTIFIGVPSLV ILFFFAEPFSAFFKSEGTSSILRILALGGIFSYLQQTSTGILQGLGKVQLPVIHSIIS AVIRIPILFILTASPQWGLKGTAVAYVVGFFISSTLNLAAIVHYTGMPVDLREFLLHP LMGGIGMMLAFRLFHPFFAFHPLAFLLEIILGAVLYFAILFFNGGINRDDLQRIPWLG KFLR" gene 3197793..3198260 /locus_tag="Dhaf_2975" /db_xref="GeneID:7259984" CDS 3197793..3198260 /locus_tag="Dhaf_2975" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459434.1" /db_xref="GI:219668999" /db_xref="GeneID:7259984" /translation="MTICREFPGSASFYAESFFSRILLYSGRSISCADKTNAKSPPLR RVPGQIAPAQWPVGNVLFPTRLRCVLFAKFCFRSLKFTLFRKAKSLGCFSGLSERGFV GLGKHGFEEDLSRPQKCLAKKPASSSFMYKSRELRRRNLPVEGFRIHARRCRI" gene complement(3198498..3198752) /locus_tag="Dhaf_2976" /db_xref="GeneID:7259985" CDS complement(3198498..3198752) /locus_tag="Dhaf_2976" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459435.1" /db_xref="GI:219669000" /db_xref="GeneID:7259985" /translation="MIIGTFLFYFILFLFVFSSPEKLKQRDKRWTKILVLPAVFALIL AFLTVIKVFFIYKIILIIVLGLTTLLTYWQYGERIKHWLG" gene 3198873..3199097 /locus_tag="Dhaf_2977" /db_xref="GeneID:7259986" CDS 3198873..3199097 /locus_tag="Dhaf_2977" /inference="protein motif:PFAM:PF00269" /note="PFAM: small acid-soluble spore protein alpha/beta type; KEGG: sth:STH1720 small acid-soluble spore protein" /codon_start=1 /transl_table=11 /product="small acid-soluble spore protein alpha/beta type" /protein_id="YP_002459436.1" /db_xref="GI:219669001" /db_xref="InterPro:IPR001448" /db_xref="GeneID:7259986" /translation="MSRRNRSAGILPKSVLDEFKMEVASELGLTEQIQTKGWANMTSR DCGHVGGRIGGSMVKAMIRRAEESLKNDTL" gene complement(3199145..3199900) /gene="surE" /locus_tag="Dhaf_2978" /db_xref="GeneID:7259987" CDS complement(3199145..3199900) /gene="surE" /locus_tag="Dhaf_2978" /EC_number="3.1.3.5" /inference="protein motif:TFAM:TIGR00087" /note="catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate" /codon_start=1 /transl_table=11 /product="stationary phase survival protein SurE" /protein_id="YP_002459437.1" /db_xref="GI:219669002" /db_xref="InterPro:IPR002828" /db_xref="GeneID:7259987" /translation="MHILLTNDDGYFAPGLQTLYTTLAEAGYDVFIVAPDSQKSATGH SITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPKPDLVISGINNGPNLGT DVFYSGTVSAAMEGVLLGVPAIAVSLASFSAVDYKPAAQFVALSLPKLRLGPGLININ IPPLPEKEWKGVRVTKLGKAVYENVFEHRQAPYGRDYYWQAGTVSPEVDQETDLYAVQ EGYVSITPMHSDLTDYIKLKELRQSLSLENPNK" gene complement(3199913..3200086) /locus_tag="Dhaf_2979" /db_xref="GeneID:7259988" CDS complement(3199913..3200086) /locus_tag="Dhaf_2979" /inference="similar to AA sequence:KEGG:Cthe_0705" /note="KEGG: cth:Cthe_0705 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459438.1" /db_xref="GI:219669003" /db_xref="GeneID:7259988" /translation="MDQKTGKIELIGTQKLKINPELYKVVDFLNKNLKEHNLMFGLSK KENTMTMAIYEVE" gene complement(3200131..3200688) /locus_tag="Dhaf_2980" /db_xref="GeneID:7259989" CDS complement(3200131..3200688) /locus_tag="Dhaf_2980" /EC_number="3.5.4.16" /inference="protein motif:PRIAM:3.5.4.16" /note="PFAM: GTP cyclohydrolase I; KEGG: chy:CHY_0955 GTP cyclohydrolase I" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="YP_002459439.1" /db_xref="GI:219669004" /db_xref="InterPro:IPR001474" /db_xref="GeneID:7259989" /translation="MDLEKIEEAVTMILEAIGEDPRREGLLDTPKRVARMYQEVFAGL HEDPSQHLKVQFSEDHEEMIIVKDIPVYSMCEHHLVPFYGKAHVAYIPRKGKVTGLSK IARVVEGYAKRPQLQERLTGQIADSVMSMLNARGVLVVIEAEHMCMTMRGVKKPGSMT LTSAVRGIFKTNEITRSEGFALIKQ" gene complement(3200882..3202033) /locus_tag="Dhaf_2981" /db_xref="GeneID:7259990" CDS complement(3200882..3202033) /locus_tag="Dhaf_2981" /inference="protein motif:PFAM:PF07719" /note="PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mta:Moth_1146 hypothetical protein" /codon_start=1 /transl_table=11 /product="Tetratricopeptide TPR_2 repeat protein" /protein_id="YP_002459440.1" /db_xref="GI:219669005" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="GeneID:7259990" /translation="MFPLSTAKKATSDYSWLSRLKNSTWIFTNKDSDSLEHCLIRLQQ DSDKPLVETVKQAIDFQAYQEARDYLERIWGRYPGKEGEIQYLMARCYFGQGLIQEAL ICLDKALIHGPESTEYLELQADCLMEKEDWRGAVDALNKAIWANPKKVENIYRLGTIY AYHNEPHEALRCFQGCCELKPHNSLYWEMKGEIHLQLEQMSQAIISFEKALRYEYNPD LKARLAYCYTQINEHQKAIRLYRQVLKHDPAHYDSLCNLAAIYQNKGESMEALKLQER AYGLCQNDPVLLNNMAYTLVHLGRTRKATEYYQEALKLAQANPVILYNLAVCHTQKGN WDQGIEILYRLLNIDPDHSEGWALLGNIYDHLTDHESAVDCYNKALQLA" gene complement(3202200..3202664) /locus_tag="Dhaf_2982" /db_xref="GeneID:7259991" CDS complement(3202200..3202664) /locus_tag="Dhaf_2982" /inference="protein motif:PFAM:PF01475" /note="PFAM: ferric-uptake regulator; KEGG: mta:Moth_1147 ferric uptake regulator family protein" /codon_start=1 /transl_table=11 /product="ferric uptake regulator, Fur family" /protein_id="YP_002459441.1" /db_xref="GI:219669006" /db_xref="InterPro:IPR002481" /db_xref="GeneID:7259991" /translation="MAAKQEEWKDEYQKICELLRHHSYKLTPQRQTILKAFLENEDQH LSAEDTFMMVKHNYPDIGLATVYRTLDLLAELGILQKNDFGDGRSRYEFNRKDEHHHH HLICIKCGNVSEFDGDLLESLEAEIEKRNGYQVVDHDLKFYGYCNKCKSTLD" gene complement(3202819..3204756) /locus_tag="Dhaf_2983" /db_xref="GeneID:7259992" CDS complement(3202819..3204756) /locus_tag="Dhaf_2983" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cbf:CLI_1705 aco operon transcriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459442.1" /db_xref="GI:219669007" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7259992" /translation="MEMNDFVQMIQSGKINSQYFAKVGHERNRFLEGKEVDTTVVPRE FIDSWQRCRAYGLAPYTLDYRDVDSAQKKELFQTMVRKYEFFLKNVFNIFDLNGYIFK LQTKEGISQFLGKSTLTFMDCSEEKGGTTSSCVCLHEDKPIIIFQPFYYRQAYIKHFF GELHGASAPIHNEQNKVIGALSLLTHKPEFSIQAYHLISQIAKLHDNLYLPIMLGYEN QIGQIINCLPQGVALISEKNIIKFYNEKIADLLEIDGKKNPEHDLKKRLLKISKSRGA DLEQSSYEIKDDFTNQTLKLVQLVEKSESGKQLGKVERNNDLFTFYQIKGSSPSIQKA KDTAEKIADTLVPVMIYGESGTGKEMFAQAIHSASNRAGSPFVAINCGAIPGELVESE LFGYEGGSFTGALKDGKIGKIEAASGGTLFLDEIESMPLKDQIKLLRVLSAGKVQKVG STTEISVDIRLISATKTDLLMQADEGLFREDLFYRISTFVINLPALRERKEDILLLAE EFSRRLQKKYDKSSVSMDQGFINALTAYKWRGNVRELEHAMEHAFIMLGRGAALLPEH LSVKIQEAYQSRITEEVIDETLEEENEHKFGLLALAEQKMIERVLDSVNGNISAAAER LGINRRTIHRKLQRKESSTTF" gene 3205150..3206973 /locus_tag="Dhaf_2984" /db_xref="GeneID:7259993" CDS 3205150..3206973 /locus_tag="Dhaf_2984" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: gur:Gura_0801 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002459443.1" /db_xref="GI:219669008" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7259993" /translation="MTQKDKKGISRRDFLRNTGILAGSAVVGSTLLAGCSTPTNTANT PAPSTSEPQWDYEADVVVIGAGGAGLPAAVKAQADGASVIVVEASFDIGGHCAVSGGN LHSGAGTSVQKKHGIDDSPDQYYMDHTTDLTQVSRYNDRDVVRATANSMPEAFEFILA NGVLVLDTPPTKGKSYLEGGTSPESVPRDLVTDVETMGWVNYLSNTGPKDGPLRRGIG VVRPLEKTLREKGGQFLMSYHMDKIIREGELTGRAIGVECSYNPTTLPGESTPLKNAY PNGNIETTKANVRIKAKKGIVIATGGHTSNVNFRTMFDPRLTIEYDGVAGDPFSLQDA SGEIAAMAIGAALGTLANQSREVGSAITQPAFLACQYGYRNSAAATRPTSVIFPLIRA TGIEYRTFEDAILVNALGKRFWNEEDATANSFDYFAAALGSVIIDGSSPTDARRIGGP IWAIFDSEAVARRKLTVEPPYVDIGDGRFFVSDTIEELAGKIVNKYYEDIKMDPKVLA DTVARYNGFVDAKKDDDYGKKALEHKIAAGPFYAAWATPCLHDTLTGLRVNGDQQVID LWGQPIPGLFCGGEASSGLSVHGLGRVITQGYIAGKSAAKG" sig_peptide 3205150..3205275 /locus_tag="Dhaf_2984" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.825 at residue 42" gene complement(3207378..3207620) /locus_tag="Dhaf_2985" /db_xref="GeneID:7259994" CDS complement(3207378..3207620) /locus_tag="Dhaf_2985" /inference="similar to AA sequence:KEGG:CHY_0019" /note="KEGG: chy:CHY_0019 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459444.1" /db_xref="GI:219669009" /db_xref="GeneID:7259994" /translation="MMYKKIAVENGLTNVVQELHTAGFHTMPLEEEPLRNISAVVVKG DGTDILAEEAQFHVPVVHASGRSAEEIVEILRDRLS" gene complement(3207683..3210010) /locus_tag="Dhaf_2986" /db_xref="GeneID:7259995" CDS complement(3207683..3210010) /locus_tag="Dhaf_2986" /inference="protein motif:PFAM:PF04389" /note="PFAM: peptidase M20; peptidase M28; KEGG: nth:Nther_2112 peptidase M28" /codon_start=1 /transl_table=11 /product="peptidase M28" /protein_id="YP_002459445.1" /db_xref="GI:219669010" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR007484" /db_xref="GeneID:7259995" /translation="MRKNKHGFLLVVIILFVFCSLNLPQPLTPMAYNSAPASGKVSKD FSADKAYEHILHLSEKIGPRPAGSPNETKAAQYLYYMLEQYGWKVREQPFSKIVGNAN PLKPEHKIQVINSQNIIAELPGASPETILLGAHYDSADVSTPGAIDNASGVGVLLEIA RILGQEKHQKSYQIVFFGAEENGLVGSQYFTAQSDLSAIQWMLNLDMVGTPLEIDIAG KTSAPPELVDKVVTLARQEQIPFHISRDFAVMTREGSQGGASDFSPFLDQSIPALGLG IAGRAEGYYHRPEDRIERVTLQSLDTVGKFIPKLIESVEVTGSGQKTWDSYYLPFQLG SFVVIIPTLGLRILFILTIFFTVFSVSRSFRDQEPFIQGNLKEYVLIGVGIPGAAFLA SFLSGAGEALWQLLKGRVYLWQAYPGVFLTLRVILVLCALLIFLKLLRSLPQPKGGKL YWLIGVLTLTLLTIILGLYRIDLAFPFLFWLLCFNLFLYYPSIILLFIGPYFIYKTHW ELLNSQQWPSFYETIHLYPVLFIVLYGLLFIPVLLGALYILEKGKRPWEQMLKRLLIP ALLVGVGCVLGTGLIPNYSRANPQPITVQKVWTESERVILRVSSTDTLPKSLLKELDS QETKIGEDKKVLELPIPSEKAPLQANVSVTDTGERLLNFKMAMKYGRDPYLVRIKLES KKPFKIQEMVDFVPIAKLPKKIALEGKERDGSYALLLERTPPHQGTIQWKIAAEGIVK CSIEVVFADQTPRYSINLPHISPDYKEVYQDVFEF" sig_peptide complement(3207683..3207751) /locus_tag="Dhaf_2986" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.702 at residue 23" gene 3210168..3211217 /locus_tag="Dhaf_2987" /db_xref="GeneID:7259996" CDS 3210168..3211217 /locus_tag="Dhaf_2987" /inference="protein motif:COG:COG1502" /note="KEGG: fph:Fphi_1736 cardiolipin synthase" /codon_start=1 /transl_table=11 /product="Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein" /protein_id="YP_002459446.1" /db_xref="GI:219669011" /db_xref="GeneID:7259996" /translation="MRKRFLPLILILCLFLTGCSLDIKSLFVKEEEVPLSNLSAEALY FDGKAAREKTKELITSAQKSIYVEQKIFSDPELKALIIQKAASGIEIRILLDQFETPN KTTLNEFKSNNISVQYYPAQKGQTNEAKFLIVDLREAMVYSFPWTEKGFNSHNLAVHL SERSAWKLASTVFNRDWIFTTTLSLDIPKTTELTEDNISVLANTNIKQKLLDQIQKST TNIWIIVSHVTDSDILQALVDAAAKGVDIKLIVDSGIMPKSYQGDIESLQAAGVQIRY YDSSAHPPLEINVGIFDRQTFIFSSSGWGYKAFVMNHEVAILVPSPAASQELIVKFDQ DWLNSSPTPPGQEPG" sig_peptide 3210168..3210233 /locus_tag="Dhaf_2987" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.924) with cleavage site probability 0.380 at residue 22" gene 3211428..3211982 /locus_tag="Dhaf_2988" /db_xref="GeneID:7259997" CDS 3211428..3211982 /locus_tag="Dhaf_2988" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459447.1" /db_xref="GI:219669012" /db_xref="GeneID:7259997" /translation="MMKKWTSLVAAAAIVVLLAGCSANANPPQAPQDSVDQQTPQPVE TADNPVVNESIPFTSLEELKEMYAVTKNNSYQGVAGANTVSINPELQKFVDAPVHITQ EGFDSLSLEDRKLYAKILLRYMDVNAKELGLLTDSDGIKFELTEIPGYWLVMPETLAG SAAYYWPKDNHWGPEPFSPDTPKR" sig_peptide 3211428..3211505 /locus_tag="Dhaf_2988" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 26" gene complement(3212110..3212763) /locus_tag="Dhaf_2989" /db_xref="GeneID:7259998" CDS complement(3212110..3212763) /locus_tag="Dhaf_2989" /inference="protein motif:PFAM:PF00300" /note="PFAM: Phosphoglycerate mutase; KEGG: gtn:GTNG_1326 phosphoglycerate mutase" /codon_start=1 /transl_table=11 /product="Phosphoglycerate mutase" /protein_id="YP_002459448.1" /db_xref="GI:219669013" /db_xref="InterPro:IPR013078" /db_xref="GeneID:7259998" /translation="MVKLIFTRHGETLWNIEGRVQGAMDSPLTEKGILQARKVGQRLR KEGITRIYSSDLPRARATADEIRKAVGIEEILLDPALRELSFGEWEGKNWWDLRQLHP ELFSLWDTGPHQVQIPGAESMWEVSERAWQFVQELPRLHDGETLCVVTHGMTLQLIVK KALGIPVEQWNDVPWQHNTAVNIFEFYEDGRIYPILLADHTHLDDDIKPTSGFTSKK" gene complement(3212867..3213045) /locus_tag="Dhaf_R0068" /db_xref="GeneID:7259999" ncRNA complement(3212867..3213045) /locus_tag="Dhaf_R0068" /ncRNA_class="other" /product="6S RNA" /note="6S / SsrS RNA as predicted by Rfam (RF00013), score 82.80" /db_xref="GeneID:7259999" gene complement(3213097..3213579) /locus_tag="Dhaf_2990" /db_xref="GeneID:7260000" CDS complement(3213097..3213579) /locus_tag="Dhaf_2990" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459449.1" /db_xref="GI:219669014" /db_xref="GeneID:7260000" /translation="MALRDKTNQRFKEFFEKQSKRNDGKEFEISFAEIQRETGAASST MKRAIEALTEEGWLGVKPGRNTRYGLFKLLQGEAETAEALPGAPEPDPPMYESTSDFS PAPASDSGNGSSALASESRVQELEHLIDGLRRRLRAQEMTIALLQDRMAEIEDKLYKR" gene 3213761..3214129 /locus_tag="Dhaf_2991" /db_xref="GeneID:7260001" CDS 3213761..3214129 /locus_tag="Dhaf_2991" /inference="similar to AA sequence:KEGG:Daud_1320" /note="KEGG: dau:Daud_1320 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459450.1" /db_xref="GI:219669015" /db_xref="GeneID:7260001" /translation="MPKSFHFGLVFKGILLAAGIALLISLILGLVLTLTPLQESSLVY NIILGMSVFLAAAITTYRAGMKGLFYGISIGAGFLLLLLLLFTVLSPDTPSWLNFGEK SIIILAAGAAGGIIGVVARG" sig_peptide 3213761..3213862 /locus_tag="Dhaf_2991" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.925) with cleavage site probability 0.339 at residue 34" gene 3214244..3214702 /locus_tag="Dhaf_2992" /db_xref="GeneID:7260002" CDS 3214244..3214702 /locus_tag="Dhaf_2992" /inference="protein motif:PFAM:PF02663" /note="PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dau:Daud_1104 formylmethanofuran dehydrogenase, subunit E region" /codon_start=1 /transl_table=11 /product="formylmethanofuran dehydrogenase subunit E region" /protein_id="YP_002459451.1" /db_xref="GI:219669016" /db_xref="InterPro:IPR003814" /db_xref="GeneID:7260002" /translation="MCVEKTPWELVIDFHGHTCPDIALGYRIAQLAQREMGIRPAPDS ECLVKAYTQSCALDAIQVLNKATIGRHALIIEETHRYMYQFHFTGTQDIHQFTVSPAV LDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCHYDKIPGQLSKIV" gene complement(3214797..3214997) /locus_tag="Dhaf_2993" /db_xref="GeneID:7260003" CDS complement(3214797..3214997) /locus_tag="Dhaf_2993" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459452.1" /db_xref="GI:219669017" /db_xref="GeneID:7260003" /translation="MLFQWIMGIVALAALIIFLLSDKWTSKSRHSSYYEQVKKPQGKE PRLANLPDASKHDKFYSKLNAR" gene complement(3215220..3217334) /locus_tag="Dhaf_2994" /db_xref="GeneID:7260004" CDS complement(3215220..3217334) /locus_tag="Dhaf_2994" /inference="similar to AA sequence:KEGG:HM1_2469" /note="KEGG: hmo:HM1_2469 cell division protein" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="YP_002459453.1" /db_xref="GI:219669018" /db_xref="GeneID:7260004" /translation="MEQVFALDIGTRLVMGLIMEKAPGGYHIIARAQTEHRQRAMYDG QIHDIEEVAQAVQRVKEELEEKIKSKLHYVSVAAAGRALKTAVATAQKSELIPMIWER EDIFALEMEAVQKALREVQAEDEIIPYHCVGYSTIESLLEGQSLSSLSGQRGKEAQVK VIATFLPRTVVDGLTRVISKVGLEMRELTLEPIAAGRAAIPPDMRRMNLALVDVGAGT SDIALTKSGSFFAYGMVPMAGDEITERICQHFLVDFQTGEKIKRSLNTKTKVTFTDFL GMKTTVNKEEVLEQIQPVVLELAQKLADEILRLNQGNPHAIILIGGGSQTPLLAEALS DLLELPRNRVGIQVRERIQGVSGEKSLKGPDAITPIGIGISTIEGEGLQYFSVHVNDL TVQIFELQLATVSDALLAAGITPRLLVGRPGSALTVELNGDIKVSKGQFSKPAQFFLN GEEVKLDHELKPGDKIQFIPAQDGENAQATFADLVPAIPEKKIKVNGESVVFTAQIFC NGRPVTRDGDVPDGAKITVFQNQTLKDLLHFLNDKQYSLSEIRYKINGEEKVIPIHKE FYINQQKVDLERMLKDGDDLVILVKEVYIKDLQLKPTPMVFYVNGQEVEYPPQIFRIL SRGRVLSDQEKVVDGMELSVEGYDTMPLLSELLPYVNIPQDVPANARLSLKRNNQEAE FTTPLIPGDRIEIHWEQVASAL" gene complement(3217407..3218378) /locus_tag="Dhaf_2995" /db_xref="GeneID:7260005" CDS complement(3217407..3218378) /locus_tag="Dhaf_2995" /EC_number="2.7.1.11" /inference="protein motif:TFAM:TIGR02482" /note="KEGG: hmo:HM1_0078 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="YP_002459454.1" /db_xref="GI:219669019" /db_xref="InterPro:IPR000023" /db_xref="InterPro:IPR012828" /db_xref="GeneID:7260005" /translation="MTNTVRKIAVLTSGGDAPGMNAAIRAVVRKGIYHGLEVFGIRKG YEGLIHGEFITMHLGAVADIIHRGGTMLMTARSQEMLTPEGQKNAAAQLRYRGIDALI VIGGDGSFRGAQTLSAQGIAIVGIPGTIDNDITGTDLTIGFDTAVNNVVQAVSKIRDT ATSHDRTFLVEVMGRDCGNIALQSGVACGAESILVPEIEPDLDDIVAKLERGHQRGKH HSIIMVAEGAMSAWNLGEELRQRTGFETRVTILGHIQRGGNPSALDVVLASQMGGKAV EILCAGETDRMTACVNQEIQSLPLEVAYGERKPFNKVLYDLANQLAI" gene complement(3218391..3219380) /locus_tag="Dhaf_2996" /db_xref="GeneID:7260006" CDS complement(3218391..3219380) /locus_tag="Dhaf_2996" /inference="protein motif:PFAM:PF08299" /note="PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: dge:Dgeo_0001 chromosomal replication initiator protein DnaA" /codon_start=1 /transl_table=11 /product="Chromosomal replication initiator DnaA domain protein" /protein_id="YP_002459455.1" /db_xref="GI:219669020" /db_xref="InterPro:IPR001957" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013159" /db_xref="InterPro:IPR013317" /db_xref="GeneID:7260006" /translation="MWLSSEFNRMAEKTFKAYEPDDAFFSTLLYGPEGVGKSTLLVKC CQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTPGVLIMDHIEVLKGKTRS IEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGGLVVPILQPTPEDMLN YLRQMAYGKFLIVEDLVLELMAEEAANFPEAQSLMNGFIQFANRTDSALDHDALLLYL QERRYQEGLRPSPQNIIQKVAELTGVAAAAIYSTTRTPEVRQARQLAIYGIRSLSRLS YPEIGASLNKSHSSIMKSYQQFQEAVQKNPELREMLESLVKYFNSPDDEKTER" gene complement(3219496..3220005) /locus_tag="Dhaf_2997" /db_xref="GeneID:7260007" CDS complement(3219496..3220005) /locus_tag="Dhaf_2997" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="Peptidylprolyl isomerase" /protein_id="YP_002459456.1" /db_xref="GI:219669021" /db_xref="InterPro:IPR002130" /db_xref="GeneID:7260007" /translation="MSEHDLNDKKPVVTIEMESGSTIKIELYPDVAPETVKNFVSLVE KGFYDGIIFHRVIPGFMIQGGDPQGTGMGGCGYSINGEFTANGFPNNLKHERGVISMA RTANPNSAGSQFFLMHADSPHLDGQYASFGRIIEGIEEVDRIANVKRDYRDKPVEDQQ MKKVTVEFI" gene 3220161..3221147 /locus_tag="Dhaf_2998" /db_xref="GeneID:7260008" CDS 3220161..3221147 /locus_tag="Dhaf_2998" /inference="protein motif:PFAM:PF01297" /note="PFAM: periplasmic solute binding protein; KEGG: csa:Csal_0220 periplasmic solute binding protein" /codon_start=1 /transl_table=11 /product="periplasmic solute binding protein" /protein_id="YP_002459457.1" /db_xref="GI:219669022" /db_xref="InterPro:IPR006127" /db_xref="InterPro:IPR006128" /db_xref="InterPro:IPR006129" /db_xref="GeneID:7260008" /translation="MRSFVKHSHWLKLFLIASLVFLATGCSAEKPVSTMNQKVVITSI SPLADLIKNVGGESIQVISLVPTGSDPHTYEPTPEAVRQVTGAKLFFANGVGQETYLE KLITNSQNKDLRTVILADGLEILGIDDHDSDHEEESAHDEAEVHREGDGHDHSQGNPH LWLDVKNAQHYVKSIRDALIETYPQDQEIFKTNAENYLRELEALDQWIQEQILTIPQE NRDLIVYHDAWVYYTERYGLTVLRPVVHGDESEPSAKDYAQLIELIKEHQVKAIFGEV GFNTKLVLQLAQETGIKVVEDLYNDTLGVTPETDSYIGIMKHNTTAIVTALK" sig_peptide 3220161..3220247 /locus_tag="Dhaf_2998" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.954 at residue 29" gene 3221208..3221963 /locus_tag="Dhaf_2999" /db_xref="GeneID:7260009" CDS 3221208..3221963 /locus_tag="Dhaf_2999" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hau:Haur_3045 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459458.1" /db_xref="GI:219669023" /db_xref="InterPro:IPR001220" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260009" /translation="MLAVEFDSFSYSLPQRDILWDINLRIASGSCVGIIGPNGSGKST LIKSIVGLNQATKGSVKVFGQPPTREWRRKMQLGYVPQLKTMDKDFPISVYEVVLLGR TGRLGWFNRPRAEDHHLVEQALSKVNMLNLKDRPIGQLSGGQQQRVLIARALATESRL LLLDEPATGLDIPSQQSIFGLIEDLHGDGITILTTTHDLAALEYHHFDLIICLNQTVI AFGPPQEVLVPHILERTFMGNQLGGNIPYASTY" gene 3221947..3222804 /locus_tag="Dhaf_3000" /db_xref="GeneID:7260010" CDS 3221947..3222804 /locus_tag="Dhaf_3000" /inference="protein motif:PFAM:PF00950" /note="PFAM: ABC-3 protein; KEGG: rxy:Rxyl_1143 ABC-3" /codon_start=1 /transl_table=11 /product="ABC-3 protein" /protein_id="YP_002459459.1" /db_xref="GI:219669024" /db_xref="InterPro:IPR001626" /db_xref="GeneID:7260010" /translation="MHLLIEPLQYAFMQRALIGTIAVAVLTAVVGTFVILRRLAFIGE GLAHGSLAGLAIGYLLGWNLYIAGNIYTIGLALFIGALHEKAKVSLDTAIGILFSTSM ALGVALISSLKFYSSNLTGYLFGSVLSIGSFDLMIIVGSTCVILAILAVFYKEFVYYA FDPEMAEVTGLPRARLHYAMLAMIAVTVVVASQTVGIILVTALLTIPAASAFQWTHSL KKLVLLSVFFGLISAILGLYLSYYLNVASGASIALTAAVIFLLSFLCSPKRVSLGRSF GRVKTSEKG" gene 3222811..3223248 /locus_tag="Dhaf_3001" /db_xref="GeneID:7260011" CDS 3222811..3223248 /locus_tag="Dhaf_3001" /inference="protein motif:PFAM:PF01475" /note="PFAM: ferric-uptake regulator; KEGG: gtn:GTNG_2406 transcriptional regulator Fur family" /codon_start=1 /transl_table=11 /product="ferric uptake regulator, Fur family" /protein_id="YP_002459460.1" /db_xref="GI:219669025" /db_xref="InterPro:IPR002481" /db_xref="GeneID:7260011" /translation="MDYNEIIQLIQEKGYRLTDPRKKVIRILTSHSEFLGAYDIHNLL QQENVPIGVASIYRVLSLLKSLGLLRSEEFSAGGEKYRLESLASHHHHSHQLICSQCG RTEEWIGECPISNIAGKLEQDSGYQIEEHWLRFFGVCPFCRKE" gene complement(3223256..3223873) /locus_tag="Dhaf_3002" /db_xref="GeneID:7260012" CDS complement(3223256..3223873) /locus_tag="Dhaf_3002" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: mta:Moth_0719 hypothetical protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002459461.1" /db_xref="GI:219669026" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7260012" /translation="MLEQLLTTLGEFVVELISSLGYFGVFLAMAIESACIPLPSEIIL PFTGYMVYIGHFDFWTATLAATLGNLFGGLVAYYVGVRGGRPFIQRYGHYFFIKEKEL QWTERLFSRHGEITVLVGRLLPVIRTFISLPAGIAKMSAVKMAIYTVLGALPWCMFLI IVGEKLGANWNSLKPLFHRLDLVIGVLILAGIGYFFFKRKGRKRR" gene 3223917..3224360 /locus_tag="Dhaf_3003" /db_xref="GeneID:7260013" CDS 3223917..3224360 /locus_tag="Dhaf_3003" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459462.1" /db_xref="GI:219669027" /db_xref="GeneID:7260013" /translation="MPLKLFCAKVLGNFSRILLYSGRSISCADKTTAQSPPLRRVPGQ IAPAQWPVGNVLFPTRLRCRLFAKFCFRSLKFALFRKAKSLGCFAGVCMQALRDESRP KLFFPSCRRRWGRQGRRPKGGPQAVALRTKADGFSGGAVRSTRLS" gene complement(3224600..3225979) /locus_tag="Dhaf_3004" /db_xref="GeneID:7260014" CDS complement(3224600..3225979) /locus_tag="Dhaf_3004" /inference="protein motif:PFAM:PF04293" /note="PFAM: SpoVR family protein; KEGG: chy:CHY_1202 stage V sporulation protein R" /codon_start=1 /transl_table=11 /product="SpoVR family protein" /protein_id="YP_002459463.1" /db_xref="GI:219669028" /db_xref="InterPro:IPR007390" /db_xref="GeneID:7260014" /translation="MDYEVTELSYYAQEIAKVARGLGLDFYPVHFEVCPAEAIYSFGA YGMPVRFTHWSFGKAFYRMKMQYDLNLTRIYELVINSNPSYAFLLEGNRLIQNKLVIG HVYAHVDFFKHNRYFRRTPQDMVLRMEAHARRMRDYELEHGRDKVEQTLDAVLAIQEH VDFRAHLGPQKSSAEDSNKKGGAQKKISVHLTEYADLWDRETDDEAEERLPEEDLLLY LMTHSSSLEDWQRDILSMIREESLYFYPQIETKIINEGWATFWHSRIMRELDLTDAEA VDFAVMHSQVVQPAKLQLNPYYLGVKIWDHLAEHYDWETLFEIREMENDISFVRNYLN QELVEELNLFNYRKVGAHWQVMDTAWEKVRDNLVKQLVHGGHPRILVMDGDYEGKGGL YLVHGHEGLDLDIVYLERTLQLLQTLWGKGVYLETVVDGKKILFECTSSGISRKSMAK VQDRQKEEQ" gene complement(3226026..3227156) /locus_tag="Dhaf_3005" /db_xref="GeneID:7260015" CDS complement(3226026..3227156) /locus_tag="Dhaf_3005" /inference="protein motif:TFAM:TIGR02877" /note="TIGRFAM: sporulation protein YhbH; PFAM: protein of unknown function DUF444; KEGG: mta:Moth_0511 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459464.1" /db_xref="GI:219669029" /db_xref="InterPro:IPR006698" /db_xref="InterPro:IPR014230" /db_xref="GeneID:7260015" /translation="MSDDIIVSREDWGLHRKGYLDQNRHKEKVQEAIKKQLGDLIVDE SIILSDGKKATKIPMRSLEEFRFRFDYNKKKHTGQGSKRMQDGDILARESQRKQGAGK GPGAGDEPGVDIYEAEVTYEDLATLLFEELQLPNLDDKKRPLIAHDKPEFKDIRKKGL MANIDKKRTLIESIKRQALAGKDQDLKILPEDLRFKTWETHPNYETNAVILAMMDTSG SMGQFEKYISRTFFFWMVRFLREKYENVEMRFLAHHTEAKEVTEEEFFTRGESGGTRC SSVYQLALEIIRRDYPPAHYNIYPVHFTDGDNIGSDNTRSLNLMQKLVDVSQVVGYGE ILRTHYSSTLMSSLKRITDPKLRFVTIRDRQEVYEALKTVFS" gene complement(3227169..3229070) /locus_tag="Dhaf_3006" /db_xref="GeneID:7260016" CDS complement(3227169..3229070) /locus_tag="Dhaf_3006" /inference="protein motif:PFAM:PF08298" /note="PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pth:PTH_1645 putative Ser protein kinase" /codon_start=1 /transl_table=11 /product="putative serine protein kinase, PrkA" /protein_id="YP_002459465.1" /db_xref="GI:219669030" /db_xref="InterPro:IPR010650" /db_xref="InterPro:IPR013153" /db_xref="GeneID:7260016" /translation="MEVIQWLKNYRDREAALAWNGTFTEYLLKIVENPKLAMHAHARI YEMIRKAGIKEENDHKNYAFFNKELFGMEKTLERLVEEYFHSAAKRLDVRKRILLLMG PVSGGKSTIVTLLKKGLEDYTRTEEGAVYAIDGCPMHEDPLHLLPQVLREEFEQQYGI RIEGNLCPVCRLRVEEEFQGRVEDVPIKRIIFSEEQRVGIGTFTPSDPKSQDIADLTG SIDFSTITEYGSESDPRAYRFDGELNKANRGLMEFQEMLKSDEKFLWNLLSLSQEGNF KAGRFALISADELIIAHTNENEYKSFVANKKNEALQSRIIVIPVPYNLKISSEVKIYE KLIQQSDLKGIHLAPHSLWTASVFSIISRLKPSKKQGMDLVKKMRLYDGEDVEGFNQK DIKDIMTEGEEQGEGMSGVDPRYVINRISTALIRDHKSCINALDILRALKDGLSQHTS ITKEERENLVNLIAVARKEYDEVAKKEVQKAFVYAYEESAKSLLNNYLDNVEAYCNSS KLYDPITGEELEPDEQLMRSIEEQIGVSENAKKAFREEILIRISIYARKNKAFQYTSH ERLREAIEKKLFADLKDVIKVTTSVSHPDQEQLRRINEVTDRLIQLHGYCPICANEIV KYVGSLLNR" gene complement(3229278..3229490) /locus_tag="Dhaf_3007" /db_xref="GeneID:7260017" CDS complement(3229278..3229490) /locus_tag="Dhaf_3007" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hmo:HM1_1895 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459466.1" /db_xref="GI:219669031" /db_xref="GeneID:7260017" /translation="MYAAKYESIKTGIPDRLPKFKRGDRVLTYNSKMGTVVRLEKDEL GEYFVVQLDVFSGEYAYDAKDLTRLQ" gene complement(3229638..3230171) /locus_tag="Dhaf_3008" /db_xref="GeneID:7260018" CDS complement(3229638..3230171) /locus_tag="Dhaf_3008" /inference="protein motif:TFAM:TIGR00708" /note="TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: hmo:HM1_1898 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP" /codon_start=1 /transl_table=11 /product="cob(I)alamin adenosyltransferase" /protein_id="YP_002459467.1" /db_xref="GI:219669032" /db_xref="InterPro:IPR003724" /db_xref="GeneID:7260018" /translation="MANLEKGLIQIYTGNNKGKTTAALGLTLRAVGHGYHVFILQFMK GRQDYGELQGLKRLEPECRLEQYGSPGWVFKGQAEENDRREARAGLERAREIMLSGEW DIVILDEIINAIWFELIPEEEVIELLAQKPEQVEIIMTGRNASPQLIEKAHLVTEMVD IKHPYELGIQARKGIEY" gene complement(3230176..3230703) /locus_tag="Dhaf_3009" /db_xref="GeneID:7260019" CDS complement(3230176..3230703) /locus_tag="Dhaf_3009" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459468.1" /db_xref="GI:219669033" /db_xref="GeneID:7260019" /translation="MKLEDMLLLESLEDIHQVIEQSLKKISKVRSVHVHHFEEWAEEV RNHRRIFEEISIPARLIIEHLIHCRHKSGQVSLETGQMSLAFSSIGSIKVEQFGIIKI KCGELETLWRDSNTSYYFYPDKVELRAADEKSAMKILFTYAFTQQIVEKFPELIHCPN VAYIHPQLEQWSRQV" gene complement(3230789..3232054) /locus_tag="Dhaf_3010" /db_xref="GeneID:7260020" CDS complement(3230789..3232054) /locus_tag="Dhaf_3010" /inference="protein motif:PFAM:PF00515" /note="PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: NEMVEDRAFT_v1g205876; predicted protein" /codon_start=1 /transl_table=11 /product="TPR repeat-containing protein" /protein_id="YP_002459469.1" /db_xref="GI:219669034" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="GeneID:7260020" /translation="MNDNSLEFWRTLMEKGTAYLGQTDYVKAEDYFKRAVRIAHHLDV PLVKAFSLRLLATVQVKQGKTEIAEKGFREALQICEKVNNYKGMSEALAGLASVAVEK NNFENALHFYRRAIEVYPPESPPLRLAMLYSDLGQAYSALERWQEAQDTYRKAMNLCH KFNYPKGEGELSILIGEVHYRLEDKDQAILCIQHSCKVFAGSKEEVSLINSLQYYAFM MFELQRLEEALTALQRAVVLQMRNNLWEDVSESVYFMAKVLQGLGDLDEAQYYLELSI KCCPDHELSLALRLQSIGRLMVRKEEYGQAKKYFLESAAIFELLGDDLRLGECYEYLA FLLDALGEEEESEYYRKESKRMIAGYHAHSLNAVQRLAEYYERRKQYLDALQCYWQSI EIARDIGYETMDLERAVQRVSRKVRQKKH" gene 3232193..3232444 /locus_tag="Dhaf_3011" /db_xref="GeneID:7260021" CDS 3232193..3232444 /locus_tag="Dhaf_3011" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459470.1" /db_xref="GI:219669035" /db_xref="GeneID:7260021" /translation="MNAYRPAPSSNWVIVLKIILLILALYFSAILLSHVFGWFFSIAF VVIRIAVYFVTSILVLHLFLKLLFGYDLLRFILGTRFSR" gene 3232586..3233377 /locus_tag="Dhaf_3012" /db_xref="GeneID:7260022" CDS 3232586..3233377 /locus_tag="Dhaf_3012" /inference="protein motif:PFAM:PF01522" /note="PFAM: polysaccharide deacetylase; KEGG: drm:Dred_1605 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_002459471.1" /db_xref="GI:219669036" /db_xref="InterPro:IPR002509" /db_xref="GeneID:7260022" /translation="MKFIVFKRPALRNAMLWAILLFVVLAYRENVIAVFSSKLKPIYS AEVTTSEIGLTFDISWGEKTPEPILDILQEKGVKATFFLSSPWAAKHEDLVKRMVADG HEIASHGNRHIDLNTLSPGEIEREIMSAHEVLQQITGQKISLLRPPNGAYDNKLISVS QRLGYQVIQWSVDSLDWKRPGPEAVIHNVLNGLPNGHGAGPGDIILFHASDSAPDTIK ALPVVIDQLRAKNYQLVPVSQLLKSATKTWPPESNLPPLEQTGSS" sig_peptide 3232586..3232666 /locus_tag="Dhaf_3012" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.645) with cleavage site probability 0.510 at residue 27" gene complement(3233403..3234425) /locus_tag="Dhaf_3013" /db_xref="GeneID:7260023" CDS complement(3233403..3234425) /locus_tag="Dhaf_3013" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459472.1" /db_xref="GI:219669037" /db_xref="GeneID:7260023" /translation="MERTLKRKKIPHRNKRKQRVLQILLSGILILLLLLAGLPYFQHV GAYRGAVDRYDFAALTQELAWIEKNAAWLKKLPFIAEGELWLKLNQGEYEAIEPELVH HEDDGHRFWLFQLYLLKDRPDEAEKVIAVLDNPALQKLAQGMLWGKGEEHEKAVNTLL SISEGDLNSEDRVLKNIALSRSYLALGKLEQAQKSWQMAAEISSTHPLVSETEYDLAL FTGQWGKAKELSSQSSPVQATSYGEQVLVKKALLALVIGDREGYENTLKALEAKENGE ACIQYLTGVKAYERGEFAQAAEYLDGAIQMGLPGFIKKDAAQAMAQAKERIEAEGALQ AITGKR" sig_peptide complement(3233403..3233531) /locus_tag="Dhaf_3013" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.532 at residue 43" gene complement(3234410..3235297) /locus_tag="Dhaf_3014" /db_xref="GeneID:7260024" CDS complement(3234410..3235297) /locus_tag="Dhaf_3014" /inference="protein motif:PFAM:PF02588" /note="PFAM: protein of unknown function DUF161; KEGG: dth:DICTH_1300 YitT family protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF161" /protein_id="YP_002459473.1" /db_xref="GI:219669038" /db_xref="InterPro:IPR003740" /db_xref="GeneID:7260024" /translation="MRGGIFLSWREDYLRVTWVHLKRIVAIIIGAVIVAASINSMIIP NKIADGGVTGIAIIVYYLFNLPVSKVVILLNIPLFLVGWKMVGRVFLVYSIIGVAAFS LALEVTMAIPNPTADPLLACIFAGVVSGIGMGIIFRSRGSLGGTDILAVFFSRTTSFS VGQVLMGIDALIFIAAAVFLGPERAMYAMIYMFIATKVIDMVQEGLNPSKSVLVVTGD PHGIAQDIMEKLDRGVTLFQAKGAYSKEDKEVVYCVISRTEMSQIKEIIRTRDPKAFL SISDVPEVVGEGFSTWKGH" gene complement(3235464..3235539) /locus_tag="Dhaf_R0069" /note="tRNA-Arg6" /db_xref="GeneID:7260025" tRNA complement(3235464..3235539) /locus_tag="Dhaf_R0069" /product="tRNA-Arg" /db_xref="GeneID:7260025" gene complement(3235618..3236295) /locus_tag="Dhaf_3015" /db_xref="GeneID:7260026" CDS complement(3235618..3236295) /locus_tag="Dhaf_3015" /inference="protein motif:PFAM:PF02223" /note="PFAM: thymidylate kinase; KEGG: cth:Cthe_2107 thymidylate kinase" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="YP_002459474.1" /db_xref="GI:219669039" /db_xref="InterPro:IPR000062" /db_xref="GeneID:7260026" /translation="MGKLIIIEGGDGSGKATQTRKLWRRLADEGLQVKKVEFPNYSSP SSSLVTMYLGGEFGTDPNGVNPYTASTFYAVDRYASYKTLWGDFYSRGGIILSDRYTT SNMIHQAVKIKDPAGWASYLDWLKDFEYRLMGLPEPDLVIYLNMPPDLSIQFIAGRAD KSSVTSQDIHEKNKGYLKESYDNAQKVRVRENWLTIDCVSEGRLKSIEEIHEEIYAVT QKAIVLK" gene complement(3236395..3238032) /locus_tag="Dhaf_3016" /db_xref="GeneID:7260027" CDS complement(3236395..3238032) /locus_tag="Dhaf_3016" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: cpy:Cphy_2000 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002459475.1" /db_xref="GI:219669040" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7260027" /translation="MKRKSTLILVVTMILALTLTACGNPSAPAQADGDKKPKQLVAQI GPNPETLDPALNSAVDGGNMLLFAFDCLLNVDKDNKIIPGAAEKWETSEDGLTWTFYL REGLKWSDGSPLTAKDFVYSWKRVADPATAAPYGETVLGMVKGFDEAAGGNPDALAVS APDDTTFVVELANPCAYFDKLAAFATLSPVQQATIEANGDAWATKPEAYIGNGPFQIS EWVPSSYILFTKNPNYRDPDSIKLDSIKLLLIEDSNASYAAYKTGEAMMIKDVPTAEI PSLQGKDDFYIEPLLGTYYLDLNNTLPQFSDPRVRMALSLAIDRKYVADTLMQGTYTP ASNFIGTGVADWDGSSFMDNANGGKPYINIDDHEGNLAKAKELLAEAGYPEGKGFPAI TYSTNDSAYHKVVAQYLQQAWKELGLTVNVEIVEWASFTPQRRAGDYQTSRDGWLFDY NDASNMLDLMYSTNGNNNAKYKSAEYDALMDKAAAEVDPEKRSGYLHQAEDHMMADAA VVPVAYYNEFYLQSPKITGSWHSPYGYWYFQYADIVE" sig_peptide complement(3236395..3236490) /locus_tag="Dhaf_3016" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.962 at residue 32" gene complement(3238114..3239094) /locus_tag="Dhaf_3017" /db_xref="GeneID:7260028" CDS complement(3238114..3239094) /locus_tag="Dhaf_3017" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: csc:Csac_1031 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002459476.1" /db_xref="GI:219669041" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260028" /translation="MIDNNKLLEIQHLKQYFPVKSEKLLEKKVVKAVDDVSFSINKGE TLGLVGESGCGKTTTGRTLLRLHEPTGGKIFYAGKDITHVNMLPYRRKMQIVFQDPYA SLNPRMTVGDIVGEAIDIHRLAANAQERRDRIVELLSLVGLNTEHANRYPHEFSGGQR QRVGIARALAVNPEFIVCDEPISALDVSIQAQVVNMFEELQQRMGLTYLFISHNLSVV KHISNRIGVMYLGKLVELADSYELTFHSVHPYTRSLISAIPIADPKVSRSTQRIVLEG DVPSPVNPPSGCRFRTRCVYADQRCAAEEPEWREVSAGHFAACHHLDRVQ" gene complement(3239087..3240094) /locus_tag="Dhaf_3018" /db_xref="GeneID:7260029" CDS complement(3239087..3240094) /locus_tag="Dhaf_3018" /inference="protein motif:TFAM:TIGR01727" /note="KEGG: cpy:Cphy_1998 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_002459477.1" /db_xref="GI:219669042" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260029" /translation="MNEYLVDIRNERLSFFTPAGEVKALNDVSLHVREGEVLGVVGES GSGKSVTSYSLMGLTAHPGRLIGGDLYFNGHHINKMTERELREIRGNEVSIIFQDPMT SLNPVYTIGNQIREVILLHTKKTKKEANERARELLQLVGINEPEKRLKQYPHELSGGM RQRVMIAIALACEPKLLIADEPTTALDVTIQAQIIELMINLKEKMGMSIILITHDLGV VAGMCDRIAVMYAGKVIESGTADEIFYQPSHEYTKGLLQSVPNINDREHKQLVPIEGL PVDMLNPPAGCPFAPRCRSCMKICLSTMPAYTKLSEEHYSACWLLDKAKFEGQSEVQH D" gene complement(3240110..3241153) /locus_tag="Dhaf_3019" /db_xref="GeneID:7260030" CDS complement(3240110..3241153) /locus_tag="Dhaf_3019" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1997 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459478.1" /db_xref="GI:219669043" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7260030" /translation="MTEKNPLSLQLKVEDFLPATDAEKQSLTQMRPGVSFWKDAMRRL RKNKVAMISLTVILVVMFFSFIVPSFYPYKYEQQIKGSEYLKPMTYSTQEQLRIDAGE KVFPHILGTDNLGRDYAVRVMVGSRISLMVGLIASAIILVIGSTYGAVSGFFGGWVDL MMMRIVDIIYTVPDILLIVLISFAIRDPLGILATKPGFGWIQTVGPNLISIFLVFALL YWVGMARIVRSQVLALKQNEYVTAARALGAGTGRIIRKHLLTNCIGTLIVTTTLQIPS SIFTESFLSFLGLGVAVPLPSLGSLASDALNGLNSYPYLLMAPALLISLIILSFNLLG DGLRDAFDPKMKS" gene complement(3241166..3242083) /locus_tag="Dhaf_3020" /db_xref="GeneID:7260031" CDS complement(3241166..3242083) /locus_tag="Dhaf_3020" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1996 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002459479.1" /db_xref="GI:219669044" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7260031" /translation="MIKYVIKRIILAVMTIFVVATITFFLMNMVPGGPFVAEKSISAQ AQAALHEKFGLDKPLIVQYKNYMLSAAQGDFGLSLKQRGRTVSDIIVSKFPVSAKLGG IAVLVALSIGIPLGSIAALNRGKWLDDLIIVIATCGIAFPSFVICTVGMYVFGVYLGV LPTMGLTTPAHYILPVFALSFYPTAYITRLMRSSMLDVIGQDYMRTARAKGLSQMKSL FKHALRNAILPVITYVGPMLAFTLTGSFIVEKIFVIPGLGGQFVSSIVNRDYTVIMGT TIFLATLVITINALIDILYKFIDPRIQLK" sig_peptide complement(3241166..3241276) /locus_tag="Dhaf_3020" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.926) with cleavage site probability 0.514 at residue 37" gene complement(3242511..3243305) /locus_tag="Dhaf_3021" /db_xref="GeneID:7260032" CDS complement(3242511..3243305) /locus_tag="Dhaf_3021" /inference="protein motif:TFAM:TIGR02875" /note="TIGRFAM: sporulation transcription factor Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A; KEGG: hmo:HM1_0304 stage 0 sporulation protein A" /codon_start=1 /transl_table=11 /product="sporulation transcriptional activator Spo0A" /protein_id="YP_002459480.1" /db_xref="GI:219669045" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR012052" /db_xref="InterPro:IPR014879" /db_xref="GeneID:7260032" /translation="MGRKIKIVVADDNRNLCQMLQDFLQSQDDLEVIGIAYNGVEAWD LIQSQEPDLVIIDLVMPSLDGLGVLERINGRTTASRPKVIMLTAFGQESLTHQAMILG VDYFILKPFDLEILGKRIRSLTQSAPSSSTPMTSAVNAVTNAGTSVNLGAEVTNMMHQ IGIPAHVKGYQYIRDAILMVVEDVSLLGAVTKELYPAIAKKYDTAPSRVERGIRHAIE LAWERGHTETLKRIFGYSMNIERQKPTNSEFVALLADKLRVMSKVS" gene complement(3243624..3244124) /locus_tag="Dhaf_3022" /db_xref="GeneID:7260033" CDS complement(3243624..3244124) /locus_tag="Dhaf_3022" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: chy:CHY_0255 putative phosphinothricin N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459481.1" /db_xref="GI:219669046" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260033" /translation="MASQFILRQAQVKDLERINAIYNWAVLNTVATFDLEERSLAAAE VWFGNHQDPYYPVYVVENQGQVTGWGSLSPFHPRAAYKQSGEFSIYIAPEWTGQSMGD ALLKVLCQEAKKLGYHTLLGRITSTNEKSISLAKKHGFWEAGKYHEVGTKFGQCLDVM IMQIIF" gene 3244215..3244400 /locus_tag="Dhaf_3023" /db_xref="GeneID:7260034" CDS 3244215..3244400 /locus_tag="Dhaf_3023" /inference="similar to AA sequence:KEGG:CAC3621" /note="KEGG: cac:CAC3621 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_002459482.1" /db_xref="GI:219669047" /db_xref="InterPro:IPR001080" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260034" /translation="MTASVDENCIGCGACASICPEIFRMNDEGLAEAYVNPVPSELEE SAQEAADGCPTDAIHLD" gene complement(3244487..3245371) /locus_tag="Dhaf_3024" /db_xref="GeneID:7260035" CDS complement(3244487..3245371) /locus_tag="Dhaf_3024" /inference="protein motif:PFAM:PF01077" /note="PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; Domain of unknown function DUF1858; KEGG: pth:PTH_1506 NAD(P)H-nitrite reductase" /codon_start=1 /transl_table=11 /product="nitrite and sulphite reductase 4Fe-4S region" /protein_id="YP_002459483.1" /db_xref="GI:219669048" /db_xref="InterPro:IPR005117" /db_xref="InterPro:IPR006066" /db_xref="InterPro:IPR006067" /db_xref="InterPro:IPR015077" /db_xref="GeneID:7260035" /translation="MKFTLEMKLKDIMAANPKTVEAMQELGLHCLGCPFSVNETLLNA AQMHKLDPEKLLEAVNSVEQGEMSEAAKAKAQPKGAILQMDKKTFAIAPHIPAGVATP EILRKIADVAEKYNAAAIKVTSAQRIAIVGLKPEVIPAAWDDLGMDPGHAIGLCVRSV KVCPGMTFCKRGLQETLGIGMEVDKRYHGMSLPAKFKIGIAGCPNKCTDSMNVDLGIM GTSKGYHVYVGGNGGVKPRRGDLLLENLQSDQLIPVIDAVMEYFKENAKPQERLGRLI DRVGLEGLQEAAQDVVNA" gene complement(3245392..3245538) /locus_tag="Dhaf_3025" /db_xref="GeneID:7260036" CDS complement(3245392..3245538) /locus_tag="Dhaf_3025" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459484.1" /db_xref="GI:219669049" /db_xref="GeneID:7260036" /translation="MADTKKENIERECSHCGTTSELTPVITYVHQGDEKHVCVHCLPM LIHG" gene complement(3245748..3246206) /locus_tag="Dhaf_3026" /db_xref="GeneID:7260037" CDS complement(3245748..3246206) /locus_tag="Dhaf_3026" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459485.1" /db_xref="GI:219669050" /db_xref="GeneID:7260037" /translation="MARSRYVWIMGITLVCLLGIVAWKSPQSVMVSLTQPHYADSPQA AVQRFWGYLDTRQLELAEQLLMAKELNPLGQQEFELWKAQVKNNPLISLKKMELADSP QPNSVLVNVEWTSPAKEKIVQTYVMETQATSEGWKIIQIQKLDVQSLALQ" gene complement(3246412..3246762) /locus_tag="Dhaf_3027" /db_xref="GeneID:7260038" CDS complement(3246412..3246762) /locus_tag="Dhaf_3027" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459486.1" /db_xref="GI:219669051" /db_xref="GeneID:7260038" /translation="MDNQQVNWANVGLRMVQGLTTVIDAIRQLDAQEASLVMKLLGKT CMRTMKEGVGHQFGIALVETSAQLAMSEKLVVEDVLKIISSIIGRLYFTASSEEEKLL VAQLEDAVKNYQII" gene complement(3246914..3247441) /locus_tag="Dhaf_3028" /db_xref="GeneID:7260039" CDS complement(3246914..3247441) /locus_tag="Dhaf_3028" /inference="protein motif:TFAM:TIGR00473" /note="TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: hmo:HM1_2544 CDP-diacylglycerol--serine O-phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol/serine O-phosphatidyltransferase" /protein_id="YP_002459487.1" /db_xref="GI:219669052" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR004533" /db_xref="GeneID:7260039" /translation="MSGKPIKMDMIPSFFTLGNLFFGFLSLLWTMNGGYKMAAGFILL SVLMDSMDGKVARKLSVSSDFGKELDSLCDVVSFGVAPAILTYQLVLATHMGVWGMLL AAAFALCGAVRLARFNVLNISTHFLGVPITFAGGLMALMVLFYRNLPWLVFPVALAVL AVLMVSTFKVPKLGK" gene complement(3247592..3250381) /locus_tag="Dhaf_3029" /db_xref="GeneID:7260040" CDS complement(3247592..3250381) /locus_tag="Dhaf_3029" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR01407" /note="KEGG: mta:Moth_1154 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DnaQ family exonuclease/DinG family helicase; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2; DEAD-like helicases" /codon_start=1 /transl_table=11 /product="DnaQ family exonuclease/DinG family helicase" /protein_id="YP_002459488.1" /db_xref="GI:219669053" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR006054" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR006310" /db_xref="InterPro:IPR006555" /db_xref="InterPro:IPR013520" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014013" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260040" /translation="MIKGKIVVIDIETTGFDIYNDEIIEFAALCIEEGEEAEAFSVLI SPRRQVPERILRLTGISPEELKQAGSLQAYRDKILDLFQDAIIVGHNVEFDLGFLEQA LTIHFENTLWDTLEIARILYPNMPKYKLGDLTKSLGLTPLEKAHRALFDARAAWELLQ ACWEKGLTLDLGFYQRALALAGNARVAGFLRELEKTVKRKFPERLIRTDLVLYEQDLG LFEELEEEETFSEDVGWIESCFSSGGILENKLKSYESRLGQLQMAKAVGESLTGSTHI VIEAGTGTGKSYAYLIPGLWWSKKTGKKVVVATHTIPLQEQIFKKDLPLLAQVLPFSF RGALLKGKSNYICLKRWSFTLGVTAELAPGERLALLSVMVWLRETTTGDWQEVSQIPS LNKLWGSLNCEEESCIPGKCSHANRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEKNI LPEYHELIIDEAHHLHQAALEQLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVW ERLLSVALWERFRGYLEKLPEACDELYQQAEELFATFAQIVGNELSYRLTVHCHQESW WPTVAVQIENLLGRLKIITDLLKAMLNLLDAQDDEDSAALAHEISGRIRNLEEMRECF VLAQQVDQPTRVSWLEQSNRILLKTSPVDVSNLLKEKLFAPLDCAVLTSATISIANSF QHFLREIGLDESTPSLLVDSPFDYERQMQLLVVKDLVDVKHCDLFNTEEVALFISEVT ERMQGRTLVLFTSHRFLREIHLPLSRYLGGSGIELLAQGIDGGRQAILEAFLNNSRSV LLGASSFWEGIDIPGDALSCVILVKLPFGPPNRPLIAARSEYLEAQGRNPFYEFLLPE AVLRFKQGFGRLIRSKSDRGLVILCDGRVIHKRYGRHFLSSLPVKTHIRTSRSQILDK IDLWFDEEYQKELLL" gene 3250519..3251253 /locus_tag="Dhaf_3030" /db_xref="GeneID:7260041" CDS 3250519..3251253 /locus_tag="Dhaf_3030" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459489.1" /db_xref="GI:219669054" /db_xref="GeneID:7260041" /translation="MIKLRRISSLMCLILLLFILSGCADRPFLTKEGTYSIVSVSAED TIQRTPIELTWNSNIAVMQKLLLEASFVLSDLHSIPEAEPGEALAQGDLASAPPQQSE DALVLSEERATITADALEPAKDPPASKEDGQATPNVSDGGAADETPGSLPGEPTGTVL LEATFPEVKPFELLIDNELKTLHISSIQIEVIGNHPSRVLLNQSIVLQGIANPNLQSA FEEYLKMQQKTEQIPGNAQVKTHSAH" sig_peptide 3250519..3250593 /locus_tag="Dhaf_3030" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.981 at residue 25" gene complement(3251316..3251942) /locus_tag="Dhaf_3031" /db_xref="GeneID:7260042" CDS complement(3251316..3251942) /locus_tag="Dhaf_3031" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459490.1" /db_xref="GI:219669055" /db_xref="GeneID:7260042" /translation="MRVALVVNPVKECQSCTQRDEREVSAHILAYQIAHQLLSSVPGQ IQVDGSRLIVNLQAHDPLHFDLRSGSLYTKNLNIPLEQRYRKEKGLEELARQIKEEIQ ITPLDTEHHVDPLMTLIVKLIEIYHARCGLHISSVQCQENKTIWEVRLHEDGPSGWIQ SDGVLRNRFGEEMNLSEWMHLRPEKLAMYVFGFNRFCRHFPSPVKANP" gene complement(3252165..3252428) /locus_tag="Dhaf_3032" /db_xref="GeneID:7260043" CDS complement(3252165..3252428) /locus_tag="Dhaf_3032" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459491.1" /db_xref="GI:219669056" /db_xref="GeneID:7260043" /translation="MLTIVHTFDAPDRDRLLSDIRSGLDTLEQVGGFKYASINEQTNS NEIMVMTKWDDLNAYENWAAGVGENKAFKQATPQMFDVIDERY" gene 3252657..3252971 /locus_tag="Dhaf_3033" /db_xref="GeneID:7260044" CDS 3252657..3252971 /locus_tag="Dhaf_3033" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459492.1" /db_xref="GI:219669057" /db_xref="GeneID:7260044" /translation="MKLVYLKTDFPNGRSHILMRNTESPIPELNHFVLVLTNRGTLWV DVFWPYDDESERYTRRISEQQFWQIFREWRLNGVQLGDTEQVAAVLAKRQLNLKKQQV DA" gene complement(3253094..3253360) /locus_tag="Dhaf_3034" /db_xref="GeneID:7260045" CDS complement(3253094..3253360) /locus_tag="Dhaf_3034" /inference="similar to AA sequence:KEGG:HM1_2194" /note="KEGG: hmo:HM1_2194 FlhB domain-containing protein" /codon_start=1 /transl_table=11 /product="FlhB domain-containing protein" /protein_id="YP_002459493.1" /db_xref="GI:219669058" /db_xref="GeneID:7260045" /translation="MREKAAALAYDQSGAPKVVAKGTGEVARKIIEQAIEYGIPIQKD EVLVETLMRVEYGEEIPPQLYQVVAELLAFVYRLDKLANDRTKS" gene complement(3253357..3255387) /locus_tag="Dhaf_3035" /db_xref="GeneID:7260046" CDS complement(3253357..3255387) /locus_tag="Dhaf_3035" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: LOC795895; similar to LReO_3" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459494.1" /db_xref="GI:219669059" /db_xref="GeneID:7260046" /translation="MELQGLGSINLPLKNQGIQPGQRFLIEVIHRDPSGKAQIRIGGQ VIPALLETSAQPGEKFLATVQRIDASGIVLARDKSTIGDKAALLDPQGIERLYIEFGQ NKENSLSNLLRQILSDGKGTSVPSDGKGVPVPSDGKGTPVPSDGKGTPVPNDGKGAPV PSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDG KGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTP VPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSD GKGTPVPSDGKGASAPGDGKSTPAPGDGKGAPVPSDGKGTPVPSDGKGTPILSDGKGA PVANDGKGAPVLSDGKSSPVLNEAKVVQLSEGKNLNAPGSVQNDSDAERIGLTSKELI ASFVNNTVPQWSSLSKDGFMQLFLLFRGLGLDYERRLKNLDSSKDPEKSNLQAELKRS LKGILLSLLTRGGGNGDEKSLATNLLDRLTGQQILLQGGNSEAPFYLMEIPLQSEGEL YNQTLAIKASRKGNKLDLDHCRLALRAETPTLGELGLEGWIYEAQLTLKVFSDNPERL QSLVEENFAHTREIFNQMGMSLHPITVGPLETADEFHRFLKGELREGVDYQV" gene complement(3255491..3255985) /locus_tag="Dhaf_3036" /db_xref="GeneID:7260047" CDS complement(3255491..3255985) /locus_tag="Dhaf_3036" /inference="protein motif:TFAM:TIGR00040" /note="TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: cth:Cthe_2580 phosphodiesterase" /codon_start=1 /transl_table=11 /product="phosphodiesterase, MJ0936 family" /protein_id="YP_002459495.1" /db_xref="GI:219669060" /db_xref="InterPro:IPR000979" /db_xref="InterPro:IPR004843" /db_xref="GeneID:7260047" /translation="MRIAVLSDTHLRGGQTLPKWVWEQCEVADLIIHAGDVGYPSLLS DLGQIAPLEAVQGNCDGWELAHLPHHKIITCGEIRIGVTHGAYGPGRSTPERALRTFD QDKVDLIIFGHSHIPYQGKQGEILLFNPGSPTDKRRQAQYSMGMIWIEGKIIKARHIY SSVR" gene complement(3255963..3257228) /locus_tag="Dhaf_3037" /db_xref="GeneID:7260048" CDS complement(3255963..3257228) /locus_tag="Dhaf_3037" /inference="protein motif:PFAM:PF07690" /note="PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: tte:TTE2456 major facilitator superfamily permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002459496.1" /db_xref="GI:219669061" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR010290" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7260048" /translation="MASLHKNNSLYRAFPALSHSPFRWFWGGQIISLIGTWTQNIGQA WLVLQLTNSPFLLGLVAAMQFVPTMLFSLQAGAWIDHLPKRKVLIATQTVMMILAFAL AFLVGSGSLRYWMLLVMAFILGVTNTVDVPTRQSFIIELVGREHLANAIALNSAIFNG ARLVGPAIAGVIMGIWGPMWCFLINGLSFIGVLAILIFVPAIPHQEKITPKKETLRKD ILNGLSYIRKTPSILIVMMMMGFLSTIAMNFNVLVPVLAKIDLQAEALGYGLLMSALG LGALIGALTVAIRSAEGPQPRLLLVGAFGLGMFNVVVGLQNTYFFSAFFLAFLGWSMI VFSASANSLIQITVDSQYRGRVMSVYNLVFGGMIPIGSLYAGTLSDLWGARMTFIISG TITLLFMGGIVFWLRRYRKDEGHENSSFV" gene complement(3257433..3257804) /locus_tag="Dhaf_3038" /db_xref="GeneID:7260049" CDS complement(3257433..3257804) /locus_tag="Dhaf_3038" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459497.1" /db_xref="GI:219669062" /db_xref="GeneID:7260049" /translation="MEIDYNLVQRAQMLLTLDHPLSQVRDILLREGYPQEQVIELIDA TEEVLNYLIPPEYDENKIGIDILHPGEATEGRKPGVDILIDKHTGKLSLITPQYQETW KVANEVRKAIKKQQSIGRYYH" gene 3257934..3258377 /locus_tag="Dhaf_3039" /db_xref="GeneID:7260050" CDS 3257934..3258377 /locus_tag="Dhaf_3039" /inference="protein motif:PFAM:PF04657" /note="PFAM: protein of unknown function DUF606; KEGG: drm:Dred_0091 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF606" /protein_id="YP_002459498.1" /db_xref="GI:219669063" /db_xref="InterPro:IPR001991" /db_xref="InterPro:IPR006750" /db_xref="GeneID:7260050" /translation="MNKFLSLPAVIAAISGITMAIQGTLNSQLYQKTSILAATLVVHI IGTVIALIAVMVARVPLLEYNWLSIPWYLYLGGVLSVVIVGLVALSIPKIGVCNATTA IIIGQVGAALIIDHLGLFGAERLAWNPWQLLGLLFFAAGAKLLFS" sig_peptide 3257934..3257996 /locus_tag="Dhaf_3039" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.789 at residue 21" gene complement(3258419..3258973) /locus_tag="Dhaf_3040" /db_xref="GeneID:7260051" CDS complement(3258419..3258973) /locus_tag="Dhaf_3040" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459499.1" /db_xref="GI:219669064" /db_xref="GeneID:7260051" /translation="MPNSWGRPPRNELWQDIQALAFWVLIIGVGAFILFPNFFSDVYS RLTDPVSKLADTTVGTYDPGYDGYVADDPYSIDPYTNTTSNYLYSAGNTYGSSPTSLY LGNEVATGYWVLFVADGDFKQFSVNSEGYAFLLRLIERDQTGEGKNTLILAANGQIRK FTVTNEIYQIVTNMAAIETRAKAG" gene 3259126..3260901 /gene="uvrC" /locus_tag="Dhaf_3041" /db_xref="GeneID:7260052" CDS 3259126..3260901 /gene="uvrC" /locus_tag="Dhaf_3041" /inference="protein motif:TFAM:TIGR00194" /note="The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit C" /protein_id="YP_002459500.1" /db_xref="GI:219669065" /db_xref="InterPro:IPR000305" /db_xref="InterPro:IPR001162" /db_xref="InterPro:IPR001943" /db_xref="InterPro:IPR004791" /db_xref="GeneID:7260052" /translation="MEILREKLSLLPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYF TGSHNGKTQLMISLIADFETIITDSEVEALLLECNLIKKHNPKYNILLRDDKTYPFIT ITDEAHPRILVTRQVKKGAGKYYGPYPNATAAKEAARLLNRLFPFRKCRQIPNKPCLY YHLGQCLGPCQVDVPKEAYDKIRKEAAAFLKGDQGAILKALEKKMKEASENLEFERAK EYRDLMEDLKKVGEKQNITLNDFVDRDVVGYAYTQDQLCIQIFYLRQGKLLSRDNFIF PYYEEPEEAFVSFLAQFYTESSALPQEILLPPLDISVLTKLFPMVVPQKGQKRDLVQM AMENAQTTLHEQISIEIRNLTECTQALAEIGNALGIPSLRTIESFDISNIAGTHSVAG MIQFLDGKPNRSQYRKFKIQPMPNMDDTASMHQVIERRYARLQQENLPLPDLILVDGG KGQIHAALAALHSLNAAIPVAGMVKNDKHQTSALIDAMDRIHSLDRRSAGFRLLERIQ NEVHRFAITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ SGLPAPAAAAVYQHFNSHKEENHDS" gene 3260891..3261046 /locus_tag="Dhaf_3042" /db_xref="GeneID:7260053" CDS 3260891..3261046 /locus_tag="Dhaf_3042" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459501.1" /db_xref="GI:219669066" /db_xref="GeneID:7260053" /translation="MILNYRVELCRQCYYKRMKQCAKTDLYIHNRTLAELGGECKSYL PVPWLPY" gene complement(3261245..3262069) /locus_tag="Dhaf_3043" /db_xref="GeneID:7260054" CDS complement(3261245..3262069) /locus_tag="Dhaf_3043" /inference="protein motif:PFAM:PF00877" /note="PFAM: NLP/P60 protein; KEGG: cbe:Cbei_0487 NLP/P60 protein" /codon_start=1 /transl_table=11 /product="NLP/P60 protein" /protein_id="YP_002459502.1" /db_xref="GI:219669067" /db_xref="InterPro:IPR000064" /db_xref="GeneID:7260054" /translation="MDSSSKRGWVASVVLSGTLLVSSLPGIYGPGSAAVPVTSSESIL LRNASLFQTQQAQTQTVADTVLSPEVQAEKKDVIRQPEAAAMALAYASVSVAADTDSQ RESQQFTEEAQEDIVSTPEETMAAMDIEKLSQERALRQAAAAPVQEISRGGSSKVEEI SDNAQKLIGTPYVFGGTTTNGFDCSGFTQYVFKGSGIDLPRTSYAQYGIGTAVSKDEL QIGDLVFFATYDSGASHVGIYIGEENFIHAARSGIKITGLSDSYYAGRYLGARRVF" sig_peptide complement(3261245..3261346) /locus_tag="Dhaf_3043" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.843) with cleavage site probability 0.465 at residue 34" gene complement(3263123..3263365) /locus_tag="Dhaf_3044" /db_xref="GeneID:7260055" CDS complement(3263123..3263365) /locus_tag="Dhaf_3044" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459503.1" /db_xref="GI:219669068" /db_xref="GeneID:7260055" /translation="MRWLGRILIIFILLMAAKGLFAPEQPQAYISAPRTQVLLEEIHW RSVQIQQAARDLPGSIEVMLRKIFSDGKPASEAKSV" gene complement(3263415..3264014) /locus_tag="Dhaf_3045" /db_xref="GeneID:7260056" CDS complement(3263415..3264014) /locus_tag="Dhaf_3045" /inference="protein motif:TFAM:TIGR00277" /note="KEGG: tko:TK0480 HD superfamily metal-dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002459504.1" /db_xref="GI:219669069" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7260056" /translation="MPETNQDPLSQVINAVQGIYGRKDQAHDLEHALRVRAWGKQIGI QEGADLLIVELAAILHDIGRSGTLSKTHAESGAALAGGILHKCGYPEDTIEAVKAAVL SHSREGYEPETLEAKILYDADKLDFVGPMGIARLFVWLGKEGKPFFGPDSCESFYRER IRHYHEHIHTQTARALFEPLFLYSENFWSELEKMRLKKG" gene complement(3263974..3264627) /locus_tag="Dhaf_3046" /db_xref="GeneID:7260057" CDS complement(3263974..3264627) /locus_tag="Dhaf_3046" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: gka:GK2807 acetoin utilization protein" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459505.1" /db_xref="GI:219669070" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260057" /translation="MKQTFPTHKGELIVEGPVTAESLSQLSFDDDLRAFRPPKRQKEA LIEISEIPDGRIIIARIENDIMGYVTFHPPDCFERWAKGPPELLELGAIEVSPKVRGL GVGKKLLQVAFSDPAMENHVVIATEYYWHWDLERTGLRVWEYREVMDRLMSSAGLHIR ETDDEEICSHPANMLTVRYGKNLSQSSIDHFEKILFANSERGDCLAGNESRPSKPGN" gene complement(3264663..3265562) /locus_tag="Dhaf_3047" /db_xref="GeneID:7260058" CDS complement(3264663..3265562) /locus_tag="Dhaf_3047" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: pth:PTH_1355 transcriptional regulator" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459506.1" /db_xref="GI:219669071" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="GeneID:7260058" /translation="MPMFLVRSLSQDIIGESKGLRQAVEGCRKAAKENAPVMFQGEVS TGKLLLAGFLHKESKHSRQPLLVVDCIKDEDMIHELLAPGFECKQLDRYEGGSIYFRE VATLSLGKQNQLYKALEKIEKRKIRAFLSSSQNIHLMRMEKAFDPDLYDYGSQWEIAV PPLRQRKEDILPLVRHYIGVFNLKLRKSIQGLTPQAEEILLAYRWPGNVDELKQIINR AMHLSNESHISQRHLSDNLGISKEDGFSHGVMPLERMEEILLRSALERYGFTLEGKKR AARALNISLATLYNKLKRYNLNP" gene complement(3265751..3267037) /locus_tag="Dhaf_3048" /db_xref="GeneID:7260059" CDS complement(3265751..3267037) /locus_tag="Dhaf_3048" /EC_number="3.3.1.1" /inference="protein motif:TFAM:TIGR00936" /note="catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine" /codon_start=1 /transl_table=11 /product="S-adenosyl-L-homocysteine hydrolase" /protein_id="YP_002459507.1" /db_xref="GI:219669072" /db_xref="InterPro:IPR000043" /db_xref="InterPro:IPR006140" /db_xref="InterPro:IPR013116" /db_xref="InterPro:IPR015878" /db_xref="GeneID:7260059" /translation="MKEGVTWLSQDNMESTIRDIGLAPQGQLKIDWVQAHMPVLNTLR EEFEKTQPFQGKKVTICLHLEAKTAYLAKVVQAGGAEVTVAASNPLSTQDDVVAALVA GGVHAHAWYGATDEEYHQHLHKALDFEPDYIIDDGGDLVSTLHKERRELLPKVLGGAE ETTTGILRLRAMEKNGELAFPMMAVNDAEMKYLFDNRYGTGQSVWDGIMRTTNLVVAG KTICVVGYGWCGKGVALRAKGLGARVIICEVNPIKANEAWMDGFEVMPMLAAAPLGDF FVTVTGNKNVISGEHFQVMKDGAILANAGHFDVEVNKVQLAAMAQSCHEVRRNIEEYL LQDGRKIYLLAEGRLVNLAAGDGHPAEVMDMTFALQALALHYLATAKTPLEPKVYSVP TEMDMRVAELKLKTLGLSIDQLSEEQKSYLASWQHS" gene complement(3267068..3267913) /locus_tag="Dhaf_3049" /db_xref="GeneID:7260060" CDS complement(3267068..3267913) /locus_tag="Dhaf_3049" /inference="protein motif:PFAM:PF10609" /note="PFAM: Mrp protein; KEGG: dau:Daud_0091 hypothetical protein" /codon_start=1 /transl_table=11 /product="Mrp protein" /protein_id="YP_002459508.1" /db_xref="GI:219669073" /db_xref="InterPro:IPR000808" /db_xref="GeneID:7260060" /translation="MSDACGSCPSASSCTTGSCPSTQPEKTKAQQASNIKNVIAVMSG KGGVGKSSVTSMLAVSLMRQGFKVGILDADITGPSIPRIFGLRDKANMNEVGVIPGET SHRIKVMSLNLMIPNEDDPVIWRGSIITQLVQQFWTDVVWGELDYLLIDLPPGTGDVP ITVMQSLPVSGVVIVTSPQQLAGMIVRKAINMVKKYDATIYGLVENMAYVACPQCEER IEIFGKPHGEAEAAQNEIPYLGQLPIDPVLATMSDLGKIEDYESAGFTQIAKNLAEVI QEKQK" gene complement(3268752..3270551) /locus_tag="Dhaf_3050" /db_xref="GeneID:7260061" CDS complement(3268752..3270551) /locus_tag="Dhaf_3050" /inference="protein motif:TFAM:TIGR00181" /note="TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: hmo:HM1_0557 oligoendopeptidase F" /codon_start=1 /transl_table=11 /product="oligoendopeptidase F" /protein_id="YP_002459509.1" /db_xref="GI:219669074" /db_xref="InterPro:IPR001567" /db_xref="InterPro:IPR004438" /db_xref="InterPro:IPR013647" /db_xref="GeneID:7260061" /translation="MEQAKLKTRSEIPEQYKWHLEDIFPSDQAWEEEFLKAEKLLERA ESFQGHLGDSAEALLTCFDWMDEVGQSVGEIYTYARMRRDEDNRNAHYQALTDRAGAL SVRVGSALAFVVPEILALPEGRLQEFRQANEKMALYDHALEDILRKREHVLSSQEEKL LAEMGEIAEGPSTIFGMANNADLKFPSIKNEQDEEVELTKGNYIQFMESENRRVRQEA FETLYGTYQKQINTWAAILNSNIKGDVFFARARRYPSAIEASLHDDKVPLGVYDALID TVREFLPEMHRYVKLRKKALGLDELHMYDIYVPIVSEVKMTIPYQEAVAMCREGLKPL GSDYGKVLEEGFTSHWIDVYENQGKTSGAYSWGTYRSHPYVLLNHQDTLDSMFTIAHE MGHSLHTYFSNRTQPHIYAGYKIFVAEVASTLNEALVMDHLLKTTEDPKLLAYLLNHY LEQFRGTVFRQTMFAEFEKKTHALVEQGEALTAELLSSTYLKLNEDYYGPDVVMDPQI AIEWARIPHFYNAFYVYKYATGFSAATALARKILDEGEPAVERYLRFLSSGSSDYPIE LLREAGVDMETPVPVREALQVFTSLLDRLEGLL" gene 3271149..3272009 /locus_tag="Dhaf_3051" /db_xref="GeneID:7260062" CDS 3271149..3272009 /locus_tag="Dhaf_3051" /EC_number="4.2.1.51" /inference="protein motif:PRIAM:4.2.1.51" /note="PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: tpd:Teth39_0983 prephenate dehydratase" /codon_start=1 /transl_table=11 /product="Prephenate dehydratase" /protein_id="YP_002459510.1" /db_xref="GI:219669075" /db_xref="InterPro:IPR001086" /db_xref="InterPro:IPR002912" /db_xref="GeneID:7260062" /translation="MMNIGYLGPKGSFSEEALQLFLTTQSDLLEPPLNLIPFTTIPKL LIACQNLEIEGAFVPLENSTEGQVGVTMDMLGQTESLYIMREFIFPVDQCLITAQPLH LAQIKQVYSHEQALGQCRDFLETHLAQAEQHSSPSTAEAVTKIAQNPDQPWAAIGPRR AAEIYNLHCKSEKIQDSMLNATRFIFVGHHLAEMNEEDKTSLLIITGDTPGALAHALQ EFALRNINLSRIESRPSKKKLGEYVFFVDIDGYVFSPSIQEALWALKDKGVSTKLLGS YPKAKLSAKE" gene complement(3272015..3272539) /locus_tag="Dhaf_3052" /db_xref="GeneID:7260063" CDS complement(3272015..3272539) /locus_tag="Dhaf_3052" /inference="similar to AA sequence:KEGG:Nther_2065" /note="KEGG: nth:Nther_2065 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459511.1" /db_xref="GI:219669076" /db_xref="GeneID:7260063" /translation="MGSILQFVLIIITINITYVTLTTIRFILMIKGMRVYASLLSVLE VFIYIMGLSIILDNLDSYWNIAAYCCGYGVGVYLGSRIEERLALGYIMAQVIVECEYQ GLAGELRDAGFGVTSWLGEGKTGPRMVMMVLAKRNRQKELLNRIDSLCSNAFVIFEEP KNFRGGFWAKKVLH" gene complement(3272724..3274208) /locus_tag="Dhaf_3053" /db_xref="GeneID:7260064" CDS complement(3272724..3274208) /locus_tag="Dhaf_3053" /EC_number="4.2.3.1" /inference="protein motif:TFAM:TIGR00260" /note="catalyzes the formation of L-threonine from O-phospho-L-homoserine" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="YP_002459512.1" /db_xref="GI:219669077" /db_xref="InterPro:IPR000634" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR004450" /db_xref="GeneID:7260064" /translation="MLYESTRGNFPDQTGKEAIALGMVPVGGLFVPKELPQIHWEEVR GISYPELAQLIFKRYLPDFPEEKCVETSKIYTDGVFDSDNPAPLVNVGDMGILELWHG PTAAFKDMALQALPHLLGESMQVLTHTDKVLILVATSGDTGKAALEGFKNVEGTEIMV FYPEHGVSTVQEQQMTTTDGVNTKVVPVVGNFDQCQSAVKEIFGNPDLREKFKEQGIA FSSANSINWGRLLPQIIYYYWAYLQGVESQRIRPGEKMNVVVPTGNFGNILAAYYAKE MGLPIHQLICASNENNVLTDFFSQGVYNRKRPFFVTSSPSMDILISSNFERFLYEVSG RDGSKVGKWYDDLQALGEFTVDSDTLAKARKAVIAGWAGEADVLAVIQSVYKEHAYVL DPHTAVAVKVYQDYLRESGDNTFTMIASTASPFKFAKTVLEGIDADALEDDEWANLRK LREITGWSIPKGLQGLEDKETFGLEPVQPEEIPELIQKVYIPNR" gene 3274375..3275763 /locus_tag="Dhaf_3054" /db_xref="GeneID:7260065" CDS 3274375..3275763 /locus_tag="Dhaf_3054" /inference="protein motif:PFAM:PF00485" /note="PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase" /codon_start=1 /transl_table=11 /product="phosphoribulokinase/uridine kinase" /protein_id="YP_002459513.1" /db_xref="GI:219669078" /db_xref="InterPro:IPR000764" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR006083" /db_xref="GeneID:7260065" /translation="MSVMETTHRQYRQTLIFGLIRIVEELFPQEEIKIQYSILDGIYC ELENSPLSPREVAQIEEKLHHWLESKPKIMSCAEEDGFFHTKVNHIFVKSLYPAMHPA DTYYPFTLIFYHPGFILLFSNPEHPCELPNFVPPEKLAATFLESQRWVENLHLDKVGS INLNIRKGKTTELISLAEALHEKKISLIADRILEQRRNLRIILISGPSSSGKTTFAQR LSTQLQVNGIRPIALSLDNYFCDREHTPLDEYGQYDFEALEALDLPLLNQHVKALIHG EEIECPIFDFVAGRRQPEGIRMKLEPDEILVMEGIHALNPRLLPSLERSHLFKIYISA LFQPNIDTHNRISTTDVRLIRRLVRDDKYRGINPEKTLNQWSSVRRGENNNIFPYQEE ADVMFNSSLLYELNALKAYAEPLLISIPKDHPYYATASHLLRVLYHFEILDIAKVPFN SILREFIGGGIY" gene complement(3275770..3276081) /locus_tag="Dhaf_3055" /db_xref="GeneID:7260066" CDS complement(3275770..3276081) /locus_tag="Dhaf_3055" /inference="protein motif:PFAM:PF01541" /note="PFAM: Excinuclease ABC C subunit domain protein; KEGG: swo:Swol_2428 hypothetical protein" /codon_start=1 /transl_table=11 /product="Excinuclease ABC C subunit domain protein" /protein_id="YP_002459514.1" /db_xref="GI:219669079" /db_xref="InterPro:IPR000305" /db_xref="GeneID:7260066" /translation="MYWVYILHCADHTLYTGSTPRLERRIQEHNQGSGAKYTRGRRPV SLRQAWIVENRSQALRLEAFIKKLTRKEKEYLIDDPQDLLRLAKEKGYDFVIKIGDKS D" gene complement(3276089..3276844) /locus_tag="Dhaf_3056" /db_xref="GeneID:7260067" CDS complement(3276089..3276844) /locus_tag="Dhaf_3056" /EC_number="5.3.3.10" /inference="protein motif:PRIAM:5.3.3.10" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mta:Moth_1492 5-carboxymethyl-2-hydroxymuconate delta-isomerase" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate Delta-isomerase" /protein_id="YP_002459515.1" /db_xref="GI:219669080" /db_xref="InterPro:IPR002529" /db_xref="GeneID:7260067" /translation="MQYIRFSYEDRICFGQLQGEAIALLDRSYLEAGCQKTGQILQAD QVRLLAPVEPTKIVCIGLNYAKHIEELGHDFHDDPVIFLKPVTSLVGPEDEIILPAMS QQVDYEAELVVVIGKTAKDLAEDQAEDYIFGFTCGNDVTARDLQKKDGQWTRSKGFDT FCPIGPWIVRDLDYRNVKIRSVLNGEVKQSSQTSHLIHSVPKLVSYISKIMTLNPGDL IMTGTPEGVGPMKTGDAIAIDIKGIGRLHNLVR" gene 3276942..3277568 /locus_tag="Dhaf_3057" /db_xref="GeneID:7260068" CDS 3276942..3277568 /locus_tag="Dhaf_3057" /EC_number="4.2.99.18" /inference="protein motif:TFAM:TIGR01083" /note="KEGG: cno:NT01CX_1394 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; Endonuclease III/Nth; SMART: iron-sulfur cluster loop" /codon_start=1 /transl_table=11 /product="endonuclease III" /protein_id="YP_002459516.1" /db_xref="GI:219669081" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR003265" /db_xref="InterPro:IPR003651" /db_xref="InterPro:IPR004035" /db_xref="InterPro:IPR005759" /db_xref="GeneID:7260068" /translation="MSNVNSILSILAATYPEAHCELNFSTPFELLIATMLSAQATDKK VNQVTARLFRDYKTPEQFLTMSLAEMEQAIKELGLYHNKAKNILATCHILVANYGGEV PGSMEALTQLPGVGRKTANVVLSNAFHIPAMAVDTHVLRVSNRLGLASGTNPDLIEKQ LMSCIPCSQWIQAHHWLIWHGRRICAARNPKCPECPLSPLCPSRLLPA" gene complement(3277605..3278663) /locus_tag="Dhaf_3058" /db_xref="GeneID:7260069" CDS complement(3277605..3278663) /locus_tag="Dhaf_3058" /inference="protein motif:TFAM:TIGR00277" /note="KEGG: hmo:HM1_0446 metal-dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002459517.1" /db_xref="GI:219669082" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="InterPro:IPR013976" /db_xref="GeneID:7260069" /translation="MRQVSVNSLKIGDVLGKTIYSSNGRVLLGKGVKLTPLYISKMRD MGITIVYIEDDRFEDVIPEDVIDEENRREAMAIIEQASQAVRLGKNLDDFHLRNIVSK IVEEILFKKDILVSMMDIRSKDNYTFAHSVNVCVLATVLGKVMHLDKEKLETLAIGAL LHDIGMVHLPQNILENHEQRTEEEEEEYRTHTTLGFEELRKRKELNLVVAHIAFQHHE YIDGTGYPRQLKGDEIHPLAQIVAIADLYDKLTSDNSGMKRVMPHEACEILMGLVGKQ FPLEPVRLFLRNIAAYPTGSTVRLNTGEIGVVVDQNPSIPTRPVVRVYDEMNYEAGQG KEYNMVDNRTVFINEVLV" gene 3278781..3279536 /locus_tag="Dhaf_3059" /db_xref="GeneID:7260070" CDS 3278781..3279536 /locus_tag="Dhaf_3059" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: ctc:CTC01944 transporter" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF81" /protein_id="YP_002459518.1" /db_xref="GI:219669083" /db_xref="InterPro:IPR002781" /db_xref="GeneID:7260070" /translation="MLDDIILLCILGFIAALIDAIAGGGGLISLPALLLVGVPPHHAL GTNKFASTIGSLTSSMTYARSGKVFFSVVKWQIPFTLMGTCFGVWSVLHLSADLLTKA VPVLILLVGFYTLWQKNLGVEDRFQGVTPLKRFWGFLFAFALGFYDGFFGPGTGAFLI FGYITLYGFNFIVSSANAKVLNFVSNLVSLILFAISGKIIYAYGIPMALSMFLGSRIG TTLAIRKGSALIKPIFITMSLLVALKLMIENYR" gene complement(3279604..3280725) /locus_tag="Dhaf_3060" /db_xref="GeneID:7260071" CDS complement(3279604..3280725) /locus_tag="Dhaf_3060" /inference="protein motif:PFAM:PF04294" /note="PFAM: VanW family protein; KEGG: amt:Amet_3626 VanW family protein" /codon_start=1 /transl_table=11 /product="VanW family protein" /protein_id="YP_002459519.1" /db_xref="GI:219669084" /db_xref="InterPro:IPR007391" /db_xref="GeneID:7260071" /translation="MLRRKPWVFLLVILFSQLSLSILLGATVTYGAGYAKAPEGLTVW EKDLGGMTKDEAYAVLAEVIPKAVVYDRTVYFLELNQTDQDLKDYLASQYIISTGNVI TDAFEYLHRMSRTIPSPELLNQEEVLAQLRKFALDIDQPGKAAEAYYENGEIVIEEGS LGVRLDVDKSWEQLQQSIGMETVPLVTEVIVVHPTTAELEKVKDPLGDYTTYFNPSFH ERVTNVRLAAEAINGLILPPGGEFSFNDTVGKREPERGYLPALMYMGNRVVTDDGGGI CQDSTTLYQATKQARLEVLERYSHSLPVSYVPLGQDATVAYGALDFRFRNTTQGYLLL NAATGGNWIRVRIFGVADSEHPALDEPDGYPVKPREWSK" sig_peptide complement(3279604..3279699) /locus_tag="Dhaf_3060" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.494 at residue 32" gene complement(3280740..3281546) /locus_tag="Dhaf_3061" /db_xref="GeneID:7260072" CDS complement(3280740..3281546) /locus_tag="Dhaf_3061" /inference="similar to AA sequence:KEGG:Swol_0459" /note="KEGG: swo:Swol_0459 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459520.1" /db_xref="GI:219669085" /db_xref="GeneID:7260072" /translation="MKASVEIKGLRIISISEGTQVGTVKDFILNPQKGSLDFFVVDQP SDYFGAKVIAYADIVGLGEFALTVPNPDVIQSVAGNNVAQELIKQGVEVIGTKVLTKK GALSGEVKEILIDEETGKIAQCLFTDNQGEEHQVAGEQIITYGKELLIIEGNPGEIKA EAVSEPVSTVNVVSPVSPVSAGPVEEQVPQAVAVPVEETVTEQQNEVTEFNLFEQRQL QYFVGKAVVQDIVLDNGELLRAGEPMTEETIRQITTRNKLMEITSLLHKN" gene complement(3281555..3282568) /locus_tag="Dhaf_3062" /db_xref="GeneID:7260073" CDS complement(3281555..3282568) /locus_tag="Dhaf_3062" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: LOC691008; hypothetical protein LOC691008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459521.1" /db_xref="GI:219669086" /db_xref="GeneID:7260073" /translation="MRGEQKISLYWTTVILVSAPFIVITTRMAYRFNLKKWEAALVSF LMIAFALVFPIVLRREKVLHWLFGACGLLLFTVGITAIRNRSQSPPESSIIVDEPKED DMFCPDEAAISHQEEVAISYQEEDTVSLSAEDGPSDPVEEKRADTPEVLLPEHEQEAT EEEAVKEEAGDAEPMEIFVEDEESVETEANRCEEASLLEEVTKLEEIRPEEKSINHDI PLASEPVEKTEPPLIHMKEFSLQELIEKGFQAKEQERFHLAAEWFILALDQKPSYDIA FYLIVETCEHWKNGSSIYDALDKVAPYINEYIQNAPPEWRTQLMEWLDNENLPVPGEF RKD" gene complement(3282636..3283997) /locus_tag="Dhaf_3063" /db_xref="GeneID:7260074" CDS complement(3282636..3283997) /locus_tag="Dhaf_3063" /inference="similar to AA sequence:KEGG:HM1_2740" /note="KEGG: hmo:HM1_2740 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459522.1" /db_xref="GI:219669087" /db_xref="GeneID:7260074" /translation="MLTLAHWVFLFFILMIIVTLFFRKPPILPAAIGLFGVGLAESRN GIEAVQISFRALILATSNLLGVIVLIGLVVALTQLLQKTKADQILVRPLLKIKSMSLA YWAVGITMWVLTLLIWPTPALTLLGAVVVPILGRIGIHPLVLAASLAIFGKGIGLSGD FIIQGAPSLVSKATGIPVTVLLSASFPVVILSGICGAGFGYIALRFFLSGEQGAADYP RSEPGSEPLQIAHERGRLLAGIMALGYTGTVFMILMFKIHGDEASGLIGGVTLLILCI CTVLTEGKNAFSQFINYVKDGLRYAMGVFAPIVMMAGFFFMGTAAGSEQIFLKEGAGF FYDYTILLAEWIPLTKWTVVGLVTFTAVLASLDGSGFSCLPLVGGMAIALSQVSQIPA VPLAVLGQVVGIWTGAALIPWGFAAVTSAVAGVDVQRLMKYILPAYLAAILTALGWTL FQL" gene complement(3284126..3284281) /locus_tag="Dhaf_3064" /db_xref="GeneID:7260075" CDS complement(3284126..3284281) /locus_tag="Dhaf_3064" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459523.1" /db_xref="GI:219669088" /db_xref="GeneID:7260075" /translation="MLGWIAMFILGAFLLSCGVAVFASCRQIFNVTFNSFNTPKRTKK FVKPAQA" sig_peptide complement(3284126..3284197) /locus_tag="Dhaf_3064" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.899 at residue 24" gene complement(3284504..3285136) /locus_tag="Dhaf_3065" /db_xref="GeneID:7260076" CDS complement(3284504..3285136) /locus_tag="Dhaf_3065" /inference="protein motif:PFAM:PF01205" /note="PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ooe:OEOE_1318 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0029" /protein_id="YP_002459524.1" /db_xref="GI:219669089" /db_xref="InterPro:IPR001498" /db_xref="InterPro:IPR015269" /db_xref="InterPro:IPR015796" /db_xref="GeneID:7260076" /translation="MESYVTVFESSTWEQVIEKSRFIGVVHPVQNLEEVEQRLHDIRQ NYPNARHYVYAYRLHQGKLEKSTDDGEPQGTGGRPVLDVLQYRQIWDVLIVVIRYFGG VLLGAGGLTRAYGGTARQLMDKASIGRLVPHLIYEIEAGYDWYEPLKYWFKQFSWATG EEEFLATVKLQVYIPWEENQRFREWLADFADQKIVPREIGNTLCPLSNEL" gene complement(3285142..3285537) /locus_tag="Dhaf_3066" /db_xref="GeneID:7260077" CDS complement(3285142..3285537) /locus_tag="Dhaf_3066" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: pth:PTH_1667 thioesterase" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_002459525.1" /db_xref="GI:219669090" /db_xref="InterPro:IPR006683" /db_xref="GeneID:7260077" /translation="MAEITIGVKGRAEKIVDQTNTAKTMGSGSLDVFATPALVAMMEE AAVSALTLSEEQSSVGVSLDIKHTAATPLGMKVWANAELVEVDRRRLVFKLEAYDDKE LIGSGTHERFIIDVEKFMIKTQAKSGERE" gene complement(3285632..3286351) /locus_tag="Dhaf_3067" /db_xref="GeneID:7260078" CDS complement(3285632..3286351) /locus_tag="Dhaf_3067" /inference="protein motif:TFAM:TIGR01934" /note="TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pth:PTH_1439 methylase involved in ubiquinone/menaquinone biosynthesis" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_002459526.1" /db_xref="GI:219669091" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7260078" /translation="MDFSGKDKAAYVQDTFNSIAKRYDVMNTLMSFGLDKGWRKKAVQ TVEAKPGMTMVDICCGTAQLSLELAMTVGEQGHITGLDFSENMLKKAQENLAGSPYRS IIELRQGDAMNLPFADNSFDGATVGWGLRNLPDLEKGVQEMIRVVKPGGMVVSLDMAK PTMPGFKQGYWLYFNKLVPLMGKIWAGKAKAYQYLHDSAVEFPSQQELANIFARCGLT ETRYQNLAGGVVAIVSGRKPR" gene complement(3286424..3287407) /locus_tag="Dhaf_3068" /db_xref="GeneID:7260079" CDS complement(3286424..3287407) /locus_tag="Dhaf_3068" /EC_number="3.5.1.1" /inference="protein motif:PRIAM:3.5.1.1" /note="PFAM: Asparaginase/glutaminase; KEGG: mpo:Mpop_4846 asparaginase" /codon_start=1 /transl_table=11 /product="Asparaginase" /protein_id="YP_002459527.1" /db_xref="GI:219669092" /db_xref="InterPro:IPR006034" /db_xref="GeneID:7260079" /translation="MQKIKLIATGGTIAMRKDSFGKTVPAVTGHDLLESIPELQESAF WNVEEFSNVASCNFNPERMLQLARRVEEAFADPDCMGIIITHGTDTLEETAYFLELTV KDSRPVILTASQRDASERDSDGPRNLHNSMRIAMDPHAKERGVLIALNEEIHAARDVR KLHTSHVDAFSSGEVGSLGSIDHDEVLWHRKPEPSIKFDLPEKLAKVMICKGYTGMDG RMLECMVDAQVEGIVIEAFGRGNLPPEVVPSIGKITAENIPVVITSRCLFGRTAPIYG YPGGGAELQRRGALFAGDLSTEKVRLLLSIALGQNVSHTRLKEILSRGGVK" gene 3287627..3287893 /locus_tag="Dhaf_3069" /db_xref="GeneID:7260080" CDS 3287627..3287893 /locus_tag="Dhaf_3069" /inference="similar to AA sequence:KEGG:CHY_1145" /note="KEGG: chy:CHY_1145 putative ComF operon protein" /codon_start=1 /transl_table=11 /product="putative ComF operon protein" /protein_id="YP_002459528.1" /db_xref="GI:219669093" /db_xref="GeneID:7260080" /translation="MYELKNHTEDVVQHVLKEYMQKFKLPCDCERCQADIKALTLNQL PSRYCVSLRGEILTHLELDSLPDKTRVLSAIVLAAKQVADTPSH" gene complement(3287922..3288044) /locus_tag="Dhaf_3070" /db_xref="GeneID:7260081" CDS complement(3287922..3288044) /locus_tag="Dhaf_3070" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459529.1" /db_xref="GI:219669094" /db_xref="GeneID:7260081" /translation="MERSESIPIEVQFTANSPFKITALIIQFLVIVLIIVCGSE" gene 3288177..3288851 /locus_tag="Dhaf_3071" /db_xref="GeneID:7260082" CDS 3288177..3288851 /locus_tag="Dhaf_3071" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mta:Moth_0824 Crp/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002459530.1" /db_xref="GI:219669095" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7260082" /translation="MLDPRILRQFTLFSSLADEDLLPLLPQFKTRKYRKGQILFIEGE IGSQVYFILEGQVKLSKTLPNGDEQILDWCGPKDSLAEILLVEPGSYPATAEVLKEST LLVLSNQGMVKILENHPRLAVALIRKLNMRLRMNQEFIRILTSRSTAGILAMLLLRMA KPASSPGEPIYYDATLTNKDLASMIGTSRELVNRTLNQWKKSGVLCLNEDRMEILRPH ELADWP" gene complement(3288834..3289703) /locus_tag="Dhaf_3072" /db_xref="GeneID:7260083" CDS complement(3288834..3289703) /locus_tag="Dhaf_3072" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459531.1" /db_xref="GI:219669096" /db_xref="GeneID:7260083" /translation="MSLRLEAEQAMGLRFPERNGEAVIRFEETMEVPHGAEVLMRGLY RDPDDIKKGFKNLHQETATLLELLMPRRARLKEWLEELPEQPKEAESFLRETSEKIQH QDRKVSQLEHELISKLVESGLEDLFPLPLSAFATLSYTDPCAKIFLRPLGRLAEILKL SPEVLRQVVRVHFLYSLLILAGQDLDGQSCQRGNEDAILIGIASFFTLKHLKKHPPEF QHCYGEWVKAWGGKSFLRLIAQESSVEKVRAAMIFWRRNPELSWDSIWNGLQSFELEK ITSPRPLSSWPVR" gene 3289819..3292107 /locus_tag="Dhaf_3073" /db_xref="GeneID:7260084" CDS 3289819..3292107 /locus_tag="Dhaf_3073" /inference="protein motif:PFAM:PF00270" /note="PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases; KEGG: hmo:HM1_0957 dead/deah box helicase, putative" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_002459532.1" /db_xref="GI:219669097" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR012961" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260084" /translation="MRKTPGRNELIFVSERTYHGLVLDRFQEEALDAIDEGQSVIVAA PTGTGKTLVADYLVEKVMAEGRRIIYTAPIKALSNQKFKDYKQLFGVDQVGILTGDVV LNSEAPLLIMTTEIFRNQVITNDPSLESVSYIIFDEIHWLNDEERGTVWEESIILAPP HMKLLGLSATIANAQQLVDWIGTIRQEDVALIQENRRIVPLEYYYFSRDTGLVNYEKL WKYYRQQIQSAPPTEGSLFAPTNHLDLIKVIQKQYLPALYFVFSRKQCADKASELAYL TNYLNPQEKRQVEDAFLEHFGPESDWSPSTRLLRRLAVKGIAFHHAGLMPSQKVLVEE LFLKRLVHVLYCTETFSVGINYPVRSVCFDTLNKFDGRNFRPLANHEFFQMSGRAGRR GLDERGYSFALVDLNYMEKSPPPRFNINRLEPLTSQFKLSYNTVLNLQATLSYEQIQI YFQKSFAAHSNLHTHGQLIAELAQLEEQFNGKGEHVCRHTDSYACPVKYLPKKKELDR LKRAYQALGPRRQNRVYGREMARKIKNWEKLLATTPQKCPNAKLALCEEESKQRRKLQ QRMIEIRKDLKTLPDQNFFFNEFQFKKNQLIQMGYIREDELLPRGECACHIYVQELLV TELIFSGIMETLDDDQLNALLSAIDFEARKNDYFQRLPVLDWTPLQDLVRYIQSVCGP ESVRYDPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPA LLQRLKLCMDKLDRDEAAVLAL" gene 3292158..3292472 /locus_tag="Dhaf_3074" /db_xref="GeneID:7260085" CDS 3292158..3292472 /locus_tag="Dhaf_3074" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459533.1" /db_xref="GI:219669098" /db_xref="GeneID:7260085" /translation="MKDQDVFRGTPTPAPNGQNPDRDRIADTTSEMTSAAMAGQDSAA LGYPMSMPGAESNTAESSSARAAVTDNGEFEPVQTARDMSIYRDTGEPGSDYELPSDT IS" gene 3292702..3293379 /locus_tag="Dhaf_3075" /db_xref="GeneID:7260086" CDS 3292702..3293379 /locus_tag="Dhaf_3075" /inference="protein motif:PFAM:PF04012" /note="PFAM: PspA/IM30 family protein; KEGG: cpy:Cphy_3672 phage shock protein A, PspA" /codon_start=1 /transl_table=11 /product="phage shock protein A, PspA" /protein_id="YP_002459534.1" /db_xref="GI:219669099" /db_xref="InterPro:IPR007157" /db_xref="GeneID:7260086" /translation="MSILGRFKEIMSSNINALLDKVEDPEKMIEQCLRNLNSDLGKVK SETATIMAEEQRAQRELDECHADIEKMQSYALKALEAGNEADARKFLTHKASLQAKLT GLQEACNLAQANAAHMREMHDKLVGDIGELESRKEMIKGKLAAAKTQDRMNKMMSSVS GANDSMASFERYEALADKALDQAKAMAELNKSSQSSIKDLAAKYDAEPDTSIDDELAA LKASLNK" gene 3293499..3294560 /locus_tag="Dhaf_3076" /db_xref="GeneID:7260087" CDS 3293499..3294560 /locus_tag="Dhaf_3076" /inference="similar to AA sequence:KEGG:BLi00641" /note="KEGG: bld:BLi00641 YdjG" /codon_start=1 /transl_table=11 /product="YdjG" /protein_id="YP_002459535.1" /db_xref="GI:219669100" /db_xref="GeneID:7260087" /translation="MVVHYKCPNCGADMAFNSTSGMLHCDSCGTDQSIEEIPKQGDAQ NPGTAASKGHIPWAEGAVNQYHCQNCGAVLITDKDTVATSCSFCNAAVVLNDRLQGSF APAKVIPFAIDRQQAQEAFKKWCRKGLLTPKELMSANRIKGITGIYVPFWLYDLNGWG EATAECTKVRAYSDADYNYTETSFFHVHRTVDLNYLQVPVDASQKMDDALMDKLEPYD YGSLKDFMMPYLAGFLAEKYDYDNRELFPRVRARVEGYVSDYINSTISGYTTTNFISK NININEKKADYALFPVWMVRYDYGQKEYVFAMNGQTGKIVGKPPLSPGKIAAWFAGIS TTSFVIIKIIAMLLGGGVL" gene 3294560..3295450 /locus_tag="Dhaf_3077" /db_xref="GeneID:7260088" CDS 3294560..3295450 /locus_tag="Dhaf_3077" /inference="protein motif:PFAM:PF04536" /note="PFAM: protein of unknown function DUF477; KEGG: cpy:Cphy_3674 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF477" /protein_id="YP_002459536.1" /db_xref="GI:219669101" /db_xref="InterPro:IPR007621" /db_xref="GeneID:7260088" /translation="MGKRAAKLALLLVIVFYAVYPGSVTAALQDQHIFDDAQLFTEDE RASLEEACRQYGSESDIAIVIVTASDLGGKTPQLYLEEFYDAKVADGDGVYPSAALLL LNMTPGARSVEIQGYGIAQTYLNNQRIEYILDDITPQLAEGKYFDAMLGYTEQAAYYM RQEVQSSPGVNPGGSPHYNPPQGNGAGYNKQEDSIFFNTFFQLGLAAVIGAAAVSIMA ARSGGRVTTNNRTYLDPAHSRLLDHSDQYIRTTVTKVRRPKKDEHNNSGFGGGRGGFG GGGGGVSPGGHSHSGGGRSF" sig_peptide 3294560..3294640 /locus_tag="Dhaf_3077" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 27" gene 3295497..3296489 /locus_tag="Dhaf_3078" /db_xref="GeneID:7260089" CDS 3295497..3296489 /locus_tag="Dhaf_3078" /inference="similar to AA sequence:KEGG:RBAM_006610" /note="KEGG: bay:RBAM_006610 YdjI" /codon_start=1 /transl_table=11 /product="YdjI" /protein_id="YP_002459537.1" /db_xref="GI:219669102" /db_xref="GeneID:7260089" /translation="MGFFSGQFSNVVEWEEFREDMIFWKWHNREIKRGSKLIIRPGQD AIFLFNGRIEGIFKDEGDYDIESQIIPFLSTLQGFKFGFNSGMRAEVLFVNTKEFTAK WGTKSAINIPTPQLPGGIPIRANGTFTFKVNDYVKLIDKIAGVKDSFLVEDVRLRIMA LLDQLLMKWIVQEGRDMFNLQSNSFAIADGLKTDLDMQIYDMGITVSQLTIMSFTYPE EIQQMIAKAASHTMIGDMGRYQQVSVLDGIAGGKGQGGSTAADMAGMAIGMQMANEMI KGVTSPQREQTQGRGSHAPQGGSEPGLIKPNFCPNCGQKTDGANFCSNCGQKLV" gene 3296650..3297717 /locus_tag="Dhaf_3079" /db_xref="GeneID:7260090" CDS 3296650..3297717 /locus_tag="Dhaf_3079" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aeh:Mlg_1466 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459538.1" /db_xref="GI:219669103" /db_xref="GeneID:7260090" /translation="MRVWLTLILALFLCAGCGNPQIGNTAVLSQADQNAALEVVKQHL EGMKNDFGVISLEINSIQAIRNEQHIQTILSGEAAVMMGLTEEKIALVDAYLNVQYDG TKVPYNSGENQYIGFTLVRENKEKPWIIANSGQGMGGVALVDFENPYPEKSAELYVWK NKELTSNDHTYFTVFDNDTNGLNKNRPESEIYNLDAASDSIDFINLRLAGIPNLTCLA VYQMNTTDFTKEEMADILGYLVLNADHHRITLGLWEPDGLNSVNGSHIINSLQRKGFN GKLKDVTDDLIQHPELIPYDGVLGGTMGFYFPEDIHVLTDKWVLAYFEDGHISGYMLL EYTINNDSISWRVMESYLNGE" sig_peptide 3296650..3296721 /locus_tag="Dhaf_3079" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.946) with cleavage site probability 0.397 at residue 24" gene complement(3297984..3298148) /locus_tag="Dhaf_3080" /db_xref="GeneID:7260091" CDS complement(3297984..3298148) /locus_tag="Dhaf_3080" /inference="protein motif:PFAM:PF00301" /note="PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tdn:Suden_1582 rubredoxin-type Fe(Cys)4 protein" /codon_start=1 /transl_table=11 /product="Rubredoxin-type Fe(Cys)4 protein" /protein_id="YP_002459539.1" /db_xref="GI:219669104" /db_xref="InterPro:IPR001052" /db_xref="InterPro:IPR004039" /db_xref="GeneID:7260091" /translation="MQKYVCTICQYVYDPEVGDPDSGVAPGTAFEDIPEDWVCPTCGV SKDQFEVYED" gene complement(3298261..3298713) /locus_tag="Dhaf_3081" /db_xref="GeneID:7260092" CDS complement(3298261..3298713) /locus_tag="Dhaf_3081" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459540.1" /db_xref="GI:219669105" /db_xref="GeneID:7260092" /translation="MGVFVQQVPSRVLNTAESNHVPKHIRGVLEEFLRRYSELQRVRH REVACLMAVISFGFLSLWGMLFPKYPAISFWLNSLLLVGFILTLVQYVKVRRVSQHVY INVHILYHHLLGKLEVGFCEHESPCQCAEIFRKYMWNRYGISFYGNSI" gene complement(3298733..3299428) /locus_tag="Dhaf_3082" /db_xref="GeneID:7260093" CDS complement(3298733..3299428) /locus_tag="Dhaf_3082" /inference="protein motif:PFAM:PF00702" /note="PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aoe:Clos_0662 hydrolase" /codon_start=1 /transl_table=11 /product="Haloacid dehalogenase domain protein hydrolase" /protein_id="YP_002459541.1" /db_xref="GI:219669106" /db_xref="InterPro:IPR005834" /db_xref="GeneID:7260093" /translation="MIKAILFDLDGTLTLMDQEEFMKNYIGLLAPRFKQYISPDKFAK QLNRSTEVMIKQPQEGKTNLQTFFADFTKATGLTYHTLWPVFEAFYTTDFPALRLLVK LNPHGKEAVETALQNGYTVAIAANPVMPLIAIEERIRWAELSPQIFSVIPSIESFHHC KPHTGFYAELAEHLGLQPSECLMVGNHPVEDVAAQEIGMQTFYVGEPVEGIQTTYQGD ISDLTRKIREGSL" gene complement(3299579..3301732) /locus_tag="Dhaf_3083" /db_xref="GeneID:7260094" CDS complement(3299579..3301732) /locus_tag="Dhaf_3083" /inference="protein motif:PFAM:PF02589" /note="PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: hmo:HM1_0363 4fe-4S ferredoxin, iron-sulfur binding protein, putative" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF162" /protein_id="YP_002459542.1" /db_xref="GI:219669107" /db_xref="InterPro:IPR003741" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260094" /translation="MANAHFKQEIENALENDILRGALGRFGDVYGKNREQAYQGYDFA ALREKVVEVKSYAAEHLDEMIEQFEKAATARGAKVFHAATGDDAKQYIIELAKQQKVK NIVKSKSMASEEIHLNAALLKEGFDVQETDLGEWIVQLAGQRPSHMVMPAIHMTKEQV ADTFNNNLSYTSDPVIAKLVKTARQEMRKKFVEADMGISGANIAVAETGTLMMMTNEG NARLTATWPRVHVFLVGLEKFVPNFEDAGYILQTLPRNGTAQQLTSYVTMITGPNPTY YPDGSIEDKEFHIILMDNGRRKMYADEQFKQVFQCIRCAACLNVCPAFQLVGGHVYGH IYTGGIGTILTAFLNSEKDAENPQNLCLQCGKCTEVCAGKLDIPGMILEIRNRIGDQK GLPMTPKFILDVVSNRRLFHSLLRVASKAQLPFSKGQPTIRHLPFFLSGLTEKRSLPT IADVPFRDVIKKMNQDVKNSKGTIAFFGGCLVDFVYPKIGEGVVRVLNEKGYKVTFPE GQSCCGAPASYMGDRQNARKSAIMNIEAMDAEKVDYVVSACPTCTHALIDSFRELLAD DPAMLKRAGELSRKSMDFAKLLTILGGLEEGGDGVPLKVTYHDSCHLRRKMGVIEEPR NILSNIKGVDLVEMNESDRCCGFAGSYSIKFPEMSGPILERKLRNIEATGADVVAVDC PGCLMQINGGLDQTDLKVKVKHTAELLLEKRQKQK" gene complement(3301725..3302300) /locus_tag="Dhaf_3084" /db_xref="GeneID:7260095" CDS complement(3301725..3302300) /locus_tag="Dhaf_3084" /inference="protein motif:PFAM:PF02589" /note="PFAM: protein of unknown function DUF162; KEGG: drm:Dred_0689 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF162" /protein_id="YP_002459543.1" /db_xref="GI:219669108" /db_xref="InterPro:IPR003741" /db_xref="GeneID:7260095" /translation="MEDLNHLYERFQTKLQAVSGESHRVKTLKEAEELIAQIMKEKGI ESVAMVNSPMAEAMNLPEKLSAHGVTVYMERYPEVTPTVGAGITEVKWAVAELGTLIQ YAEDVNERLCSSFTPIHIALVQTSTLLPNLMTALATVHNEPRIPGFVGFITGPSRTSD IERVLTIGVHGPEQLVAVFVDEQAGEGVVNG" gene complement(3302515..3303771) /locus_tag="Dhaf_3085" /db_xref="GeneID:7260096" CDS complement(3302515..3303771) /locus_tag="Dhaf_3085" /EC_number="1.1.1.40" /inference="protein motif:PRIAM:1.1.1.40" /note="PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: bha:BH3168 malic enzyme (malate dehydrogenase)" /codon_start=1 /transl_table=11 /product="Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))" /protein_id="YP_002459544.1" /db_xref="GI:219669109" /db_xref="InterPro:IPR012301" /db_xref="InterPro:IPR012302" /db_xref="InterPro:IPR015884" /db_xref="GeneID:7260096" /translation="MSRIKNLREEALEFHKVQPGKLEVRVTVPAQDRDDLTLAYSPGV AEPVKEIAADLENLDIYTNHANYVSIVSNGTAILGLGDLGAAASMPVMEGKSLLFKAF GDVDAFPLCVNTTDVDKIVEIVELTSPTFGGVNLEDIKAPECFEIEEKLKARGIFKGP IFHDDQHGTAVVTLAGLVNALKVVGKKIEDIKVVANGAGAAGIAIIKLLMSMGLKNVI MCDTKGAIYEGRTVGMNPWKEEIAKATNPEKFSGDLAGALVGADAFIGISAANVLNED MIRSMAKDPIVFCQANPIPEIWPIERAFEAGAKVISTGRSDVINQINNVLAFPGMFRG AIDVRATDINDAMKVAAAYAIAGIVKDEELSADYIIPSTFNPEVAPAVAAAVAKAAID SGIARRPMDPQEVADGLKKRLANQYK" gene complement(3303956..3304843) /locus_tag="Dhaf_3086" /db_xref="GeneID:7260097" CDS complement(3303956..3304843) /locus_tag="Dhaf_3086" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="PFAM: HpcH/HpaI aldolase; KEGG: mta:Moth_0400 citrate lyase" /codon_start=1 /transl_table=11 /product="Citryl-CoA lyase" /protein_id="YP_002459545.1" /db_xref="GI:219669110" /db_xref="InterPro:IPR005000" /db_xref="GeneID:7260097" /translation="MAVMRSVMYIPGNNPKMVAKAPEIPADIITFDLEDAVPPAEKET ARQIVRENLEYGAKGGAQVFVRINNWETGLTNDDLEAIVWPGLNGVTLAKTGCAADVQ RLEWKLEELEMRRGIPVGTVKISMLLETAKGIAHAEECCLASKRNVNAIFGAVDYCRD MRVKITNEAVEQQYGRAKVGVACRAAGIVAIDAPFVDYANIPAFEKNVAEGKQMGYEG RMIIHPGQVEPSNRMYAPDPADVKWANDVVKVFEEEGLAKGKAAVSLNGKMVDTPVYL NAKDILASQAEIDAKTAGK" gene complement(3305081..3305977) /locus_tag="Dhaf_3087" /db_xref="GeneID:7260098" CDS complement(3305081..3305977) /locus_tag="Dhaf_3087" /inference="protein motif:PFAM:PF02629" /note="PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mta:Moth_0399 succinyl-CoA synthetase (ADP-forming) alpha subunit" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_002459546.1" /db_xref="GI:219669111" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR005810" /db_xref="InterPro:IPR005811" /db_xref="GeneID:7260098" /translation="MGILINKETKVVVQGITGREGSVRTKYMKDYGTNLIGGTSPGKM GQEVHGVPVFNTVKEIVREQGDIDFSVIFVPGSALKTAVMEAADAGVKNIIPCVEGTP IHDIMEMIAYAKGKGSRLIGPGSIGILTPGEAVVGWLGGNVEWANKFFQKGHIGVFSR SGGQSGTIPWVLREGGFGVSTVIHTGTEPVLGTSMADLLPFFEEDPDTHGVAVYAEIG GTQEEECAEVIAAGKFTKPFVIYVAGAWAPEGQRFSHASNIVERGRGSAKSKMEAITK AGGFVAERPTDIPLILKEKLGK" gene complement(3306057..3306344) /locus_tag="Dhaf_3088" /db_xref="GeneID:7260099" CDS complement(3306057..3306344) /locus_tag="Dhaf_3088" /inference="similar to AA sequence:KEGG:Moth_0398" /note="KEGG: mta:Moth_0398 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459547.1" /db_xref="GI:219669112" /db_xref="InterPro:IPR001450" /db_xref="GeneID:7260099" /translation="MLEFAEKSCKITIDTSKCDACETKACADACKKYARGLLGIDDQG RASVAHRTEEEVLRLGTECLACEFACKFRGKDAISIEVPVAGLDAYLAKRA" gene complement(3306354..3307631) /locus_tag="Dhaf_3089" /db_xref="GeneID:7260100" CDS complement(3306354..3307631) /locus_tag="Dhaf_3089" /EC_number="6.2.1.5" /inference="protein motif:PRIAM:6.2.1.5" /note="PFAM: ATP-grasp domain protein; KEGG: mta:Moth_0397 succinyl-CoA synthetase (ADP-forming) beta subunit" /codon_start=1 /transl_table=11 /product="Succinate--CoA ligase (ADP-forming)" /protein_id="YP_002459548.1" /db_xref="GI:219669113" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR013650" /db_xref="GeneID:7260100" /translation="MARFLEYQGKEWLAKAGMPVPKGRPASTPEEAREAAEWIGGPVA VKGQVQAGGRGKAGIVKLVNTPDEAAAAAAEILSKTVKGLPVRKVLVEEKLDIKKEFY CSFVVNGAKEARSPMLMFSVEGGMDIESVPEDKLLKINVDPINGLQTYDAVDLAAKAG IAPEELTKFAKFLTKLSQTYKKYDCMTLEINPFVMTGNGNLICADCKMEIDNSSVGRH PEFGFDIARDLPGEPTELDYIGWSIEETDARGTGFLMNMGYDEVSPGYVGYHPIGGGS AMMGLDALNQVGLKPANYADTSGNPVASKIYRVAKSVLSQPNIDGYLLGGFMMANQEQ WHHAHAIVKVLREILPTQKPGLPCVLLLCGNREDESLEILKTGLADLMTSDGPGKRIE IYGKEYVTDTKFIGERLLALSKDYRAEKEAQGK" gene 3308134..3308892 /locus_tag="Dhaf_3090" /db_xref="GeneID:7260101" CDS 3308134..3308892 /locus_tag="Dhaf_3090" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459549.1" /db_xref="GI:219669114" /db_xref="GeneID:7260101" /translation="MRQIQYDLEIIYVYKLYYFFSLLIFICPTSLILGWRFGQMLGLL IFILGFLLAYFLMMHKKSFPTPDKKITARKMAKEITQDSTPLAISHFSSQLYFYFNEK RQAIALLEKYQNTHDPLLCATLADILLREGRPRHALRIVHDNPHHTSDPLLLCVLGHI LRQMNEWQAAIRIYELSLALSKKSGFPCNGANRFTQFLLTLSYTATIHHSLGDCYLIL KNYSQAKKHYLLGNIRIFDVSLWRTGKVPTTHTA" gene 3309075..3309293 /locus_tag="Dhaf_3091" /db_xref="GeneID:7260102" CDS 3309075..3309293 /locus_tag="Dhaf_3091" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459550.1" /db_xref="GI:219669115" /db_xref="GeneID:7260102" /translation="MLSSHEDALEFIREFESSCREVLIAQGTSEHDLATAYLELQWKF LRMILDDSGTLSHRSARGICHSKSSSIA" gene complement(3309294..3309746) /locus_tag="Dhaf_3092" /db_xref="GeneID:7260103" CDS complement(3309294..3309746) /locus_tag="Dhaf_3092" /inference="protein motif:PFAM:PF00583" /note="catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_002459551.1" /db_xref="GI:219669116" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260103" /translation="MNLRRAKLPDVEAMMSLVNHFADQGLMLPRSRNSLYEGLREFLV VEEQDRIIGIGALHIIWDDLAEIRTLAVLEEYQGQGVGRSLVNALLADARTILCPRVF TLTYQPGFFERCGFIMINKEDMPHKVWKDCIHCVKFPNCDENAMMLNL" gene complement(3309938..3311173) /locus_tag="Dhaf_3093" /db_xref="GeneID:7260104" CDS complement(3309938..3311173) /locus_tag="Dhaf_3093" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459552.1" /db_xref="GI:219669117" /db_xref="GeneID:7260104" /translation="MNNWLEIWEQHPDVFIAQNWQECPAEKRKDLRLPQQYSYFVGGE TALRVGIVASRILPKEEEFLLAGMLWANRLSNGARTVIYFIAPDFSPFLLHALAKMGG LINAKAVYWRERLSPSLYLIPEAPSGGQKRIAVGERRPNWLKWRQELNPVAQHQLFVV KGFFDKLAQRGVRCELKPLTISYLWGNIEIAEIKRKGKKFELTTKLKGLKHDEKAQSL LRQGWVDASGELNSEFCTAILTILDDLEEKERKGQLKPKDQLSLWLYQGGGILSSLWG SPKDWPWLPKDRSESWIADLGQWHYFEGNGQISVICPILDKPLTQASQAILLSSVLEK STLLHLDKTKANTAWDMQIHWLTLKDFEEELRLWLSWLKYPERYQVWILPNDWQAEGL NELVCRSAPYRERIIDEYS" gene complement(3311250..3312308) /locus_tag="Dhaf_3094" /db_xref="GeneID:7260105" CDS complement(3311250..3312308) /locus_tag="Dhaf_3094" /inference="protein motif:PFAM:PF03576" /note="PFAM: peptidase S58 DmpA; KEGG: pho:PH0078 D-aminopeptidase" /codon_start=1 /transl_table=11 /product="peptidase S58 DmpA" /protein_id="YP_002459553.1" /db_xref="GI:219669118" /db_xref="InterPro:IPR005321" /db_xref="GeneID:7260105" /translation="MERRSARSCGLWMGELAPGLHNDITDVPGVLVGHVSLIKGYGPL IPGVGPVRTGITAIRPHPGNIYREPCRAGIHVMNGFGKSLGVPYIQETGLLNSPIFLT NTLSVYDAAQGMLTYLLQENPEIGHDARTPNLVVFECDDSYLNDIRGRHVKPWDGILA LNRAAAGPLAQGCVGAGVGMCLFQLKGGIGSASRIVPSQGKDYRVGMLALTNFGHLED MLINGVPIGLMMKRANLQEMLCQVPGSLILVGMTDAPLSCRQLHMLAARAPMGLGRTG GISRMGSGEFCLMVSNTGLEFEAPLSDWELDPFFKAVVEITAESIWNSLFYATSMVGR DWHLCQALPIAEVLSWMG" gene complement(3312356..3312934) /locus_tag="Dhaf_3095" /db_xref="GeneID:7260106" CDS complement(3312356..3312934) /locus_tag="Dhaf_3095" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: amt:Amet_1913 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002459554.1" /db_xref="GI:219669119" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7260106" /translation="MSELSRRERKKLETYTRLYECAMELFRQQGYEQTSVEQITQLAD VGKGTFYNYFQSKEAVVLEYSRRNYQELIASGREAGYSLQERLAHVLRNWSQFMIRER ELAWVALKNREEAELDKGLHYGIIGIISHGQRIGEINKRYDPVFLAESLQGMVLQHFL HWFVTGEGDLEKEMEDVLNLFFEGLSERKLRA" gene 3313271..3313756 /locus_tag="Dhaf_3096" /db_xref="GeneID:7260107" CDS 3313271..3313756 /locus_tag="Dhaf_3096" /inference="similar to AA sequence:KEGG:Caur_3227" /note="KEGG: cau:Caur_3227 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459555.1" /db_xref="GI:219669120" /db_xref="GeneID:7260107" /translation="MFYRIHQFWQAIHPIITEDELAWVISLLPAPSLALFQGQPLPEQ RHALDVAQDLWSSGIRDSHLLIAALLHDCGKTRYPLQLWERVAIVLLQKAPRKIWHTL SRSSLPLAASLQAAEAHPLWGAEMASHLGLDPRIVELIREHHTPHSQEGYLLYQADNR H" gene complement(3313828..3314115) /locus_tag="Dhaf_3097" /db_xref="GeneID:7260108" CDS complement(3313828..3314115) /locus_tag="Dhaf_3097" /inference="similar to AA sequence:KEGG:PTH_1309" /note="KEGG: pth:PTH_1309 translation initiation factor 2B subunit" /codon_start=1 /transl_table=11 /product="translation initiation factor 2B subunit" /protein_id="YP_002459556.1" /db_xref="GI:219669121" /db_xref="GeneID:7260108" /translation="MEIHEEVKNLREELRAAKGRIGELEQRVEHLRVSRRVLMNLLEK VEREKVALIHKLEKENIRLQRDNTRFAKWIFSKNREIVQLQEKIEEYKEKA" gene complement(3314173..3315339) /locus_tag="Dhaf_3098" /db_xref="GeneID:7260109" CDS complement(3314173..3315339) /locus_tag="Dhaf_3098" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: hmo:HM1_2384 aspartate aminotransferase" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_002459557.1" /db_xref="GI:219669122" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7260109" /translation="MKARRLSSLGASVFTEMDDLRKELEKAGKQLINLSIGSPDRSPS AEIRKVLAEGVLDGGSYGYTLTRGTESFRSGCARWYKERFGVNLDPEKEVLPLMGSQD GLAHIFLALCDPGDVALIPDPGYPIYTAGLVLAGGEKVALPLREENGFLPDLSAIEDE VAQQAKIMFLNYPNNPTAAVAPLSFFEEVVDFARRNRIVVCHDAAYSELAFDGYRPVS FLQVPGAKEVGIEFHSVSKTYNLAGVRLGFAVGNGEIIGALAELKSNIDYGVFEPALQ AGAYALSASQENVEQNRRAYQERRDIWVKGCAQAGWSMPSPRGSMFIWAPVPTAQDSR SFAFALAREAGVIVVPGVAFGEYGEGYVRIGMVQDQEVLQEAVRRVQEFLAAQG" gene complement(3315376..3316236) /locus_tag="Dhaf_3099" /db_xref="GeneID:7260110" CDS complement(3315376..3316236) /locus_tag="Dhaf_3099" /inference="protein motif:PFAM:PF02811" /note="PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pth:PTH_1307 metal-dependent phosphoesterases" /codon_start=1 /transl_table=11 /product="PHP domain protein" /protein_id="YP_002459558.1" /db_xref="GI:219669123" /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="GeneID:7260110" /translation="MPEVKLRYPEADLHCHTSASDGLLTPWELVKQAAELGLKAVGIT DHDTLSGWEKASQAGKHFNVDILRGVELNTEWAGVEVHILGYEMNPQGTILEDKLSEL REARFKRVYTIIEKLQDLGIPIQKAEVERITKGESVGRPHIAQVLVDKGIVNSIAEAF DRYIGTGGPAYVPRLKITPEEGIVLIRKAGGVAVLAHPGIYKLEKGIEQWVKAGLQGV EVSHSEHTLEDEKKYRAIAKEYGLLMTGGSDFHGEKRKPGVRLGGWGTTYGVVEEIRN LANLACSHHI" gene complement(3316270..3317217) /locus_tag="Dhaf_3100" /db_xref="GeneID:7260111" CDS complement(3316270..3317217) /locus_tag="Dhaf_3100" /EC_number="3.4.13.19" /inference="protein motif:PRIAM:3.4.13.19" /note="PFAM: peptidase M19 renal dipeptidase; KEGG: tte:TTE2129 Zn-dependent dipeptidase" /codon_start=1 /transl_table=11 /product="Membrane dipeptidase" /protein_id="YP_002459559.1" /db_xref="GI:219669124" /db_xref="InterPro:IPR000180" /db_xref="InterPro:IPR008257" /db_xref="GeneID:7260111" /translation="MKDVWVIDGHCDSILDFLEGKRSLTTPLEGGHWDIQRAKEGKVM LQFMAAFIESQYKPERGTLRGLELIHAVHRFIQINGESVVLVRQAEDLRRLAPSQVGC LLSIEGGEILGSSLFLLDIIYELGVRALGLTWNQRNAIADGAGELTQSALTQFGEKVI QRMNELGMLIDVSHLNEAGFWHVLKLSSQPILASHSCAYALCPHPRNLTDEQLKALAQ NGGVVGVNFYPGFLTQEPKASLQDVVRHIQYIAEVAGVDAIGLGSDFDGIDSTPTGLE GADKYGDLAEALHLAGFNDEEIEKIMYKNFMRLLSTVLK" gene complement(3317324..3317584) /locus_tag="Dhaf_3101" /db_xref="GeneID:7260112" CDS complement(3317324..3317584) /locus_tag="Dhaf_3101" /inference="protein motif:PFAM:PF04232" /note="PFAM: Stage V sporulation protein S; KEGG: bay:RBAM_016820 hypothetical protein" /codon_start=1 /transl_table=11 /product="Stage V sporulation protein S" /protein_id="YP_002459560.1" /db_xref="GI:219669125" /db_xref="InterPro:IPR007347" /db_xref="GeneID:7260112" /translation="MDVLKVSAKSSPNSVAGALAGVLRERGGAELQAIGAGALNQAVK AVAIARGFVAPSGVDLVCIPAFTDIQIDGEERTAIKLIVEPR" gene complement(3317719..3318498) /locus_tag="Dhaf_3102" /db_xref="GeneID:7260113" CDS complement(3317719..3318498) /locus_tag="Dhaf_3102" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: dau:Daud_1062 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_002459561.1" /db_xref="GI:219669126" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR005235" /db_xref="GeneID:7260113" /translation="MNILFIGDIVGNPGREAIKVLLKPLIKEYGIDLTIANGENAAGG KGLTKEVAEELYDDGIEFITMGNHVWDQRSIMKFIDQEARLIRPANYPVGAPGKGYGY IRTKGKKVGVLNLSGRVFLNSLEDPFSGAIRWINEMRQETPVIIVDFHAEATSEKVAL GWFLDGKVSAVLGTHTHIQTADARLLHQGTAYITDVGMTGPRDSVLGVKKETIINRFL TQLPAKFELAAGPIQLNAVVLDVDETTGKARSIAPIQRVKE" gene complement(3318584..3319096) /locus_tag="Dhaf_3103" /db_xref="GeneID:7260114" CDS complement(3318584..3319096) /locus_tag="Dhaf_3103" /inference="similar to AA sequence:KEGG:Moth_1082" /note="KEGG: mta:Moth_1082 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459562.1" /db_xref="GI:219669127" /db_xref="GeneID:7260114" /translation="MGRLNLHYKDGGCAPDGVGLLISILIRYPEVCSVRYQQPEHALT FRFTVSGPEQGEKFMDTLQEALKAYHRLEGHSMRICRIEHKLESGVTLVTITRDVESM NEREIGLIVDLVRNIAQNIIYDDTEIPEEEQIFQEEVIGQILQSFRDCRLEKGFIAVR EEGRVLVYNS" gene complement(3319286..3320836) /locus_tag="Dhaf_3104" /db_xref="GeneID:7260115" CDS complement(3319286..3320836) /locus_tag="Dhaf_3104" /inference="protein motif:TFAM:TIGR03319" /note="protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP" /codon_start=1 /transl_table=11 /product="phosphodiesterase" /protein_id="YP_002459563.1" /db_xref="GI:219669128" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="InterPro:IPR017705" /db_xref="GeneID:7260115" /translation="MELTELIFIVVAVVVSLFVGGFIGWLIRKSAAEKLIGSAEEEAK RVIDNAQGAAEAKRREAVIAAKEEVMHIRNEVEKESRERRNEIQRMERRVIQKEESLD RKMESLERKEDNLHRKEEEVDQLKEVLTQTVAKEKQELERVSGLSTEEAKQILLQSVE EEVRYESAIMIKDIETKAKEEAEKRAKNIISLAIQRCAADHVAESTVSVVALPSDEMK GRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREVARVALEKLIADGRIH PARIEEMVEKSQKEVDQRIREEGEQATFETGVHGLHPEIIRLLGRLKFRTSYGQNVLK HSMEVSHLAGLMAAELGVDVQLAKRAGLLHDLGKAVDHDTEGTHVQIGVDLAKKYKES WEVIHAIEAHHGDVEAKTIEAVLVAAADAVSAARPGARRETLESYIKRLQKLEEIADT YDGVEKSYAIQAGREIRIIVRPDKIDDVLAPKVAREISKRIEDELEYPGQIKVVVIRE TRAVDYAK" gene complement(3321189..3321683) /locus_tag="Dhaf_3105" /db_xref="GeneID:7260116" CDS complement(3321189..3321683) /locus_tag="Dhaf_3105" /inference="protein motif:PFAM:PF02631" /note="PFAM: regulatory protein RecX; KEGG: hmo:HM1_2378 regulatory protein RecX, putative" /codon_start=1 /transl_table=11 /product="regulatory protein RecX" /protein_id="YP_002459564.1" /db_xref="GI:219669129" /db_xref="InterPro:IPR003783" /db_xref="GeneID:7260116" /translation="MKGVLDVALTYLSRRMLTRCELSQRLARKGFPSHEIEAAIERLL EWGYLSDQEYARAYCLSKQTNYSQKRINYDLKGRGIEEGIIEQALRETYLPGQEAELC RKHAQKLWVEESRRWENTYRHKKSYEKIPRELMLRQKVGQKLMQKGYPQEMVFEILEG IAKE" gene complement(3321685..3322725) /locus_tag="Dhaf_3106" /db_xref="GeneID:7260117" CDS complement(3321685..3322725) /locus_tag="Dhaf_3106" /EC_number="3.6.3.8" /inference="protein motif:TFAM:TIGR02012" /note="KEGG: hmo:HM1_2377 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="recA protein" /protein_id="YP_002459565.1" /db_xref="GI:219669130" /db_xref="InterPro:IPR001553" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013765" /db_xref="GeneID:7260117" /translation="MAGNDKLKALDMALSQIEKQFGKGSIMRLGEASAKMAVEVIPTG CLAIDIALGVGGVPRGRVIEIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDP VYAKALGVNIDNLLVSQPDTGEQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEM GDSHVGLHARLMSQALRKLTGAISKSNTCVIFINQIREKVGIMFGNPETTTGGRALKF YASVRLEVRRADTLKQGQDMIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGSMV DVGAELDIINKSGAWYSYKGERLGQGRENVKEFLKKNPEIAAEIEQGIRASIANVSAP VADDVQEEPEDI" gene complement(3322892..3323710) /locus_tag="Dhaf_3107" /db_xref="GeneID:7260118" CDS complement(3322892..3323710) /locus_tag="Dhaf_3107" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459566.1" /db_xref="GI:219669131" /db_xref="GeneID:7260118" /translation="MRIKWLLITILLCSLLLTGCSSQPLQEPEKWAMVEEKVMTFSDG ESVNLWRRGPFGHAAYKLSDETTLLLVQDPAGPANVYVGGVESLNDLSEPAQRAVAAF YEEQGLLYNVPSELEKAYADYLACQDKGTLFHEHYISQDIVPTASNDSIICFLTSVIL PVNGQMAQEVHLGAVFSRETGEVLNNWELFSLPEDEARQRLLDIFNVADSALRTEMQA ALKPEYIILFPDNLDVTFPRGTLPSQAYSYSIGLGYDELQGVIQSWAIPNSDGI" sig_peptide complement(3322892..3322972) /locus_tag="Dhaf_3107" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.483 at residue 27" gene complement(3323746..3324273) /locus_tag="Dhaf_3108" /db_xref="GeneID:7260119" CDS complement(3323746..3324273) /locus_tag="Dhaf_3108" /inference="similar to AA sequence:KEGG:Cphy_2015" /note="KEGG: cpy:Cphy_2015 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459567.1" /db_xref="GI:219669132" /db_xref="GeneID:7260119" /translation="MAEIIKVYKEHLPSLRFIGKCYTNADRVGGFGHKWAEWFQKGWF EALGNLGGAPDIENGYLGLMRCDSSNFENTFEYWIGLFFSSDTSVPSGYDYIDLDDGP IGVCWIKGKEDEGGIYGMHEQCAVRFQESGMGNFKNDHENRAYFFERYNCPRFTEKDE QGNVILDYCVYLADL" gene complement(3324406..3325251) /locus_tag="Dhaf_3109" /db_xref="GeneID:7260120" CDS complement(3324406..3325251) /locus_tag="Dhaf_3109" /inference="protein motif:PFAM:PF03096" /note="PFAM: Ndr family protein; KEGG: cbl:CLK_1587 carboxylesterase" /codon_start=1 /transl_table=11 /product="Ndr family protein" /protein_id="YP_002459568.1" /db_xref="GI:219669133" /db_xref="InterPro:IPR003089" /db_xref="InterPro:IPR004142" /db_xref="GeneID:7260120" /translation="MKNTVAFKTITGRDAVYKAYDAFLGNMGIPHEEVNVDTRFGKAF VIAAGKKDAPVLVLLHGSGINSVMWIKDMEKYSEHYRVYAVDLQGEPGKSDGKQLSFE GSDFDNWLHDVFAGLSVEKASIAGISLGAWLALKFAIANPQMVDKLVLLCPAGVGPQK TSFAYVSLFHMLLWGEKGVERLFRKVNGGKPIPQEIMDYQKLLGNNFNFRREQVPLFS DAELTQLTIPSILFVGQKDVMFHSLKTAQRYRNLVPDAKVIVLREAGHTLIGLVDDIL EFLQN" gene complement(3325248..3326225) /locus_tag="Dhaf_3110" /db_xref="GeneID:7260121" CDS complement(3325248..3326225) /locus_tag="Dhaf_3110" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: ckl:CKL_0580 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002459569.1" /db_xref="GI:219669134" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7260121" /translation="MSLNHVILGLLNREPLTGYEMKKIIQNTPFMYWSGNNNQIYKAF VELLDEGFVTKEVQHQDGSPSKNIYTITGDGQQEFKSWLLSVTDVPVFKKQVLIKLAL ANQLKRGDLETMLASYADRVKMQALLSERELDKCYFAEQELSGRSLFIDLIRENILSF YAGELEWVQKVKECIAGLADERNVATEAVIQKENNEVEPAMNCQVMESRGKRYLYLTS SGSLIQREQDAIDIISLCAEHGTNAVVLDGNTLSDDFVKLRTGLAGAVLQKFVNYNIK AAVAIKGGQNFPVRFQEMASEHSSGNTFRIFTNLEDAVSWLLAQRRKSK" gene complement(3326416..3326769) /locus_tag="Dhaf_3111" /db_xref="GeneID:7260122" CDS complement(3326416..3326769) /locus_tag="Dhaf_3111" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459570.1" /db_xref="GI:219669135" /db_xref="GeneID:7260122" /translation="MIAVLVFSLKSGMDAPEKLAETVLMRTYGATKQDYEALTHALSQ SQSREDMQILFDYVHTAYGEQLTAEGYEICIANRMISKASKVAYDENSDLKVSAIELQ PTDALEGRRHCTPLK" gene complement(3326998..3327624) /locus_tag="Dhaf_3112" /db_xref="GeneID:7260123" CDS complement(3326998..3327624) /locus_tag="Dhaf_3112" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: cpy:Cphy_1967 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002459571.1" /db_xref="GI:219669136" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7260123" /translation="MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPEL DKLVKMSEVFSISLDELIRGEKTEKMQRETQSPDISAPPNGLPPRKIVGLFILGFGLI VFLFLSFLGDLLSALFLSSPLFVCALICLTVNKHTVLWCGWALYGLIYAYLRYATGIR LWWIFQGWLYRGGLEIHAAIAWLQVLGLVALIISTGRLFYKSRKNSPD" gene complement(3327819..3328871) /locus_tag="Dhaf_3113" /db_xref="GeneID:7260124" CDS complement(3327819..3328871) /locus_tag="Dhaf_3113" /inference="protein motif:PFAM:PF08241" /note="PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: fma:FMG_0149 putative methyltransferase" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002459572.1" /db_xref="GI:219669137" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7260124" /translation="MNEVIENVKEYYGKILHSTADLQSKACCCSPDSMPKEVKKALIF IADEVINRYYGCGSPLPPLLEGMTVLDLGCGSGRDVYVAAQLVGEHGRVIGVDMTQEQ LDVAKKYEDEQRQRFGYAKSNVKFLSGYIEDLRAAGISDSSVDIVISNCVVNLSPDKE KVFAEIWRVLKPGGELYFSDVFADRRIPEYLAADPVLRGECIGGALYYEDFRRIMQRV GFTDFRYKSIRNIDLDNEAIIEKVGFANFTERTVRAFKLDDLEDICEDYGQIAVYNGS IASSPHFFDLDDHHRFFTGKPLLVCGNTAAMLAKTRFASAFRVIGNRSTHYGVFGVCG GKSETNCFDTGSSCGC" gene complement(3328868..3329200) /locus_tag="Dhaf_3114" /db_xref="GeneID:7260125" CDS complement(3328868..3329200) /locus_tag="Dhaf_3114" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: pmo:Pmob_0438 transcriptional regulator, ArsR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002459573.1" /db_xref="GI:219669138" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7260125" /translation="MKANHLESAKVFKAFCDETRLAILEMLQSGEKCACVLLEKVEVG QSTLSHHMKILLESGVISARKEGKWTYYSISENGRKRALALLHAITETHLLTGETEEN CCEKESVL" gene complement(3329425..3329865) /locus_tag="Dhaf_3115" /db_xref="GeneID:7260126" CDS complement(3329425..3329865) /locus_tag="Dhaf_3115" /inference="protein motif:PFAM:PF06983" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: bce:BC2431 PhnB protein" /codon_start=1 /transl_table=11 /product="3-demethylubiquinone-9 3-methyltransferase" /protein_id="YP_002459574.1" /db_xref="GI:219669139" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR009725" /db_xref="GeneID:7260126" /translation="MEIRTFDFGDGFCFKQKIATFLMFQDGNAEEAMNFYISLFDNSK IVNITRYGANEAGQEGTVMHAVFSLNGQEYMCIDSHVKHEFTFTPAISLYVTCDSKEE IDKVFEKLLEGGQILMPLGSYPFSERFGWVNDKYGVSWQLNFEK" gene complement(3329905..3330309) /locus_tag="Dhaf_3116" /db_xref="GeneID:7260127" CDS complement(3329905..3330309) /locus_tag="Dhaf_3116" /inference="similar to AA sequence:KEGG:Bsph_2515" /note="KEGG: lsp:Bsph_2515 putative cytoplasmic protein" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="YP_002459575.1" /db_xref="GI:219669140" /db_xref="GeneID:7260127" /translation="MSISSKFFLYEKGFSTAFGFECAVMLRAAWEMADMVEVLPFSEG EINEAVASNPAVEHLYVYLLDGSDIRQQFDGLIRTYTGRDRMVLGANEIYLLCHESIR DSKLATSLGKLKVSLTARNWKTISKLYEITRE" gene complement(3330306..3330566) /locus_tag="Dhaf_3117" /db_xref="GeneID:7260128" CDS complement(3330306..3330566) /locus_tag="Dhaf_3117" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: aau:AAur_3550 redox-sensitive transcriptional activator SoxR" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002459576.1" /db_xref="GI:219669141" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7260128" /translation="MLFRDCDLKKASPYVTIGELVRLTGIRYSTLKFYTEEGMLEFEQ AEENLTRRYKRVDTIQRIHYIKNLRAEGKTVPQIKDILNQTK" gene complement(3330695..3332287) /locus_tag="Dhaf_3118" /db_xref="GeneID:7260129" CDS complement(3330695..3332287) /locus_tag="Dhaf_3118" /inference="protein motif:PFAM:PF00270" /note="PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: hmo:HM1_2374 dead/deah box helicase" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_002459577.1" /db_xref="GI:219669142" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR005580" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260129" /translation="MSAERLQSFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDG VDLIGQAQTGTGKTAAFGIPICEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYR HIKPLPIYGGQSIDRQIRALRFGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADE MLDMGFVEDIETILKQVPKEERQVMLFSATMPPEIKKLAQNYMHQPKSVAVSRDELTV PLIEQVFYEARDKIKVDALCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADAL HGDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRI GRTGRAGRKGQAITLVSSREYRQLRLIERLIKTRIIRKELPTLADVSERQAENLKNQL VKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALKFAVEGVEERSEEEDDIAFGNTGAA PGMVRLFMNIGRLQQVRPQDIVRWIADESGIPGNIIGMINIYDKFTFVEIPEQHASRV LSCMHQNMIKGRKVNVEPAKAR" gene complement(3332295..3333542) /locus_tag="Dhaf_3119" /db_xref="GeneID:7260130" CDS complement(3332295..3333542) /locus_tag="Dhaf_3119" /inference="protein motif:TFAM:TIGR00200" /note="TIGRFAM: molybdenum cofactor synthesis domain protein; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: tex:Teth514_1628 competence damage-inducible protein A" /codon_start=1 /transl_table=11 /product="competence/damage-inducible protein CinA" /protein_id="YP_002459578.1" /db_xref="GI:219669143" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR008135" /db_xref="InterPro:IPR008136" /db_xref="InterPro:IPR008284" /db_xref="GeneID:7260130" /translation="MKAEIIATGTEILLGQTLNTSAHYLTGKLSELGIEVDYHTTVGD NPERLKKVILQGIERSDLLMITGGTGPTEDDLSKELIAQIFGLNMVLDPPSHEKIQEF FAMRGSQMPKTEEKQAYFPEGSQILPNHCGTAPGAIVQKNNKTIILLPGPPTEMEPMF KNYVWPFLERIAQEDSARMYVRVVKVVGLGESELEEVLRDFMGRHEPGMTLLCKDSEM HIRLVVRGNADEAAAILAQAESVIHERLGDKVFGTDEDTMLELVSKGLKEHRLTLATA ESCTGGLLGAQLTQEPGSSDFYLGGVISYSNALKEGLLGVSSQTLHHYGAVSAETARE MAAGIRERTQADLGISITGIAGPGGGSQEKPVGLVYIGLATSEGVKANKFQFHGSRDS IRQLTVQAALDWIRRYMLNSERG" gene complement(3333858..3334316) /locus_tag="Dhaf_3120" /db_xref="GeneID:7260131" CDS complement(3333858..3334316) /locus_tag="Dhaf_3120" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459579.1" /db_xref="GI:219669144" /db_xref="GeneID:7260131" /translation="MKKWLIKIPMTLFAAMFFLIISAYFIFPILNDIKAEKLAKEMLN TTPPNNTEIVEAISGCGNTGGTGNHTEVWIGLLVKSGLSKKELLKYYSDLYNYIEVYE TAADGAGYPIIMQFIDDEFKSFENISNHDDYFIIGRTENAVSSSFDLRGH" sig_peptide complement(3333858..3333953) /locus_tag="Dhaf_3120" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.915) with cleavage site probability 0.642 at residue 32" gene complement(3334603..3336084) /locus_tag="Dhaf_3121" /db_xref="GeneID:7260132" CDS complement(3334603..3336084) /locus_tag="Dhaf_3121" /EC_number="3.6.4.3" /inference="protein motif:PRIAM:3.6.4.3" /note="KEGG: pth:PTH_1299 ATP-dependent Zn proteases; PFAM: peptidase M41; AAA ATPase central domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="Microtubule-severing ATPase" /protein_id="YP_002459580.1" /db_xref="GI:219669145" /db_xref="InterPro:IPR000642" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR003960" /db_xref="GeneID:7260132" /translation="MGLAKDIAMGVGVGLFLYLWVSGYNVLPIGLLVLLGVAFWKFMP RSMVGGSEKGVRISGSTVDFEDIGGQNAAKKELQEALDFLLYSERMRELGIRPLKGIL LSGPPGTGKTLLAKAAARYTDSVYLAISGSEFVEMYAGVGAERVRKLFKKARESAKKE KKDRAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLLVEMDGLGNSEQGTQILLIAATN RAEALDPALLRPGRFDRLVKVDLPDKEGRLAILKIHTKNKPLASCVDLEQIAQETYNF SGAHLESVTNEAAVFALRDDAREVNMFHFREAVEKVLLGEKLDRKPTDEELQRVAIHE GGHALLAEFVRPHSVSQISIRSRGNALGYVRHYPKDDLYLYTQAMIEEQIMVALAGAI AEETILGTRSTGAAGDYEQALHMVEKMLASGMSTLGVVDVVKLGADQRQQVTREILAE LEERTCQVILDKKGILERVVQVLKTEEVLNGERLRLLIEEEAA" gene complement(3336126..3336665) /locus_tag="Dhaf_3122" /db_xref="GeneID:7260133" CDS complement(3336126..3336665) /locus_tag="Dhaf_3122" /inference="similar to AA sequence:KEGG:Moth_1076" /note="KEGG: mta:Moth_1076 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459581.1" /db_xref="GI:219669146" /db_xref="GeneID:7260133" /translation="MTKQRITIISLVSMLIFGLLLSGKLLYENKWLEGSLIKESQQIS GVLSAEILDKQGASEMLVNTGQVTNLQTICTQLKTISGTHPIRLVDQRTPELEEVYQQ MQFAIQEGMVMGNFTQMQETLAAQAEQAGVMMNLTMDNEGIYLVLTQGEHQLVSVIER HGQGTFLPSVGKDYTGMNH" sig_peptide complement(3336126..3336197) /locus_tag="Dhaf_3122" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.833) with cleavage site probability 0.495 at residue 24" gene complement(3336992..3337549) /locus_tag="Dhaf_3123" /db_xref="GeneID:7260134" CDS complement(3336992..3337549) /locus_tag="Dhaf_3123" /inference="protein motif:TFAM:TIGR00560" /note="TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: drm:Dred_1925 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase" /protein_id="YP_002459582.1" /db_xref="GI:219669147" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR004570" /db_xref="GeneID:7260134" /translation="MNLPNQLTMARIILIPIFMALLLIQFPKGQPIFPYQDFVAAMIF ILAAATDGLDGYIARKRGQVTVLGKFMDPLADKLLVSAALIALVDLGHVPAWICWIIL AREFAVTGLRAIASADGTVIAASKLGKIKTVSQVVAISLILLHDWPLSLFNLYLGQPL LYVALFFTIVSGVDYLVKSKKLLKK" gene complement(3337546..3338874) /locus_tag="Dhaf_3124" /db_xref="GeneID:7260135" CDS complement(3337546..3338874) /locus_tag="Dhaf_3124" /EC_number="1.3.1.74" /inference="protein motif:TFAM:TIGR01125" /note="KEGG: drm:Dred_1926 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="MiaB-like tRNA modifying enzyme YliG" /protein_id="YP_002459583.1" /db_xref="GI:219669148" /db_xref="InterPro:IPR002792" /db_xref="InterPro:IPR005839" /db_xref="InterPro:IPR005840" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR013848" /db_xref="GeneID:7260135" /translation="MNKKVAVVTLGCPKNQVDSEIMTGHMMTKYQIVNEPEQADIIII NTCTFIESAKAESIDMILQMSQYKEEGQCQTLVATGCLAQRYGDELLAEIPELDGIMG TGNVAEILETLEEAEKSKVRRISAEAPAFIYDETMPRVRLSPKQYAYVKVAEGCDNYC TYCIIPHVRGHFRSRTQESILREVEAMASEGVKEVLLIAQDTTRYGKDRYGEYRLPSL IKEIAGIEGIEWIRLMYCYPELFTDELITVMKETPKVCRYLDLPLQHAHDKVLAEMNR RGTIREAEGLIHKLRQEIPDIRLRTTMITGFPGETEEEFQAVVDFAKKIRFDRLGAFA YSQEESTPAAQREDQVPEEIRQQRRDQLMELQHDIAYEQQQRWVGQTLKVLIEEALPD QRWVGRSEGDAPEIDGVVYVDSPGELEIGDFVLVKITGADSYDLMGEVVQ" gene 3339202..3339795 /locus_tag="Dhaf_3125" /db_xref="GeneID:7260136" CDS 3339202..3339795 /locus_tag="Dhaf_3125" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459584.1" /db_xref="GI:219669149" /db_xref="GeneID:7260136" /translation="MLNDTLSPVDQCGCGDTGYLNSRTLPIALDHGAGKVINVPVYSC GSSMCDEYRIPSAVASRLDELAEEMEAKGILSMAFSWGASQEDTLGYQDSLSQGFIWK FQNRSYEDARVLFVIDGDTLVLQSKLDPTEYYLLKRLEESKEGVFFSFSKFIEEDEEL TYEKYIVLEPSFQKELGVVKMEEVEDMLREEFGEICD" gene complement(3339816..3341744) /locus_tag="Dhaf_3126" /db_xref="GeneID:7260137" CDS complement(3339816..3341744) /locus_tag="Dhaf_3126" /inference="protein motif:PFAM:PF08497" /note="PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_1094 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459585.1" /db_xref="GI:219669150" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR013704" /db_xref="GeneID:7260137" /translation="MSSIKIPQFLPISKQDMKKRGWEELDFLLITGDAYVDHPSFGIA IISRVLEKHGYKVGIIAQPNWRDVKAFQALGRPRLACLVSGGNLDSMVNHYTAAKKRR QKDVYSPGGKAGLRPDHATIVYTNKVREAFPGLPVIIGGIESSLRRFAHYDFWSDKVK RSILLDSQGDLLVFGMGEKAIVEVAHALNDGEPIAEVQGVRGTMVPWKKEIPEGIIQL PAYQDVVGDKRKYAESFWVQYNQQDPYYGKAMYQSHGQVGVIQYPPAYPLTQAEMDGV YALPYVGSYHPVYEEAGGVPAIEEVEFSLVSSRGCYGGCSFCALTFHQGRIIQGRSAE SIVREAEQLTWSPRFKGYIHDVGGPTANFRRPACKAQLKRGACPHKQCLFPAPCAKAD VDHTEYIDLLRRLRNLPKVKKVFVRSGIRYDAVLADKNTTFLRELCEHHVSGQLKVAP EHISEKVLKRMGKPGKKVYERFADEFKTINEDLGKKQYLVPYLMSSHPGSGLREAIEL AEYVRDMGVNPEQVQDFIPTPGSLSTCMYYTGLDPRTMEKVYVPRTMEEKAMQRALIQ YRNPKNYDLVEKALKSAHREDLIGHGPKCLIRPRSQHKKSLGPIGKTSPSSSAPQARD KKRNSVKGKPRVKSRPKG" gene complement(3341798..3342289) /locus_tag="Dhaf_3127" /db_xref="GeneID:7260138" CDS complement(3341798..3342289) /locus_tag="Dhaf_3127" /inference="protein motif:PFAM:PF04461" /note="putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription" /codon_start=1 /transl_table=11 /product="putative nucleotide-binding protein" /protein_id="YP_002459586.1" /db_xref="GI:219669151" /db_xref="InterPro:IPR007551" /db_xref="GeneID:7260138" /translation="MAKDSSFDIVSKVEMQEVINAVHQAQKEIEQRFDFKNSKSSLEL QDEKIILVSDDDFKLRNVIDILESKLVKRQVSLKALEYGKVQPAAGDTVRQEVKLVQG ISQDKGKEINKLIKDSKIKVSSSIQGDQVRVTGKNKDDLQEVIALLRKQDLGIDLQFI NYR" gene complement(3342338..3343141) /locus_tag="Dhaf_3128" /db_xref="GeneID:7260139" CDS complement(3342338..3343141) /locus_tag="Dhaf_3128" /inference="similar to AA sequence:KEGG:Daud_0838" /note="KEGG: dau:Daud_0838 transcriptional regulator, XRE family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002459587.1" /db_xref="GI:219669152" /db_xref="GeneID:7260139" /translation="MAGEGQILRNARVDKGWSLTQAEEVTKIRIRYLEALEEEAYHIL PGDTYTKGFLRTYAKHLGINPEEVLEHYKALGQQQEKPLSAEPAPPLPRRRPQWIKPV LVAVTGVVALVVVIGIASLSKHPGTTIAPEDIVTPLPTTPQEEVVQQPENTPPPDDTP PAQTSPSNPQNVIAQENEGLVAQLVFSQPCWIRVNVDGQFAFEGTFTQGATKELKAKD QIELVTVGNAGGLTVTLNGKTWPSLGAQGQVVNNIILKKDSANQISLLP" gene complement(3343165..3343902) /locus_tag="Dhaf_3129" /db_xref="GeneID:7260140" CDS complement(3343165..3343902) /locus_tag="Dhaf_3129" /inference="similar to AA sequence:KEGG:GK1291" /note="KEGG: gka:GK1291 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459588.1" /db_xref="GI:219669153" /db_xref="GeneID:7260140" /translation="MIQQNKPGLLGAVSTLLGMLEINILTVNGIGEDRRGFLLQYPSP EKVQALQEALQHVDTIEIAAFRPPTIFDRLALRHGRRLDKAESNPPTYRFIREELGLL VDFLGDTLVEGGNQLIGIRGVPRVGKTEAAISACVYANKKWILLSSTIIRQTLRTTLM LDEAEDSVFLIDGMTSTSRGNDAHWELLNRVMELPTPKIIEHPDVFLRDGRIKRDLDF IIEIRNQPQDEIGIDDVAVSFSAFDIS" gene complement(3343886..3344962) /locus_tag="Dhaf_3130" /db_xref="GeneID:7260141" CDS complement(3343886..3344962) /locus_tag="Dhaf_3130" /inference="protein motif:TFAM:TIGR03167" /note="catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA" /codon_start=1 /transl_table=11 /product="tRNA 2-selenouridine synthase" /protein_id="YP_002459589.1" /db_xref="GI:219669154" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR017582" /db_xref="GeneID:7260141" /translation="MVQDITIEELLKIKDIVLLDVRSEGEYEEATIPGALNLPLFSNE ERAMIGTTYVQVSPALAKEQGLAIAGPKLDGLYNQARQWSKGRPVVLFCWRGGMRSKS LATVLGLMGLPVYRLQGGYKAYRHLVHDYFSREFPFKVVVLRGNTGVGKTELLKRLRA DGYPAIDLESLANNRGSVFGSVGLGSGPSQKSFEAALYEELRMLADFPYIIVECESKR IGRINLPTNVYEAMKMGPQILIYDSVQHRVERLIKEYTQYPHADLEIKSALGRLTKNL GHKTIAQYSALLEQGNLEEFTEGMLKYYDALYAYPNQPSHDYDDSISNEDPEKGIKEL EDYLDQWSGILRRTTLFGICDTAK" gene complement(3345032..3347371) /locus_tag="Dhaf_3131" /db_xref="GeneID:7260142" CDS complement(3345032..3347371) /locus_tag="Dhaf_3131" /inference="protein motif:PFAM:PF01580" /note="PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: mta:Moth_1072 cell division FtsK/SpoIIIE" /codon_start=1 /transl_table=11 /product="cell divisionFtsK/SpoIIIE" /protein_id="YP_002459590.1" /db_xref="GI:219669155" /db_xref="InterPro:IPR002543" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7260142" /translation="MTVKKKGFLKDNVRHELIGIVALGLAVLGIVALYSGSNGIVGGK IKEGLTVLAGNGRVWLLLMLGAWGIAYMNRKHINNQWRTVGVLLLWLAFEGLLHFQLP GLSGYTNETILDEGLLGHGGGAIGALLTMALKSSVGISGGYVVLIVTALSGALLVTNR SLIGGLQQVQKAGKESGRWVKNHVEDFIYVIQDTEENPEEVFPEEPLEKRALKKNIKK KETKATTEPLKVLEPELVERPVIIKTLQDLADHGGEEEKPLAETPIIQTVLPFAEEKK QKTNPPGKVTGTPVSRLAQKESGDFQLPNLTLLNKTMKVKNPRINKDLADNVKILEDT LESFGVKIKVTHVTQGPAITRYEAQPAPGVKVSKITNLSDDIALSLAATDVRIEAPVP GKSVVGIEVPNKEIATVHFREVLETPEFQNSLSKLTVVLGKDITGSPIVADLTKMPHL LIAGATGSGKSVCVNTLINSILYKARPDEVKFLLVDPKMVELTNYNGIPHLIAPVVTD PKKAAGALKWIVTEMETRYELFAAAGVRDIVRYNYLRTQEKKEDAPPLPYVVVIIDEL ADLMMVAPGDVEDSICRLAQMARAAGIHLLIATQRPSVDVITGLIKANVPSRIAFAVS SQIDSRTILDMNGAEKLLGRGDMLYYPMGASKPIRVQGCFLADKEVENVVRFLQNQAK PEYQEIPNIELGTDKPAEDTGDELFHQAALLFIEAGNASVSLLQRRLRIGYTRAARLM DLLEEKGVVGGYEGSKPREVLLTKGQFDQKFGLGEEEIG" sig_peptide complement(3345032..3345139) /locus_tag="Dhaf_3131" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.629) with cleavage site probability 0.461 at residue 36" gene complement(3347613..3348305) /locus_tag="Dhaf_3132" /db_xref="GeneID:7260143" CDS complement(3347613..3348305) /locus_tag="Dhaf_3132" /inference="protein motif:PFAM:PF00574" /note="PFAM: peptidase S14 ClpP; KEGG: pth:PTH_1290 protease subunit of ATP-dependent Clp proteases" /codon_start=1 /transl_table=11 /product="peptidase S14 ClpP" /protein_id="YP_002459591.1" /db_xref="GI:219669156" /db_xref="InterPro:IPR001907" /db_xref="GeneID:7260143" /translation="MRSESENQNEPINPEVQALKEMGQIRIPEPSESIYCLTVVGQIE GHQVLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAGGDVEAGLAISELVSSLS KPSVSIVLGGGHSIGIPIAVSCDRSFIAPTGTMTLHPIRYTGLVINGHQQFDYLQKMQ ERINSFIIQHSQITEEQLKKLMFATGELAQDIGTILIGQDAVDIGLIDAVGGLKEAYG ELKRLIGSKRES" gene complement(3348430..3348747) /locus_tag="Dhaf_3133" /db_xref="GeneID:7260144" CDS complement(3348430..3348747) /locus_tag="Dhaf_3133" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459592.1" /db_xref="GI:219669157" /db_xref="GeneID:7260144" /translation="MLIWSLMLVCLLNIPFGYWRENVRKLSLPWFMAIHLPVPFVALL RHHLELPGATLLAFLAAYFLGQYLGSRLSRTLRPYGNVSSSLVHDLVHRSWIIIIGRQ IGR" gene 3348894..3350450 /locus_tag="Dhaf_3134" /db_xref="GeneID:7260145" CDS 3348894..3350450 /locus_tag="Dhaf_3134" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_1812 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459593.1" /db_xref="GI:219669158" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260145" /translation="MSILNVENVNHGFGGRKILENTTFRLLKGEHVGLVGANGEGKST FLDIITGKLIPDEGKVEWSNRVSVGYLDQHTVLTQGKSIRDVLREAFQKMFELEAEML ELYNRMAEATEAQMNKMMEDVGEIQTILESNGFYMIDAKVEEVANGLGLGEIGLDKDV ADLSGGQRTKVLLTKLLLQKPTILILDEPTNYLDAEHIIWLSNYLKDYENAFILVSHD IPFLNDVVNVIYHVENADLTRYTGNYEQFMQLYNIKKEQELKAYEKQQKEVDRLEDFI ARNKARISTTGRAKSRQKQLDRMEILEKPKEKIKPQFRFKEARSPGRVIFEAKDLVLG YNEPLTRPLSLHLERGQKVAIRGVNGLGKTTLLKTLLGIIPSLSGEVILGDYLYPGYF EQESSRGNTNTPIEEIWQEFPGLTNYEVRQALAKCGLTNEHISNKMMVLSGGESAKVR LCKLMLKDINFLVLDEPTNHLDVDAKDELKKAIREFKGTVLLVSHDPDFYSDWVSDIW NLEQWTTKIV" gene complement(3350534..3350893) /locus_tag="Dhaf_3135" /db_xref="GeneID:7260146" CDS complement(3350534..3350893) /locus_tag="Dhaf_3135" /inference="similar to AA sequence:KEGG:pE33L466_0142" /note="KEGG: bcz:pE33L466_0142 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459594.1" /db_xref="GI:219669159" /db_xref="InterPro:IPR010106" /db_xref="GeneID:7260146" /translation="MPRWLLLLEGADNQEILQVLEEIAVKDPVLYQAMAAWEETSDDP RVREAYYDRRKAILDEKAAIREAELRLKEALEKGIEKGKAEVARKLLDLGFELTKISE ATGLTEEELKNLREGQA" gene complement(3350894..3352930) /locus_tag="Dhaf_3136" /db_xref="GeneID:7260147" CDS complement(3350894..3352930) /locus_tag="Dhaf_3136" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mta:Moth_1487 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002459595.1" /db_xref="GI:219669160" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7260147" /translation="MKLKKIKYKLLLVFMPIFLLSFIALSAISYYLSSSALSQSVEET GMAVGREYAVRVEGYIEQAIIQQEAFAAEIVYMGALEDQQQLVKTLEWGKSRSKVLES AVFIAPSGAAVRSDGTTVELGDRDYFKKVLATKSPVVSELVTSRTTGKTAFNVAVPVM DGDQVLGVLTGSFAMEKLGGLMKDLKFLSTGYGLIVDGSGLVIAFPQAEEMVGKLDLS KEDIDESLKTKEAKLDKKLMELFSQSMEEKGQLVGRYTSIRGVEVIGTFTPINLAGDR QWNVLIAAPVTEEYEPISNLARSMVVTSFLCILISIAVTVIFSGRMSRVFIRLRDECL VMAEGDFRQRDEEAEAYDEVGQASAGLVKMRSNVRELIAKAMAGVEQVAASSQELTAV SEQSASAADQVAQSVGEIACSAETEAVAIKHLEEESQRIIEGLEKIDSSTANVERLSL DARQSADHGLLKVEEAIAQMQKVGQGSAEMQETVAKLQNGFGEISQIVDIITSIAEQT NLLALNAAIEAARAGEHGRGFSVVSEEVRKLAEESRTAADRIRLLVKDNQENVEMTVQ VSHESAESIDLGISHVFSTGESFKGIKTAIENLSQDVGQVSAAVEHLAEIGRSFYGQL DKINEMSERTSGETQNVSAATEEQLAAMQEVANYSQRLSEMAGNLQAVIGEFKI" sig_peptide complement(3350894..3351010) /locus_tag="Dhaf_3136" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.595 at residue 39" gene complement(3353254..3353847) /locus_tag="Dhaf_3137" /db_xref="GeneID:7260148" CDS complement(3353254..3353847) /locus_tag="Dhaf_3137" /inference="protein motif:TFAM:TIGR03162" /note="TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="alpha-ribazole phosphatase" /protein_id="YP_002459596.1" /db_xref="GI:219669161" /db_xref="InterPro:IPR013078" /db_xref="InterPro:IPR017578" /db_xref="GeneID:7260148" /translation="MKKVYLVRHGDIGLGRNKRYIGIQDLSLSEEGREQAFSLKERLR EVPLDRIYCSALSRSRETAAIITEAHSLSLTVLPELHEIGMGEWEGRLFSEIQERFPA EYRLRGEDIVHHRPPGGESFLQCSRRVIPLFESIVRSDAQTSLIVGHAGVNRVILCHA LGLPLQELFSFKQSYGCLILLNQAHRGQWEVKYIIPE" gene complement(3353844..3355040) /locus_tag="Dhaf_3138" /db_xref="GeneID:7260149" CDS complement(3353844..3355040) /locus_tag="Dhaf_3138" /inference="protein motif:PFAM:PF02625" /note="PFAM: protein of unknown function DUF182; KEGG: pca:Pcar_0227 xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF182" /protein_id="YP_002459597.1" /db_xref="GI:219669162" /db_xref="InterPro:IPR003777" /db_xref="GeneID:7260149" /translation="MDKEIKMGLQHVLEEKLEAALITVTKVLGSAPRKPGAQMLVLAD GTSAGTIGGGCGEADARQAALQVLATGKPRKHCLNMTADIAEDEGMVCGGIMELFIDY LGRHNGTEQLNLLENYVLSFHHGETPVLVTLTESKQDKAGQKLVIQKNGQVTGDLGLP ILNQIALEEVGAGRGHGHFAVLNLDERFNPCDTTTEVAYQMLLEPPVSETKLVILGAG HIGLPLAGMGKMLGYEVTVVDDRPSFANSGRFRTADRVICNDFEKALADLVIDSQTYV VIVTRGHRHDKVCLKRVIHQPAGYIGMIGSRRRVKAMLAELQEEGIPAAALEKLYSPI GLKIGAETPEEIAVCILGEIIKVQREHKDRVKQQDGVRQQDNVKLQEEPATSVRNNEE PQKMLV" gene complement(3355033..3356202) /locus_tag="Dhaf_3139" /db_xref="GeneID:7260150" CDS complement(3355033..3356202) /locus_tag="Dhaf_3139" /inference="protein motif:TFAM:TIGR00277" /note="KEGG: gur:Gura_1006 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002459598.1" /db_xref="GI:219669163" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7260150" /translation="MNGIGATPYSESQKFHIAAIILAAGFSLRMKSFKPLLPLGSASV IETAIQSFRKAGFMDIRVVLGHKAGELLPICDALGVQPILNEDYAEGMFSSVKAGVKS LGREVDGFFLLPADNPLIQADTLQRLYEGFNLGPGGIVYPVCQGKRGHPPLISRSYRD SILSWRGEGGLRALLEHYQADALEVGTEDQGVLLDMDTPEDYRTLLKHYGCAPTPTEF ECYELLKGNNTPDQVIKHCETVARLSVFLGEQLSEAGLHLNRELLRTSALLHDIARLK PNHPQEGAKLTAAYPEVSAIIAAHMDCPWEPSQPLTEQEIVYLADKLVAKERIVSLQE RFKGSVERHQNEPEVLEHVYRRFGQAYRIHDRVEEILGKSVQTLIKSNLGSDVHG" gene complement(3356199..3357542) /locus_tag="Dhaf_3140" /db_xref="GeneID:7260151" CDS complement(3356199..3357542) /locus_tag="Dhaf_3140" /inference="similar to AA sequence:KEGG:Sfum_1315" /note="KEGG: sfu:Sfum_1315 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459599.1" /db_xref="GI:219669164" /db_xref="GeneID:7260151" /translation="MVPEKTPLEAWIARKVTGSSSEMLTTKKLRDYQLNKLGETIDYV RAKSSFYQRHLPRHGAKADCSLVQLEDIGALPFTTAADLRRFGQEMICVKGSDIHRIV TLQTSGTTGLPKRVFFTEEDQELTLDFFHQGMLTMVKPGDRVLILLPGKVPGSVGELL QRGLARAGAEGLVHGPVVTPQAALEQMNRDKVNVLVGIPTQVLTLARVQKKAQVTLPP LHSVLLTTDHVPRSIVRELVKVWGCQVFNHYGMTEMGLGGGVDCRGLSGYHLREADLY FEIIDPLTGRPVQAGEFGEIVFTTLTRTGMPLIRYRTGDYSRFIVDACPCGTVLRNLE RVGSRDCLNLGAGKLLSMADLDEVIFPWEGVLDFSARMAEEYGKMVLTLEILMDGPNR ERVEQTIRQEVETHPALRNLMEEGQLQVNLNFNADTAAYRGGNGTGKRMICDQRG" gene complement(3357545..3358870) /locus_tag="Dhaf_3141" /db_xref="GeneID:7260152" CDS complement(3357545..3358870) /locus_tag="Dhaf_3141" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pth:PTH_0684 Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459600.1" /db_xref="GI:219669165" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260152" /translation="MSSTMISDTRSVCPECLKRIPARRIVEEDRVYMVKRCPEHGEYR ALLWRGNPGWESWVRPTLPSQPLACFTEVAEGCPYDCGLCADHWKQTCAALLEVTQRC NLNCRFCFADAGGSARDPSLEVLTRWFRKVMEASGPTNIQLSGGEPTLRDDLPEIVAL GKSEGFDFIQVNSNGLRLAAEKDYVRRLQEAGLDSLFLQFDGVDDTVYSALRGRKLLS TKIKAIENCAELGVGVVLVPTLVPGINTQQIGDMVRFALEYHPGVRGIHFQPVSYFGR IPQEPRDEDRFTLPEVIQAIEEQTQGLIKASDIKPNNGKCSFSSSFVKQSDGSLRSVQ TKNCCGEPERAEDLVRKTRSFVARQWGGIEQTAGTCCSGNSWDLQLRQIKSAGFALTG MAFQDAWNLDLERLQNCCIHVLSPEEKMIPFCAYNLTDCQGKSLYRKEP" gene complement(3358855..3359601) /locus_tag="Dhaf_3142" /db_xref="GeneID:7260153" CDS complement(3358855..3359601) /locus_tag="Dhaf_3142" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pth:PTH_0682 hypothetical protein" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_002459601.1" /db_xref="GI:219669166" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:7260153" /translation="MKNLYENDLLYRTTGPALRPGGFELTDWAVEHCRFQAGDRILDV GCGRGATVNRLRSHYHLEAYGIDPSATLLTLGQETYPDLPLSKGRGEDIPFTNSCFDG VFVECSLSLMTDPDQALSEIRRVLKVKGKLIIHDVYARNPQGTPDLRELNIGTCIRNA LVKEDLEHGLESKGLRTIHWQDHSPLLNRLMMELIMTHGSMSAFWLKSTDCSADPNRV QAALKKAKVGYFQLIAEKEAEKEAEHCPVR" gene complement(3359585..3360034) /locus_tag="Dhaf_3143" /db_xref="GeneID:7260154" CDS complement(3359585..3360034) /locus_tag="Dhaf_3143" /inference="protein motif:TFAM:TIGR01909" /note="TIGRFAM: C_GCAxxG_C_C family protein; KEGG: pth:PTH_0683 hypothetical protein" /codon_start=1 /transl_table=11 /product="C_GCAxxG_C_C family protein" /protein_id="YP_002459602.1" /db_xref="GI:219669167" /db_xref="InterPro:IPR010181" /db_xref="GeneID:7260154" /translation="MPVDGFRLFQLAAQGFCCSQILIMIGLEDQGKVAPELIRAMHGL CGGMGRSGATCGVLTGGACLIGLAAGKGTVSEQAHPRVHRMVQELLEWFEETYGSLLC EDILHYKLEEGTDYPVKCGSTISAAYDKVQELLAAHMEPENEYEEFI" gene complement(3360046..3360255) /locus_tag="Dhaf_3144" /db_xref="GeneID:7260155" CDS complement(3360046..3360255) /locus_tag="Dhaf_3144" /inference="similar to AA sequence:KEGG:PTH_0681" /note="KEGG: pth:PTH_0681 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459603.1" /db_xref="GI:219669168" /db_xref="GeneID:7260155" /translation="MSKTENQPQTVWKCGKCNVELSRGTIIVAYLGNEIRVEELKCAQ CGLVLITEDLALGKMFEVEQSLEDK" gene complement(3360252..3362561) /locus_tag="Dhaf_3145" /db_xref="GeneID:7260156" CDS complement(3360252..3362561) /locus_tag="Dhaf_3145" /inference="protein motif:PFAM:PF01266" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD dependent oxidoreductase; KEGG: pth:PTH_0680 hypothetical protein" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_002459604.1" /db_xref="GI:219669169" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260156" /translation="MGMKMEQDELRRLESKCIQENPPACTAGCPIHVDARQMLQAIQN QDWQKALGALWQKQPFPGIISRICDHPCQEVCRRGEVGEAISISALEKYCVENHSYQA PKAKPIAYKNQRVAVIGGGLRGLTAALDLAKKGFQVTLFEAGERLGGKLWTYSRQQLP REVITEDLKLLNRPNVEVRLNAPITQQDLPPLQEEFPALYIALAAGSTPATDVLGEGY AVDTQTCATGRAGVFAGSYGGEPSPIQEVAEGRRAALSMDRYLQGASLTASREWEGES ISNLFVNLEGIAPLAAVIRKDKDLGYSGEEALAEAGRCLNCQCLECVKACKYLKSYGR YPKKYLREIYNNDAIVKGTRYANKMINSCSLCGLCAEVCPHDLNMGDVCLSSREGMVR NKRMPPSAHDFALRDMAFSNSGQFLLTRHQPGFSESRFVFFPGCQLSGSSPEHVENVY ALLTARLPGGVGLMLRCCGAPAQWAGEEELFQGTTADLVKEWEGLGRPQVIAACSSCY SMFKETLPVVSLWEVLNDLEISLPATSTPYPLAVQDPCTTRHEESIHKAVRGLLTKLN CQVEELPFSRELTKCCGFGGLMSFANRTLAQEVTVARSQESPLDYLAYCAMCRDRFSA YGKRIVHILDLMFPRAEGEAATREDPGFSHRHENRARLKRKMLRETWQEGLGSEGRER AIELVISPEIRKSMEERLILPEDIEQVIQAAEQSGRKFINPENGHSLAHHRPSRVTYW VEYETQESGVYRVHNAYSHRMEVIEEVKS" gene complement(3362694..3365426) /locus_tag="Dhaf_3146" /db_xref="GeneID:7260157" CDS complement(3362694..3365426) /locus_tag="Dhaf_3146" /inference="protein motif:PFAM:PF02738" /note="PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sfu:Sfum_1310 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding" /codon_start=1 /transl_table=11 /product="aldehyde oxidase and xanthine dehydrogenase molybdopterin binding" /protein_id="YP_002459605.1" /db_xref="GI:219669170" /db_xref="InterPro:IPR000674" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR002888" /db_xref="InterPro:IPR006058" /db_xref="InterPro:IPR008274" /db_xref="GeneID:7260157" /translation="MINKSIIINGVRQTLIVDEEVTLANVLRGQLHLTGTKIGCGKAQ CGACSVIMDGKVIRSCVTKMKRVPDEAQITTIEGVGTQKELHPLQLAWMIHGGAQCGF CSPGFIVSAKGLLDENTNPTREEVRDWFQRHRNACRCTGYKPLIDAVMTAARLIRGEV KVEELWEKLPQDGSIWGSNYIRPSALAKVTGTCDYGADLGIKMPCGTLQLKLVQAKVS HANILSIDTSEAEKMPGVYKVITHKDVKGKNRITGLITFPNNKGDGWDRPILCDEKVF QFGDAIAIVAADTEEHAQAAVEKVKVELEILPAYMSAPAAMADDAIEIHPGTPNIYWE TKVIKGEETAPIMEDSEVVVVQDDFYVGRQPHLPMEPDVGFAYIDDQERVVVHSKSIG IHLHHAMIAPGLGLEPDKLVLVQNPAGGTFGYKFSPTIEALLGVAAMATGKPVFLNFD YYQQITYTGKRSPFFINLKYGATKEGKLLAMEADWSVDHGPYSEFGDLVTLRGSQFIG ASYMIPNIRSNGRTVCTNHAWGSAFRAYGSPQSLFATEVLMDELAEKLGMDPFELRYK NIYRPGDTTPTGCQPDVYSLVEMMDKLRPLYDAAKKKARAESTADKKRGVGISLGAYG AGLDNPDGSEAWADYTETGVTIFNAWEDHGQGADMGTLATAHQALLPLGIKPEQIKLV MNDTSITPASGPAGGSRSQVMVGNAIKIACEELLKGIQKPDGTYRTYAEQVEAGLPTH FIGKYGTPAGYNGCDLETGQGAPFTTYMYAAFMSEVEVDVQTGKTKVLGMTGIFDVGT LANKLVVDGQMYGGMIQGLGLALSEDFEDLNKHIDLISCGLPYPKDIPEKLVVDYVMT PREHGPFGASGVGEAPLTSPHASIINGITDACGVRITRLPALPEKVLAGLKAKQ" gene complement(3365599..3365742) /locus_tag="Dhaf_3147" /db_xref="GeneID:7260158" CDS complement(3365599..3365742) /locus_tag="Dhaf_3147" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459606.1" /db_xref="GI:219669171" /db_xref="GeneID:7260158" /translation="MLPLVPNIKVSTSIASVQYLPQPGLKSFCEPYAVQLSYSVSAQS VHF" gene 3365773..3367659 /locus_tag="Dhaf_3148" /db_xref="GeneID:7260159" CDS 3365773..3367659 /locus_tag="Dhaf_3148" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0788 sigma-54 dependent transcriptional regulator" /codon_start=1 /transl_table=11 /product="GAF modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_002459607.1" /db_xref="GI:219669172" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7260159" /translation="MMPQENWLRFVNGEPTVQNIAPLIYRSWQRSLAHNINPAVISNN KFLNDSGLRELRESREDLIRAAGSVLPFLFQLLNSSNFSILLGDKDAFILESLGDGPF LSKAQRIFLSPGGNWGEDVKGTNAIGTALIEGMPVTIQGMDHYVQENHFLTCSAAPIH GLQGEIIGVIDISAEIGNQHCTLDIALVGARLIEQNLRHLTIERELKFYQQGSKLAVD LLKDGCLSIDRHGMITQVNATGASLIGRKKDDLIGRHVTDVLGAPKGWVLNQDTLDLR HKDGKGHELVTHFQRISDNSGSSLGAVGVIQIIGQNLDNLSWVGRTSLKSREILEKAH KAAQTDFSVLLQGQTGTGKEIIARMIHELSPRKNGPFIALNCAAIPNTLLESELFGYA DGAFTGARRGGQPGKFELAHGGTIFLDEIGDMPLNAQVALLRLLQEKALVRIGGKTLQ KIDVRVITASHKDLKALVDAHAFRHDLFYRLKVVSIELPPLRERLEDLPELVTHFIHK ACAAIGRPMIDMAESVYPYFYSYSWPGNVRELENCLAGMVAMCNGSLLTVRDLPPEVR ESLSEKTEDEDVSLLASQTRQIILQALVKTDGKILPASRLLGISRTTLYRKMKELKIS LPRT" gene 3367743..3368504 /locus_tag="Dhaf_3149" /db_xref="GeneID:7260160" CDS 3367743..3368504 /locus_tag="Dhaf_3149" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: cdf:CD3197 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002459608.1" /db_xref="GI:219669173" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7260160" /translation="MNTYKTSEIAHSIGIHPNTVRLYEELELIPKPLRKANGYRVFTD FHMEQIKLARIALKVEVLQNGLRKQAIAIIKTSALGKFSKAICLTEYYRQQIRNEQKN AEEALAIAGKLLSGGSQETGTGFLTRKEAADYLQISIDALRNWEMNGLLTVKRKQNGY RVYTAEDVRRLKIIRSLRCANYSLSAILRMLSTLSQNPEADIRQAIDTPKQNEDIISV CDKLLTSLHYAEENAKVMLAHLEKMKKQFQRNPPL" gene 3368564..3369307 /locus_tag="Dhaf_3150" /db_xref="GeneID:7260161" CDS 3368564..3369307 /locus_tag="Dhaf_3150" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbb:CLD_0041 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459609.1" /db_xref="GI:219669174" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260161" /translation="METTIEVKNLCKSYDHIKAVENINISLCRGEVFGLLGANGAGKS TTIECILGTKKQDSGSIAILGMNPQQERKNLFERVGVQFQEANYQDKIKVAELCEVTA ALYKSSQNYGPLLKQFGLSDKLKSLVSELSGGQKQRLFIVLALIPNPEVIFLDELTTG LDAKARRDVWKSLSELRAKGITILLTSHFMDEVEALCDKIMILKKGKSVFYGTVQEAI AASPYQKFEDAYLWYTDEEVENESIQSLT" gene 3369282..3370025 /locus_tag="Dhaf_3151" /db_xref="GeneID:7260162" CDS 3369282..3370025 /locus_tag="Dhaf_3151" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: cbo:CBO0710 drug resistance ABC-transporter, membrane protein" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002459610.1" /db_xref="GI:219669175" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR013526" /db_xref="GeneID:7260162" /translation="MKAFRALLKTEIRLSLRGMDMFIFAVCMPVVVVIILGAVFGNKP AFAGAEYTFLEQSFGAVSAIAICAGGVMGLPLVVSDYRSRKILKRFKVTPTSPALILA VQVVIYALYSLISLILVYGTGAIFFGYQFYGSWWQFLGAYLLVMLSMFSMGLLVGGVA PNIKTAGAAASLLYFPMLILSGATLPYEVMPVALQKVADILPLTQGIKLLKAASLGLP IDSVFIPVVVMIVIAVICTTVSLRFFKWE" gene complement(3370012..3370596) /locus_tag="Dhaf_3152" /db_xref="GeneID:7260163" CDS complement(3370012..3370596) /locus_tag="Dhaf_3152" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aba:Acid345_0869 formate dehydrogenase beta subunit" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459611.1" /db_xref="GI:219669176" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260163" /translation="MSDMAMLIDSTSCIGCKACLAACKQENGLATDNNYLKMHPVEFL NDHYVRYYAHVSCRHCSEPQCAAVCPVGAIKSTDDGVVLHNELLCIGCQVCAAVCPYA AMGIMNNGLVGKCTLCQERLSSGLSPACVSVCPTGARVFDAKEKVAKLAREREIAAEK KGYKAQVEGLDNHNKVLTLLPNRITVTGRPSIPT" gene complement(3370593..3372662) /locus_tag="Dhaf_3153" /db_xref="GeneID:7260164" CDS complement(3370593..3372662) /locus_tag="Dhaf_3153" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pab:PAB1389 alpha subunit of formate dehydrogenease" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002459612.1" /db_xref="GI:219669177" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:7260164" /translation="MAFVRVQGLHRNRTVMPDSDKVKTSICCLCNGGCGLKVHISPEG TIKAIYGDPDNPYNKGKICPKPIEIIENLRGPERVQYPMMKVNGEFVRISWEEAIDTI AKKYKEFSDNFGTGSVIGITSKIGGSFSKFALKIFGEIAGFANYGTGPICFSSEEKVR KEMFGKAAASAPLHDVIYSKLVLNVGNNCAQTKAGQFHWLQEGQKHGAKIITIDTRYT ETAQLSDQFIQVNPGTDAALGMALLHLVIKHKHYDEAFVRDQVNGFAELAQAVEDFTA EKAAAITGVPEKVIEELAYELGTKKPAIMWPGRGIVMVNNGEQALMAFESLFAILGNV GKPGAGVVSHINGYGQPADLIKPEHVVKPSFKLPADKVIEGMETGQIKMIYIAGNPCA NWPESARMKKALGKLDFVVSHTLTLDDSACLAHIVIPATHWLEEAGMQPGIHRVMQWR DKAVEPYGESKPAAEVFKLLAAKMGLPTEYFADTPEEAWDMERRHIAGISAITVAKMQ EKPGGVHYPYPEGGEESHRLYSKGFNTPSKKVELLRGKGSVLHYKDPLQSPGNEGLSI EDYPYFISSVKVAAHYHTQCQYSRLAREFEKPYVEVHPQTALKLGVKDGEAIRIETPT GAISLPAKLTYSVPQNHFFTQPYFSKRYNSDSINTLLPSVLDQPGGNFPHKNVLCRAY SEGGCKK" gene complement(3372649..3373908) /locus_tag="Dhaf_3154" /db_xref="GeneID:7260165" CDS complement(3372649..3373908) /locus_tag="Dhaf_3154" /inference="protein motif:PFAM:PF00070" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tma:TM0395 NADH oxidase, putative" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002459613.1" /db_xref="GI:219669178" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7260165" /translation="MHYVIIGNSAAGVFAAEALRGLDSSGKITMISEENNRPYSRCLT SYYIGEEIDQDRIYIRDANFYAATGIDFIPQKVEQVNDTEKSITLQSGEIVGYDKLLI ATGASPYSLPVEGLDLEGVCELRTLEDARRIMDFAPHVKEAVVMGAGLVGLKGAHALH ELGIKVSIIVNSRIMSRSVDPHTGQIITELLEQDGYEVIYNTKLSKILGQDKVEGVCL SSGKEIPCQLVLMAAGVSPNVDLVKNTGIEVNKGIIVDKHMQTTVSHIYAAGDVAEAY HAVWDEKRVISIWPVATAQGTVAGSNMAGVERIYEGSVGSNSAVFCGVGVVSAGIPYL PTGEGQELSTYDKATKRYRKFIVKDDILVGMIMVGDIDGAGILTAMIKQKTKVSLDTL NYWLNHPVRFQGYCTAEAKGGIVCGIC" gene complement(3373896..3374372) /locus_tag="Dhaf_3155" /db_xref="GeneID:7260166" CDS complement(3373896..3374372) /locus_tag="Dhaf_3155" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0735 iron-sulfur cluster-binding protein CooF" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459614.1" /db_xref="GI:219669179" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260166" /translation="MRKLYFIPERCNGCLACEQVCRQKQSKTQSLFNSKAETPLAKPQ IRVSGADGRYSVSVCQNCVHAACVEACMAGALSYSDAGHVSHDAKQCVSCYMCVMVCP FAAIAPQLTTGKAGKCQLCLDEEQPPCMIACSRKALFFGTAAEYEKEIEGDRLCIM" gene complement(3374466..3375404) /locus_tag="Dhaf_3156" /db_xref="GeneID:7260167" CDS complement(3374466..3375404) /locus_tag="Dhaf_3156" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: drm:Dred_1264 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF81" /protein_id="YP_002459615.1" /db_xref="GI:219669180" /db_xref="InterPro:IPR002781" /db_xref="GeneID:7260167" /translation="MHFPLAGVEANPIFLVLWGVFVGYVFTSVGAAGGILAGVGHMSI FGLKNANMVKPMNQILTLVTPIVGTPLYFRERRVVIPTAIALGLGGIIGALIGSTLSH SLLKDMATFKPFFGIVTLGISFRIAYECTNKFINGQKKVKQANDNFAKKVKELSEQGK LSELKEIGVKFQQTGIKNKFTFSGEEFTYNAIVVFIAGLLVAILSASLGVGGGFLLVP FMTSILGFPMYIVAGTSTLSILVSSSTSILNYLSMGSSLDLTFLAFELAGVAIGTVVA ARISKYINARYMKMFLAFLLFYIGLKYFLPVFGINI" gene complement(3375424..3375840) /locus_tag="Dhaf_3157" /db_xref="GeneID:7260168" CDS complement(3375424..3375840) /locus_tag="Dhaf_3157" /inference="similar to AA sequence:KEGG:Dred_1263" /note="KEGG: drm:Dred_1263 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459616.1" /db_xref="GI:219669181" /db_xref="GeneID:7260168" /translation="MNNMLKILDFLRDPHSQKIQQHKERYQELDELSNVAVTINDQEA YKSLQAEMREVFFDYLTALGMDAIYKFFPHLVLACLISLKFKTITIPLFNWQVNTVFA YLCLYFLFHFLLKPVIGLIKTKMTKVEQASIQMDTK" gene complement(3376082..3376753) /locus_tag="Dhaf_3158" /db_xref="GeneID:7260169" CDS complement(3376082..3376753) /locus_tag="Dhaf_3158" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: drm:Dred_1262 CRP/FNR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002459617.1" /db_xref="GI:219669182" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7260169" /translation="MIENVNYARTLLTEEEVGHIVQSGTIVRYKKGQIIFSESDAADR VYFVKEGYVRIFRITQYGRRVTVGCIRSPGQLMGLAETLYGGDRTCFASAIDDVTIVV IRHQQFLDLLEKHPAIAIKVTITLAIRMREAEGIIEEMVCFQVPGRLAQLLIKMAKRA GMETPRGTKISFRLTHEDIAYMIGTSRQNVTSLLNTFKYENSIAIEDKELYILDIEKL NSWVV" gene complement(3376923..3377621) /locus_tag="Dhaf_3159" /db_xref="GeneID:7260170" CDS complement(3376923..3377621) /locus_tag="Dhaf_3159" /inference="similar to AA sequence:KEGG:Dred_1428" /note="KEGG: drm:Dred_1428 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459618.1" /db_xref="GI:219669183" /db_xref="GeneID:7260170" /translation="MIKNKKSFIIGSLLLLSFAVCFVVIMSPIFGNGRNGLNYADDMF NSFSKASSNFISETAEVAQSQQGIHISLDLKASSPEEAERWGKLYTNAGAAVTIQDSS LSINGDFGKILNAVVIDSESMYNNDGEAVEKRYGYAAREATNDWNNSLKKIDKELKAS SMFKESATLTRVVQKALEPGYNYYGVEAKKVSENKAILSFLLIFYLLYTVWYGFGLFH FCEGFGISTSKSHK" sig_peptide complement(3376923..3377018) /locus_tag="Dhaf_3159" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.944 at residue 32" gene complement(3377618..3378949) /locus_tag="Dhaf_3160" /db_xref="GeneID:7260171" CDS complement(3377618..3378949) /locus_tag="Dhaf_3160" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: drm:Dred_1425 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF81" /protein_id="YP_002459619.1" /db_xref="GI:219669184" /db_xref="InterPro:IPR002781" /db_xref="GeneID:7260171" /translation="MMRRLYQSLMAASRAHAQWEIETTTNIIKNRKMLIILLLMALPL IIPAMVHAASLPEAIGGKAAYGPSYFSAKMFYGSIAIGVVAGLVTGCIGAGGGFLITP ALMSLGVKGILSVGTDMFHIFAKAIMGTTLHKKMGNVNVGLAVAFLVGSGLGVTGGGI INRALYNYNPVMSDFTISMIYAVLLGFLGFFALSDYFKVRKSELSKNKIGLEKLTPMA ERMQSVNLAPMIQFDEKIVPGGRKISGVFVAISGAITGLLAAILGVGGGFVTFPMFVY GLGISTYTTVGTDILQIIFTAGYGAIAQYALYGYIFYTLAMGCLLGSLLGVQIGAITT KVVSQSKIKAFYAIAILAGFINRIFALPEKLSQMGYISLTPSTGAILTNIGVWVFFGL VAIFAVWIIGTFIVNVPNLRAEYDEGSKAEYNAEYGEDNKAVVSTKRGAAQ" sig_peptide complement(3377618..3377776) /locus_tag="Dhaf_3160" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 53" gene complement(3379516..3380115) /locus_tag="Dhaf_3161" /db_xref="GeneID:7260172" CDS complement(3379516..3380115) /locus_tag="Dhaf_3161" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459620.1" /db_xref="GI:219669185" /db_xref="GeneID:7260172" /translation="MLSPRLHSRIWESGKITSPIWLVFNPKHPLVSNYIWLPVLTEMQ DKIFKELNTRINSTHIYKRNVVSDNVDTPITENWWDAQINVEIERFRVLALEYKPQII ISFGAFPYEFLRRAYRIGPKKGPKSWTNSKLEGEFKKSIQSFDANKTNLIPLLRRMPL SRKYKEEHNKDYFEKNIHYVSKKIAEKIIENKNHLNIWI" gene complement(3380134..3380916) /locus_tag="Dhaf_3162" /db_xref="GeneID:7260173" CDS complement(3380134..3380916) /locus_tag="Dhaf_3162" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459621.1" /db_xref="GI:219669186" /db_xref="GeneID:7260173" /translation="MSSLRHLSYIFTFECIIRDNEYINKWLYLKLKAPLITCNIDFNS LFCVGKVEIVLSEFSILSSHLISSGKSDELASPIWLLFNPKHPIVREYIWKLVLAEIQ EILYIELQARMDTSKLCIRNAVNNIRIVPDTLHWWNTELSAEMALYRELVQTYQPKII ISFGSFPFEFVRRVFKMKPEKGPKFWGVAKLGEEFRKSINEFDVTKTNIIPLLRRMTE CEKFIGDHSSENYYHYVGTTIAKKIIENKASFNHILMNKVIE" gene complement(3381030..3382607) /locus_tag="Dhaf_3163" /db_xref="GeneID:7260174" CDS complement(3381030..3382607) /locus_tag="Dhaf_3163" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sth:STH2003 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459622.1" /db_xref="GI:219669187" /db_xref="GeneID:7260174" /translation="MKIDYCKLTEDLMPLYDDELLSKETKDFVEWHLEQCPECRKKYR DSDGQVPDIRKEIIYPELLNIEEEDKFRSAKTFLLKVRKRIFTAGIVVLIIMLIASAG SFFYGKSFNNEVPVKVNSVEDFANSLVPGWQRAQQSGQIVDINITKPIPDTEAVVTFE KVWYTPSYTYVLYTVTEPNKNYLMASQRVIDIPPEDYMRDNSTMEPLGKRWGGISPQG YHQIMVFMGYHTPVPAQELTLTVSNWIIPEGSMKPEPVDTIKGEISVNLPLQDEFLKE SSERVNLDKSYEWEGRSLRLTGLEVKSSQTLLYGEAKLQEGETLSHLEGFIRSGGQSA GLSYESIVPGDAPNSFKFTLSAQPLNQWPGKVSLDIRAIQFKTSEVLNFPVDWSFYVS KEGQIDVTEEQVPAVAFYDGMVRLSSIDPTSWLELEIVEPSQNPLNKQPYIIMSPDPP FVERFNNYTTGLKITNEHGEVLEVGSRGSFRDGGRMGVGFEMDSEDELWKTSKKITIT INKPEAHLVVNQEIELN" gene complement(3382597..3383103) /locus_tag="Dhaf_3164" /db_xref="GeneID:7260175" CDS complement(3382597..3383103) /locus_tag="Dhaf_3164" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_1766 predicted sigma factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459623.1" /db_xref="GI:219669188" /db_xref="InterPro:IPR000838" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7260175" /translation="MYMELSAPIFSYLLRLSGDYDLAEELTQETFLRALQALPKFREE ASVKTWLYAIARNTYLSKINKSHPKGIVFTSFDEEFLDGGERSADPAEQLLQKEQSQT MQRAIYCLPETYRTVIILREFEELSYGEIAKILGKTENWVRVTFFRAKQKLKETILAL ERGKESED" gene complement(3383270..3384187) /locus_tag="Dhaf_3165" /db_xref="GeneID:7260176" CDS complement(3383270..3384187) /locus_tag="Dhaf_3165" /EC_number="1.1.1.169" /inference="protein motif:TFAM:TIGR00745" /note="KEGG: ckl:CKL_2208 predicted 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_002459624.1" /db_xref="GI:219669189" /db_xref="InterPro:IPR003710" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR013752" /db_xref="GeneID:7260176" /translation="MEIKTVAIIGLGAMGILYGSHLAKRIPQPDLRIIADQQRIDRYL KDAIFCNGQRCEFHYVTPEEKTSPADLILFTVKYSGLEDAIRAVKNQVGENTLILSAL NGITSEAMIGEVYGHDKVLYSVAQGMDAVKEGNRLTYAHMGFLCFGDREPGSSSAKVK RVADFFTKMEFPYLVDTDMPKRLWGKLMLNVGVNQAVAVYGSNYGVIQKEGTARDTMI AAMREVIALAEKEGIDLTEADLDYWLGVLSQLSPEGKPSMRQDVEAGRYSEVELFAGI VIDLGKKYGIATPVNQSLYDQIKATEAGY" gene 3384476..3385429 /locus_tag="Dhaf_3166" /db_xref="GeneID:7260177" CDS 3384476..3385429 /locus_tag="Dhaf_3166" /inference="protein motif:PFAM:PF04754" /note="PFAM: putative transposase YhgA family protein; KEGG: amt:Amet_0218 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative transposase YhgA family protein" /protein_id="YP_002459625.1" /db_xref="GI:219669190" /db_xref="InterPro:IPR006842" /db_xref="InterPro:IPR010106" /db_xref="GeneID:7260177" /translation="MSLIHNPHDKFFKETFGDIGMARSFLKNYLPQEILALVDLETIL PQKDSYIDQELQESFSDLLFQVKIHKNEGYLYFLFEHKSYPSQGIALQLLKYMVRIWE SKLKESKTDKLPLIIPMVVYHGQEKWNSSLKLSGIIDNYEQLPNAVTQYIPEYEYILY DLSTYTDQEMVGNMLLLIILRTMRDIFIKDTEAFHNILHELLISFERVEDQEKGMQFF ETLIRYILSTRQDLELKRIYEIAKEVSLERGEVMMTIAEKLIMEGMEKGLKKGREEGL EKGREETKLEVARNLLGLGIEMDKVAKATGLSEEEIRKLMN" gene complement(3385849..3385964) /locus_tag="Dhaf_R0070" /db_xref="GeneID:7260178" rRNA complement(3385849..3385964) /locus_tag="Dhaf_R0070" /product="5S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7260178" gene complement(3386105..3389016) /locus_tag="Dhaf_R0071" /db_xref="GeneID:7260179" rRNA complement(3386105..3389016) /locus_tag="Dhaf_R0071" /product="23S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7260179" gene complement(3389120..3389195) /locus_tag="Dhaf_R0072" /note="tRNA-Ala6" /db_xref="GeneID:7260180" tRNA complement(3389120..3389195) /locus_tag="Dhaf_R0072" /product="tRNA-Ala" /db_xref="GeneID:7260180" gene complement(3389423..3391083) /locus_tag="Dhaf_R0073" /db_xref="GeneID:7260181" rRNA complement(3389423..3391083) /locus_tag="Dhaf_R0073" /product="16S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7260181" gene complement(3391501..3391574) /locus_tag="Dhaf_R0074" /note="tRNA-Gly7" /db_xref="GeneID:7260182" tRNA complement(3391501..3391574) /locus_tag="Dhaf_R0074" /product="tRNA-Gly" /db_xref="GeneID:7260182" gene complement(3391585..3391661) /locus_tag="Dhaf_R0075" /note="tRNA-Arg5" /db_xref="GeneID:7260183" tRNA complement(3391585..3391661) /locus_tag="Dhaf_R0075" /product="tRNA-Arg" /db_xref="GeneID:7260183" gene complement(3391764..3392405) /gene="trmB" /locus_tag="Dhaf_3167" /db_xref="GeneID:7260184" CDS complement(3391764..3392405) /gene="trmB" /locus_tag="Dhaf_3167" /EC_number="2.1.1.33" /inference="protein motif:TFAM:TIGR00091" /note="tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(7)-)-methyltransferase" /protein_id="YP_002459626.1" /db_xref="GI:219669191" /db_xref="InterPro:IPR003358" /db_xref="InterPro:IPR004395" /db_xref="GeneID:7260184" /translation="MRLRRKAWARPELESDPKVIYNPMQYKENWQEAFGNNHPIHLEL GCGRGQFINQCAELNPHINYIAIDLYDEVLVKALRKINEKALHNVRVIPMNIAKLESI FKHDQIEKIYINFCNPWPSRRHHHKRLTHPQFLSVYKKLMKDHSEIWFKTDDDELFKD SLRYFAEEGFIEKYRTFDLHQSEFTENIKTEYEEKFSNQGVKIKFGIFEVNKG" gene complement(3392526..3393269) /locus_tag="Dhaf_3168" /db_xref="GeneID:7260185" CDS complement(3392526..3393269) /locus_tag="Dhaf_3168" /inference="protein motif:PFAM:PF01643" /note="PFAM: acyl-ACP thioesterase; KEGG: cth:Cthe_3072 acyl-ACP thioesterase" /codon_start=1 /transl_table=11 /product="acyl-ACP thioesterase" /protein_id="YP_002459627.1" /db_xref="GI:219669192" /db_xref="InterPro:IPR002864" /db_xref="GeneID:7260185" /translation="MSGYSKEYEIFYFQVDQFGEASVITILDFLEDCAIAHSEAVGLG IESLMELRTCWVLNRWRLEMERYPRLGEKVTIETLNTGFERFYGERMFTIRDSQGNII GKAGSLWIYLNIDKRRPTRIPLQFAAQYGVPERYEGKEPFEDLPEITDIHSEIRFHVR RSDIDTNGHVNNTRYVEWMLEGISEESLKDYRLQRLEVIYKKETPYGTDILSQGQGAK GAGLQYLHRVLDQSGERELACGRTVWTKR" gene 3393385..3394773 /locus_tag="Dhaf_3169" /db_xref="GeneID:7260186" CDS 3393385..3394773 /locus_tag="Dhaf_3169" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: drm:Dred_0599 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002459628.1" /db_xref="GI:219669193" /db_xref="InterPro:IPR001411" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7260186" /translation="MTYDHQFVRSTMIICLLTSFIGAFMSNSVNIAIPALSLDFTVTQ LHLNWVVTIYLLTSAALSIPCGRLADIIGRRKLFLIGIGLFCLSSLGCSLTPSFNVLI FFRLCQGVANAMIAGTSMAILTTVVPPQQRGKALGIASAAVYIGLSLGPVLGGLFVKL ISWRAIFAFGFAVDALILVLILTKLTGEWKAAAGEVYDYKGAALWISGLTLLLFALSN LALAPFYTLLLIAGLVLLGIFIRVELKTDSPIFALRIFAKNTPFVFSNLATAINYLAT FALGYLLSLYLQLILGLDSSLAGLILLSQPVLMALLSPFAGRLSDKIQPRILSSVGMA IVTAGLLPIIFFTSSTPIALIVADLVFIGIGYGLFASPNTNAVMSSVDKRYYSIASST LGTMRLLGQTLSMATVSLMTSHFIGNTSLYSPEYPQVFMISFKLSFILFTILCFLGIF ASLARGKKEQVQ" sig_peptide 3393385..3393471 /locus_tag="Dhaf_3169" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.711) with cleavage site probability 0.533 at residue 29" gene complement(3394767..3397124) /locus_tag="Dhaf_3170" /db_xref="GeneID:7260187" CDS complement(3394767..3397124) /locus_tag="Dhaf_3170" /inference="protein motif:PFAM:PF00158" /note="PFAM: cyclic nucleotide-binding; sigma-54 factor interaction domain-containing protein; KEGG: pth:PTH_2806 transcriptional regulator" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002459629.1" /db_xref="GI:219669194" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR002078" /db_xref="GeneID:7260187" /translation="MKEKLHLLSEVPFLADLSQQDRIECAHEFHWEIYPKGAVLIEAG KKPAAVYILEEGKLDSEDKVLGMVSLVTGKAATETIRALEPVRLLTIKAEDFARILLR WPQIYSTIIGNLTDNLAETHQMLSASRYKEVLRSAIQLTRYKDKFYGIWGSVKTTHEV ERLFKKLQQTEGHLLIRGERGTGRQMVAWYAHQQLFGEAAPFVVLNGQRFEQQWGYLL KEEKKAAESSYAAFTFEDIAAGGTLFIQEIDQITPELQIRLAQVLGTAHHSCLVIGSI QEDSKHKDPQLMPELAACFEHSYSIAPLRERKRDIPIIAQGIVESLAQKHQRNVPVLT SEATQLLLSHNYRQGNVTELIQVMERAFFLADQDVIGLEQIFFGPTAEKIGSKINLLQ WGFFKSLFKSRKLLHSLQWISAVLFLLLIVGLVFLPQLPLTMKVFVLVWGLWWPSLAI LSPLLGRLWCTFCPFSKIMEFVQDRYHPKRPLPALFVKYDYLMVSVLFALIFWAEIFT GMRSHMLFTALLLLVIQGLAIIVSVLYPRHAWCRHFCPLGGFIGTASIGSLLEVRADA AVCLNKCTTFDCYVGRDGVKGCPMSQHLPYLDNNLDCKLCFKCVSNCQHENVQVNLRV PAREVWHLTRVNQGYAVFIGMLMGILFPIMVFEPLHGSMPPSQWQLWFTLTYLLAALL GGALGWWLGKPFKTKAASKRIKLVFAFIPLIIGGHIVHQMGYIPGINHLFFGMGYHEE GGMQTLFIAAKSLGYGLAMLTGIFLTVITVGLTLHQYSKAKDPNH" gene 3397254..3398339 /locus_tag="Dhaf_3171" /db_xref="GeneID:7260188" CDS 3397254..3398339 /locus_tag="Dhaf_3171" /EC_number="2.7.1.2" /inference="protein motif:TFAM:TIGR00749" /note="KEGG: gbm:Gbem_2002 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="YP_002459630.1" /db_xref="GI:219669195" /db_xref="InterPro:IPR003836" /db_xref="GeneID:7260188" /translation="MPYAGIEKGQLYLAGDIGGTKTLLGLYSLEGTELVLVRERNFPS KDWQDLTALIQGFLDEIALTPEDITGGCLSLAGPITQDKCFLTNLNRVIDCPDLRSSL PLRRPLLLVNDLEAMGQGLMDLRGEDLICLNPSAESPSSSLASSPALSLARPSLNRAL IAPGTGLGQAMILADGRVCATEGAHGDYAPRTEQEVRLWRFLAQRYGHVSYERVLSGP GLADLYRFLYWEALSPSLPGPASDSIPAPDSSLTPAEITKKALDGICTLCTETLELFV KILGAEAGNLALRTLAYGGIYLGGGIPPKILPKLQEDGFMEAFLAKGRLRELLSQIPI YVILNERTPLLGAARLAVAAGYPFTCS" gene complement(3398389..3398760) /locus_tag="Dhaf_3172" /db_xref="GeneID:7260189" CDS complement(3398389..3398760) /locus_tag="Dhaf_3172" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459631.1" /db_xref="GI:219669196" /db_xref="GeneID:7260189" /translation="MNNTEIETKIKLIEENITMIGQTLGLIAEKLGVKHRFIYALFSG ISFQELDDMMSLIIAAKNSDILIGDLINNFNEKFPRHKNGIVQIIQCCKEEQMFLDFC NKFLNSPEVKRIMNSYPEVCD" repeat_region 3399370..3400868 /note="ISDha7" gene 3399438..3400609 /locus_tag="Dhaf_3173" /db_xref="GeneID:7260190" CDS join(3399438..3399689,3399689..3400609) /locus_tag="Dhaf_3173" /ribosomal_slippage /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_002459632.1" /db_xref="GI:219669197" /db_xref="GeneID:7260190" /translation="MSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTVRNW LKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDILKKGYRHLRPKQPEIIYQMI KKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQAMIG LDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLLNQK FKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEALRN AVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFFSTI KSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKAA" gene complement(3400852..3401106) /locus_tag="Dhaf_3175" /db_xref="GeneID:7260191" CDS complement(3400852..3401106) /locus_tag="Dhaf_3175" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459633.1" /db_xref="GI:219669198" /db_xref="GeneID:7260191" /translation="MFKTGFTKRLMALPLALIMVLSFAVSAFASTATPRVEVKADLNA ISQSQPAVKLSPITEETFSDRSVEPYGIKSWLTKQMTFSR" sig_peptide complement(3400852..3400941) /locus_tag="Dhaf_3175" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 30" gene 3402033..3402785 /locus_tag="Dhaf_3176" /pseudo /db_xref="GeneID:7260192" gene 3403411..3404076 /locus_tag="Dhaf_3177" /db_xref="GeneID:7260193" CDS 3403411..3404076 /locus_tag="Dhaf_3177" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: acr:Acry_3291 hypothetical protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002459634.1" /db_xref="GI:219669199" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7260193" /translation="MQNKLLNVKNLQTKGSGAAFLITGVFLTLLVAFLYFDRSSELSA VIQNLGAAGMLLAVMLMAVFCLTPIPSEGLVVVFLKIYGIYLGTFLAWLGCNLSTLVI FFAARHYGQIFFKKLLTPERFKLVDSWVNDKGTWGLFIARLLPLPAFIVNYAAGMIPS IKLWPYFWTAALAIIPYYVGTALVYLGITAKMWIWLVIGGAAILIFWSISYLLNRKSL KVG" gene 3404168..3405316 /locus_tag="Dhaf_3178" /db_xref="GeneID:7260194" CDS 3404168..3405316 /locus_tag="Dhaf_3178" /inference="protein motif:PFAM:PF06925" /note="PFAM: glycosyl transferase group 1; Glycosyltransferase 28 domain; Monogalactosyldiacylglycerol synthase; KEGG: drm:Dred_1966 monogalactosyldiacylglycerol synthase" /codon_start=1 /transl_table=11 /product="Monogalactosyldiacylglycerol synthase" /protein_id="YP_002459635.1" /db_xref="GI:219669200" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR007235" /db_xref="InterPro:IPR009695" /db_xref="GeneID:7260194" /translation="MSNLRVLVISAAFGAGHIKAAEAVIEAIWAKRPNTEIYHADFGA FLNKAFHLVIKTAYIDMIKYTPKLWGEFYYRTSDIPSDSLFQRFLNGLGRQEFISYIH SVQPDLIVCTYPTIAGVLAQLKEKRILTVPLAAVVTDYAIHNQWVHQGVDLYLVGSQE VADGLAQRGINPGCLKVTGIPVSPKFEIKLDREELARKFGLDPGQPTILVMGGAYGVL DNATGICRLIMQNKLPVQLLIVCGRDKRLYSTLEPLVRKAENRVLLFEFVENVEELMT VSDLMITKAGGLTVSEALTKQLPMVIYKPIPGQEKANSEFLRRVGTGKIAATEGELLQ ILTHLLENPEEIKLMSHAAAKLPRRTAETAADYLLELFRQRNRVRKVG" sig_peptide 3404168..3404230 /locus_tag="Dhaf_3178" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.946) with cleavage site probability 0.906 at residue 21" gene complement(3405332..3405934) /locus_tag="Dhaf_3179" /db_xref="GeneID:7260195" CDS complement(3405332..3405934) /locus_tag="Dhaf_3179" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459636.1" /db_xref="GI:219669201" /db_xref="GeneID:7260195" /translation="MKINDLTSARVISNNNRLQSNSQQYETLQINKISKQPPKWEQLL STDLPNVADPNTNSINIKEGEMKSIGTVDGIPLNIFFDSYGMNTNFSTAIHRDDPVNS DRNRFAFLLLDKYTTAQRAKADSLSGRFQMLYSVAKGDISVKQYNETDLGRGVASTAE FLTSLGIDVSKPFSFNNKSFVLDSEGSLHALLQSSQLSLQ" gene complement(3406023..3406487) /locus_tag="Dhaf_3180" /db_xref="GeneID:7260196" CDS complement(3406023..3406487) /locus_tag="Dhaf_3180" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bcl:ABC3543 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459637.1" /db_xref="GI:219669202" /db_xref="GeneID:7260196" /translation="MRVSMEYNPLLYSRTNINLSANQKTDVFFSLLEKSAPEQKEHVA TDIWEELSRSHNIRNASFREIQEISAKLYKAGQISLFDHGMLTFEPMLAPPGSLKANL HMTSFNADGRKDWIAEYEQRAQSDLKTGNPMGYVQNQKVVEILRHLFNDLDE" gene complement(3406599..3407072) /locus_tag="Dhaf_3181" /db_xref="GeneID:7260197" CDS complement(3406599..3407072) /locus_tag="Dhaf_3181" /inference="protein motif:COG:COG1136" /note="KEGG: bcy:Bcer98_2165 ABC transporter-related protein" /codon_start=1 /transl_table=11 /product="ABC-type antimicrobial peptide transport system ATPase component-like protein" /protein_id="YP_002459638.1" /db_xref="GI:219669203" /db_xref="GeneID:7260197" /translation="MQKNMEAIDCVLAFLQKISLSNSSIRQYKILEKNWDGIRSIKVN PICGNFSSMPPRTTLCRLFGAGFFRTYKEYIGIFAAMWLVLVPSLLFGGEQQRIALAR LFLKKCEIILADEPTGSLDAKNAQKIKRSGRKGYRTIEDPPRLWPCSEWIECPFT" gene complement(3407465..3407893) /locus_tag="Dhaf_3182" /db_xref="GeneID:7260198" CDS complement(3407465..3407893) /locus_tag="Dhaf_3182" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459639.1" /db_xref="GI:219669204" /db_xref="GeneID:7260198" /translation="MKKNKFFFITVLALSLMLLSLTILKAPDYINEIKPYLDIIHKLN LEYGLEGDSKIRLVQGEEQNFYSHVKNMSLKEYEKNARKAYEQALRIPTVIKSDPNSG IEYGYYLSDNYSYDNEIKEGKRIAAKKISHGLLNFSDYPE" sig_peptide complement(3407465..3407542) /locus_tag="Dhaf_3182" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.787 at residue 26" gene complement(3407907..3408245) /locus_tag="Dhaf_3183" /db_xref="GeneID:7260199" CDS complement(3407907..3408245) /locus_tag="Dhaf_3183" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bcz:BCZK0763 sensor histidine kinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459640.1" /db_xref="GI:219669205" /db_xref="GeneID:7260199" /translation="MWKIKHKNWALLLSNAIFVILCLVCLIGLLHHPYIGLVLENTEE AWTVVTVDPYGEGGSAGINEGDIILQIDGLAPELHPSVQKWHEIAGVSLLTVQTPGEA ARTVYMAQTD" gene complement(3408226..3409206) /locus_tag="Dhaf_3184" /db_xref="GeneID:7260200" CDS complement(3408226..3409206) /locus_tag="Dhaf_3184" /inference="protein motif:PFAM:PF00348" /note="PFAM: Polyprenyl synthetase; KEGG: gtn:GTNG_2065 pre-ComX modifying enzyme" /codon_start=1 /transl_table=11 /product="Polyprenyl synthetase" /protein_id="YP_002459641.1" /db_xref="GI:219669206" /db_xref="InterPro:IPR000092" /db_xref="GeneID:7260200" /translation="MGLIDDSISVEQQIAGGIERFLAESGSAGHLSGIVLEWVRAENK PGGKQYPWGNLLFTIGDVFGDSQETIVHGAVAMELYALAADIFDDIEDQDNDELPWRT IPAAQAINTANLILFLSFKALAAINDQALYRQANDIFQTMGITACHGQNQEFLYEGQD AITLAQYFDTARKKSGALTAGTCKLAAVLAGCDTSLILDLEKFGQNLGIISQIKNDLR DLFRVEAKSDVRLGKKTLPLVYLANVLKQNREKTEELHKLCSPARRKGAEFGTAETDR LRRFVIQEGAAHYCSVICACFKQEAVEILDTMNIAEEQKRKLIALVENQT" gene complement(3409197..3409397) /locus_tag="Dhaf_3185" /db_xref="GeneID:7260201" CDS complement(3409197..3409397) /locus_tag="Dhaf_3185" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459642.1" /db_xref="GI:219669207" /db_xref="GeneID:7260201" /translation="MNFDQLAKVVHELVQRQNNGETEALKSEAFQGMTMREQEAVIDG FSKLHLSGDSVAIGIGPYSQWA" gene complement(3409795..3410094) /locus_tag="Dhaf_3186" /db_xref="GeneID:7260202" CDS complement(3409795..3410094) /locus_tag="Dhaf_3186" /inference="protein motif:TFAM:TIGR02385" /note="TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: swo:Swol_1075 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module toxin, RelE/StbE family" /protein_id="YP_002459643.1" /db_xref="GI:219669208" /db_xref="InterPro:IPR004386" /db_xref="InterPro:IPR007712" /db_xref="InterPro:IPR012753" /db_xref="GeneID:7260202" /translation="MYEVKSTNRFKRDLKYIQRRGYDMRLLTAVIQTLASGEPLTEKH KDHALSGIWSKYRECHVTPDWLLIYKVEDDILVLTLTRTGIHSDLFGQGNCRQCL" gene complement(3410087..3410374) /locus_tag="Dhaf_3187" /db_xref="GeneID:7260203" CDS complement(3410087..3410374) /locus_tag="Dhaf_3187" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: tde:TDE0506 DNA-damage-inducible protein J, putative" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_002459644.1" /db_xref="GI:219669209" /db_xref="InterPro:IPR007337" /db_xref="GeneID:7260203" /translation="MIMADTTNITIRMDVELKKQAEQLFSELGMNMTTAFTIFLRQAV RQQRIPFDIALENPNAETIAAMEEAERVSRDPSVKGYTDIDQMMKELLADV" gene complement(3410396..3410599) /locus_tag="Dhaf_3188" /db_xref="GeneID:7260204" CDS complement(3410396..3410599) /locus_tag="Dhaf_3188" /inference="similar to AA sequence:KEGG:CCV52592_0926" /note="KEGG: ccv:CCV52592_0926 prophage LambdaSa04, RelE/ParE family protein" /codon_start=1 /transl_table=11 /product="prophage LambdaSa04, RelE/ParE family protein" /protein_id="YP_002459645.1" /db_xref="GI:219669210" /db_xref="GeneID:7260204" /translation="MENKYAVKLLPRVYRDLDGIYAYIAETLTEPVIALKLLDSLEEA IFSLESIPQRGALRKTGAYADRG" gene complement(3410589..3410855) /locus_tag="Dhaf_3189" /db_xref="GeneID:7260205" CDS complement(3410589..3410855) /locus_tag="Dhaf_3189" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002459646.1" /db_xref="GI:219669211" /db_xref="InterPro:IPR006442" /db_xref="GeneID:7260205" /translation="MPQIRPITDLRNTNDISDLCHAKKEPIFITKNGYGDLVIMSIET FDAMLEGRELDAAIAEAEAEYTSDNQLVDAREALSKLKRKHFGK" gene complement(3411183..3412796) /locus_tag="Dhaf_3190" /db_xref="GeneID:7260206" CDS complement(3411183..3412796) /locus_tag="Dhaf_3190" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459647.1" /db_xref="GI:219669212" /db_xref="GeneID:7260206" /translation="MMKTETGTVPAPLKLIPLLLMMSLLLTACSSVPSSAPSPAPESY DSETAIKSEDVYAHQQDFYTNQILNGKTEITPELMLFFHDYFSKNGNELRLLPEFAFG KAPAWDDLSQYIIFNAYEDFVDGSISEEKFDRQITRFFWPVIYTQKDGTGLIYENGKY TIRYGSDAHGWAIYELTGLKNKGKTERGPDKWEATIRGYFFAELDSDPAEEGYSENGK AVWTAMKKAENKGLTFWQVQDSLVLKNPGSILELGCEWTIEFTVNDPEGDIHFTYMSC SRSPKDEQVPPQQALPDIYLFQQYPSGYEFIKTVCDLRGEAAITNELREKFNLFARDY RWCYMPDMDGYESFFDTGYSYANSLGHANFADAVFYALSYLRFPEKVSAPTVQSTIAA LFVAKDGVHQPMPHQAYGKTANYADGYYSPWPEGTPDFDRMFFLLTGLKVEEQESGEV YITVQATEYYFAHPSYIPGENEKWLAEKAKELDLSDMEAAAKLIAENKMDGIKGAKEY ETTLVYMMKNTVPVDYAPRVVFSRSRSIE" sig_peptide complement(3411183..3411290) /locus_tag="Dhaf_3190" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.984 at residue 36" gene complement(3412823..3413479) /locus_tag="Dhaf_3191" /db_xref="GeneID:7260207" CDS complement(3412823..3413479) /locus_tag="Dhaf_3191" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459648.1" /db_xref="GI:219669213" /db_xref="GeneID:7260207" /translation="MTKKRLIIAGVIIAVIVAIIVLMRLNNLNSIPMHLKEEKEIGLE LDFHYDWADIEPYSYGNRERLTLPQLTVSWNWKKDNGVIKEDLEDLLKDDTLLIFGDF FPAWVIGGVTRPAYFGSGGSISFSAVEKIKLMNGITWADSQRLSDVKEIRIPMSKSGS IRIHLFAEHGNTVNPPDSLNIYYLHSQKKLLTGYSTVVVQKEVKFSGDLSGLVTGSNS" gene complement(3413533..3413730) /locus_tag="Dhaf_3192" /db_xref="GeneID:7260208" CDS complement(3413533..3413730) /locus_tag="Dhaf_3192" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459649.1" /db_xref="GI:219669214" /db_xref="GeneID:7260208" /translation="MDKELSAQEADREKVLDALMEYAAKCYMDYMLARVDEEKEKFYQ EHTFPAELDVRMEKFFREFDP" gene 3413790..3413951 /locus_tag="Dhaf_3193" /pseudo /db_xref="GeneID:7260209" gene complement(3414018..3415619) /gene="pgi" /locus_tag="Dhaf_3194" /db_xref="GeneID:7260210" CDS complement(3414018..3415619) /gene="pgi" /locus_tag="Dhaf_3194" /EC_number="5.3.1.9" /inference="protein motif:PRIAM:5.3.1.9" /note="functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate isomerase" /protein_id="YP_002459650.1" /db_xref="GI:219669215" /db_xref="InterPro:IPR001672" /db_xref="GeneID:7260210" /translation="MVIITSWKRFKEYLYYDQELELLLDISRMNFSAEFLTELAEPMR DAYHQLQLLEKGALANPDEGRMVGHYWLRNPDLAPTEEIAQDIKETLKEILDFAEQIH SGRLQGEKGNPFRNILLVGVGGSILGPRFVADALASSRDKMKAFFIDNGDPDGIDRVL SRIGEELPATLCLIISKSGGTIETRNGMLEVRRAYEEAGLSFPDHAVAITQRGSQLDK LSQKEGWLRAFPMWDWVGGRTSLLSAVGLLSLALQGIDVAGLLQGAKDCDGRTRRPDT LANPGALLALMWYYSTQGQGGKQMVVLPYKDRLELFTKYLQQLIMESLGKEKNLQGET VHQGITVYGNKGSSDQHSYLQQLLEGPDNFFVTFIEVLKDRQGSSAYMEENSTSGEYL QAFLLGTREALTQKGRESLTITVKEVNAYTIGVLIALFERAVSIYALLVGINAYHQPA VEMGKKAAGQAIQLKNNIVECLKKHPDKRFSVHEIALAIGEEAHQEMVFKLLLHLTTN PEHGVNMAAGHPLPESRFFVSGPIL" gene complement(3415818..3419399) /locus_tag="Dhaf_3195" /db_xref="GeneID:7260211" CDS complement(3415818..3419399) /locus_tag="Dhaf_3195" /inference="protein motif:TFAM:TIGR00217" /note="amylomaltase; acts to release glucose from maltodextrins" /codon_start=1 /transl_table=11 /product="putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme" /protein_id="YP_002459651.1" /db_xref="GI:219669216" /db_xref="InterPro:IPR003385" /db_xref="InterPro:IPR006047" /db_xref="InterPro:IPR006589" /db_xref="GeneID:7260211" /translation="MVLAYHNSHDPFFRSPFGAVPCGGLLRLRLLMQPEDSSGAGSPV QECFLRLWVQDREERLPMLRVEEPILWEINREGTVTGEEAITGEGVLTGEGVVYEVEY PLPHEPGIIWYYFIFRAGGETCFYGNNQEELGGVGELRSSEPPGYQITVYRPMALPGW YTQGIMYQIYVDRFFNGDEQGKVLNPRPRSLIHGDWSDTPFYIKNEKGEVLRWDFFGG NLAGVIKKLPYLKELGVSILYLNPIFDSSSNHKYDTGDYLTLDPMYGDEEIFAQLIKE AQSLGIAIILDGVFSHTGDDSIYFNRYGRYPGLGAYQSPDSPYYSWYQCHGEGQEKEY SCWWGVSTLPEVWEMEPSYREFIIHSPQGVLQSWMKRGIKGWRLDVADELPDEFIQEF RQMMKTMDPEGVLIGEVWEDPTHKFSYGKLRQYFWGEELDATMNYPLRNIFLQYFLGQ IDAGQAHKRIMNLYENYPRENFFGQMNLIGSHDRARILTLLGEAPPPEQLSAVEQEQY RLPAPARDLAVQRLKLLTLLQMSFPGVPCLYYGDEAGCEGYPDPYNRGTYPWGREDQE ILQWFKRVLRYRREYEVLRQGEFSSWFEGKEIYVLQRKGEKEEIIVLVNRSAEESTEM TLKLEQNVGQVIDIFAGEVLHSLSLILPPLSAKALFYQKYERGHYFKQEIMTRACGIL MHISSLPSPWGIGDLGEEAYAFVDFLAEGGQSLWQVLPLNPLGLGDSPYQSESALAGN FLLISLDLLIEAGLLTEGEARREWADYGQEVKKTEGSEGSEGSEGSEGSEGLGSEGFA WVERYKEKLLRKAYERFKEKLPRYPLDLSSPEGGSQPGTKGYLDPQGYDRFIEENQDW LQDYALYKCLKLKFPGKAWHQWEESYRLRKPEALEAVTEDYAEEINYIFFVQYTFADQ WQRLKDYAQEKGVKIIGDLPIYVAYDSCDTWANRECFALDENNAPAGTAGVPPDYFNP EGQNWGNPLYDWDALRAADYAWWKLRFRQGLERFDALRLDHFRGFEGYWEVPPQAGSA KEGRWLKGPGKEFFESLVRELGPLPVIAEDLGCITPEVNTLRAILGFPGMRVTQFSPL QQEGNYVDYSGTHDNDTLLGWYRSQGYSDKDSLAQVERTIEELYQGNGIWVIFPLQDI LKLDSRARMNTPGTIKGNWQWRVERGTLTQEVCARLRGLAEKYGRLS" gene complement(3419417..3420820) /locus_tag="Dhaf_3196" /db_xref="GeneID:7260212" CDS complement(3419417..3420820) /locus_tag="Dhaf_3196" /inference="protein motif:TFAM:TIGR02095" /note="TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: gtn:GTNG_2779 glycogen synthase" /codon_start=1 /transl_table=11 /product="glycogen/starch synthase, ADP-glucose type" /protein_id="YP_002459652.1" /db_xref="GI:219669217" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR011835" /db_xref="InterPro:IPR013534" /db_xref="GeneID:7260212" /translation="MKVLFAITEAEPFVKTGGLGEVGRYLPLALQEQGVEIRVILPQY SSIPRNYLQKMKTIKEFTVPLAWRNQYCGLKELKYEGIHYYFLDNEYYFRRSRCYGDG DEGEQYAYFSRAVLESVRYLPEFKPDIIHCHDWHTALVPLFLKAFYAQDTLYYNIKTL FTIHNLKYQGIFPREVREDVLGLSGELSSSAQLEFYGGVNFMKAGIMHSDQVTTVSPT YAREIQHPYFGEGLHGVIQGRKDSLLGILNGVPRPWPSPTLADKRANRMKLQEQLNFT NNEEIPILSMISRLVEQKGLDLLLHVLDEILALDIRLVVLGTGDAHYEERLQRFAEGY PGKLRVILGYQEELAHRIYAGADIFLMPSRFEPCGIAQMIAMSYGTIPIVRETGGLKD TVRPYSPISGEGNGFTFTDYNAHELLYAIQKAVEMFRNQKDTWQKLQENALSSDFSWN RSAARYRDVYESLYYSS" gene complement(3420858..3421976) /locus_tag="Dhaf_3197" /db_xref="GeneID:7260213" CDS complement(3420858..3421976) /locus_tag="Dhaf_3197" /EC_number="2.7.7.27" /inference="protein motif:TFAM:TIGR02092" /note="TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; KEGG: csc:Csac_0782 glucose-1-phosphate adenylyltransferase, GlgD subunit" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate adenylyltransferase, GlgD subunit" /protein_id="YP_002459653.1" /db_xref="GI:219669218" /db_xref="InterPro:IPR011832" /db_xref="GeneID:7260213" /translation="MTNAIGMIFGNLNSSALQGLDPNRPIGTVPFGGRYRLLDFALSS MVNSGIHTVGLITPQQYRPMLDHLGAGRDWSLDRKSGGLFFLPGVIHSLNHTVHFSLQ DIAVNIDFLEKDCAKNIIISSSDQVFNLDFRPVLEEHEQAQADITLVYNQSVHPPEGS ERIYLRMNAHKKVTAMSKSKEVAGLQSPWNYFIDILIIRRELLLQMLRGYGSIGTIEL SEVIAHHLDIINVQGYFCGGYVGRIRSVQDYFLNNMALLQEEVRRDLFINTRPIRTKI RDNPPTKYGKQAQVKNSLISSGCTLEGKVENTILSRGVVIEEGCEVRNCIIMSKCVIG KHSVLENLIMDKFVEINEGSVLKGQPNKLMVIPKKAVI" gene complement(3421991..3423187) /gene="glgC" /locus_tag="Dhaf_3198" /db_xref="GeneID:7260214" CDS complement(3421991..3423187) /gene="glgC" /locus_tag="Dhaf_3198" /inference="protein motif:TFAM:TIGR02091" /note="catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate adenylyltransferase" /protein_id="YP_002459654.1" /db_xref="GI:219669219" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005836" /db_xref="InterPro:IPR011831" /db_xref="GeneID:7260214" /translation="MRKKECIAMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSL SNCSNSNIDTVGVLTQYKPFALNTYINMGSAWDLNCLNGGIHILPPFVGEAQGSWYKG TANAIYQNMDFINFYNPEYILILSGDHIYQMDYYEMLSCHKQKHAEVTLSAIAVPWEE ASRFGVMVTDAGGRIIRFEEKPPRPESNLASMGVYIFNWDVLKEALLEDERDPQSDHD FGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVDKFFELKQRVF SNEEILAPQHLGERAKIHNSLIGNGCTILGEVRDSVIASGVYVGEGSLIEQSILLPNS EIYEDVRLHKTILGENAIVRAHCRIGDKREGNPPQEGITVIGDHLHIPEGTVISEGEN VRKDTA" gene complement(3423225..3425660) /locus_tag="Dhaf_3199" /db_xref="GeneID:7260215" CDS complement(3423225..3425660) /locus_tag="Dhaf_3199" /EC_number="2.4.1.1" /inference="protein motif:TFAM:TIGR02093" /note="KEGG: cbt:CLH_3165 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35" /codon_start=1 /transl_table=11 /product="glycogen/starch/alpha-glucan phosphorylase" /protein_id="YP_002459655.1" /db_xref="GI:219669220" /db_xref="InterPro:IPR000811" /db_xref="InterPro:IPR011833" /db_xref="GeneID:7260215" /translation="MFSDKNGFKDAYLEKFAEIKGKSIEEGTLWDKYHTLVVLLREEI SLSRAFINYADPKNRPAKQVYYFSMEFLIGKLLHNYLINIGIQDIVAEGLEELNIDLQ ELLAQECDAGLGNGGLGRLAACFLDSMAFLGIAGHGNGIRYKYGLFEQKIVNGYQTEV ADHWLKNGYPWEVRKPDKSVVIKYKGKVRVENIDDRLVFHHENYEPVLAVPYDIPIVS YENPFLVNNLRLWSAEPLSSELDLALFNQGNFTQALSNKSEVEAISYILYPEDSNLAG RELRLKQEYFFVAAGLATIVRNYKKNHGSLRDFSQGVSIHINDTHPALCIPELMRILI DEEGMDWEESWNITVDAISYTNHTIMPEALEKWPLDLFRNLLPRITMIIEEIDRRFKE KLLRRFFNSEELFRSTPIIKEGQIYMANLAMIGSHSVNGVAKLHTEILKKHVFKDFHR IFGYKFTNLTNGVNHRRFLLTANPLLSELITEGIGPGWKTNAGELAELHRFKEDSAFL DRLAQVKYQNKLRLAEIIAMGQGIQIDPHSLYDVHVKRIHAYKRQLLNVLKVMDLYNR LLADPGSVQGTYTFIFGGKAAPGYHYAKSIIKLIHVIADKINQEPRIKEQLKVVFMEN FNVSSAERIYPAADLSEQISTAGKEASGTGNMKFMMNGALTIGTLDGANVEIREAVGE DHIFIFGLTAEEILAHNLNRTYRSWDEYHANPCLENILEQLISKQFMENDWEFRTVYD SLLLYNDEFFVLKDFAAYMKTFGEAADRYAAQEQWLRSSLHNIAESGVFSTDRTIREY AHQVWRVRCRRMD" gene complement(3425719..3427665) /locus_tag="Dhaf_3200" /db_xref="GeneID:7260216" CDS complement(3425719..3427665) /locus_tag="Dhaf_3200" /inference="protein motif:TFAM:TIGR01515" /note="catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain" /codon_start=1 /transl_table=11 /product="glycogen branching enzyme" /protein_id="YP_002459656.1" /db_xref="GI:219669221" /db_xref="InterPro:IPR004193" /db_xref="InterPro:IPR006047" /db_xref="InterPro:IPR006048" /db_xref="InterPro:IPR006407" /db_xref="InterPro:IPR006589" /db_xref="GeneID:7260216" /translation="MAWVGEDNALQVQDIKMQSKIQKDSPLLTQEEMYLFNCGEFYYS YRKLGAHFLEHKGRWGTYFAVWAPQARQVSVVGDFNGWCGMNHSLQKWEEQGIWTLFI PGLPTGEIYKYEILNSSGESVLKADPYAFFSEVRPHTASVIYSLEDYAWGDQAWLAQR KTRNPKVLPLSSYEIHLGSWRRTEDGRFLNYAQLVTVLIPYVKSLGYTHIEILPLMEH PYDGSWGYQITGFYACTSRYGTPHDLMYLIDQCHQAGIGVILDWVPGHFCMDAHGLGK FDGSPLYEREVHEQWGTYKFDYSRSEVRSFLISNAVFWLDVFHVDGLRVDGVSSMLYL DYGKEKGAWQPNRYGGRENLEAVGFIKQLNATLHGLYPDALLIAEEATDWQGVTGPLD QEGLGFTFKWNMGWMNDTLRYIGLDFNERRSFHQLLTFPMMYAYAESYILPLSHDEVV HGKKSLLDKMPGDYGQKFAGLRGLTTYFMTSPGKKLLFMGGEIPQFIEWREDRELDWF LMDYELHRKYHGFVQQLNGLYLREKALWEIDGDWTGFEWIDVHNHEQGVIVFCRKGKS FQDRLVVLINFQPYNYERYRIGVEMAKGYREILNTDSTDFGGWGMTNPGLLKVEGVPW HGREFSLEIRVPALGAMILKPELA" gene 3427910..3428434 /locus_tag="Dhaf_3201" /db_xref="GeneID:7260217" CDS 3427910..3428434 /locus_tag="Dhaf_3201" /inference="protein motif:PFAM:PF02559" /note="PFAM: transcription factor CarD; KEGG: drm:Dred_3244 CarD family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CarD family" /protein_id="YP_002459657.1" /db_xref="GI:219669222" /db_xref="InterPro:IPR003711" /db_xref="GeneID:7260217" /translation="MFQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNME IMIPVGKAEDLGIRQVVNSEVVDDVLRFFFEGDTDPVMFESNNRFYRDINKKKMKSGD IYQESEIIRDLTRKSNLHKLGMEDNNMLHTALQLVTSEIVQVKGVEMEKAVEMLQSVI NQAKDEKEKQEALG" gene complement(3428631..3431870) /locus_tag="Dhaf_3202" /db_xref="GeneID:7260218" CDS complement(3428631..3431870) /locus_tag="Dhaf_3202" /inference="protein motif:TFAM:TIGR01369" /note="TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: hmo:HM1_1434 carbamoyl-phosphate synthase, large subunit" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase, large subunit" /protein_id="YP_002459658.1" /db_xref="GI:219669223" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR003806" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005480" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005483" /db_xref="InterPro:IPR006275" /db_xref="InterPro:IPR011607" /db_xref="InterPro:IPR011761" /db_xref="GeneID:7260218" /translation="MPLNPAWKKVLVIGSGPIVIGQAAEFDYAGTQACKALREVGIEV ILVNSNPATIMTDEQMADRIYLEPLLPQNLEGILAQERPDALLPTLGGQTGLNLAMKL QEEGILERYGVALIGCNAETIYKAEDREAFKETMLEIGEPLAESAIVTSLEEGLAFTA RRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQASPIHQCLLERSVAGWKEIEY EVMRDAMDNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDGEYQMLRSSSLKIIRALG VNGGCNVQFALDPESREYVVIEVNPRVSRSSALASKATGYPIAKMAALLAVGFTLPEL RNPVTGHTSACFEPALDYVVVKFPRWPFDKFPAADNHLGTQMKATGEVMAIDRTLEGA LLKAVRSLEIGAVGLRIADSGRWTEMEIEHKLAQADHERFFAIAEAFRRDWTILEVQM LTKIDPFFLNKLKELVLLERRLGSEPLTLELLRSAKSQGFSDQAIGRLRGVTQEEIRQ ERCRYGLKPVYKTVDTCAAEFYSSTPYYYSTYEEEDEVAVHSGPKVIVLGSGPIRIGQ GIEFDYCSVHALWALQELGIESIMINNNPETVSTDFDTGDKLYFEPLTLEDVLHIIEK EEADGVLVQFGGQTAINLASPLQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQS EGCAATSVSQARAIAGELGFPVLVRPSYVIGGRAMQVVEDLAELEGYLTRAITLSPEH PILVDRYLEGKEVEVDAIADGEITVIPGIMEHIERAGVHSGDSLAVYPTQSLTPAEIQ QIQDYTCRIAKGMEVRGLLNIQFVVVNGKVYVIEVNPRASRTVPILSKVTGIPLVALA VRVAMGEKLADLGYAHGLAPEIPFVVVKAPVFSFEKLTQVETSLGPEMKSTGEVLGMD VNFGHALAKAFAASHVPLPDKGDILVAVAEKDRPEAIAMTRELSRLGFGVKATGNTAK ALLFCGVPLEEVREASTELKEAVRRQEFSFVLSTPSKGDSEERTGYLLRRLAAEHRVP CLTSMDTAQAVVRALKEIRNHTAPQTLPLQAYLAMKRSTVERSTPIPNA" gene complement(3431860..3432966) /locus_tag="Dhaf_3203" /db_xref="GeneID:7260219" CDS complement(3431860..3432966) /locus_tag="Dhaf_3203" /inference="protein motif:TFAM:TIGR01368" /note="TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: drm:Dred_1683 carbamoyl-phosphate synthase, small subunit" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase, small subunit" /protein_id="YP_002459659.1" /db_xref="GI:219669224" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR001317" /db_xref="InterPro:IPR002474" /db_xref="InterPro:IPR006220" /db_xref="InterPro:IPR006274" /db_xref="InterPro:IPR011702" /db_xref="GeneID:7260219" /translation="MQAALVLENGKIFRGESFGAGGEIQGEVVFNTGMTGYQEVLTDP SYKGQMVCMTYPLIGNYGINSLDNQSPQIQVQGFIVKEAARNPHHWQLEKNISRALAQ AGVVGIKGIDTRALTRIIREHGVLRGMITTELGELDQKALELKNWEIPQDAVAQVSTR ETYKLPPLGKTDSRKPFHVVVMDFGIKSSILRAMQEEGYALTVVPYSASAQEIIALKP DGVFLSNGPGDPKDVAVGIKTIGGFVNKLPVFGICLGHQLLTLALGGDTYKLKYGHRG GNQPVQDLRTKKVHITSQNHGYAVAEGSLADTLLEVTHLNLNDQTVEGVRHKELPVFS VQYHPEAGPGPNDSLYLFKEFSTLMTEWRIHHAT" gene complement(3433219..3433752) /locus_tag="Dhaf_3204" /db_xref="GeneID:7260220" CDS complement(3433219..3433752) /locus_tag="Dhaf_3204" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459660.1" /db_xref="GI:219669225" /db_xref="GeneID:7260220" /translation="MVSTIKDSGGDRVKRSKGFILLLSALVIASGLALYKFYPVLEAL GYNKSISVSAVKLFMTEEALINTMDEKAEFVYGMGGNGWRFSDSGIFVMTSSLGLFKN RVALIDTENTSHSILGIKVGDNWDSAVTCLKKRGFKEFSHDMYTKGNVEIQLSGGSKI SGLRIRIADPAYKDVQF" gene complement(3433736..3433930) /locus_tag="Dhaf_3205" /db_xref="GeneID:7260221" CDS complement(3433736..3433930) /locus_tag="Dhaf_3205" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459661.1" /db_xref="GI:219669226" /db_xref="GeneID:7260221" /translation="MNPIHTDYTLLIQTISFLALVLFIGLLISIPLVLRKRKKDQEIL GKLDRVIDILEREKNNGKHH" gene complement(3433978..3434625) /locus_tag="Dhaf_3206" /db_xref="GeneID:7260222" CDS complement(3433978..3434625) /locus_tag="Dhaf_3206" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: swo:Swol_1734 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459662.1" /db_xref="GI:219669227" /db_xref="GeneID:7260222" /translation="MEEKDLKVRLLLAILIGIAFFTTGCTKPTDLNELIGMSKNIQEL YYEERNSGEVIFDGKVWAKDNQFKYEVTIYSNNEKIDTLGLLTDNSGKNIIYRIQNPN ASSAPSTGISGRFQGIREDSFLRYIDGIDPQKAEIVGTEEVEGRQSVIVKTNAADGAE PSKLWIDKKTGVPTKIEFAENEKIVTSLTYRNIKIGPGSVSDKELVVPESAIVLE" gene complement(3434628..3434960) /locus_tag="Dhaf_3207" /db_xref="GeneID:7260223" CDS complement(3434628..3434960) /locus_tag="Dhaf_3207" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mac:MA1944 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459663.1" /db_xref="GI:219669228" /db_xref="GeneID:7260223" /translation="MFIVNSADYTILVIGVMGALLAFAIQFILCFKAKHIAVKCIPIY VALLGGAYCLALWAGLLGSYSARAISGNQLVALILGVVLGIASSGIGIAWILYGVISR IRNKQELR" gene complement(3435020..3435814) /locus_tag="Dhaf_3208" /db_xref="GeneID:7260224" CDS complement(3435020..3435814) /locus_tag="Dhaf_3208" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_3502 predicted penicillin binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459664.1" /db_xref="GI:219669229" /db_xref="GeneID:7260224" /translation="MKPKEGLKPIGSFLNSCRKGIESVLNYKRPAFWIMIAAAFICIG VLGIHAVNPRIYNYADASDETVGSAQQIHGNRTEYAGSDGGEVAEATVPESAIYSPDG NWAVWSNVQENLRDENGLFYSIYQVLLYHTQTGKVTIFDIVGGYFDFLWSENSRFLAV TYSGREWTHFSIVDTITLTETPGPYRASVLEQLKAQGERLDYTANETRPDPVLTPVEW FPDSSKVLVSYQWRDTSYMTQSGTFVYEVESGRISGLSQNSPHQDG" gene complement(3435814..3435984) /locus_tag="Dhaf_3209" /db_xref="GeneID:7260225" CDS complement(3435814..3435984) /locus_tag="Dhaf_3209" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459665.1" /db_xref="GI:219669230" /db_xref="GeneID:7260225" /translation="MGDIIMVYIIPMIILFIIYYKVFRIADDVKEIKRMLENSGKSET NKKDCSCSGRQQ" gene complement(3436285..3437199) /locus_tag="Dhaf_3210" /db_xref="GeneID:7260226" CDS complement(3436285..3437199) /locus_tag="Dhaf_3210" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS0521 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459666.1" /db_xref="GI:219669231" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260226" /translation="MSEIIIRNLSEESMEETVKFISSCQTVDESFIAWLGYSPEEIKS QLMDLTPSFTESCLIAIDGGVICGFLGIYISEEQSTLRLLGPYVSKQKSWTEIALDLL SAFKTKIPTNINLAKVAFYDANMNCKRVYEANHFNVYNAEKTLIRDKKSLSNVSEVSN QKINVRDYKSSDFNDFIKLHPGTAYFTGPEVISKLNHDNRLIVAETDNHVIGYVYFEM LRGDGYAEICFLNVSPEFRSRGIGSQLINQVILEAFKNDWVNHIQISVRVNNKEAERL YTRMGFNEENVIIALQRDLEVYPWDDFT" gene complement(3437471..3439309) /locus_tag="Dhaf_3211" /db_xref="GeneID:7260227" CDS complement(3437471..3439309) /locus_tag="Dhaf_3211" /inference="protein motif:PFAM:PF00884" /note="PFAM: sulfatase; KEGG: cac:CAC2802 phosphoglycerol transferase" /codon_start=1 /transl_table=11 /product="sulfatase" /protein_id="YP_002459667.1" /db_xref="GI:219669232" /db_xref="InterPro:IPR000917" /db_xref="GeneID:7260227" /translation="MPVLQYESIKRNLRPIIDLVPDPFWWGSFIIGYIKVIAFMGLTT SWNNSWEFYFVNNYAVSSVIALCFTLLFFSVPLLFKGRSRLWVTWVFSAILAFLLFAD LVYYRGYGDFLTLHLIAQLANLEDLGGSIVSLIYLTDALFFIDCLLGLLLLIVKRESG KEIRRQIPWFLLICVLAVGFIYSAHYRYDRVENGQNQIVFRICWTPTDTMRNLSPVGY HFYEGYVYFKENQVIELTPEQEEEIENWYVQHQEDSPADQYQGIFAGQNLILLQVESL ENFVINQSYNGQEITPTLNRLVQDSIYFPNFYEQVWNGTTSDAELLTNASVYPVRRGS TFFRYPLNEYNSLPKLLAEKGYTTQASHPDNAGYWNWVQALSAMGFANTLDITDFGMD EKIGLGLSDGSYLRQMLPILEQSEQPFYDFIITMTSHGPFDLPQEYRELEIEPQLDRT KLGGYFQSIRYVDKQIGMFIESLDQKGLLDNTVIVIYGDHEGIHKYYNDELAGIQPQE DWWMENDRKVPLIIYKKDMGPKVIETTGGQIDVLPTVAYLMGIEEEKYAGTAQGRNLL TTQRDYAVLADGTFVGTSKELEDHAIKGLTLSDLIIQSNYFDQKEK" gene complement(3439523..3440065) /locus_tag="Dhaf_3212" /db_xref="GeneID:7260228" CDS complement(3439523..3440065) /locus_tag="Dhaf_3212" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459668.1" /db_xref="GI:219669233" /db_xref="GeneID:7260228" /translation="MKKAIVFITLSLIILLLAGYQPNKSIGVRNIEGLLLELYQVENT KDYQELREKQNQYLQEVRELMPTKTGILTMDPEDFEELFKPYLAKYKRYCTEAAWQGL LKNRYISKFDQLAWEEECRFYVKDIQIKKDQGRQYYYTVEVEKRAKDGTSQEKNGEGI VQLNEDGYVDLFKVTKRVDF" sig_peptide complement(3439523..3439579) /locus_tag="Dhaf_3212" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.712) with cleavage site probability 0.404 at residue 19" gene complement(3440149..3440487) /locus_tag="Dhaf_3213" /db_xref="GeneID:7260229" CDS complement(3440149..3440487) /locus_tag="Dhaf_3213" /inference="protein motif:PFAM:PF01521" /note="PFAM: HesB/YadR/YfhF-family protein; KEGG: mbu:Mbur_1787 HesB/YadR/YfhF" /codon_start=1 /transl_table=11 /product="HesB/YadR/YfhF-family protein" /protein_id="YP_002459669.1" /db_xref="GI:219669234" /db_xref="InterPro:IPR000361" /db_xref="GeneID:7260229" /translation="MVKISELAAQKVKEVQKTQNKEKCYLRLYLAGFGCGGPSFGMTL EDAKTELDVLDEEHGVSVITASSLSEYLEDAFIDFVENEEGSGFEIRLAKDFGGQGCG SSCGGCGGSC" gene complement(3440717..3442228) /locus_tag="Dhaf_3214" /db_xref="GeneID:7260230" CDS complement(3440717..3442228) /locus_tag="Dhaf_3214" /EC_number="1.1.1.205" /inference="protein motif:PRIAM:1.1.1.205" /note="catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate" /codon_start=1 /transl_table=11 /product="inosine 5-monophosphate dehydrogenase" /protein_id="YP_002459670.1" /db_xref="GI:219669235" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR001093" /db_xref="InterPro:IPR015875" /db_xref="GeneID:7260230" /translation="MALFFDEPSRTFGEYLLVPGYSSTACVPANVSLKTPVVKFKKGE QSSIIMNIPLVSAIMQSVSDDKMAIALAKEGGIAFIYGSQTIENQAQMVSRVKNHKAG FVISDSNVKPEDTLADILALKEKTGHSTVAVTDDGTANGKLVGLVTSRDYRVSRMSTD TKVGEFMTKFEDLICADEKTTLKEANDIIWEHKLNSLPLIDKDQRLKTMVFRKDYDSN KENENELLDASKRYVVGAGINTRDYAERIPALVNAGADVLCIDSSEGFTEWQKITIDW VREHYGDQVKVGAGNVVDREGFLFLAKAGADFVKVGIGGGSICITREQKGIGRGQATA VIEVAKARDEYFAETGIYVPICSDGGIVHDYHMTLALAMGADFIMLGRYFARFDESPT NKVNINGSYMKEYWGEGSNRARNWERYDMGGDKKLSFEEGVDSYVPYAGSLKDNVTLS LNKVRSTMCNCGVLAISDLQEKARITLVSATSIVEGGSHDVVLKDNNMVEYMK" gene complement(3442317..3442748) /locus_tag="Dhaf_3215" /db_xref="GeneID:7260231" CDS complement(3442317..3442748) /locus_tag="Dhaf_3215" /inference="protein motif:PFAM:PF02639" /note="PFAM: protein of unknown function DUF188; KEGG: swo:Swol_1505 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF188" /protein_id="YP_002459671.1" /db_xref="GI:219669236" /db_xref="InterPro:IPR003791" /db_xref="GeneID:7260231" /translation="MKILIDGDACPKAVLQICLKKGRQYGIPVWTVASFNHEIASDHH IVVGNAPQETDLKVVNLSEAGDIIVTQDIGLAAMVLGKGARALSPTGKEYRPESIANL LEERELKAKYRRSGGRTKGPSKRTPVEDQLFEEILLRLLQG" gene complement(3442745..3443338) /locus_tag="Dhaf_3216" /db_xref="GeneID:7260232" CDS complement(3442745..3443338) /locus_tag="Dhaf_3216" /inference="similar to AA sequence:KEGG:Oter_3522" /note="KEGG: ote:Oter_3522 HD superfamily metal-dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="HD superfamily metal-dependent phosphohydrolase" /protein_id="YP_002459672.1" /db_xref="GI:219669237" /db_xref="GeneID:7260232" /translation="MISERMERQLDFIVAIDALKDITRQSITTGSRRQENDAEHSWHL AVMAMILSEYAEDQTIDIAKVISMVLIHDLVEIYAGDTYCYDEKGYEDKAEREQEAAD RLFNMLPEDQAQRMMSLWQEFEEMETKEAAFAATLDRFQPLLLNYNTEGHTWQRPGIT SEKVLKRTEIAKEKVPQLYVYIERLIQRSIERGMLKP" gene complement(3443352..3444053) /locus_tag="Dhaf_3217" /db_xref="GeneID:7260233" CDS complement(3443352..3444053) /locus_tag="Dhaf_3217" /inference="protein motif:TFAM:TIGR00364" /note="TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cth:Cthe_3105 ExsB protein" /codon_start=1 /transl_table=11 /product="exsB protein" /protein_id="YP_002459673.1" /db_xref="GI:219669238" /db_xref="InterPro:IPR004479" /db_xref="GeneID:7260233" /translation="MKKAVVLLSGGLDSTTCMSVAHKAGYELYPLSFDYGQRHQRELE AAKAVAQYYKVKEHRLIKIEHVGGSALTDASIQVPDYTEDGQIPVTYVPARNILFLSY ALGYGEVIGAEAIFIGISSVDYSGYPDCRPEFLQAFQKVVDVGTKAGVSGQTIAIKAP LLYLSKGETIQLAAENGAPLHHTTSCYRGGEKACGTCDSCTLRLKGFAEAGIKDPIDY VNQGDRSCFSTPLED" sig_peptide complement(3443352..3443423) /locus_tag="Dhaf_3217" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.671) with cleavage site probability 0.541 at residue 24" gene complement(3444097..3444609) /locus_tag="Dhaf_3218" /db_xref="GeneID:7260234" CDS complement(3444097..3444609) /locus_tag="Dhaf_3218" /inference="protein motif:PFAM:PF02592" /note="PFAM: protein of unknown function DUF165; KEGG: sth:STH3030 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF165" /protein_id="YP_002459674.1" /db_xref="GI:219669239" /db_xref="InterPro:IPR003744" /db_xref="GeneID:7260234" /translation="MLIVLAYLAANVAANLSVTYFGPISTPINAFLLIAFDLVARDKL HEQWSRKHLWPKMLLLVGTGALLSWFINRNAGPIAVASFIAFLLTGITDTAVYQALRK HPRFVKVNSSNVVSAAVDSIAFPTLAFGMFIPYAVFGQFFAKVFGGYIWSLILFRKDR PKLDDGLKTT" gene complement(3444680..3444832) /locus_tag="Dhaf_3219" /db_xref="GeneID:7260235" CDS complement(3444680..3444832) /locus_tag="Dhaf_3219" /inference="similar to AA sequence:KEGG:NT01CX_1728" /note="KEGG: cno:NT01CX_1728 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459675.1" /db_xref="GI:219669240" /db_xref="GeneID:7260235" /translation="MDKNIELMKKLIEEKKKKSAQQGGPNKAAAKLGQARGGIKSHKK GGLFDK" gene complement(3444868..3446829) /locus_tag="Dhaf_3220" /db_xref="GeneID:7260236" CDS complement(3444868..3446829) /locus_tag="Dhaf_3220" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_1814 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459676.1" /db_xref="GI:219669241" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260236" /translation="MNLLTAESLTKSYGIKPLFQDISLGIEEGQKIGIIGVNGTGKST LLKILAGLEQPDQGQITTNNELQLEYLPQEPDFDPEATVLQQVFKGNSPLMKLLRDYE TALERLNQDPNSESYQNTLLQLGQKMDSHNAWQIESEAKAVLTKLGITQFDIPVGTLS GGQRKRVALAGALIQPSNVLILDEPTNHIDNEMVDWLENYLHKLKGALLMVTHDRYFL DRVANRIFELDRGKLYAYPGNYSRFLELKAERDEQEEATERKRQNILRNELAWIRRGA KARTTKQKARIDRFEQLQADQPEEKTGKVEVSAGAARLGKKVIQCSHLRKSYPGSGTV IDDFSIILAKYDRIGIIGPNGSGKSTLLNILAGRMPADAGEIEWGPTVKLGYFAQEYR EFEPQTKVIDVIKAVAEVIPTSDGGVLTASQMLERFLFTPAQQWTPVEKLSGGEKRRL YLLQVLMSSPNVLLLDEPTNDLDIQTLSILEDYLEDFPGVVITVSHDRFFLDRVVDQI LAFEGQGRIHFAIGNYTDYREQLARRIAEEQSSREALSKTQKLNGQNSRLGEAEAAGH QAKPKERPVKMSYKEQREYEQIEDRIAGLEGQLEQVDQDMAEEGSNYGKLNELMKAKE DLEKQLEESLERWTYLSELAEEIAGRKAP" gene complement(3447091..3447318) /locus_tag="Dhaf_3221" /pseudo /db_xref="GeneID:7260237" gene complement(3447379..3449622) /locus_tag="Dhaf_3222" /db_xref="GeneID:7260238" CDS complement(3447379..3449622) /locus_tag="Dhaf_3222" /inference="protein motif:PFAM:PF05569" /note="PFAM: peptidase M56 BlaR1; KEGG: hmo:HM1_0349 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptidase M56 BlaR1" /protein_id="YP_002459677.1" /db_xref="GI:219669242" /db_xref="InterPro:IPR008756" /db_xref="GeneID:7260238" /translation="MIETVMTSSVLILIVVALRQLLRGRISSRLQYALWLLVAIRLLL PFSLFESPISVLNALPKQPGGFVTVVPTTIPNPATLATSSNPAVPADPANPINPVNPV KGIEPIGIQTAQNNNTVTNAAAHKTDYGAMATYLWLGGILASGGVFVMANVRLSRKLR RSRQRVHNASCPLAVYVTEDLPSPCLYGLWKPSIYLTPPSLADEQRITHVIAHELTHY RHGDHIWSLVRVLCLCIHWFNPLVWLAVVLSRQDSELACDEGTLRVLGEKNRMAYGKT LIEMMTASPKPADLFYCATTMTGGKGEITERIKRIAQQPRMLGITVVAVLLIAAVAIA GTFGGAHSEAATGELSPAEALWRERTNYVGDNSAVGRLIGLLPVPEGVQYDHFKLHTG EQPYDIELVYSVSSEVLKQYDTEEARQDNPFRQNALILLALVDNAGGIRATLTDGQRE VGFINGREWADYTVGEDVRNYAESPEKLQELMGFSFASGAATQVRTHIEGGTLVYDSS GIVIKDIESQNLHGFNIKGKVMLISDPKRVTLAVTEEIGTVEEKLTDMVSRSGAIAGI NAGGIYLSLEEGNEVFPDGITVQNGEVVYNNAGDQAVEFIGLDAEGKLITGPMNVQEI KEKNIQEGVGFSPPLADNGTTLVREGKPAVPGDGGWGIAPRAGIGQRADGTLIFMVID GRDPDWSIGATLKDMENLFLEYGAVEAVNLSGGSMVEMVYDGKVLNKVSNIFGERPIP TGFVVMP" gene complement(3449615..3450001) /locus_tag="Dhaf_3223" /db_xref="GeneID:7260239" CDS complement(3449615..3450001) /locus_tag="Dhaf_3223" /inference="protein motif:PFAM:PF03965" /note="PFAM: Penicillinase repressor; KEGG: cbb:CLD_0087 penicillinase repressor" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="YP_002459678.1" /db_xref="GI:219669243" /db_xref="InterPro:IPR005650" /db_xref="GeneID:7260239" /translation="MVTANNALGKSEWYIMEKLWELAPRTYVQLCHELKDDPGWSRST VQTMLERMTEKGVIRFEVVGRAKQYYPNVARDDVAVAEARSLLERAFAGSASMMMSTL VRKKQLSKEEINELYAILQGAEDKND" gene 3450572..3451804 /locus_tag="Dhaf_3224" /db_xref="GeneID:7260240" CDS 3450572..3451804 /locus_tag="Dhaf_3224" /EC_number="3.4.11.4" /inference="protein motif:TFAM:TIGR01882" /note="catalyzes the release of the N-terminal amino acid from a tripeptide" /codon_start=1 /transl_table=11 /product="peptidase T" /protein_id="YP_002459679.1" /db_xref="GI:219669244" /db_xref="InterPro:IPR001261" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010161" /db_xref="InterPro:IPR011650" /db_xref="GeneID:7260240" /translation="MSSVIERFLRYAAIDTQSNEESQTTPSTGKQLNLARLLEQELKE LGLQDARIQEGYVYGTLPANSTKAIPAIGFIAHMDTSPDFSGTDVKAQLVENYDGQDI LLNPEHNLVLSPADFPELLDYIGKTLITTDGTTLLGADDKAGIAEIMTAIAYLTAHPE IEHGTICVAFTPDEEIGRGADQFDVAGFGADFAYTVDGGSIGELEYENFNAAKAIVKV KGRNVHPGNAKNKMINSILLANEYIVKLPPQETPATTEGYEGFYHLNDIRGDVEETTL YYIIRDFAEDSFAKRKETMLNLAEECNKKYGSGHFHVEITDQYKNMKEKIQPVMHIVD KAQKAMETVGVKPLIKPIRGGTDGSRLSFMGLPTPNLFTGGHNYHGRYEFIPTFAMEK SVEVILKIIELYAEEHSN" gene complement(3451939..3452724) /locus_tag="Dhaf_3225" /db_xref="GeneID:7260241" CDS complement(3451939..3452724) /locus_tag="Dhaf_3225" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459680.1" /db_xref="GI:219669245" /db_xref="GeneID:7260241" /translation="MGEYVREEVYPIIQGLDLYLAKGKAISYNSSSFNQLKLNLREYE LYFNERRCENFDMVGTYRPYHFNSENFGLYLYAEMFGMYLLSILRQTLMTLREAHTLA LDSVLTHVSFHYLIERYCILLDDVGRNNEGLYPAYKRKIYSQTWGTQDCLEETLANAF VLKAHPYWTDKQKDYIQSVYARQREGYIQAHNLNPVHYRELYGLLENQLKGQRSAHEV PSLYDFVHKNLPFRFIGLPVYLVNDCGKLEEFIQIVELLFPQI" gene complement(3453210..3454388) /locus_tag="Dhaf_3226" /db_xref="GeneID:7260242" CDS complement(3453210..3454388) /locus_tag="Dhaf_3226" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: gka:GK1923 multidrug-efflux transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002459681.1" /db_xref="GI:219669246" /db_xref="InterPro:IPR001411" /db_xref="InterPro:IPR001958" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7260242" /translation="MQKQYLRPMVILVIIQFLVMVGFGIVIPILPFLIEELGGGAFSL GLFMSAYSIMQFFFAPFWGRLSDRIGRRPVLLIGLSGYGITFFLYGMAGNLPLLIAFR ALSGVVSSATLPTAMAYMADITEGADRSKSMGMLGAAMGLGMVFGPALGGFLGHYSFT LPFYFAGTLALLVLPFAWKLLPETLKEPNLESKPKVRFHPGVIRDPLFPLFIFNFVLS FTMAMFESTFTLFAAERVGFGPQEMGIVFMIIGITGVIVQGMLIGKVVRRFGDAKPAK VGALLCAVAFLWLLWAPNAILLVLGTVVFMIGNSFMVPTGSSLVSKNSHTGQGASLGV FQSFGSLGRIAGPLVGGGIYGLSMNTPYVIGAATLVLCLIFFGTKIQDRKAGEPGTPA" gene 3454562..3454801 /locus_tag="Dhaf_3227" /db_xref="GeneID:7260243" CDS 3454562..3454801 /locus_tag="Dhaf_3227" /inference="similar to AA sequence:KEGG:CPF_1268" /note="KEGG: cpf:CPF_1268 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459682.1" /db_xref="GI:219669247" /db_xref="GeneID:7260243" /translation="MSTYKTKGVCASHIHFEIKENKLYDVEFVNGCPGNLQALAVLLE GMSVDDVVERLKGIRCGHKATSCADQLVKALESSK" gene complement(3454881..3457817) /locus_tag="Dhaf_3228" /db_xref="GeneID:7260244" CDS complement(3454881..3457817) /locus_tag="Dhaf_3228" /EC_number="1.1.2.4" /inference="protein motif:PRIAM:1.1.2.4" /note="PFAM: FAD linked oxidase domain protein; KEGG: afw:Anae109_1439 FAD linked oxidase domain-containing protein" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase (cytochrome)" /protein_id="YP_002459683.1" /db_xref="GI:219669248" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260244" /translation="MTHWQSGTRPLNYYVNPSDPRNLKQKEEDLKELPQEYQDFYREV SQFVPYQRIFIDPLYTLGYGIDASFYRLIPKIVIRVLNDAEMGEILRLSQRTKIPVTF RTAGTSLSGQALTDSVLLVLQGSWRHYKIHDHGKKISLEPGILGVEANRYLRSYKRKI GPDPASIDHCMIGGIAANNASGMCCGTSDNSYKTVDEMRIIFDDGTVLDTGDSSSRQY FRERKGELIRQIEEIRDELNADPDLVAMIKKKYKIKNTTGYSINAFVDFQDPIEIIKH ILIGSEGTLGFISEITYKTVVDYDHKASALIMYPDMDHACRAVMKLDRDLVAAAEMMD RPSLRSVEDAPGMPDYLKSLSDTATALLVEVRGANPEELEQRIKNATAVLEDIPTIFP ISFTSVKSEYETYWKIRKDIFPAVGGVRAQGTAVLIEDVAFPLERLAEATADLRDSLN KFGYTDAIIYGHALDGNWHFIFTPKFDSDEEIARYEGLMNEVNEFVVKKYNGSLKAEH GTGRNMAPFVELEWGSKTYELMKRIKSAFDPHNLLNPGVIINDNKNVYLENLKAMPAS HDTIDRCTNCGFCQDICPSKHLTTTPRMRIILQREISDLKRTGRDPKRLMRLLRDYDY AGNATCATDGLCATSCPLNINTGDNTKYLRSRAITPATRKVARALAKNMNGVTGIMRF GLGAVDGVHGFLGTRILGGMARTARDVSQSKIPLWNEWMPSKGKGKVRPRPPFASAQG GEVLKVVYFPSCISRSMGPARKDKDQRPLNEVMCSLLAKAGYEVIIPPGLDKLCCGMP WESKGFFDIADEKSAELEKVLLQASENGKYPIVCDTSPCLYRMKRAFTSGIELHESVE FTHDFLLHRLKIKKARETIAVHVTCSSVKMRLSEKFKALAEACAEKVIIPDDVHCCGF AGDKGFTYPELNDAALAGLNGALPDNCAGGYSNSRTCEIGLSAHSGISYQSLIYLVDR CSSPLR" gene 3458087..3459919 /locus_tag="Dhaf_3229" /db_xref="GeneID:7260245" CDS 3458087..3459919 /locus_tag="Dhaf_3229" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: hmo:HM1_1619 sensor histidine kinase, putative" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002459684.1" /db_xref="GI:219669249" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260245" /translation="MFLWKTLKHHSIAAIGLLYFISRLVYTDIQWVIPSPYFLFLHTL LEFFSIIVSFTIALQCLASYPYTKSDRKYLLGIIFMSVGLYDLMHVLTYKGMFLNSTG ARSTYFWLIARLTEAIGLLIYILNRAPKKRVSRVLGSVCLTIILIVIMKWGASLPAML TPDGGLTPLKIAVEYFVCSLNFAALFILIYKSHSEEVPKRSNLSNALLLLLISELFFT IYNNIYDIDNVAGHIFKFLGYIFILKNILIKNLHEPFKKIASGFQYFNTVFQFAPVGL SIIRISDNQFLEINHCFTNYLGLLGEDVIGKTPLEVGFNATDWTKILDYAKNNKPHLG ATSLGNLEISLEREGSGIAAISAETIQLGHEECILMSLTDIKELKSLHTEMVRLDRLN LVGQMAAGIAHEIRNPMTTVRGYLQLMGEKTQDMGQKSTLHFMIEELDRANTIIKEFL TLAKSHKPNYQIFNLNTLLQNLHPLIEADSFTQNKQIRFTPGDIPDIEISPKDITQMV LNICRNGLEAMSEGGCLTIQTYKKNHTVVLAIKDEGHGIPKELLEKLGTPFFTTKESG TGLGLSICYKIAKSHNARIDVLSSPEGTQFLISFPLQSILISSD" sig_peptide 3458087..3458170 /locus_tag="Dhaf_3229" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.897) with cleavage site probability 0.894 at residue 28" gene complement(3459997..3461841) /locus_tag="Dhaf_3230" /db_xref="GeneID:7260246" CDS complement(3459997..3461841) /locus_tag="Dhaf_3230" /inference="protein motif:PFAM:PF00183" /note="molecular chaperone" /codon_start=1 /transl_table=11 /product="heat shock protein 90" /protein_id="YP_002459685.1" /db_xref="GI:219669250" /db_xref="InterPro:IPR001404" /db_xref="InterPro:IPR003594" /db_xref="GeneID:7260246" /translation="MSQIETKEFQTEIRQLLDIVINSLYTDREIFLRELISNAADASE KVRYMQLSGQNVKDQELPLEIRITPDENAKTLTIADAGIGMTKEDLIENIGTIAHSGS KAFVQRLAEAGDKKDVNLIGQFGVGFYSAFMVADKVSLTSRSYEPDAQGYRWESDGRG SYSISEAMDLPRGTSITLHLKEDAHSFAQADTVKRIIKQYSSFVPYPVYVGEEKINTV QALWTKNKNEISEEEYKEFYKYIANAYDEPLMRMHFSSDAPINLNALLFVPKSNMEKF GFGRMEAGVNLYCKKVLIQEKAKDIVPEWLRFARGVVDSEELPLNISRETMQDSALIA KLNKVVTSRFLKFLDDQAKNEPEIFKEFWNEFSIFLKEGAANDFTHRQEILKLLRFES SKTGEGELISLGDYVGRMKEGQEAIYFINGPTRQIIEEGPYLEVFKNKDYEVIYTYDG IDDYVFDMIREYDGKRLLSADHGDLNLADEDGASAEEKLLSEEELKEFNDWLKEVLGE KVTEVRESKRLVDSPAIILSHYGTHSMQRMMQLMNRDLQDVPAGILEINPKHVLIQRL NDLRKQEDSFAPLAAEQLFANAQIAAGIIVDPRSMVSRLNEILEKALR" gene 3462051..3463400 /locus_tag="Dhaf_3231" /db_xref="GeneID:7260247" CDS 3462051..3463400 /locus_tag="Dhaf_3231" /inference="protein motif:PFAM:PF02646" /note="PFAM: protein of unknown function DUF195; KEGG: swo:Swol_0014 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF195" /protein_id="YP_002459686.1" /db_xref="GI:219669251" /db_xref="InterPro:IPR003798" /db_xref="GeneID:7260247" /translation="MIYLPIVNSALAALTVFILIFLLSQFFKFQRENSTHALHTKLQS LENQITQLEKNLERQERLWQGEFARNREENNTNSRQGREEMSHALKRFSDSQLTQMSE IATLQRSQLDIFSKQLNNLSQTNEQKLEQLRQTVEERLRLIQQDNAQKLELMRVTVDE KLTSTLEQRLGESFKMVSDRLEQVHKGLGEMQTLASGVGDLKKVLTNVKTRGTWGEIQ LGNLLEQLLTPDQYSINIATKAGSKDRVEFAINIPAKDGHDRLVYLPIDAKFPLEDYH RLLDAQEQSNLPRIAEAEKALEYRIKTEAKSIHEKYVDPPNTTDFAILFLPVEGLYAE ILRRPGLCELLQREYKVVIAGPTTLAALLNSLQMGFRTLAIEKRSSEVWNLLSAVKTE FGKFTEILEKTQKKLQEASNTIETATRKSRSIGRKLKEVQTLPVEESAALLAAGEEE" gene complement(3463470..3466559) /locus_tag="Dhaf_3232" /db_xref="GeneID:7260248" CDS complement(3463470..3466559) /locus_tag="Dhaf_3232" /inference="protein motif:PFAM:PF00873" /note="PFAM: acriflavin resistance protein; KEGG: swo:Swol_1118 hypothetical protein" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_002459687.1" /db_xref="GI:219669252" /db_xref="InterPro:IPR001036" /db_xref="GeneID:7260248" /translation="MNNKKGLLYHIISNWRFTIFFTILTMALGIYSYYIVPKQESPDI SAPFAVITTIYPGAAPEDVEKLVTRVIEDEIREVPGYKTSQSITKNSLSVVVLELHND VDVKEAWNELGQILDGAQGKIPAECFDIEADTKLSETAGMIISLSGAGYTYEQLADYA EQFKSRLAKIDGISRFTVTGVQNKAARIEVKIAELNKYNISLDELVSLIQAQNLQIPS GSLSDQRVKVNVSSPGLFTSLSDLENMIIDVSAETGAPIRLQDLADIRWDIEDADYQL KHNGQNAIMLSGFFKENRNILLVGEDVRAELDRLKAELPPELIVDEVVYQPTDVDKSV AEFFKNLLEGMALVLIVVFLGMGFKNALVASTAVPLSIVITFIAMHLLGIQLQEISIA GLILALGILVDDAIVIIDAIQVHIDQGLEKMEACIRGMKQAMIPVFSATLTIAAAFSP MLFVPGPAGEFLRSLPQTVIIAVSASFLVAITVTPVLAYLFFDKLKKEDDKRTPLRRV YGYALQIGMQYKKSTVCAAILLIAIAGYGALQLQIEFFPKADKNVFYINLYSENASDI SATARLAEQVEGILQENEEIVSYSTALGGGLPKFYITLPKATPAKDFGQIMVKVDLDK GEFANNEDLALHLQEQLDQHLIGGSANVLLLEKAMPGDPLEVRVSGADPLQVRDGVAL IRRELEGVPGTMKVADDYVAGEYEFVVDVDTERATTMGITNYDIQRQINIALSGAEAS LFRIAGNEYPILVQSDVKSKEDLENLAIKSSLTGHKILLKQLGNIHLQATVPTINKYD GVQAVTISGKVQPGFSAVTIENTLKQRLTQSGFDFSGLTVSYEGEAKDIKDNFGSLGT TAIFALFLIYVILMIQFRSFLQPAIIFITIPLSVIGVVAGLMLFAQPLSFTALVGVVS LMGLVIRNAILLIEFINLAREEGMSIDEACHFAVNRRYRPIILAAVTTVIGLVPLAFS GSDLFTPMSVALMSGLLISTLFTLVVVPVLYSLLVREGKGTAPGASAAGKREMGQSV" gene complement(3466549..3467634) /locus_tag="Dhaf_3233" /db_xref="GeneID:7260249" CDS complement(3466549..3467634) /locus_tag="Dhaf_3233" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cbe:Cbei_2864 efflux transporter, RND family, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_002459688.1" /db_xref="GI:219669253" /db_xref="InterPro:IPR006143" /db_xref="GeneID:7260249" /translation="MRSKPTGWFMSLVMMLTLMLGGCTQAAAVIPPEKEHLVQVQKAE EGAYPVDLRYTGLTSAGELKKYSFKIPGKLTDIAVEKGALVKPGQKLASLDTAEYGLA VQASQLNVTKAEKAYTEARDNYGKLEKLHEAGALPEADLIKVKLDLDVKEATYQQAQL ELEAKQIQLNDAQLYAQNEGYVVDILFRESEILAAGYPVVVIRSPEQKVTVGLSQSDV QKVKVGDRVEITLDGQKGTGHVERLEAVPDPQTRTYTAEILITEPFSSERYYLGATAE VKFAQGEAAGIWVPLACILNDGEDYVFLVEEERAVKRNIKLMDTQGFNIRVEGLKPGE HYIFSGMKSLKEGQKVRIQSEGTSHEQ" sig_peptide complement(3466549..3466635) /locus_tag="Dhaf_3233" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.833 at residue 29" gene complement(3467624..3468199) /locus_tag="Dhaf_3234" /db_xref="GeneID:7260250" CDS complement(3467624..3468199) /locus_tag="Dhaf_3234" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cbo:CBO1762 TetR-family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002459689.1" /db_xref="GI:219669254" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7260250" /translation="MRDRILEKAYELIQRYGLRGFTMDDVAGELGISKKTIYKSFTSK NQLISRLVDNIVEVEKKTFTEAVSGYSTWLEKFEAMLTMYTPEDIPFRLVDELYRYYP EEKEKIERLAEFRQEIFYPLIQEGQATGKIRLDLNPAIIVSMIHNLFMMPADPKMLES QDITIKQLLEQMKNLVFYGILNHGEDNQDEI" gene complement(3468312..3468989) /locus_tag="Dhaf_3235" /db_xref="GeneID:7260251" CDS complement(3468312..3468989) /locus_tag="Dhaf_3235" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459690.1" /db_xref="GI:219669255" /db_xref="GeneID:7260251" /translation="MGSWESVVVAIGIILLFYFARRYTPGQKHPKTMKTGSRSKEETP ALEMILTKKEMKHVPVKPAPSTQGAASLVMHPHSFERAKREYMHYAQQFSGLYEVLFL SCSGKASAQGQEQLLKNWEEGIVGTNAPNFILAWNTIIQKYYGRNFYFKGNVKGKSDQ GEEERILQDWLKILLRWGLHREPRGQIQLEPHGGEHIGAQDLNYYWVLNGEVLEEGRG KSQSLGQ" gene complement(3469276..3471609) /locus_tag="Dhaf_3236" /db_xref="GeneID:7260252" CDS complement(3469276..3471609) /locus_tag="Dhaf_3236" /EC_number="5.99.1.2" /inference="protein motif:PRIAM:5.99.1.2" /note="KEGG: drm:Dred_0974 DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein" /codon_start=1 /transl_table=11 /product="DNA topoisomerase" /protein_id="YP_002459691.1" /db_xref="GI:219669256" /db_xref="InterPro:IPR000380" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013497" /db_xref="GeneID:7260252" /translation="MGKTLIIAEKPSQAREYAKTLGVKGKREGYFENDEYIISWCIGH LFELKAPENYMDLPKVGKRWSIRRLPVLPRLGEFQYGLKSGTAKQFKVLQGLLRSPEV QQVICGTDADREGQLLFQEVWDAVGSKKPLFRLWISSLTQEAIREGMSKLRPVGEVEG LAQAGYGRSYGDWDFGMNLTEGFTALFGSFDPVRKKPNVISIGRVQTPTLALVVEQEW AIENFVPVAYVEVEAEFASGQGSYKGKWFDPAVKNTRDKNQETDNAQMMLDLDRGKEI VAKVQGKPGRIRSVKDKETKEPHPLLFDLTSLTVSASKRYGFGAEKVLKIAQSLYEKK AITYPRTDCNYLPPDMLPKLKVHLQALEQSPFASWVKEALDNPLPGGKRVINEITAHH AIIPTTEKMIPNLSPDERKIWEMIVLRFLCIWFPPARYAEKEVVTVVEEEFFLTKGKT LLESGWKKIENTEKYTEGSGLQLPLLQQNEEVVTRSCQALQKETKPPKRYTQGDLIKA MEGAGKEIEDETLRRQLKGKGLGTVATRGAIIENLLDRGYLLQQQKVLVPTAKGTELI RLIKERLPRAQLLISAEMTGQMEYELAQVERGELPLSRYMEKVEEAIRGIIEELRHYE ATRGKKPLAFAPQKAGASGRKSKSNLEEKPQELPVQAKVTKAAKTRQESPASAAEENL GICPSCGGGVVEREKGYGCQNWKNGCPFILWKNPICGKVLTPAQVKSLLKKGKTNLIK GFRSKNGSVFAAYLVWEDPSSGKLKFEFENNDRAKPG" gene complement(3471637..3471792) /locus_tag="Dhaf_3237" /db_xref="GeneID:7260253" CDS complement(3471637..3471792) /locus_tag="Dhaf_3237" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459692.1" /db_xref="GI:219669257" /db_xref="GeneID:7260253" /translation="MNCPQGDLLAKTCASSDLHNIQKYLNEVLLLRGFERQSAQDKKE NITREWK" gene 3471954..3472868 /locus_tag="Dhaf_3238" /db_xref="GeneID:7260254" CDS 3471954..3472868 /locus_tag="Dhaf_3238" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpo:COPRO5265_0892 daunorubicin resistance ATP-binding protein DrrA" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459693.1" /db_xref="GI:219669258" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260254" /translation="MDKIIEVVDLHKSYGHVQAVKGLNFYVEKGKLFAFLGPNGAGKS TTIDIICTFLKPDRGRVVVDGYELGKEDNKIRSVIGAVFQDGLLDPLLTVEENLQIRG GFYGLKKAVLADSIKSIAVLTGVAEFLKRPYGNLSGGQRRRADIARALVNAPKILFLD EPTTGLDPQTRKNVWETIQKMQKEKDMTIFLTTHYMEEAAEADYVIVIDNGEIAAKGT PTELKRDYASDRLKLSYHDKEKLSTALQEMHIPYHQVADQIIIELSSTLEALPILAGC QAYLTGLEVSHGTMDDAFIKITGKEIRE" gene 3472865..3473719 /locus_tag="Dhaf_3239" /db_xref="GeneID:7260255" CDS 3472865..3473719 /locus_tag="Dhaf_3239" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: cpo:COPRO5265_0891 ABC-2 type transporter superfamily" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002459694.1" /db_xref="GI:219669259" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR013526" /db_xref="GeneID:7260255" /translation="MINFMLRNLKIFFRDKSAVFFSLLAVFIIIGLYALFLGDVWAED YADIENARYLMDSWIMAGLLAVTSVTTTMGALGIMVADKAKNIIKDFQSSPVSRSALA GGYILSAFVIGVIMSVVALILAEIYILANGGELLTGTKTLQVLALILLSSLASTAILF FLASFFKSLNAFSTASTVIGTLIGFLTGIYLPVGVLPEAVQYVVKIFPISHAAVLFRQ ILMEAPLQEAFVQAPAESLAEFKTLMGVTFRFGDTLLSPQGSILVLLVTAGLFYGLSI LNLSRKRK" sig_peptide 3472865..3472993 /locus_tag="Dhaf_3239" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.928 at residue 43" gene 3473821..3474003 /locus_tag="Dhaf_3240" /db_xref="GeneID:7260256" CDS 3473821..3474003 /locus_tag="Dhaf_3240" /inference="protein motif:PFAM:PF07561" /note="PFAM: protein of unknown function DUF1540; KEGG: cth:Cthe_3071 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1540" /protein_id="YP_002459695.1" /db_xref="GI:219669260" /db_xref="InterPro:IPR011437" /db_xref="GeneID:7260256" /translation="MPGRVDKVDSHLQGVKCVVNTCHYWGNDHCHAQTIEIQAPNAKT TEMTDCATFVPNGNMR" gene complement(3474096..3474770) /locus_tag="Dhaf_3241" /db_xref="GeneID:7260257" CDS complement(3474096..3474770) /locus_tag="Dhaf_3241" /inference="protein motif:PFAM:PF02517" /note="PFAM: Abortive infection protein; KEGG: bcy:Bcer98_1209 abortive infection protein" /codon_start=1 /transl_table=11 /product="Abortive infection protein" /protein_id="YP_002459696.1" /db_xref="GI:219669261" /db_xref="InterPro:IPR003675" /db_xref="GeneID:7260257" /translation="METMEHHKKEQYKEEHQEKAQYEEKLRQALLPSFWLTQLLSLLL GGFLLWFFYLRQGYFWQDFFAWDSTWSIWCLSTAVALSMMGLQILAWKVFSPDAFDDG GINRLLVELPAKLLFPMFIIGAFSEELLIRGVIQTGLAGFLGPLYGILFTSLIFTGIH FRYLKKPLLMGAAFVISVFLCLLYGLAGTLWATVYAHFLYNFGAALLAKKYYLPLLAG DKKMNS" gene 3474949..3476097 /locus_tag="Dhaf_3242" /db_xref="GeneID:7260258" CDS 3474949..3476097 /locus_tag="Dhaf_3242" /inference="protein motif:PFAM:PF01170" /note="PFAM: putative RNA methylase; THUMP domain protein; KEGG: hmo:HM1_0388 THUMP domain-containing protein" /codon_start=1 /transl_table=11 /product="putative RNA methylase" /protein_id="YP_002459697.1" /db_xref="GI:219669262" /db_xref="InterPro:IPR000241" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR004114" /db_xref="GeneID:7260258" /translation="MAKLELIATSAFGIESIVNRELHNLGYTETQVENGKITFAANEL GICRTNLWLRSAERVLLKMGEFKATTFEELFQQTKALPWEEWLPVDAEFPVEGKSIKS KLFSVSDCQAIVKKAVVERLKDVYGISWFKETGPKYKIEVALLKDVVTLTLDTSGAGL HKRGYRRLAGQAPLKETLAAAMINLSYWKADRALIDPCCGTGTIPIEAAMIALNRAPG LKRDFIAEKWPNIKEKLWREAREEAEDLYTRDQALHIYGSDIDPKALQLARAHCEDAG LTDKIFFQRLPAAEVRSRFQYGHLITNPPYGERLGEEEEVKQLYKDLGEIFKSLATWS LHMITTDKHPELLIGRRWDKSRKLYNGRLECHYYQFFGPKPPRSPRPE" gene complement(3476228..3477610) /locus_tag="Dhaf_3243" /db_xref="GeneID:7260259" CDS complement(3476228..3477610) /locus_tag="Dhaf_3243" /inference="protein motif:PFAM:PF00696" /note="catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP" /codon_start=1 /transl_table=11 /product="aspartate kinase" /protein_id="YP_002459698.1" /db_xref="GI:219669263" /db_xref="InterPro:IPR001048" /db_xref="GeneID:7260259" /translation="MLTVEKIGGTSMSQFEDVLKNIIGEPDSQRFSFGRVFVVSAYAG VTNKLLEDKKTKAPGIYRHFVNGEDCEEALNVLLQDLLKVNERFVNIGLDYEAAKEFL GSRIQQTKSYLHSMHEIIASGYVDRENIFSAARELLASLGEAHSAFNSVNIMQNRGIP ARLVDLTGLRDSSQLTIDERIAKAFRGVDPFKEIVIVTGYTKGKEGIMRQFERGYSEI TFSRIATHLHADEAIIHKEFHLSSADPKIVGVEKAIPVGRTNYDVADQLADIGMEAIH PNASKPLEMAGINLRLKNTFEPDHPGTLISKDYIGPEAKIEIIAGSDKVVVVEIHDSL MVGEAGYDKQIMEMFMNYSVSYIMKATNANSISLVIWEHDLNEELMAELKGAYQTVTI LPAAIVCVIGSNIAVPNILARATSSLAKNHINVNCVSQSLRQVNMQFVIDRDKYTSAI YHLNEDLCVG" gene complement(3478206..3478802) /locus_tag="Dhaf_3244" /db_xref="GeneID:7260260" CDS complement(3478206..3478802) /locus_tag="Dhaf_3244" /inference="protein motif:PFAM:PF00730" /note="PFAM: HhH-GPD family protein; KEGG: amt:Amet_3514 methylated-DNA--protein-cysteine methyltransferase" /codon_start=1 /transl_table=11 /product="HhH-GPD family protein" /protein_id="YP_002459699.1" /db_xref="GI:219669264" /db_xref="InterPro:IPR003265" /db_xref="GeneID:7260260" /translation="MVFFPYGSKEIEHLKTRDKVLGQAIERIGMIERGITPDLFEALI SSVVSQQISKKAAETVWNRLQTLLGEISAEKIALADLEAIQGCGMSMRKAGYIKGVAA AAQRGEVDFQELPTLSDEEIIQSLSALPGVGVWTAEMLLIHSLCRPDVVSYRDLAIRR GMMNCYGLEELSKETFEHYRKKYSPYGSVASLYLWAMS" gene complement(3478803..3479231) /locus_tag="Dhaf_3245" /db_xref="GeneID:7260261" CDS complement(3478803..3479231) /locus_tag="Dhaf_3245" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: bwe:BcerKBAB4_2597 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459700.1" /db_xref="GI:219669265" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260261" /translation="MKVVEAKGAELEEAFQIRREVFVEEQGVPLQDEFDGYDEPGAAA RHILVYYEGQPAAAGRLRWLGDTAKLERICVRANLRKFGLGSVVVKSMEQIAQREGFH KAKVHAQTQAQNFYEKLGYRQVSEEFMEDGIPHIIMERTL" gene complement(3479285..3479728) /locus_tag="Dhaf_3246" /db_xref="GeneID:7260262" CDS complement(3479285..3479728) /locus_tag="Dhaf_3246" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_0136 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002459701.1" /db_xref="GI:219669266" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260262" /translation="MIRAMQEGDRELFLELAAEFYHSDAVLHPVPEEFHSRTFAEMMS SDRYLNGYILEQENQAAGYAITAKTFSQEAGGIVVWIDEIYILPPYRSKGLAREFFQY LESHRHPGIKRIRLEVEEENVQAISLYKRLGFNDLEYIQMIKDFD" gene complement(3479833..3481509) /locus_tag="Dhaf_3247" /db_xref="GeneID:7260263" CDS complement(3479833..3481509) /locus_tag="Dhaf_3247" /inference="protein motif:PFAM:PF03109" /note="PFAM: ABC-1 domain protein; KEGG: bca:BCE_4898 ABC1 family protein" /codon_start=1 /transl_table=11 /product="ABC-1 domain protein" /protein_id="YP_002459702.1" /db_xref="GI:219669267" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR004147" /db_xref="GeneID:7260263" /translation="MISRKIRHVHRYQEVATVLARNGFSLILEEMGLINFISFSRRIR RREEEVDPITLGQRLRNALEELGPTYVKIGQIASTRPDIIPDYLITELEKLQDQVPPF SFAEVSQIIEAELGALPQDIFRHFEEEPLAAASIGQVHRAVLQSGESVAVKIQRPHIA QKIETDLEILLDLAALAEKRMDWAALYHVRDMVEEFANSLRNELNYEIEGNNAQRIRK QFQGDSSIHIPKVYKEYSTKKVLTLEYIQGVKLSQFQTLEALGYNRKELAENLIKAMF KQILIEGFFHGDPHPGNIFVLPKQVISLIDFGMIGRLSSDMKDHFASLVIGMMRRKTE DMVEAVFAMGIVPEDLDPKVLYRDVDGLREKYLDVPMSEVDLGSAVNDLFKVAYKHRI IIPADLVLLGKSLLSLEGIVEQLDPEISIIDIAEPFGEQLLKERLHPAFLAEKTWKHF REYFDLLLNLPKQAKEIFSSIQRGKIRVEIYLPELAAFIRKLDRISNQLSFSILLLSF SIIMCGLVIASALGKEPLVFWRIPAIEAGFTVAAMMFILLLVSILRSGRF" gene complement(3481502..3481798) /locus_tag="Dhaf_3248" /db_xref="GeneID:7260264" CDS complement(3481502..3481798) /locus_tag="Dhaf_3248" /inference="similar to AA sequence:KEGG:GK1755" /note="KEGG: gka:GK1755 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459703.1" /db_xref="GI:219669268" /db_xref="GeneID:7260264" /translation="MKDMLKKGLALGLGFAVVSKEQIEKVVDELVKKGELSANESKEL MNELVQKGEDQQNEIQVRLKEQVQKILTELNLPTKADIERLENRIAQLESRTHD" misc_binding 3481938..3482081 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 78.76" /bound_moiety="adenosylcobalamin" gene 3482197..3483165 /locus_tag="Dhaf_3249" /db_xref="GeneID:7260265" CDS 3482197..3483165 /locus_tag="Dhaf_3249" /inference="protein motif:PFAM:PF01497" /note="PFAM: periplasmic binding protein; KEGG: bha:BH1585 ferric ion ABC transpoter (ferric ion-binding protein)" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_002459704.1" /db_xref="GI:219669269" /db_xref="InterPro:IPR002491" /db_xref="GeneID:7260265" /translation="MNRKKQAFTLLITLWVTLVLLSGCNSPSQQGAAPPEAPSGQDTI QTTSYPLTYTDDTGVATTLEKEPQRIICLAPPSTEILSALGLDRKLIGLTVYDNYPVG IQENAEYIFEDSLNPNLEQLIQLKPDLVVTGMHKDSFINSLRSLGIPVAHLNPQSLES TYQTIEKLGYITNTQEQAQAVLQGMKAKEQAIADKVEAIKEAERVRVWIEVDPGLFTA GAGTFLNELITKAGGINIASDVQDWAQYSEEQVIEKNPQVILSTYSYYMDNVKATIVA RPAWQAIDAVSNDRIYDLDSDMVTRSGPRIVDGLETIAKALYPERF" sig_peptide 3482197..3482292 /locus_tag="Dhaf_3249" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.609 at residue 32" repeat_region complement(3483230..3485257) /note="IS element" gene complement(3483377..3484624) /locus_tag="Dhaf_3250" /db_xref="GeneID:7260266" CDS complement(3483377..3484624) /locus_tag="Dhaf_3250" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS116/IS110/IS902 family protein; KEGG: fgenesh4_pg.C_scaffold_8901000001; . ; K07486 transposase" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002459705.1" /db_xref="GI:219669270" /db_xref="InterPro:IPR003346" /db_xref="GeneID:7260266" /translation="MSLFVGIDVSSSDFKVRILDERGNEPVKRLRALNDQPGCEQVAR YLFDACAQVNVDRLVIGLEATSVYSWPLQMFLAEDHSLAPLQPQIYSFNPKVVANFKK AYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNY FLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVAARPLDELIDFLMEKGKRH FEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEI RHFPNTLITIPGIGPVLSAGIIAEIGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDT PLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRM VDALLRSNQIYRPHGNRGNANQA" gene 3485268..3486305 /locus_tag="Dhaf_3251" /db_xref="GeneID:7260267" CDS 3485268..3486305 /locus_tag="Dhaf_3251" /inference="protein motif:PFAM:PF01032" /note="PFAM: transport system permease protein; KEGG: det:DET0685 ABC-type cobalamin/Fe3+-siderophores transport systems, permease component" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_002459706.1" /db_xref="GI:219669271" /db_xref="InterPro:IPR000522" /db_xref="GeneID:7260267" /translation="MNSRTFPKSIPWILGLSLLLLLSVVICVMTGSVSLPFHLTWKII LNHLPFLSFDPSWSSAQESIVWNLRLPRVFLALIVGAMLATSGVAFQGILRNPLADPY ILGVSSGAAIGAASAILFFRSFSFFGQSALPLFAFAGGLISLAFVFSLSRQHGQFERE TLILAGVVVQALLSAFLSLLIAVSGEQMQQIIFWMMGSLANSSWQNVLILLPYFLLGL AYLLLQSRELNVIALGERAATHLGINVERKKIAILMVGSLLATAAVSMVGIIAFVGLI IPHLMRLLVGPDHRILLPVSTLAGAIFLLWSDTMARTLLQSQEIPIGAITAFVGAPFF AYLLKSGLRRG" sig_peptide 3485268..3485372 /locus_tag="Dhaf_3251" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.483 at residue 35" gene 3486307..3487086 /locus_tag="Dhaf_3252" /db_xref="GeneID:7260268" CDS 3486307..3487086 /locus_tag="Dhaf_3252" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1933 iron ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459707.1" /db_xref="GI:219669272" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260268" /translation="MNLFEIQNLNQHYGSFAVLRNLSFAISQGDMFGIIGPNGSGKST LIRTISGLQPPTSGKVLLMDRPLSSHTSKELARQIAVLEQEGTPALPFTIEQIVSMGR YPWLKPFADLGSHDKAVVENILVKLNLGPKRSQKVSTLSGGQRQLVSLARAMAQEPRI LILDEPTTYLDIGHQSLVMDHVRQWHDELGITVIMVLHDLNIAAQYCNRILLLDQGEI VTWGKKEDVLREETLTQVYKTDLVQVHHPKLGVPQFLLSGK" gene 3487231..3488004 /locus_tag="Dhaf_3253" /db_xref="GeneID:7260269" CDS 3487231..3488004 /locus_tag="Dhaf_3253" /inference="protein motif:PFAM:PF00877" /note="PFAM: NLP/P60 protein; KEGG: lcb:LCABL_21960 peptidoglycan lytic protein P45" /codon_start=1 /transl_table=11 /product="NLP/P60 protein" /protein_id="YP_002459708.1" /db_xref="GI:219669273" /db_xref="InterPro:IPR000064" /db_xref="GeneID:7260269" /translation="MKKFINKLFVSLLALGFFATTLFAYPQTMAEPGTAQDLAWVEEM ALAPQSDTVESDLEAVLASRELARADADRQAAIGAATGEISRGSQSSSAPSQAPKSTA SSSSATSDKKSAATSKSTASAAKASVKTSASSTTSKATAVINTAKKYIGVPYVWGGTT TSGFDCSGYTQYVFAQHGISLPRVSRDQYKVGTAVSYSNLKAGDLVFFSLDGDKVIDH VGIFLGNGQFINASSSKGVTIYTMGSYWQSHFIGAKRVF" sig_peptide 3487231..3487305 /locus_tag="Dhaf_3253" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.949 at residue 25" gene complement(3488206..3489795) /locus_tag="Dhaf_3254" /db_xref="GeneID:7260270" CDS complement(3488206..3489795) /locus_tag="Dhaf_3254" /inference="protein motif:TFAM:TIGR00503" /note="TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: drm:Dred_0398 peptide chain release factor 3" /codon_start=1 /transl_table=11 /product="peptide chain release factor 3" /protein_id="YP_002459709.1" /db_xref="GI:219669274" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004548" /db_xref="InterPro:IPR005225" /db_xref="GeneID:7260270" /translation="MSISLEKQIRFRKTFAIISHPDAGKTTLTEKLLLFGGAIHLAGN VKARKTQRYATSDWMELERQRGISITSSAMQFNYQGFVINILDTPGHQDFSEDTYRTL TAADSAVMLIDAAKGVETQTIKLFEVCRRRGIPIFTFINKMDREGKHPIDLMDEVEKV LGIEAYAMNWPIGGGADFKGIYDRQTGQVECFTDGLRKGHDDTRQTGHIDDPWIKEWI GEDLLQRLREEIELLDMAGNVFDQERMDRGEVTPVFFGSALNNFGVPNFLDSFLKLAP APAPRQSNLGILEPASQQFVGFVFKIQANMNAMHRDRIAFIRICSGRYERGMNVIHNR THRKMRLAQPQQLFAQERTILDEAYAGDIIGVHDSGVLRIGDVLAEKDGIEFEAMPFF SPENFARVSIANALKRKQFIKGIQELQEEGAIHVFRDLNIGVEAPVIGVVGQLQFEVL EYRLRDEYGVEVQINNLPYEMVQWIPKDEEKIRILKESSMSMVVLDQDENYAVLLLDK WKANWLSERYGVEFHPQPIRE" gene 3490022..3490483 /locus_tag="Dhaf_3255" /db_xref="GeneID:7260271" CDS 3490022..3490483 /locus_tag="Dhaf_3255" /inference="similar to AA sequence:KEGG:Haur_1465" /note="KEGG: hau:Haur_1465 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459710.1" /db_xref="GI:219669275" /db_xref="GeneID:7260271" /translation="MTLYEVLYNTLKKDCWKFDYDQKNELFRLEIRGINCDFVSFIIV DEEQESLLCNTHIKQKIPFAKRVEVCNFMNRINYELAIGNFEMDMDDGEIRFRTYLDS ANSEPSQEQLINLIWNGAQTFDTYYPGFIKIVSEDYSAEEAVRVCSQDDES" gene 3490635..3490841 /locus_tag="Dhaf_3256" /db_xref="GeneID:7260272" CDS 3490635..3490841 /locus_tag="Dhaf_3256" /inference="protein motif:PFAM:PF00269" /note="PFAM: small acid-soluble spore protein alpha/beta type; KEGG: bay:RBAM_009980 SspB" /codon_start=1 /transl_table=11 /product="small acid-soluble spore protein alpha/beta type" /protein_id="YP_002459711.1" /db_xref="GI:219669276" /db_xref="InterPro:IPR001448" /db_xref="GeneID:7260272" /translation="MAGERSTNQPAVQGATQSLDQFKYEIANELGVQLGGDRTSRENG SVGGMMTKRMIQFAEENLKRGTRI" gene complement(3490952..3491152) /locus_tag="Dhaf_3257" /db_xref="GeneID:7260273" CDS complement(3490952..3491152) /locus_tag="Dhaf_3257" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459712.1" /db_xref="GI:219669277" /db_xref="GeneID:7260273" /translation="MPRKDGNKPQKEELKKIELTLKNIQENEQFLAENAEELSPHQLK DVRKHLDAKKKFLTETDGTIKY" gene 3491327..3491500 /locus_tag="Dhaf_3258" /db_xref="GeneID:7260274" CDS 3491327..3491500 /locus_tag="Dhaf_3258" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459713.1" /db_xref="GI:219669278" /db_xref="GeneID:7260274" /translation="MKVKAISSPDPRLLEQELNQWLEDNRWVKIVNVTQSTGQTHLVC LWYEEPNVPVLGG" gene 3491573..3492295 /locus_tag="Dhaf_3259" /db_xref="GeneID:7260275" CDS 3491573..3492295 /locus_tag="Dhaf_3259" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bld:BLi03675 YvfV" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002459714.1" /db_xref="GI:219669279" /db_xref="InterPro:IPR004017" /db_xref="GeneID:7260275" /translation="MKISLFITCLGDTMFPDLGETMAKIFTRLGHTVDFPEGQFCCGQ ISFNSGYMDDTRTVARATIDAFENSEVVVAPSGSCIGMIHHNYPDLFKDDPVYAKKAK DLIDKSYEFTQFVVNVLKTPDLGARYQAKVTYHPSCHATRLLGLRDEPMAILENIQGL EILPLPEAHLCCGFGGTFSIKMPKISEAMVAEKAEHVLASGADILTGLDMGCLMNISG YMEKHGRSIPAMHVIQLLGKGM" gene 3492298..3493740 /locus_tag="Dhaf_3260" /db_xref="GeneID:7260276" CDS 3492298..3493740 /locus_tag="Dhaf_3260" /inference="protein motif:TFAM:TIGR00273" /note="TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: bat:BAS3036 iron-sulfur cluster-binding protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster binding protein" /protein_id="YP_002459715.1" /db_xref="GI:219669280" /db_xref="InterPro:IPR003741" /db_xref="InterPro:IPR004452" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260276" /translation="MSLDNHYDVDAALDKALKDDFLRKATRRATDRLRNNKLAITEEL GNWEEWRQVGERIRNHVVENLDYYLDMLIENVEKNGGHVHLAKTPEDGVRIVQEIFQK HGFKSVIKSKSMITEEIHLNPVLEKDGIEVVETDLAEYIIQIADEPPSHIIVPAMHKT REQIAKLFEPIAGHPLESDTPTLTKFAREQLREKFLTSKIGITGCNFAVADTGTITMV TNEGNGRLTSTMPEVQITMMGMERIVPSYKELSVLLNLLARSATGQRLSVYTTMITPP KREGDIDGPKEWHLVILDHNRSEILGDEDFRSSLRCIRCGACFNVCPVYRQVGGHAYG SVYSGPIGVVITPLLEQNYEKWGHLPYYSSLCAACSEACPVRIPLQDLIVKHRDRKVL KGYTSGVEKKIFKYYGYYFSHPKTLSKFVRLGSKFQFILMRNGRIASGPPPLSNWTNS KTLPPVAKQMFRDQWPELEKKLKTMQRGDQ" gene 3493740..3494408 /locus_tag="Dhaf_3261" /db_xref="GeneID:7260277" CDS 3493740..3494408 /locus_tag="Dhaf_3261" /inference="protein motif:PFAM:PF02589" /note="PFAM: protein of unknown function DUF162; KEGG: bha:BH1834 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF162" /protein_id="YP_002459716.1" /db_xref="GI:219669281" /db_xref="InterPro:IPR003741" /db_xref="GeneID:7260277" /translation="MSERQAFIANIAKKLGRPTPTSVEPIKLKFPLYRLDSQEERIDK FMKMYEAMGGKAVQASTAKEAAQALREWFGESPQWLNPNSIVVWNELPTMARACLEEL GWPARSYADLPAPERNAIMDKMELGITGADFGIAQSGSLVLKSSAKRGRAVSLVPIRH LAFIPAAFLRDSLDQVLDELMGTDIPAAIEIISGPSRTSDIEMDLSIGVHGPVEVFCI LMMD" gene complement(3494534..3495115) /locus_tag="Dhaf_3262" /db_xref="GeneID:7260278" CDS complement(3494534..3495115) /locus_tag="Dhaf_3262" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459717.1" /db_xref="GI:219669282" /db_xref="GeneID:7260278" /translation="MSFGDKFTKWSSIIATVGTCILALTATITVTVTLNAWKIDRESS RPYLSLRESPQVELKSGLRLEFKFSNVGIHPAVNLASRTIVFAEKLQDKPIHNEPNYL VNEIPQDMSSSLVIALDPYEVDISEPDVNPYYIVLHLEYVDPIINQQYQQTLYYRWSG IKGGEGQPVVHVEVREKESIINYFAAQSINMDL" sig_peptide complement(3494534..3494644) /locus_tag="Dhaf_3262" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.870) with cleavage site probability 0.314 at residue 37" gene complement(3495253..3495408) /locus_tag="Dhaf_3263" /db_xref="GeneID:7260279" CDS complement(3495253..3495408) /locus_tag="Dhaf_3263" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459718.1" /db_xref="GI:219669283" /db_xref="GeneID:7260279" /translation="MKLKLFLFLLLVCIALYSLFNDRIGLAIAIIPIFLLMYLLKIIL YYYKKKE" sig_peptide complement(3495253..3495318) /locus_tag="Dhaf_3263" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.665) with cleavage site probability 0.273 at residue 22" gene complement(3495567..3496211) /locus_tag="Dhaf_3264" /db_xref="GeneID:7260280" CDS complement(3495567..3496211) /locus_tag="Dhaf_3264" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459719.1" /db_xref="GI:219669284" /db_xref="GeneID:7260280" /translation="MRINKNLFFSLGLSIMLILAVIVPAVSAQTIDQQPLTLAHDDKS VIIDGQRLEIDKIPEIKRGAKVEVKDSSVYKETIDGKLMLHVIKINEVNHGAFSTQDT KCVHSYTVNDYYDHTYMGTAELDTTWFISGGNITGINNHGWGTVPDYQWPDEWTNDGS DAYVIPGDPTQGVSYAYLTDHYSLLGFPVDHTTYYLETDVNGIGGYTDHKLIID" sig_peptide complement(3495567..3495653) /locus_tag="Dhaf_3264" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.870 at residue 29" gene complement(3496412..3496636) /locus_tag="Dhaf_3265" /db_xref="GeneID:7260281" CDS complement(3496412..3496636) /locus_tag="Dhaf_3265" /inference="protein motif:PFAM:PF00196" /note="PFAM: regulatory protein LuxR; Resolvase helix-turn-helix domain protein; KEGG: tcx:Tcr_1382 two component LuxR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_002459720.1" /db_xref="GI:219669285" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR006120" /db_xref="GeneID:7260281" /translation="MHGSSNLNKNTGRKNLTYREKEISKLRIQGYTRKEIADILNISH FTVKKHLENIYKKLGIASVVELIKLVYREK" gene complement(3496964..3497140) /locus_tag="Dhaf_3266" /pseudo /db_xref="GeneID:7260282" gene 3497491..3497865 /locus_tag="Dhaf_3267" /db_xref="GeneID:7260283" CDS 3497491..3497865 /locus_tag="Dhaf_3267" /inference="protein motif:TFAM:TIGR00494" /note="TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: baa:BA_0179 CrcB-like protein" /codon_start=1 /transl_table=11 /product="CrcB protein" /protein_id="YP_002459721.1" /db_xref="GI:219669286" /db_xref="InterPro:IPR003691" /db_xref="GeneID:7260283" /translation="MIYLWVGCAGMFGAMLRYLIGISFFADSRFPWATLTINLLGSFL LAWLTSYVFKKVRLSPHLSTAIGTGFVGSFTTFSTLSVETISLFQDGHNFLAMVYVLV SLLGGLTMSHLGFKVSKEVQKS" gene 3497865..3498221 /locus_tag="Dhaf_3268" /db_xref="GeneID:7260284" CDS 3497865..3498221 /locus_tag="Dhaf_3268" /inference="protein motif:TFAM:TIGR00494" /note="TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: btk:BT9727_4785 camphor resistance protein CrcB" /codon_start=1 /transl_table=11 /product="CrcB protein" /protein_id="YP_002459722.1" /db_xref="GI:219669287" /db_xref="InterPro:IPR003691" /db_xref="GeneID:7260284" /translation="MASHILLVGIGGFCGAIVRYFFSRKLNSGKLPVGTLTVNLSGAF LLGAMAGANLSTTTTLLLGTGFLGAFTTFSTLKLEMAQLQLKKEHRLFILYTTITYGG GIALAYLGYWLGSFFR" gene complement(3498385..3499230) /locus_tag="Dhaf_3269" /db_xref="GeneID:7260285" CDS complement(3498385..3499230) /locus_tag="Dhaf_3269" /inference="similar to AA sequence:KEGG:THEYE_A1336" /note="KEGG: tye:THEYE_A1336 chain A, A Novel iron Centre In the split-Soret cytochrome c from Desulfovibrio Desulfuricans Atcc 27774" /codon_start=1 /transl_table=11 /product="chain A, iron Centre cytochrome c protein" /protein_id="YP_002459723.1" /db_xref="GI:219669288" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7260285" /translation="MSEEKDMSRRKFLKSGILAAGALAVGTSIFHTQVAEAAQLPEGE HCAPPSFPYPYVQLDPEKAKLDGYAGYGKSKCSYGAFEAVIGQLREKIGYPYTHVPTQ VLGWGGTGGGGWGTLCGALIGAATAINYTMPKSDADKVVSELFGWYCDHPFPEFMPEA GKALEYEGPIEKSVAKSPLCHVSVSVWCDASGLKAESKARSERCARVTADVAAKTVEL LNQFHSKNFKAVYKNEVVDDCMICHGKGHSLENTRGMMDCEQCHTDVDPNNLVDHIKK SWDLL" sig_peptide complement(3498385..3498498) /locus_tag="Dhaf_3269" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.967 at residue 38" gene complement(3499356..3500909) /locus_tag="Dhaf_3270" /db_xref="GeneID:7260286" CDS complement(3499356..3500909) /locus_tag="Dhaf_3270" /inference="protein motif:PFAM:PF00374" /note="PFAM: nickel-dependent hydrogenase large subunit; KEGG: det:DET0110 [Ni/Fe] hydrogenase, group 1, large subunit, putative" /codon_start=1 /transl_table=11 /product="nickel-dependent hydrogenase large subunit" /protein_id="YP_002459724.1" /db_xref="GI:219669289" /db_xref="InterPro:IPR001501" /db_xref="GeneID:7260286" /translation="MAKRIVIDPVTRVEGHLRIEVEIENNVVTNAWAQGTMFRGIEQI LQGRDPRDAVYITERVCGVCMASHGWTSAMAIEDAQGANVPRAAQLIRNLIAGSLWLH DHPLHFYHLSALDYLDVLAVNHYQGNVAELLAVKNKIMSLVTAGDTAPLTPRYQPDSY SVRDPEIVTTALAHYLEALKIQGKAKKMSAVLGGKQPHQSSIVVGGVTIYPRKEQLEA FRTLLNEVVSFAELTYVPDVVSFCTGPLLELGKAGVGAGPGGYIAYGGFPMDDSGIEK LFKGGFISSEAPGVVEALDMSRITESVASAWYKEGEPAHPWAGETVIDFDKKGAYTFI KSPRYKGETAEVGPLARMLVMQHSGLLDLMGRYGIKPGAVARHLARAQETLLITKSMY RWLDDLETLLGSKTVRPDIHDSKHWDPPAQGQGAALNEAPRGALGHWLKIDQHVISNY QMVVPTTWNISPRDEKNIPGPVEQALIGVPVDPDNPVNVVRVIRSFDPCLACAVHLID ADGEKIVKI" gene complement(3500910..3501860) /locus_tag="Dhaf_3271" /db_xref="GeneID:7260287" CDS complement(3500910..3501860) /locus_tag="Dhaf_3271" /EC_number="1.12.99.6" /inference="protein motif:TFAM:TIGR00391" /note="KEGG: tye:THEYE_A1943 uptake hydrogenase small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit" /codon_start=1 /transl_table=11 /product="hydrogenase (NiFe) small subunit HydA" /protein_id="YP_002459725.1" /db_xref="GI:219669290" /db_xref="InterPro:IPR001821" /db_xref="InterPro:IPR006137" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7260287" /translation="MKRDDQPMESGYQRLARRGVSRRDFLKLCTFTCAALGIDLSLAP QIAEAAEANLSKKPVIWMQGQGCTGCSESLLSSVDPGPEEIILDLLSVRYHPTLMAAS GEQAVQSLEDCIAQGHYILVLEGSIPTADSRYCFVEGKPFIEQFKLAAEKAEAVIAVG SCACYGGIPRAGFTGAAGAQEVLEGVKVVNLPSCPVKPDRLVGLLLYYLSHNALPKLD GLNRPEAYYRYTLHDSCYRRWHYEKGEYLEDWNNPDTLDWCLYHKGCKGQDTYTNCAN AWWNGGANFCGYAGSPCAGCSQPEYYDGFAPLFVNPKEVK" gene complement(3502246..3502629) /locus_tag="Dhaf_3272" /db_xref="GeneID:7260288" CDS complement(3502246..3502629) /locus_tag="Dhaf_3272" /inference="similar to AA sequence:KEGG:Swol_0320" /note="KEGG: swo:Swol_0320 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459726.1" /db_xref="GI:219669291" /db_xref="GeneID:7260288" /translation="MLRTYLIAGIIILILVLGGYWQNSYISESTYTLTEKLVNVEEQI RAKSWSNANQEIEKFSQDWNGIKKFWSILLDHQEIDEIELSLIRLEQYIKENETVLSL GELSALRLLVDHIADKGMITLQNIF" gene complement(3502656..3503354) /locus_tag="Dhaf_3273" /db_xref="GeneID:7260289" CDS complement(3502656..3503354) /locus_tag="Dhaf_3273" /inference="protein motif:PFAM:PF04239" /note="PFAM: protein of unknown function DUF421; KEGG: tte:TTE0476 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF421" /protein_id="YP_002459727.1" /db_xref="GI:219669292" /db_xref="InterPro:IPR007353" /db_xref="GeneID:7260289" /translation="MLITAIRTLILYFFVITALRLMGKREIGQLQPFELVVILMISDL AAIPSEDVGIPLISGIIPMMVLVLMSISLSYLELKSEKARDILNGTPSILIERGRIVE HELVRNRLPLTDLVEELRMRSIPNIADVEFAILETNGQISVLPKSSKRPVTPEDLKLQ PAYEGLPIVFIMDGILQESAFALSGKDRAWLDKQVKKHQLKGIEEVLFACLDSSDHLY LQGKERYTKKKQQA" gene 3503691..3504002 /locus_tag="Dhaf_3274" /db_xref="GeneID:7260290" CDS 3503691..3504002 /locus_tag="Dhaf_3274" /inference="protein motif:PFAM:PF08666" /note="PFAM: SAF domain protein; KEGG: gka:GK1959 hypothetical protein" /codon_start=1 /transl_table=11 /product="SAF domain protein" /protein_id="YP_002459728.1" /db_xref="GI:219669293" /db_xref="InterPro:IPR013974" /db_xref="GeneID:7260290" /translation="MKKQAVVIYEKDNVATCVDHIPAGTTISFFRGSQAESLTVCQDI PLGHKVALIPIAQSSHVVKYGESIGAATIDIQPGQHVHVHNMESQRGRGDLDTDKEGS R" gene 3503999..3505156 /locus_tag="Dhaf_3275" /db_xref="GeneID:7260291" CDS 3503999..3505156 /locus_tag="Dhaf_3275" /EC_number="4.2.1.7" /inference="protein motif:PRIAM:4.2.1.7" /note="PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: chy:CHY_1256 UxaA family hydrolase" /codon_start=1 /transl_table=11 /product="Altronate dehydratase" /protein_id="YP_002459729.1" /db_xref="GI:219669294" /db_xref="InterPro:IPR007392" /db_xref="GeneID:7260291" /translation="MNLWGFRRPDGLFGIRNHLLILPTSVCATTVAANIAAQVPGAVA IANQHGCCQLGADYEQTLRTLIGIGRNPNVGAVLVVGLGCEGIPILHTAEEIAKSGKP VQSLIIQEHGGTLKTTALGVQVAAQMARTLSMLKREEAPLSELSLGVECGGSDFTSGL AANPAAGTASDLVVKAGGTAMLSETTEFIGAEHVLAKRAKSPEVAAKLLGIVKETELR ARQLHVDLRDGQPTPGNIAGGISSIEEKSLGCIYKAGHSTIQDILAYGEAPQGKGLYV MDTPGQDVESMIGMLAGGIQIIVFTTGRGTPTGSPIAPVIKVTANADTYLNMADNIDL DLSPILSGAETIEDSGRRIFKEIIEVANGKLTKSESLGHQEFGIFRIGPTF" gene complement(3505241..3506098) /locus_tag="Dhaf_3276" /db_xref="GeneID:7260292" CDS complement(3505241..3506098) /locus_tag="Dhaf_3276" /inference="protein motif:PFAM:PF01435" /note="PFAM: peptidase M48 Ste24p; KEGG: cbe:Cbei_2213 peptidase M48, Ste24p" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_002459730.1" /db_xref="GI:219669295" /db_xref="InterPro:IPR001915" /db_xref="GeneID:7260292" /translation="MNGFGNQLKTVFLMSLLTVLVILAGNAIGGSGGMQIAFIFAMVM NFGSYWFSDKMALAMTKAQPISREQSPELYAMVERLADNANLPMPRLYMTPSPQPNAF ATGRNPNHAAIAVTRGLMQMLNREELEGVLAHEMAHIKNRDILISTLAAVMAGVITTL AHWAQWALMFGGVGGNDEEGASGLAALPLIILGPIAAMLVQMGISRSREYLADATGAE IAGNSSGLANALQKLERSSAAIPMNVNPSASHMFIVNPLNARRVANLFSTHPPIEERV KRLYTMERR" sig_peptide complement(3505241..3505330) /locus_tag="Dhaf_3276" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.894 at residue 30" gene complement(3506147..3507460) /locus_tag="Dhaf_3277" /db_xref="GeneID:7260293" CDS complement(3506147..3507460) /locus_tag="Dhaf_3277" /inference="protein motif:PFAM:PF01595" /note="PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cac:CAC1422 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF21" /protein_id="YP_002459731.1" /db_xref="GI:219669296" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002550" /db_xref="InterPro:IPR005170" /db_xref="GeneID:7260293" /translation="MFLVALNAFFVAAEFSLVKVRKTRLAELSESGSRKATLALAVTS QLDAYLSACQLGITLASLGLGWLGEPAIATLLAPLFKNLVAWDGVLTHTVSVVIAFLL ITFLHIVLGELVPKSIAIQRAESAALWTAGPLKMFYKLFYPVIRFLNGLANLILKLGG ISPANESDLAHTEEELRMLVDASQRHGILDKMEGKLLDNVFEFSDRVVSEVMVPRQDM MCLYIQDSMEEVLETVKTSGHTRYPLCDDDKDNVIGLVHMRDLLSLSESSVKNIGELK RDILIVPEGMPISHLVQKMRVQRTHLAVVVDEFGGTAGMVTIEDLIEELVGEIYDEFE SAEQAEIIKSGESEYLINGRVLLDDLSELLAVEFEDETVSTIGGFVFNRLGRKPVKGD RIDFMDYTFTVMEVVGFRITRVKASRRPAPDSADMSPDTREDSGK" gene complement(3507543..3507914) /locus_tag="Dhaf_3278" /db_xref="GeneID:7260294" CDS complement(3507543..3507914) /locus_tag="Dhaf_3278" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459732.1" /db_xref="GI:219669297" /db_xref="GeneID:7260294" /translation="MDDDPLPARAVPYHDVLARIEQGKTKQFVAIVLCLFLGLALAFY PCVAFEQPQKGLWILKYNSSINQAPRAVIFGALAVLPQKIDLDSVQLPQMWEINRGTT EDPVQKQKHWIVMVWYGSTYV" gene complement(3508054..3508557) /locus_tag="Dhaf_3279" /db_xref="GeneID:7260295" CDS complement(3508054..3508557) /locus_tag="Dhaf_3279" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459733.1" /db_xref="GI:219669298" /db_xref="GeneID:7260295" /translation="MSKSLSFTLSFSEEDEPLWGFLHSFPREQWEGILKEALRAYSAN HPATEDLPPATVGRWSLEELYAAPSGKDSLSMDNPQPLKHLWELIGEEEDEDVLELLL QPQAQNPEKFPERDALPPKADKEPQKYQDSESANGLAFLLHQVIGEEEDPDVLSFFAS SENRKET" gene complement(3508554..3509663) /locus_tag="Dhaf_3280" /db_xref="GeneID:7260296" CDS complement(3508554..3509663) /locus_tag="Dhaf_3280" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: nth:Nther_2354 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459734.1" /db_xref="GI:219669299" /db_xref="GeneID:7260296" /translation="MFENDILVAGGDPGFGAIKLDAGDTKVLFPAVICKGNERIFSAL GNGNVSRGTDEEMQIGSLDVIVTNHSTGVSRHYFMGSLAESLNPNEAHYCWDEDKSTD EEATALLVVALAVAQKEPKANIYLGTGVPVKYYAALKDKYEAELKGTWSVAFRSGPFK GQTRQLTIIRSRVLPQSYGVFIKETLNEYGIPISPKLFNGYVVVIDPGFRTTDVATFY DGVMLDPPNSFSIEKGLKWAYTGVAEQLKEMTINHANPIETDDKELDKVFRVNEGMYP WNNGAINLNPVMQDMLGQLGTDISREVKKSLKPMLGKIHTVLVAGKVGEMIFEHLQFE NKVLIENPQFGNATGFRIMAANLVNNITKKANAAP" gene complement(3509752..3510930) /locus_tag="Dhaf_3281" /db_xref="GeneID:7260297" CDS complement(3509752..3510930) /locus_tag="Dhaf_3281" /inference="protein motif:TFAM:TIGR02887" /note="TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: pth:PTH_1838 hypothetical protein" /codon_start=1 /transl_table=11 /product="germination protein, Ger(x)C family" /protein_id="YP_002459735.1" /db_xref="GI:219669300" /db_xref="InterPro:IPR008844" /db_xref="GeneID:7260297" /translation="MSNGYMKRSVILVSLFSLLLLPGCWDHRELNELGVVSALGLDLN ERGKIQITVQVINPQAYITKGQEGKAQTRILTSEGETFFDAVRGLMTKSGDRLFYPHN QVIVIGEDLARAGVKPILDFLERDPEIRLFTWVLLTEGKAEEVVRAPSDESLISAMHV MLLVDDYYSASKSIPRNILEFATMVYSEGIEPVLGKIEFYEEKGNPTYQLIGGGAFKG DKLIDWLDAGEARGYLWVHNDVNGGIITAYTKEGAENQAQADGSSGLGERISFEIIRT KSRVKPVLEGEKLSFVIDLDVTCNLGERTDNKETITKEDFKELEKILSQAVIGEVQGI VDKAQKELRSDILGFGLTTKRKYPDYWNQHKEQWEEMFPELEVEILVKAVVDGQGTVR" gene complement(3510937..3512436) /locus_tag="Dhaf_3282" /db_xref="GeneID:7260298" CDS complement(3510937..3512436) /locus_tag="Dhaf_3282" /inference="protein motif:PFAM:PF03323" /note="PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA" /codon_start=1 /transl_table=11 /product="GerA spore germination protein" /protein_id="YP_002459736.1" /db_xref="GI:219669301" /db_xref="InterPro:IPR004995" /db_xref="GeneID:7260298" /translation="MSNKHGSNISPNLEENRRRFINSFKNSVDLLFRELRFGKTNKGF LVYLDGLVDRQYMSSSIIRPLMACQGSEPILSMDILQKDVLCNSAIDIVQVFDQAVQG VLSGQTALFLEGVEEVLLLETFGGETRNVQQPETEATVRGPREGFVERIEVNASLLRR KIKDQKLRLETMNLGERTHTKIYMAYIEGIANPKIVGEVKRRLQSIDIDGILESGYIE QLIEDSPQSIFPTVGTTEKPDKLAAKLLEGRIGILVDGTPFVITVPYLFVEAFQNPED YYSRPYYASLVRLIRYLAFYFSTTLPAFYVAIQSYHQEMVPTSLLISMSAGREGIPFP VIVEALGMGIVYEILREAGIRMPHTVGQAVSIVGALVVGEAAVQAGLINQVMVIVVAL TAISGFLVPPFTGPASLLRLYFLVTTSFLGMFGWLMALLALVIQLLSVRSFGIPYLSP IVPTNIGDLKDGMVRFPLWFMLSRPSLLSPYRRQSTKNMKKSLRKIKGS" gene complement(3512426..3513532) /locus_tag="Dhaf_3283" /db_xref="GeneID:7260299" CDS complement(3512426..3513532) /locus_tag="Dhaf_3283" /inference="protein motif:TFAM:TIGR00912" /note="TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: pth:PTH_1839 hypothetical protein" /codon_start=1 /transl_table=11 /product="spore germination protein" /protein_id="YP_002459737.1" /db_xref="GI:219669302" /db_xref="InterPro:IPR004761" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260299" /translation="MNIKISSRQSFCTYFVIVSLSIGMPNLIIRDLEQDFWQALLVAI VIETMLGFFLYKMGRTYANQTIFQYSEKILGKILGKISVGMFSLYFISVAITLTQSLM EFFGSMAMPETPRYVFAILLLLVSTYACSAGLEVIMRLSEIVAPFVLGSFLFIMLFNI GNMEFDNLRPMFQHSLGEILRGAMLPTAWFGICIIMGVLMAYHNNPKVMYKIKLMGVG LGILTITTSMFFVITVIGVEMGSRQLYSVYILARLVDVGDFIQRMEAFQIVSWTAGSF LILALFHYAGVEGLKHIFPKKSRMFLGISIAVIVFVVSVFVTPTAIDRSTFLKNILGV YGLVVEICGVSLLFIIYVIKQKFKAVKKRSSNEQ" gene complement(3513664..3515043) /locus_tag="Dhaf_3284" /db_xref="GeneID:7260300" CDS complement(3513664..3515043) /locus_tag="Dhaf_3284" /inference="protein motif:PFAM:PF05673" /note="PFAM: AAA ATPase central domain protein; protein of unknown function DUF815; SMART: AAA ATPase; KEGG: mta:Moth_2317 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF815" /protein_id="YP_002459738.1" /db_xref="GI:219669303" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR008533" /db_xref="GeneID:7260300" /translation="MNRTKITRLSLLFDGMVVFRGIIGDPVAVSFQKLLQGIGSREFD LMAIYKDYHHFCSLATQAHWPDYLWERMLQDDNELARQTAQQGKDRVPAGLRRLAGRE LLYLRELAGLKAEDIKGAVKARCAEQGAEEPGLWLEEPLSPESWPGWLSLPDMDREKE TYAKEENRAENYLLSSQKKLKQSLLRGRSEEMVDALLAYYQTMGTGLFGRCMALKWRG RAERLEGVHPEPMRISKLINQEREQGIILQNTEFFLKGLPANNVILYGNRGTGKSSLV KALVQEYGEQGLRLVELSKTDLHDYPKIIRLLAKQPLKFILFIDDLSFEDTESDYKNL KTLLEGGLEGKPQNVLIYATSNRRHLIRETFGERQVEEVHRRDNMEEKLSLSDRFGIT VTFPTPDQEGYLKIVEELATQEGLTLPKEELRQQALRWVMNHNARSGRTARQFVDFLV AREGLAAQQ" misc_binding 3515165..3515338 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 100.25" /bound_moiety="adenosylcobalamin" gene 3515468..3516574 /locus_tag="Dhaf_3285" /db_xref="GeneID:7260301" CDS 3515468..3516574 /locus_tag="Dhaf_3285" /EC_number="2.4.2.21" /inference="protein motif:TFAM:TIGR03160" /note="KEGG: pth:PTH_0931 NaMN:DMB phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase" /protein_id="YP_002459739.1" /db_xref="GI:219669304" /db_xref="InterPro:IPR003200" /db_xref="InterPro:IPR017846" /db_xref="GeneID:7260301" /translation="MDDFLRQENLSDASLEECETALDHLIQGIHGLDEQVMAAVQTRL DSLTKPQGSLGVLEALAKQLGGIQGQPWPEVQKKAILVMAGDHGVVAEGVSAFPQEVT PQMFYNFLGGGAGINVLARHAGAEVICTDVGMAFPLDPPELMAHRIMNGTHNMAQGPA MSRKEALLSLLTGAKIARQAIDSGVNVLATGEVGIGNTTPSTAIISLLTGLPPQEVTG RGTGLDDEGLIRKQNVIARSIAINQPDPKDGVDILSKIGGLEIGALAGAILTAAYSRV PILLDGVISTAAALIAVRICPTARFFLIPSHSSAEIGHRAALEQLELKPIMHLDFRLG EGTGAAIAFHLLDASIRILNEMATFESAGVSGKN" gene 3516594..3517208 /locus_tag="Dhaf_3286" /db_xref="GeneID:7260302" CDS 3516594..3517208 /locus_tag="Dhaf_3286" /EC_number="2.7.1.156" /inference="protein motif:PRIAM:2.7.1.156" /note="PFAM: cobalbumin biosynthesis protein; KEGG: hmo:HM1_2396 bifunctional adenosylcobalamin biosynthesis protein CobP/CobU" /codon_start=1 /transl_table=11 /product="Adenosylcobinamide kinase" /protein_id="YP_002459740.1" /db_xref="GI:219669305" /db_xref="InterPro:IPR003203" /db_xref="GeneID:7260302" /translation="MSDFVLITGGARSGKSRFAELLAAHPGLPVTYIATAQVYDEEMA LRVKKHQDQRPAHWGLVEEPLALSSVLERHAQNKGVLLVDCVTLWLTNLLLAHYPAED HLTEQEYTRALHRLEQKILEQVRIVARIARDITPQVIMVTNEVGDGIVPDNPLSRIYR DLAGRANQILGQSAQQVYSVVAGYPTEIKAAGQALLDSLRREDA" gene 3517210..3517965 /locus_tag="Dhaf_3287" /db_xref="GeneID:7260303" CDS 3517210..3517965 /locus_tag="Dhaf_3287" /inference="protein motif:TFAM:TIGR00317" /note="TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mta:Moth_1102 cobalamin-5'-phosphate synthase" /codon_start=1 /transl_table=11 /product="cobalamin 5'-phosphate synthase" /protein_id="YP_002459741.1" /db_xref="GI:219669306" /db_xref="InterPro:IPR003805" /db_xref="GeneID:7260303" /translation="MRKLWIALTFLTRIPLPQPEQVTSEEFTQSQHYYPLVGLILGGA LWLALTLLLPHYPPLVTAALLLALELILTGGIHLDGLMDSMDGLLSARTPERMLEIMK DSHVGAFGALSAMVYLLLKFSLLAGLLALSSPLVPYLVLFMPILSRWIFLIGVHYFPY ARAQGFGQGFHETSRQTRWLFLGEGLLLLFLTYWVLQWPGIAGFILATLFILLFTRKV SRLLGGLTGDLYGASIELSELLFLLGAFPLLYP" gene complement(3518141..3519301) /locus_tag="Dhaf_3288" /db_xref="GeneID:7260304" CDS complement(3518141..3519301) /locus_tag="Dhaf_3288" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: amt:Amet_0031 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, GntR family" /protein_id="YP_002459742.1" /db_xref="GI:219669307" /db_xref="InterPro:IPR004839" /db_xref="GeneID:7260304" /translation="MKYAKWMKNVGEGFIGEMLRAAQNPAMISFAGGLPALDLFPTQD LQAAFQKVFEEQGNAALQYAQTAGYPELRSWVASQHQRSQRPARTAEVIITTGSQQGL SLLAQTFLDPGDTVFLETPTYLGAIQAFEGFRADFQMIPCDEEGILPDELEKALAFTT PKFLYLIPNYQNPSGRVMGLERRKELLKVSQKYGLLLVEDNPYGELRYEGEPIPHLAE LGENVIYLGTFSKVLAPGLRIGYVLADEDIIMHLEQTKEGVDLHSNNLTQRAIYEYLQ KDLLPDHILKLREVYNVRRKAMVESIQTYLGDRVEMKVPAGGLFLWAKLMGVNNSFDY VQDMIRQNVLYVPGALFYADGRVSNEMRLNYSCSTPEIIEEGMRRLARGLNQ" gene complement(3519363..3519884) /locus_tag="Dhaf_3289" /db_xref="GeneID:7260305" CDS complement(3519363..3519884) /locus_tag="Dhaf_3289" /EC_number="3.4.21.89" /inference="protein motif:TFAM:TIGR02227" /note="KEGG: syp:SYNPCC7002_A1435 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="YP_002459743.1" /db_xref="GI:219669308" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR011056" /db_xref="GeneID:7260305" /translation="MKKYLRTILEWGILIVVAWVLSFGIRTYLIDTRIVPTGSMLPTI QLQDRLIFDKVFYKNKPLQRGDIIMFTAPEGSGEHDDLVKRIIGLPGDTLEVREGKVW INGEAIEEPYLKEAPEYEYGPIQIPEGAYLVFGDNRNNSKDSHVWGFVPEENIEGKVL LRYWPLERWGALK" gene complement(3519999..3521420) /locus_tag="Dhaf_3290" /db_xref="GeneID:7260306" CDS complement(3519999..3521420) /locus_tag="Dhaf_3290" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mex:Mext_0136 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002459744.1" /db_xref="GI:219669309" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7260306" /translation="MQLQSIEKRVSSGHSPSCAEILLSTIQEMNREENLLKALDLFTQ RSLVLFDCDVAAIYLLEQGKYKPFSVSFRDDKDRETLMLREFPQDFREIGTEVVETDE EWVLALSHFGKTLGAYVLKGRRSQCRDEGSAVFVKQVISIISSFIFERILKIDSLSRE QALTLLLRGTEILVRADSEEQLLSEAGEMAMEILFLPGGFFLLEGAGGTWEIRSPFGR LKQEMEWDWRTWVRQYISKEECCLRSAKVHFFDIENNPFKWERVWIHPLQTHSGVVGE LWLMNAGKYLNDQEQEILTAFIRVVGVALETIRQREELARLANTDRLTGILNRQGFEQ RVREEIASTLRRDSRFLFLVLDLDRFKQLNDTLGHPMGDRALKEIAQNLRCAVREQDI VARTGGDEFTVVLTDIALNEESLTVIERMRKSMHLEEYNLGVSIGVAEFPTEGRTYDE LYRLADQRLYRGKNSGKGNIIAD" gene complement(3521658..3522800) /locus_tag="Dhaf_3291" /db_xref="GeneID:7260307" CDS complement(3521658..3522800) /locus_tag="Dhaf_3291" /EC_number="2.7.1.31" /inference="protein motif:PRIAM:2.7.1.31" /note="PFAM: glycerate kinase; KEGG: gtn:GTNG_3399 glycerate kinase" /codon_start=1 /transl_table=11 /product="Glycerate kinase" /protein_id="YP_002459745.1" /db_xref="GI:219669310" /db_xref="InterPro:IPR004381" /db_xref="GeneID:7260307" /translation="MHVLIAVDSFKGSLSSQKAGEAITLGIQRVFPEATAEIISMADG GEGTVEAIVHAGRGKVLKTRVTSPLGEEAEAIMGRLPDGTIVLEMASASGLPMVPRHK RNPLLTTTRGTGDLIRAALALQPREILIGIGGSATNDGGAGMAQALGARLLDREGQEL SPGGGCLDQLARIDCSELDPRLKETKITVMCDVDNPLCGPRGASAVYGPQKGATPEMV EILDGNLAHFARKIREDLGVDLKDVPGAGAAGGLGMGLLAFTGAQLKTGVEAVLDTVN FDGKLQQADIVITGEGRIDGQSVYGKVPMGVAKRALQYGKPTLAIVGSIGAGSEALYE HGISSILTIVNGPMTLEESMERAFDLTVDAAERGFRILKMAYSDKR" gene 3523189..3523878 /locus_tag="Dhaf_3292" /db_xref="GeneID:7260308" CDS 3523189..3523878 /locus_tag="Dhaf_3292" /inference="protein motif:PFAM:PF03741" /note="PFAM: Integral membrane protein TerC; KEGG: gtn:GTNG_0523 hypothetical protein" /codon_start=1 /transl_table=11 /product="Integral membrane protein TerC" /protein_id="YP_002459746.1" /db_xref="GI:219669311" /db_xref="InterPro:IPR005496" /db_xref="GeneID:7260308" /translation="MELFSPEFFQALFAIVIMDLVLGGDNAIVIGMAARNLPKQQQKK VILFGTGGAILIRTLATLVAVYLLKIPGLMFAGGLLLVWMAYKLLTDEKHDEQVDSAA SFWGAIKTIIIADAVMGLDNVLAVAGAAHGHPILVVFGLLISIPIVVWGSTLVIKAIN RFPVIIPIGSAVITHTAVTMLVHEKFVVNIIGESALIEWGLSAVLIAGVLYLGHRTNK KKVLEAAKNAA" gene 3524038..3524640 /locus_tag="Dhaf_3293" /db_xref="GeneID:7260309" CDS 3524038..3524640 /locus_tag="Dhaf_3293" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: ckl:CKL_3748 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002459747.1" /db_xref="GI:219669312" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7260309" /translation="MMPEIHIPEDKKQRIIRAALEHFAKNGYKKTTMDEIVAAADISK GLIFHYFGNKKKLYLYLYEFVYGLVYDRIVKSFEQEDLFERIRESERIKLAVVNEYPY VLDFLLSVRRETDESLREELSRVKVKSFPPWQETFLPGLDTSKLREGIDLEKVTKIIS WTTDGLLSEHKDDFVLEDIFVEMDEYLNLMRKAFYKEEYQ" gene 3524637..3527150 /locus_tag="Dhaf_3294" /db_xref="GeneID:7260310" CDS 3524637..3527150 /locus_tag="Dhaf_3294" /inference="protein motif:PFAM:PF01326" /note="PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: bld:BLi00634 phosphoenolpyruvate synthase" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="YP_002459748.1" /db_xref="GI:219669313" /db_xref="InterPro:IPR002192" /db_xref="InterPro:IPR008279" /db_xref="GeneID:7260310" /translation="MKRLLNLSDSAAGDISLTGGKGANLHRLSALDGIQVPGGFVVTT DAFRELCAGVVGSRGEALEASSPAELARAGADIRQAIRDIPIPEEFLRELETALASYP PDILFAVRSSATAEDLPDASFAGQQDSYLNVRAADVPRAVLDCCASLYNDRAVAYRRK NGYRHEDVAIAVVVQEMVPSQVSGVLFTADPMTSDRLTCVIEAVVGLGEELVSGRKTP FTWRLRGRKINADSKTPPPLSDSQLEEFAAIGKGIEAAFGAPQDIEWCWVNGGFFIVQ SRAITTLYPLPESRDGLKRVFVSAGHMQMMTDVMLPLGMSFMKLIALFRMVEVGGRLF IDITHDLKTAYGKKMIRTKLAATDPLTHQAIEQVLARQDYIRGIPKGPGSFSSFSGWL PIVREGIRLYRRNDPADIDLYIQRMERLIARLEEQLEPLAGTAAIEAILEDQKQLSAI IYDASGFGMVLATQFIIRKIDAMGKTLTGEENISNRLSKSVEHNPTSEMGLALSEVAD LAREHPPVVKYLEAAGEAFRLDDLRQVAGGGAVADAFESFLGHYGMRATGEIDIAKTR FRENPAELVGAMLTNIHTLPKGHGKSSFEQGRLEMTRLTEELVALAEQKLGSRQAKRL RRYISFFRNYLGTREYPKYFWICRYDVYKRTIMREANRLVEQGILQEPGDIFYLYLEE LRQAIQTGRVDYTNIARRKRDYSHFANLTPPRVIFSDGEVPEMAYQKNIPRGALPGLG VSSGVVEGRARVIQSIEDAVMEKGDILVTSFTDPSWTPVFVSIAGLVTEVGGMMTHGA VITREYGLPAVVGVVGATRLIRDGERIRVNGDEGYVEIL" gene 3527281..3527907 /locus_tag="Dhaf_3295" /db_xref="GeneID:7260311" CDS 3527281..3527907 /locus_tag="Dhaf_3295" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: nth:Nther_0322 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002459749.1" /db_xref="GI:219669314" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7260311" /translation="MHENFVGLKAEKRDAIINAALAEFAAKGYDLASTNEMVRAAGIS KGALFHYFASKRELFFFLCDYVYEVVNREFYEQIGHCEGDLLTRYARAARLKGSVYLR YPPLFEFVKKLAQEKSAEIAGELAQKLSRITEAGYSHLLGNLDESLFRQDVPMGKLRD LIIWALENYGYRTMELVQDQPLAEIDMEALNADFDEYLDVLRKCFYQQ" gene 3527919..3528662 /locus_tag="Dhaf_3296" /db_xref="GeneID:7260312" CDS 3527919..3528662 /locus_tag="Dhaf_3296" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459750.1" /db_xref="GI:219669315" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260312" /translation="MSAIEIRGLKKRFGRTMALDGLELSVPGGGIYGFIGPNGAGKST TIRMVLGLLNKDEGEVRLLNGNPRRDAVELHKRLAYVPSDVQLWDNMTGGEVIDFLGR LRGSYTKKRRAELIEHFDLDPTKKCRTYSKGNRQKVLLISAFVSDVELHILDEPTTGL DPLMKTVFQQCLREAKDAGKTVFLSSHILSEVEAVCDTIGVIRAGRMIEQGSMEDLKA LISQQDPPTLETLFMNYYRKDGKDEERGR" gene 3528665..3530248 /locus_tag="Dhaf_3297" /db_xref="GeneID:7260313" CDS 3528665..3530248 /locus_tag="Dhaf_3297" /inference="similar to AA sequence:KEGG:nfa24760" /note="KEGG: nfa:nfa24760 putative ABC transporter" /codon_start=1 /transl_table=11 /product="putative ABC transporter" /protein_id="YP_002459751.1" /db_xref="GI:219669316" /db_xref="GeneID:7260313" /translation="MKRYFQGTAAIMTLSMRQNRVFTLAWLLLPGLWVAINTLSSLVL FPTQEALAEMGVTLIDPLTVAIHGPLLDVSVAGFVTWRTKVFLVLASGIFSMIYVVRH TRLAEEQGKRELLEANVTGSLAALAAALLNMLLINAAAALLALLGMTALGLGFTGSLA HCLGFLAAASALGLMAGLVAQFFVGASAARGTSFGCLGLLFALHILWNVSGGNHPAAY LNPLEWPLLIRPFAGERFSVLLISLIIMILPAALSLWMTHKRDVGAGLIPQREGRAFA KPGFCSLPALAWRTQKGLFLSWLIFYAVFSFALGCASYLMVSAVSSAKTLAELIARLG GVDRAFMSLMLYIVSMLISVYVLMSAGILRREETAKGELLLSLPVRRSRFAFGHLVYI FGGSAALALVSGLCAGLGAMIGTGDQSALVRLFFEMAGKIPAIWAFGGISMLLFGVLP HWMSGLSYGLMVLFVLLEILWEQQSVSDAVYALSPFSWVTPLKVAQPPSVLVLLCALS MLSAVLGIVLFERRDAAMH" gene 3530497..3532617 /locus_tag="Dhaf_3298" /db_xref="GeneID:7260314" CDS 3530497..3532617 /locus_tag="Dhaf_3298" /inference="protein motif:PFAM:PF04122" /note="PFAM: regulator of chromosome condensation RCC1; putative cell wall binding repeat 2-containing protein; KEGG: mxa:MXAN_0889 RCC1 repeat domain protein" /codon_start=1 /transl_table=11 /product="putative cell wall binding repeat 2-containing protein" /protein_id="YP_002459752.1" /db_xref="GI:219669317" /db_xref="InterPro:IPR000408" /db_xref="InterPro:IPR007253" /db_xref="GeneID:7260314" /translation="MKVKYFSKKISIVLALLVMFSSLPNVPVSADPNPLNAVIPKYQE ERQFGFSAGGLHTVWFDTSHGGDVTASGNNDYGQLGDGTTISRSLPVTINNLYSRVAD ISAGGTHNLALIDDQTVRAWGNNQKGQLGIGSDINSLIPVEVPGLSEIIAISSGFDFS LALKNDGTVYSFGSNEFNQLGDSSVGSRNTPAQIPGLDSIVAIAAGGTHALALHMDGS VYAWGSNERGELGDGGSASGYQPVKIASLSNITAISAGLRHCLALGADGSVYAWGDNS LGQLGDPKISDYSNVPIKVQGIKAAFRIAAGYNSSFIIAQQNATYGFGDNSANQINSS AVENLSSPTLLNIKASFISPGWGHTVSRGFLGNDNGVDNWSWGYNQFGQTGNGLTEHV LNPTAPYSGTNRQPVFFRISGANRFKTAVAISIEGWDYGAATVVLARADNFPDALAGT PLAYGLNAPILLTDSARLSNDTKDELDRLAPQNIIILGQEGAISSSIEKDLQKHYKVT RVGGQDRYETAAAIAQYMHDHHLILGNKAVIAYGENFPDALAVSSVAAHAHMPILLTK KDVLADAAGEALKRLGINETFIVGGTGVVGTAVESSLPLPTRYSGNDRYATAIAIANG MGTDPYLVYLATGTNFPDALAGSVLAARSNSPIILVNSSSGAEAAAQWFWWNSRDIKQ SYVLGGSGAVPDSVIESIYSRIGY" sig_peptide 3530497..3530589 /locus_tag="Dhaf_3298" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 31" gene complement(3532934..3533719) /locus_tag="Dhaf_3299" /db_xref="GeneID:7260315" CDS complement(3532934..3533719) /locus_tag="Dhaf_3299" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_2295 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459753.1" /db_xref="GI:219669318" /db_xref="GeneID:7260315" /translation="MKKHSCLLLCTVAIGLIFLSGCASAGGSSTAGTNTIIKADSGQS PETTDWESTTHEIVNNFEGVTMGVKEGTVSLSGLTLNFTNSSDKQCIYGDYFLLEKRV NGKWYQVPTIIDNYAFNDIGYDLATGGNGEWRVDWGWLYGELEPGDYRIVKDISDFRG TGDYEKYYLTAEFSVDERTKSADLAPMVMIKGKLYQDTGKESDIKARCGVMDGEVTST VGPFEKPTQDNQSNFGSEYGYQFVDERSVDIFMNEKWLRFELL" sig_peptide complement(3532934..3533011) /locus_tag="Dhaf_3299" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.488 at residue 26" gene complement(3533880..3534203) /locus_tag="Dhaf_3300" /db_xref="GeneID:7260316" CDS complement(3533880..3534203) /locus_tag="Dhaf_3300" /inference="protein motif:TFAM:TIGR02385" /note="TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: amt:Amet_0378 addiction module antitoxin" /codon_start=1 /transl_table=11 /product="addiction module toxin, RelE/StbE family" /protein_id="YP_002459754.1" /db_xref="GI:219669319" /db_xref="InterPro:IPR007712" /db_xref="InterPro:IPR012753" /db_xref="GeneID:7260316" /translation="MKYKIRINPMAIADVQEIKTYIAEDNPEAAIQMGAVIYSKIENL ADFPEMGVSLGAKINLKTDYRFLVCGAYLVFYKIEGEFVSVYRILNGARDYLTVLFSE EPSEN" gene complement(3534206..3534454) /locus_tag="Dhaf_3301" /db_xref="GeneID:7260317" CDS complement(3534206..3534454) /locus_tag="Dhaf_3301" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; KEGG: amt:Amet_0377 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002459755.1" /db_xref="GI:219669320" /db_xref="InterPro:IPR006442" /db_xref="GeneID:7260317" /translation="MPNIKPVSDLRNYNEVLRSCQVGEPVFLTKNGRGRYVLMDIQEY ERQQAVVKLLSKLAEAEDIIETGKEWRTLDDLKKALEV" gene complement(3534787..3535365) /locus_tag="Dhaf_3302" /db_xref="GeneID:7260318" CDS complement(3534787..3535365) /locus_tag="Dhaf_3302" /inference="similar to AA sequence:KEGG:Amet_1784" /note="KEGG: amt:Amet_1784 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459756.1" /db_xref="GI:219669321" /db_xref="GeneID:7260318" /translation="MYKNILTPKFFKDNPVKNLTAQQFVYGQIEIPELSEVAADVVRK YDERADEEREEILRENDLDMLLKRLKGKCEPLNSHLVLQKAMEQEELIIPRILELLKT SLNDVFIENAVKILANTGKDYAKTLLEMFDEIRSPYASSLVCIALGFIADEDAIPVLM KKYNEFKSLYPQENYEQGPLLGLIKLNERFYT" gene complement(3535603..3536526) /locus_tag="Dhaf_3303" /db_xref="GeneID:7260319" CDS complement(3535603..3536526) /locus_tag="Dhaf_3303" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mma:MM_2977 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459757.1" /db_xref="GI:219669322" /db_xref="GeneID:7260319" /translation="MTGEELMSVSETTARRRNLLVSIVRGILKEKYEVTREFTVAEIE TVFHFRKRDIAYNLDFFFEQRSGKFILKTEKLDEAQKIIRNHHQALGQLETAKVLFIK SFGRFYDDYETSEGFSFDHERLRRIFSDLHPVIPILHWGMLPILSKWLMINSGRLPEN DIIDFYDHYHMLTALLKEIRGRGETMETKGDDTLNKEMTFSVYTRRWGHPNVYRIERT VDGWEVRHIAINGKCAKDGEGALMRNLHHDSIFFPEEGVKCALSNLWDDAEDGEIGLE ELQIRLQQVADWISSVEKAVGENQPDWVQYC" gene complement(3536523..3537584) /locus_tag="Dhaf_3304" /db_xref="GeneID:7260320" CDS complement(3536523..3537584) /locus_tag="Dhaf_3304" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: swo:Swol_1677 Fe-S oxidoreductases-like protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459758.1" /db_xref="GI:219669323" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260320" /translation="MGSCLIRNCRESGYILGFDRDEGTFIRYGKNGSDPFSNAIGPEL LDIAITNYCERECDFCYRASNRQGSFIHLEDYEFIMEQAEKAGVLQVALGGGNPNQHP QFVQILQKTRSHKIVPSYTTNGQGMTDEIYGATKQFCGAMAVSWYEPYADAQEVIKRA GAYGIKVNIHFMLNKLSLPQAMELLEKHADLLESVNAIVFLNYKPVHSSDALCLRDGY EIKDFFEMVKKVKNCKIGFDSCMISFLPLMGDGLLKETVDFCEAARFSAYISENLLLY PCSFMNDISGKGIDLRRHSLQDGWRFGEEFIKMRERLSRPGAQRHAILACQTCENYGM CHGGCPFFNINRCRGELTP" gene complement(3537584..3538000) /locus_tag="Dhaf_3305" /db_xref="GeneID:7260321" CDS complement(3537584..3538000) /locus_tag="Dhaf_3305" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ckl:CKL_1647 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459759.1" /db_xref="GI:219669324" /db_xref="GeneID:7260321" /translation="MKIRQGFVTNSSSTSFIISMKDDLDKEGFIKGIGVEGPSPMSRI FEELYEAVEENKQDIMKYMKESRTAYGSVAEFLQEESYDEETIRIVEKLLAENRKVYY GKLHSDGYSAAEVYFCMESFLICEDDLYFNGKIGGW" gene complement(3537997..3538398) /locus_tag="Dhaf_3306" /db_xref="GeneID:7260322" CDS complement(3537997..3538398) /locus_tag="Dhaf_3306" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459760.1" /db_xref="GI:219669325" /db_xref="GeneID:7260322" /translation="MRILKLAGEYYCIADDSFAYAELEKRISSALHLQKGSFAEFYTK RIFQSFFQYARDLKKEYLTYYGQEYDSFADYLYKKELLDWAHMEFIDLNEQQTLFKLN IDLSNYNTRSLIEYEDKGIDILNQALEEIEL" gene complement(3538412..3541201) /locus_tag="Dhaf_3307" /db_xref="GeneID:7260323" CDS complement(3538412..3541201) /locus_tag="Dhaf_3307" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bvu:BVU_2098 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459761.1" /db_xref="GI:219669326" /db_xref="InterPro:IPR000408" /db_xref="InterPro:IPR008256" /db_xref="GeneID:7260323" /translation="MEKYIVKVRSYLREECIEYGTGIMIGRNLVLTPRHVTCGERHTV WVGGKEEESCVVNENNVAVVLEIGNSDDSYCIADIFSDDEVLDEESRWSVSGFITSQQ CEHHVRGTGIIISPVKDEEWDYHLAAITAGIADNYQGLSGSPVFCDHRIVGILQMQAY NSSGALGVRMSSVEMFQDLLAKENFKPNAYHMLLKEACVQYTRSQIDKNVKSKKYIAD IFVEEGDYKENLRYFADPMLFLKKAIRDAKMLDFKNVNFYLGKQGKQEIDFSDLTENF SVTELEPLHSCLGDRVSDGISLLAELDKYFYSDTSSLEESYDLRQNSLNNSVKYYLSD IKDNIDFIEKKYILLTKDAGQGKTNFVCDFTANFLMRKGYCALYFNAYDFRENPIALL KQKLSLDGVYSFSYGNKILRREWNRTKKPLVVIIDGLNENSLVKNFGQCIRDFLEECQ AYPYIKVIMTTRNEFLKERFEVIEEGTYSRAYKHIDMWQRSDDFKGRIFRGYLNFFGI TIRENTLTNRFYDALTSDVLLLRFFCEANEGKKQIYVYDVYKYDVFRQYLNLKSQEYQ KDQPVLNPQDSLYTLLDKISEYMIRKKTFFNVPSGIFNKSEQELLYQMLDNEVIFKDE QILKTGMLMKNTIVISFTFDEFRDFCITNYILTHLAEQDAFLSFWDQMNEENLTIREG VQKYIFYLARTESQEDLLPIIEALPEYENLYWLYIWGLEDRHFTAHDKEAWRMQLVAN GPHAEKVVHDLLGKYDCEFFGKINIRLLFEALDVLAEKIDLYDAFIKRMFGVYREKKG AYNNPRPESVWPFNRMIQRIAEDVNDDAWNVRHSEWYRLSIYLLELENRGALDLWCKL YEVSPEVAVRILEEMNRHQSSLILGNVKEILQHLEKFRKGEPWDQRIERLAQENSFCR DIPGGRELFSKLLFD" gene complement(3541214..3542395) /locus_tag="Dhaf_3308" /db_xref="GeneID:7260324" CDS complement(3541214..3542395) /locus_tag="Dhaf_3308" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: cbt:CLH_1296 Zn-dependent hydrolase" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002459762.1" /db_xref="GI:219669327" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7260324" /translation="MGNCIVHFLPAKAGDCFVVEFDNGECILVDCGYKSTYESELKPL LTQLKHKGRRVILMLITHIDQDHLEGAIAFLRENGPANAPHIIEVENIWFNGFFNTLF MRDEFQERKRAAIGELQKKRMNMILGQLSMQSDGNVGPISAAHSRSFEELCAQNGYRL NAQFADRVVKRNADNRNQLVDHSIQIGECKLIVLSPNESSLNRLAHKLNIEMIRNFGI HYELSEDMEFAALFERLMELQIEPGCLEEYISASEPRLERWVGTSTLAPMNEVNNASV VIEIEYKGTKLLFSGDSDSDSWAEFLTDEYDLIKISHHGTTKPNIKLLEKAKGRTLLI STDGGKQNRHPENDLLARAILAGNKTICFNYDIKQKQELMDMQEKYGYSAMFGYREIR L" gene complement(3542760..3544613) /locus_tag="Dhaf_3309" /db_xref="GeneID:7260325" CDS complement(3542760..3544613) /locus_tag="Dhaf_3309" /inference="protein motif:PFAM:PF00004" /note="PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: lsp:Bsph_3245 stage V sporulation protein K" /codon_start=1 /transl_table=11 /product="AAA ATPase central domain protein" /protein_id="YP_002459763.1" /db_xref="GI:219669328" /db_xref="InterPro:IPR000470" /db_xref="InterPro:IPR000641" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:7260325" /translation="MWNSLKKILFSESILNDSVFECRLCQTTFNIKERPSEEYQLCRA CFKKANDHVESMIESFEMLKEKANKAGQAGNSYVQMHYLKEILARLTEYKESYYNKGV NFIAEDINQLIEAARKVRAEAAKEARESRRRRVKMDVSEMEAQTGEQWKELRAAQTSA LKSILNLYDTIDSKGYGLKDGRSLANEVLQTAVHFLAYIAIADGDLTELESQVIKDYL SVGRAYAIDTEASKKYIIENPQFAEEIPSFMDITKKFDEALIEAGERSEGTYDTMTGI VTLFGYLGRHFLYESCNDIDINKSTALYEYLLHLNEYLEDNGCETEYLGEFQEIDSEG VAVTGSSERTGSDKSLEQLLQELNELIGLARVKKDLNSLVNLIKVQKIREERGFSQPA MSLHLVFSGNPGTGKTTVARLLAEIYKALGLVSKGQLIETDRSGLVAGYVGQTALKTQ EVISKAKGGILFIDEAYSLTENRGEADFGTEAIDTLVKAMEDNRADLVIIVAGYPEPM ERFLDSNPGLRSRFNKFISFDDYSAEELLLILKSMCKKTNLSLSSQAEAYAYSFFQKR CDSDTFANARDVRNFFEKALVNQADRLAHIEDLSDEMLFAIEYDDIKDMTC" gene complement(3544746..3546572) /locus_tag="Dhaf_3310" /db_xref="GeneID:7260326" CDS complement(3544746..3546572) /locus_tag="Dhaf_3310" /inference="protein motif:PFAM:PF00111" /note="PFAM: ferredoxin; KEGG: tpd:Teth39_0998 vitamin B12 dependent methionine synthase, activation region" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_002459764.1" /db_xref="GI:219669329" /db_xref="InterPro:IPR001041" /db_xref="GeneID:7260326" /translation="MVQVTFLPGKRAIEVSEGSTVMEAAIAAGVPLESTCGGRGTCGK CKVQVDPTLVDPALDMGKFLSDSERKAGWVLACRYKVAEDLIVNLSESKDAHQRKTNL SQLEDIDLVPSVKKYELKLAKPTVHDQTPDWDRLMAALPSPKIHFNRTLAAGLPQILH QSNFHVTAVVDGNALLAVEPGDTTQKSHGLAIDIGTTTTVVYLVDLLQGKILDSDALT NPQRVFGADVISRITHAAKGPEQLQQLQTVVVEGLNTIISRLCKRNDLKQEDIYQAVV VGNTTMSHLFLGIDPTYLAPAPFIPVFRQSVQVKAAELGLNILKTGHVVVVPNVAGYV GADTVGVMIAAKVDQLPGYTLAVDIGTNGEIILAGGKRILTCSTAAGPAFEGAEIKYG MRAADGAIERVKITDDVELAVIGNAKPIGICGSGLIDAIAQMAEAGVIHESGRIVNTP EDLAKLPARIQERIRKAEGGFEFVLAWGKDTGLKEDVVLTQKDIRELQLAKGAILAGI KILMKEMGIGLEQLDRVLLAGAFGNYISKEAALRIGLLPDVPLEKIRAIGNAAGDGAK MILLSKEERKRAALLAELAEHLELSTRSDFQEEFIEALSFEK" gene complement(3546696..3548783) /locus_tag="Dhaf_3311" /db_xref="GeneID:7260327" CDS complement(3546696..3548783) /locus_tag="Dhaf_3311" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_0667 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_002459765.1" /db_xref="GI:219669330" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004010" /db_xref="InterPro:IPR004089" /db_xref="GeneID:7260327" /translation="MAVTVRSKGDLLSKNKEVPVERLRRMNFGLRKKLVVSFIILISI PVVVLGFMSYTMAANALQETIEQQLSDTTKQTAEAISGDMKAARNILNVMATNENLAE VILDQNNGELSSRVFTYLSTLQKENSDLFESLILTDAQGRGVMDNSSINTTADYAQRE YVQEALLGSVSLSDVIISMVTGNTVVAVGQPIKADNQVVGVLIGTINFNQIVKHATKI KIGESGYAYMVDREGLLVSHPVQEKILTENLSDTASGELKQLVERMKAGEAGEGFYSY EGVYKYTCFEPVESWVVAVTANYDEYMAAALSIRKQTIILIFSALTIALLIAVLIANN IVKPIKQLQSLMEKAGQGDLTVQSEINTKDEIKTLGESFNQMINSQSTIVKHVRRGAQ DLAASSEELAASSEQVSTSSQEISASIQHVAREAEEQSHAVLDASQTLVELSSMVQLA QNRALKINQSSENTKQAAQEGRIKVNNTVEAIEMINIKSQDTMTVLQELNQLSTKVGE IITTINAIATQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAEQSNLGSTEISTLV TEMIKQTEKAVQSMQQEKEAVEKGVEVVRETDHTFAQIIKVVEETVGNIKEIVELTKE EVATSDQVISLIDKVATITENTTANSQQVAAAAEEQTASTETVAASAEEISALAVSLD DLVRQFRTKEAGK" sig_peptide complement(3546696..3546869) /locus_tag="Dhaf_3311" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.835) with cleavage site probability 0.678 at residue 58" gene 3549022..3549132 /locus_tag="Dhaf_3312" /db_xref="GeneID:7260328" CDS 3549022..3549132 /locus_tag="Dhaf_3312" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459766.1" /db_xref="GI:219669331" /db_xref="GeneID:7260328" /translation="MQAVFRHGFLMEFLYINRAKFATFAFKGITIPFFSN" gene 3549331..3551241 /locus_tag="Dhaf_3313" /db_xref="GeneID:7260329" CDS 3549331..3551241 /locus_tag="Dhaf_3313" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_0217 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459767.1" /db_xref="GI:219669332" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260329" /translation="MIACSVNKVTKMYGGNTIFSNISLEIQENERVGLVGPNGSGKTT LFKLLAGQEDPDAGQVHWKKGSKTGYLTQIPDFEDGLTASDVLMIAYRELLEMEETMR ELETAMSMEEEHPRLDKLMEHYGLLLNQFTLQGGYEIQANLEKIAQGLNIGDLLPRSF ATLSGGEKTKVGLALTLLKNPDFLLLDEPTNHLDLFAVKWLGSFLKTYNGTVLVISHD RFFLDEVVTKILDLADGELYHYHTNYTGYVKEKEERLLKEFHDYEEQQKQIKKMKETI KRLREWANRAYPSGEGLYRQAKNIERALEHMEKLSRPQLNRKKMNLEMEASERSGKDV VLLQDVAKAFSGNQPLFTNVNLHLAFGQRAAIVGENGTGKSTLIKLILGELSPDQGEV RIGSNVKIGYLSQQVFSDTKEKTVIDLFREDIPMTEGEARNTLARFLFYGPMVYKKVS QLSGGERMRLRLAQLMYQDNNLLILDEPTNHLDMDSLQVLEDALENYDGTLLAVSHDR YFLNKLFHKVYWLEAGAVHCFEGNFSYAEEKMGTAHHQNERVHNEEVQLKREKPTVKQ GGSDSLPTRDKITPDYRLEKLESELKNLEEQISSLDLQLREIVDLAQLQQVYAEKEGL EKRWLEIFELLE" gene complement(3551316..3552803) /locus_tag="Dhaf_3314" /db_xref="GeneID:7260330" CDS complement(3551316..3552803) /locus_tag="Dhaf_3314" /inference="protein motif:PFAM:PF01145" /note="PFAM: band 7 protein; KEGG: bpu:BPUM_2731 flotillin" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="YP_002459768.1" /db_xref="GI:219669333" /db_xref="InterPro:IPR001107" /db_xref="GeneID:7260330" /translation="MLDFLAIPMIVLAVIIVLGLAFWARYKTVGPDQAMIVTGSYLGT KNVYTDESGRKIKIVRGGGAFILPVFQQAKFISLLSHKLDVTTPEVYTEQGVPVMADG VAIIKIGGSVEDVATAAEQFLSKPAQALSQEAQEVLEGHLRAILGMMTVEEVYRNRDK FAQEVQGSAAKDLRKMGLQIVSFTIKDIRDKNGYLEALGKPRIAIVKRDAEVAEAEAV RDARIQKAKAAEEGQKAELLRDTSIAEATKEKELKVASFKKEQDTAMAEADQAYHIQE ARSQQQVTEEQMKVTLVQKEKEIEIQEKEILRREKQYDAEVKKKADADRYAVEQAAEA DKAKRMREADALKYKIEAEAKANAEQKRLDGLAIAEAERAKGTAEAEVVRLKGLAEAE AKEKLAEAFEKYGQAAVLDIIVKMLPELAGKIAEPLKAIDKLTVVDTGTGQGAAKLSN YVTTLMATAPEMLNSVSGIDLDKLVKQLTGEIVDAAEPEDKNRQG" repeat_region 3552815..3554785 /note="ISDha10" gene 3553147..3554448 /locus_tag="Dhaf_3315" /db_xref="GeneID:7260331" CDS 3553147..3554448 /locus_tag="Dhaf_3315" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cbe:Cbei_2804 transposase IS116/IS110/IS902 family protein" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002459769.1" /db_xref="GI:219669334" /db_xref="InterPro:IPR002525" /db_xref="InterPro:IPR003346" /db_xref="InterPro:IPR006172" /db_xref="GeneID:7260331" /translation="MSQFLHDFVVGIDVSSEFSVVAMLAPSGELIRKPFRIDHNPAGF HKLLDILKKEEERLQRKPIYFVESTGIFHLPLFFFLRSNNLKGFVLNPLSVHSTKNFD LRKVKNDSKDAEAIARLAKYQDVKVSLVPEPQILALRMMTREYYALSDTLTEMKNRLS TDLYLLFPGFLDVFSGAFGKTALAILKDFPSPRAILAADTDSLTSLISKTSRKGTAWA TKKVNQLKDCAQLASSMPHEFSWLDAKIKVHIDGIESMQASLDGVVTQIQAMIDSELF PADAKRHIELLDGIPGIGFLTAATLIAEIGDFRLFNSAKALTAFFGLDPSVNQSGKFQ GDRNKISKRGTRIGRRILFTIAMASIRTTRKGDEINPVLREFYAAKCVNKKKKVALVA VMHKLLHYIFAVLRDQKPFEIRQPEDHQSWRNTKLRQAPAA" gene complement(3554774..3555307) /locus_tag="Dhaf_3316" /db_xref="GeneID:7260332" CDS complement(3554774..3555307) /locus_tag="Dhaf_3316" /inference="protein motif:PFAM:PF01957" /note="PFAM: protein of unknown function DUF107; KEGG: bpu:BPUM_2732 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF107" /protein_id="YP_002459770.1" /db_xref="GI:219669335" /db_xref="InterPro:IPR002810" /db_xref="GeneID:7260332" /translation="MLEVYWMCLSGGVLFALVSIIFGDVLGDIFDGVFDALSFDHVDF LHPMVLVGGVTIFGGSGVMLSRYTAMEPVPVALLSLMIAIALSILVYFAYVKPMKNSE NSTGFSMKDLVGKIGEVSVPIPVGGYGEVILRVGAGNTNQIAATLEQADIPAGTRVVV GETKDGVLYVFPYDKTS" gene complement(3555344..3556012) /locus_tag="Dhaf_3317" /db_xref="GeneID:7260333" CDS complement(3555344..3556012) /locus_tag="Dhaf_3317" /inference="protein motif:PFAM:PF04012" /note="PFAM: PspA/IM30 family protein; KEGG: hmo:HM1_1770 phage shock protein A" /codon_start=1 /transl_table=11 /product="phage shock protein A, PspA" /protein_id="YP_002459771.1" /db_xref="GI:219669336" /db_xref="InterPro:IPR007157" /db_xref="GeneID:7260333" /translation="MSLFKRVSDNIRANLNSLLDKAEDPEKMLDQYLRDMEEDIAEAE VAVAKQLAVAWKFKAQLDDAVALVEKREAQAMEALGNNREDLARRALEDKKINKAKSE EFRRQHESSSAMAEQLRSELKEMKNEYEKLRIKRDTLVARAQAAKAQQEIHGAVSGLG KDSTRRNFDRMEDKVLRMEAEAKVAGDLREKDLDQELESLGKDAEIEKELAALKERLM TKNE" gene complement(3556252..3557067) /locus_tag="Dhaf_3318" /db_xref="GeneID:7260334" CDS complement(3556252..3557067) /locus_tag="Dhaf_3318" /inference="similar to AA sequence:KEGG:Rxyl_0406" /note="KEGG: rxy:Rxyl_0406 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002459772.1" /db_xref="GI:219669337" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7260334" /translation="MKELIQVLGAEMKKSHRLNFHSSLIYFSLLVWPAITYVSAYYSF KPFDLGEYSPLNRFLSAENIGLFLLTGYLGYIFFWSLVQSAWQMSFERYAGTIELIFL SPVSRLGVIYGRAAADLLAGVWLFSTFAFLAAVLVGGVQIAGWWSVPLGLLVLAVSAV IWGGFLNVIFLFSRDSGFLYTILDEPMLIFSGVRIPVAALPCWGKLIALVFPLTYVLA ILRDLVIEGYGFTQILPSLGVLLAVLAVLFLFSSRLVILAEKHALKTGNLNLF" gene complement(3557064..3558062) /locus_tag="Dhaf_3319" /db_xref="GeneID:7260335" CDS complement(3557064..3558062) /locus_tag="Dhaf_3319" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smr:Smar_0065 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459773.1" /db_xref="GI:219669338" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260335" /translation="MLTAINLRKVFVTKEKKGPWRSRKKEVVAVNTLDLAIRPGEIVG LLGINGAGKTTTIKMLSTLLVPTAGSIMVDGTDAVKEPMKVKKRINMIAGGERMLYWR LTARENLAYFGSLYGLSGKALTERIHRLLQAVELEAAADTPVEQYSKGMKQRLQIARG LINNPSYLFLDEPTLGLDAPIAKHLREHIRNLAVKEGKGILLTSHYLTEVEALCERVY IIDQGELVLHDSPERIIQKVAAGEILSLWVSGLLPATQEHLRQMLVPLEASLTILEQS DGVELRIQSKGEITAQVLKFLFEHGVIPHRLEVEKPKLEDAILKLAGREEKGRKKA" gene complement(3558084..3558893) /locus_tag="Dhaf_3320" /db_xref="GeneID:7260336" CDS complement(3558084..3558893) /locus_tag="Dhaf_3320" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: rxy:Rxyl_0406 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_002459774.1" /db_xref="GI:219669339" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:7260336" /translation="MWQTFRATFRRNYLTMRRAYPWSFFIGNILSAVYTVLFAYLTYN YVFLGQMETRFADFAGTGDYISYVVLGGTVYSLAVSMLMIVSRALITELREGSLEALL LTPSSRKGYFLGTGLQGLMRVGIEFSVIILIGWFLGLNLTHINGLTAFIVLSITIGSF FAQALVLGSIMLYFRDTYITQNTLFIVMALVSGVTFPVQYLPGWLQPLSMMMPLNYGL QAFRSSVIEGSGLWASRNELTSLIVLSLIYFGIGIWAVQVTEKRVVEKIFD" gene complement(3558896..3559948) /locus_tag="Dhaf_3321" /db_xref="GeneID:7260337" CDS complement(3558896..3559948) /locus_tag="Dhaf_3321" /inference="protein motif:PFAM:PF01022" /note="PFAM: regulatory protein ArsR; KEGG: bcz:BCZK3521 ArsR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_002459775.1" /db_xref="GI:219669340" /db_xref="InterPro:IPR001845" /db_xref="GeneID:7260337" /translation="MLIEYSPFLEMVASLHVLQDPEHHLGRLNWARETEALLSPALKR QLVELGKISNDWLNLYDLHDLGNFQESSVEEGIERLLAVEERQFVYCLLGQVMPLDHV DQWLQGNEVDKEQWRKQRPLLLKPATWRRQFAEVLFTYYQEYFSKELRRIEPWLISSV HTFQERLRKEPLEAMESIHPRFVLREQEILFYKAQTWRFSYQDISGIMVRPSTFIAPH LLMGTNEAAVTVGYAVTVPGAERYDAVPRDLLGIMNAMSDESRMKILRQVFYHPYCTQ QLAEMYNLSEATVSKHLKVLSRAGLVYSQRKGNYVFYYGDRNRIQLIPVDLNQFFDQP LLDQPILDQLNERKGK" gene 3560174..3560395 /locus_tag="Dhaf_3322" /db_xref="GeneID:7260338" CDS 3560174..3560395 /locus_tag="Dhaf_3322" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: dth:DICTH_0366 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002459776.1" /db_xref="GI:219669341" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7260338" /translation="MTVISTPLVTEMILRYQTGMVNGSPVIRQKSISWLKTDTADEDI YEVAVALFELLDYPLISVTRNNRFELIEE" gene 3560430..3560672 /locus_tag="Dhaf_3323" /db_xref="GeneID:7260339" CDS 3560430..3560672 /locus_tag="Dhaf_3323" /inference="similar to AA sequence:KEGG:PTH_0422" /note="KEGG: pth:PTH_0422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459777.1" /db_xref="GI:219669342" /db_xref="GeneID:7260339" /translation="MAESTQQKILRLTFATTQGSTFTLTLPSPREDLTAVEAEAATNL ILAKNMFMTAGGELIGLKDIKVVDTTTADLYDPPQY" gene 3560842..3561663 /locus_tag="Dhaf_3324" /db_xref="GeneID:7260340" CDS 3560842..3561663 /locus_tag="Dhaf_3324" /inference="similar to AA sequence:KEGG:Bsph_3778" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459778.1" /db_xref="GI:219669343" /db_xref="GeneID:7260340" /translation="MDLELNSRTPQIIAAEINSIKEQTGKILLHSAIEIGRRLTEAKA MVNHGEWQKWLESSVSYSQSTANKLMRVFAEYGSKLAADHQAGANSEAMTSLSYTQAV ILLGVPETERESFIVENDVSAMSTRELQQAVKERDEALGKNAELQETVDSNTGTITQL TAERDELRKQASGLKAAGRTNEATIRTLQEQLETAKKGDASAGKIAALEKELQTARAK VSANKIIFHFDSLTKSFNELLKELTKLAPADPETHQKYKGEIGEFIGKMGNMLSS" gene complement(3561692..3561868) /locus_tag="Dhaf_3325" /db_xref="GeneID:7260341" CDS complement(3561692..3561868) /locus_tag="Dhaf_3325" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459779.1" /db_xref="GI:219669344" /db_xref="GeneID:7260341" /translation="MKWKSMNERQLDEAIKREIEKELSLIPVPDVDEEWKKFLLRLEE LESENKKDRDGSPG" gene 3562089..3562754 /locus_tag="Dhaf_3326" /db_xref="GeneID:7260342" CDS 3562089..3562754 /locus_tag="Dhaf_3326" /inference="similar to AA sequence:KEGG:PTH_1895" /note="KEGG: pth:PTH_1895 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459780.1" /db_xref="GI:219669345" /db_xref="GeneID:7260342" /translation="MKKISSIGLILVLTLTLSTACSTAAKSNTVNSPETLPESLPGLS RSLEDLPQDRPVLESIIYQRGWDKLWLCVGINNDASDKLRTLGSYGLISDIEQILWMV SRSEFTDTESEKKSAAELPVIKESELNLPHDETMLFYDHTGSKHSWIRLNYKPYIPGQ GMNTWTHKDLIIYIDPDCESNAFLGVQDPQNDNLWEIHALPGCGPWLAKEIDMLAYMT NAL" sig_peptide 3562089..3562166 /locus_tag="Dhaf_3326" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.480 at residue 26" gene complement(3562907..3563488) /locus_tag="Dhaf_3327" /db_xref="GeneID:7260343" CDS complement(3562907..3563488) /locus_tag="Dhaf_3327" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459781.1" /db_xref="GI:219669346" /db_xref="GeneID:7260343" /translation="MKISQKAIVILLVLLTIGLGTALAIQISEKNELASQLRKATAEV DQRVEEILDERKAAREKHQDAQDKLYQAVSLCGVYDSFFVNSAKNWGIELPLYEYDLK DQEIVEKAEAYIQSQINPEQELIYKMGPVTQKENGDYIVKFITYNKLGLDTHLNRDPA DLDKDLAKITRIMLIPLKGYSLKYSDGHFEYWG" sig_peptide complement(3562907..3562981) /locus_tag="Dhaf_3327" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.793 at residue 25" gene complement(3563597..3564028) /locus_tag="Dhaf_3328" /db_xref="GeneID:7260344" CDS complement(3563597..3564028) /locus_tag="Dhaf_3328" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459782.1" /db_xref="GI:219669347" /db_xref="GeneID:7260344" /translation="MKKVVCMFLIVFMTVFSVIPAYAMRGENLKEQSIIAPLYTYIYA IVPGLSIDSSGRSTSFGAASTYSSSHTITLNVELQKLSGNSWIRIKDWSVSGPGVPGV ETINDYYVTRGTYRVCVTVKVYDASGRLLETQSEYSATKTY" sig_peptide complement(3563597..3563668) /locus_tag="Dhaf_3328" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.973 at residue 24" gene complement(3564116..3564880) /locus_tag="Dhaf_3329" /db_xref="GeneID:7260345" CDS complement(3564116..3564880) /locus_tag="Dhaf_3329" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hmo:HM1_2918 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459783.1" /db_xref="GI:219669348" /db_xref="GeneID:7260345" /translation="MANKSSEQTRKKLYEDYEDSLFRLIMDEAAEKEGKGYLEEIERL KSEPEFLPSQEALEKFNRRLDTYFKKGNAALRRKRIIGISNRAAIAMLIVIALLFTTV ASVQALRVKVLNLFIDIQQDHTSFQIRDEDNRANREGPVVNWTKAYVPTYIPEGYEVS KVSNGTFVKTIVFSDQQDSTISYSELREGSELALDTENADKFEAIDINGHQGRVIVKN SVVTIVWEMDGCMFWIYSQIDEDIVIKIARSVKYVE" gene complement(3564870..3565436) /locus_tag="Dhaf_3330" /db_xref="GeneID:7260346" CDS complement(3564870..3565436) /locus_tag="Dhaf_3330" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: hmo:HM1_2919 RNA polymerase sigma-70, region 4" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459784.1" /db_xref="GI:219669349" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7260346" /translation="MLMLLTGIKDDGDRAFILSLYQDYYGLVRKKIMDITRDQESLED LINDTFIKLMEKISLIRTLECCKTAAYVVYTARSVAINFIKHRDVENKYLFYGAGEDL AEKIPDYEAVEESIIREERIEELGKAIAKLPEKEKDLLYFKYILEMDNEQLGQILGIA SASVRQYLTRSRRKAKKLIDKEVNQDGK" gene 3565694..3566332 /locus_tag="Dhaf_3331" /db_xref="GeneID:7260347" CDS 3565694..3566332 /locus_tag="Dhaf_3331" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459785.1" /db_xref="GI:219669350" /db_xref="GeneID:7260347" /translation="MKKAVYLFLLVLITASLLSGCNKKSTPSANDVPAPASVPGLEQA LKLPDEELLDSYCSGIDLCLGDDLLFAYAKDIPSETLFTFFCYMTSNQYVYERNYQDK KWYSKTDDKYHVPIADIEEVLNRYFDGHNFDPAQIDGYQPQAQEIVVGGLSGFGGGRF PKLVAKEQQNNDTLKLIVDYYDDQYKNVFYTKAYTIRFTAEGYQYLSIKKVV" sig_peptide 3565694..3565756 /locus_tag="Dhaf_3331" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.945) with cleavage site probability 0.444 at residue 21" gene complement(3566497..3568086) /locus_tag="Dhaf_3332" /db_xref="GeneID:7260348" CDS complement(3566497..3568086) /locus_tag="Dhaf_3332" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cno:NT01CX_1192 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459786.1" /db_xref="GI:219669351" /db_xref="GeneID:7260348" /translation="MSSLVFLLVKSAKNSFFELLRKPAKLIMWIVFLAMIVGLIVLSL FTTQEGDSFQDIIWLKGILFLLILLFVGIAVQKGLSNGDAIFDMNDVNLLFISPVNPR LILMYGIVKMAKTSFLAGFFILFQSNSLKLGFGVGFDAVLIVLLGFMLANSLLQVISL LIYTLTNSRPRRKMAVKIIAVAIFLPLIAKLGIQLAGAGNPMTALENTMRSPVFSWTP VAGWTSEGVVALIAGDLAKGLLFLGITVLTGALLILYIALSNPDYYEDVLVATETTFE KKRSLSEGQINPEAASTKKIKVAGTGISGLGSNTIFYKHLRESFRANRFGLWGLPSVI TIVSVAILSSFLPSDAGGLLIILQILMWMQIFMIGTGRGLKELYTHYIYLIPESSFRK IVWSNLEIAFKVLVESVVLFSVSGLIMGETIVLIVLTIAVYTLFSFLLLGINYLSMRW TGADISAGMMIMLYMFAVMIIMAPGLAAAIALGTTIEGIGVLIGMGVLAGWELLAGLL CFALSRGILHNSDMPVLRTGK" gene complement(3568083..3568793) /locus_tag="Dhaf_3333" /db_xref="GeneID:7260349" CDS complement(3568083..3568793) /locus_tag="Dhaf_3333" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1191 ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459787.1" /db_xref="GI:219669352" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260349" /translation="MIDVHNMTKTYGKLKANDNINLSVSAGELAVLLGPNGAGKSTLI KSVCGLLRYEGSITIGGHENHTVEAKRLLGYVPEFPVLYPMLTVGEHLEFIAKAYRLE SWEERAQELLRRFELDDKQLKLGKELSKGMQQKVSVCCALLPEPKTVIFDEPLVGLDP HGIRELKNLIARLRDSGCALIVSTHMIESMEDNWDVTYIMVKGKIERVVRRGDIAGQS LEDVYFAITEGQLQGGAQ" gene 3569206..3569562 /locus_tag="Dhaf_3334" /db_xref="GeneID:7260350" CDS 3569206..3569562 /locus_tag="Dhaf_3334" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ajs:Ajs_4242 filamentation induced by cAMP protein Fic" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459788.1" /db_xref="GI:219669353" /db_xref="GeneID:7260350" /translation="MSSKFSTYDPTDNRQSAYCYRGTDVLINKENIRDGKALAEYEAD ITLIRQYELESEQTVKGKFGITHLKNIYKYIFQDIYTDYDLQKEHQSKCSFVNSTMCS SIPSLIIRQFMVSFTH" gene 3569606..3571705 /locus_tag="Dhaf_3335" /db_xref="GeneID:7260351" CDS 3569606..3571705 /locus_tag="Dhaf_3335" /inference="protein motif:PFAM:PF03190" /note="PFAM: protein of unknown function DUF255; KEGG: chy:CHY_1723 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF255" /protein_id="YP_002459789.1" /db_xref="GI:219669354" /db_xref="InterPro:IPR004879" /db_xref="GeneID:7260351" /translation="MTNLNKVPNRLLQEKSPYLLQHAHNPVDWYPWGEEAFAKAKAED KPIFLSIGYSTCHWCHVMERESFEDEEVAQLINRYFVPIKVDREERPDVDHIYMEFCQ ALTGSGGWPLTLFLTPDERKPFYAGTYFPKESRYGRPGILDLLSQLGELWAKDQPKIR GSADSIYKAVTSREEPSVSSLTPALQDDFIPWAKEILDTAFQTLQKSFDRQYGGFGRA PKFPTPHHLTFLLRYAHDHSDGLEAQQAALMVRTTLERMGQGGIFDHVGFGFARYSTD RHWLVPHFEKMLYDNALLAIAYLENYQAQHDPHDEQKAREIFSYVLRDMTAPEGGFYS AEDADSEGVEGKFYVWTPQEIHEILGSEEGRLYCQAYGVSPEGNFEGKSIPNLLDTDW EALGSERQHSLEVLKRRLEKSREKLFAVRKERIPPHKDDKLLTSWNGLMIAALAKGAQ VLGEPAYAEAVEQAVYFIRKNLYANQRLLARYRDGDSAHLGYLDDYAFLIWGLIELYQ ASGKKEHLEFALQLQREQDELFWDGAKSGYFLTGRDAEELLIRPKEIYDGATPSGNSI SALNLIRLARLTGDGELEKRAYEQINAFKATLSTYPSGYSAFLQAIQFALQESREIIL AGPLQHPELKNMKTAIFKKFHPYTTLLYEEGTLSELIPWLKDYPLDSEKMTAYLCQNY ACHKPVHKAEELSALLT" gene complement(3571786..3572856) /locus_tag="Dhaf_3336" /db_xref="GeneID:7260352" CDS complement(3571786..3572856) /locus_tag="Dhaf_3336" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: hmo:HM1_0199 metal dependent phosphohydrolase domain-containing protein" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002459790.1" /db_xref="GI:219669355" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7260352" /translation="MRLVNIAYVGEGEVLARPLVSPNGKVLLQAGVKLTRNYIDKLSR LGFDTMFIEDDTFQDVEIYSAVSIKTREAAYASLENLSKNLNEAQPHTVNLGEVKKAV QNIIADLLYSKDMLGNVMEIQGYDDYTFHHSVNTTIIALIMGISMGWHNGKLLELGMG VLMHDVGKIKIPSEILNKRGPLTPEEFAEIKKHAEYGFEILRKNHDINLLSAHIALQH QERWDGSGYPRGLKGNQIHEYGRLAAVADVYEALTSKRVYRNALQPYEAYEYVIANSD TLFEPKVVQNTFSKCITPYPTGTGVRLTNGLRGNVVKQNFTFPTRPYVRMTHEGEIRL IAPIDYNLAEHPSLMIVGIENK" gene complement(3573199..3573285) /locus_tag="Dhaf_R0076" /note="tRNA-Leu6" /db_xref="GeneID:7260353" tRNA complement(3573199..3573285) /locus_tag="Dhaf_R0076" /product="tRNA-Leu" /db_xref="GeneID:7260353" gene 3573416..3573592 /locus_tag="Dhaf_3337" /db_xref="GeneID:7260354" CDS 3573416..3573592 /locus_tag="Dhaf_3337" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459791.1" /db_xref="GI:219669356" /db_xref="GeneID:7260354" /translation="MMNDELYVKLKQLLDFVEREAEKPLEDYNYEVRIWSKGYQKAMI TIKDYIWNIFNSSN" gene complement(3573666..3573818) /locus_tag="Dhaf_3338" /db_xref="GeneID:7260355" CDS complement(3573666..3573818) /locus_tag="Dhaf_3338" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459792.1" /db_xref="GI:219669357" /db_xref="GeneID:7260355" /translation="MWNHQLLRLIEDMRKELNQLGKRKPLTDPEVISLSQRLDELLNE YHLTAK" gene complement(3573889..3575097) /locus_tag="Dhaf_3339" /db_xref="GeneID:7260356" CDS complement(3573889..3575097) /locus_tag="Dhaf_3339" /inference="protein motif:PFAM:PF01969" /note="PFAM: protein of unknown function DUF111; KEGG: chy:CHY_1283 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459793.1" /db_xref="GI:219669358" /db_xref="InterPro:IPR002822" /db_xref="GeneID:7260356" /translation="MKAAYLDCFSGISGDMLLGALVDAGLDFNLLQRDLAGLDLDEYE LYEQKVLKQGIRGTQIHVHALEGHVHRHLSDIQAIIGRSALPPQVKEKSLEIFTRLGK AEAKIHGTDIEQIHFHEVGAVDAIVDIVGAVIGFWRLGIEKVFASPIHVGKGFVKAAH GLLPVPAPATLELLTGVPIYAQDVEGELATPTGAAIVTAYCREFGPFPKIRVERVGYG AGVKDLTIPNLLRLTVGELADEDKGQEGIREGEALTLEVNIDDMNPECYDYLFEKLFQ AGAMDVYIQTIQMKKNRPAVLLTVQTPYHKLEEMRKILFQETTTIGLRVYPIKKYMLP YELFTVETNYGSAKVKVAFMEGRACTVSPEYEDCRRLARLTGEPLKQIYEEIKEKAKI LLYSTKYPID" gene 3575211..3575639 /locus_tag="Dhaf_3340" /db_xref="GeneID:7260357" CDS 3575211..3575639 /locus_tag="Dhaf_3340" /inference="protein motif:PFAM:PF00571" /note="PFAM: CBS domain containing protein; KEGG: hmo:HM1_0167 CBS domain-containing protein" /codon_start=1 /transl_table=11 /product="CBS domain containing protein" /protein_id="YP_002459794.1" /db_xref="GI:219669359" /db_xref="InterPro:IPR000644" /db_xref="GeneID:7260357" /translation="MNVAFFLIPKQDVIYLKINSTMRQAIEKMEFHRYSAIPLIDDQG CYRGTITEGDLLWKLKNTPGLNFQNTHSIRLTEIEQHIQNYPVSISSRMEDLISRAVE QNFIPVVDDQKIFIGIVRRREILEYCTKALGMLESLPFKD" gene complement(3575738..3576475) /locus_tag="Dhaf_3341" /db_xref="GeneID:7260358" CDS complement(3575738..3576475) /locus_tag="Dhaf_3341" /inference="protein motif:PFAM:PF00106" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bld:BLi00319 hypothetical protein" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_002459795.1" /db_xref="GI:219669360" /db_xref="InterPro:IPR000788" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR002424" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7260358" /translation="MLQGKTALITGGATGIGRAIALKLAQEGVNIAVNYSRSREDAEQ TSQEIEKLKVACRIYQANVAKDQEVREMIGAVVRDFGQLDILVNSAGMTHFVEHADLE GMKDEYWDEIFSVNVKGLFNTCRAAAEALKKQKGCIVNITSIAGLTGLGSSIAYSASK AAAISVNKSLARVLAPDVRVNSVAPGVVLTRWVSGQEEHITRMAEGTPLQKVCTPEDV AEVAYALIAHAGFVTGQTWVVDGGNFI" gene 3576637..3577632 /locus_tag="Dhaf_3342" /db_xref="GeneID:7260359" CDS 3576637..3577632 /locus_tag="Dhaf_3342" /inference="protein motif:PFAM:PF00348" /note="PFAM: Polyprenyl synthetase; KEGG: sth:STH190 polyprenyl synthetase" /codon_start=1 /transl_table=11 /product="Polyprenyl synthetase" /protein_id="YP_002459796.1" /db_xref="GI:219669361" /db_xref="InterPro:IPR000092" /db_xref="GeneID:7260359" /translation="MASPDMASVTIKSANSAISFPELLVVEERLRESFLRAGDTIKDS CLLLLDSGGKRLRPLLTLQSAQCFGPLNSAALDAAVAAELIHMASLIHDDVIDHSDRR RGIPTINSQRGNQVAVLAGDYVFAEAFRILANKHLLTSMSYLVDAIQSMCDGEVQQAE QRCDLAVEPSQYFQRIAQKTGILLASCCCSGAASAGANQKAVEALGQYGMNLGYAYQI IDDILDFTGNPQVTGKPAAADLVNGYITLPVIYLLDKPLYGPWARDMLQARDLSPANV QRIIQALISSGALNEAFNTALHCAETAVQALSSLPPSPSKTFLSELTQTILYRQA" gene complement(3577639..3578703) /locus_tag="Dhaf_3343" /db_xref="GeneID:7260360" CDS complement(3577639..3578703) /locus_tag="Dhaf_3343" /inference="similar to AA sequence:KEGG:Moth_0157" /note="KEGG: mta:Moth_0157 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459797.1" /db_xref="GI:219669362" /db_xref="GeneID:7260360" /translation="MDIAKEVSKPQLIYSFVKTIFPAVKAQLGFWAEKAGRCPDRVLG EQALASIAHKEFHCLGGSIYSLYPGARVAEVIEFVVAYQTISDYLDNLVDALEIQDEQ AFRQLHLAMTEALDTDVQCSDYYAYYPHREDGGYLVELVQTCRRRVQKLPSYEVVRPY MMELAELYSLLQVTKHLHPAEREQKMLGWLEQVIPGYPGLSAWELAAATGSTLGTFCL FAMAYDSQLTDTEAKKVRDAYFPWITGLHILLDYFIDLEEDRKTNQLNFVEYYSSKKE QQERLLLFVETALSQARSLRYPDFHEAIIRGLLAMYLSDQKGKSRECGQVTAELIRAG GRPVKVLFWICLQLRKKGKL" gene 3578874..3579680 /locus_tag="Dhaf_3344" /db_xref="GeneID:7260361" CDS 3578874..3579680 /locus_tag="Dhaf_3344" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459798.1" /db_xref="GI:219669363" /db_xref="GeneID:7260361" /translation="MKLDKKFTVEYKVGIVSSLSASIIWVILISLWSLIAANIISLWH SEVVLFWQYLVAGISIGAMLVGSIQFYRNNSNKFKPRFPSLSMDYIYKEIETELHFKT RENIAYSSNYNIYALKEISEMKRSHNWTGDYISSPILESAHNHKVELCKDASPLTTAK IIFDVPLEKNQPTTFKLKYELGDSSKIMQPMIGHLVRNPTERIILRLCVPNDMVKGVK RCVYADSFAQINLSQPQIIHCKIIGNNDVYEWVIDNPSLLYYYRISWEFT" gene complement(3580018..3580206) /locus_tag="Dhaf_3345" /db_xref="GeneID:7260362" CDS complement(3580018..3580206) /locus_tag="Dhaf_3345" /inference="protein motif:TFAM:TIGR01411" /note="TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mta:Moth_1278 sec-independent protein translocase TatA" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, TatA/E family subunit" /protein_id="YP_002459799.1" /db_xref="GI:219669364" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR006312" /db_xref="GeneID:7260362" /translation="MLATFGMVTPTVMIIVLIIALVIFGPGKLPELGKALGRGISEFK SATNGEEEEKKEVESKEV" gene complement(3580389..3581165) /locus_tag="Dhaf_3346" /db_xref="GeneID:7260363" CDS complement(3580389..3581165) /locus_tag="Dhaf_3346" /inference="similar to AA sequence:KEGG:Daud_0940" /note="KEGG: dau:Daud_0940 protein of unknown function DUF114" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF114" /protein_id="YP_002459800.1" /db_xref="GI:219669365" /db_xref="GeneID:7260363" /translation="MDKDERLHYLDSLERLRGSKVLVYFAYTPLDDSILVPLYEQLKA IGHTEKIDLLLHSYGGAVDTPYKVVMLIREFCNEFGVIVPFVAKSAASMLVLGADEVV MGPISELGPIDPLIKHPIYKELWVPVQAIRYCIDYLQRSIESNPNPELVTGIITPMIN KLDPWLIGDYEKALKASHQYAEALLSRYMLKDNPELVPVVTRALTEGYFSHGYPIGRQ EAKELGLRVTEAEDELWDVIWSLYRGYEELFSTCDSGDRV" gene complement(3581367..3581651) /locus_tag="Dhaf_3347" /db_xref="GeneID:7260364" CDS complement(3581367..3581651) /locus_tag="Dhaf_3347" /inference="similar to AA sequence:KEGG:HM1_1973" /note="KEGG: hmo:HM1_1973 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459801.1" /db_xref="GI:219669366" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7260364" /translation="MEGKKIIRAVISIGLVVALISIIFVSQGHDPNNPHASIPREEWI SGEKGHGFSVKNNQNPQKQCYRCHVKQDLGGKSYCQSCHDASGVDYALPD" sig_peptide complement(3581367..3581453) /locus_tag="Dhaf_3347" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.976 at residue 29" gene complement(3581675..3582967) /locus_tag="Dhaf_3348" /db_xref="GeneID:7260365" CDS complement(3581675..3582967) /locus_tag="Dhaf_3348" /inference="protein motif:TFAM:TIGR00713" /note="Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde aminotransferase" /protein_id="YP_002459802.1" /db_xref="GI:219669367" /db_xref="InterPro:IPR004639" /db_xref="InterPro:IPR005814" /db_xref="GeneID:7260365" /translation="MGFQDQRSKEAFARANGVLPGGVNSPVRAFKSVGREPIFIAKGQ GARLWDIDGNSYLDYVLSWGPLILGHAHPVVVGAIKAAAERGTSYGAPTEIETECAEE VIKAFPSMEMVRMVSSGTEATMSALRLARGVTGRNKIIKFEGCYHGHGDSLLIKAGSG ALTFGVPTSPGVPSSVASQTIVAQYNDLEGLKEIFKECGEDIAAVILEPVTGNMGVVL PQPGFLAGLRTLTQDYGSLLIFDEVMTGFRVSYGGAQGRYQIDPDLTCLGKVIGGGLP VAAYGGKRKYMEQVAPSGPIYQAGTLSGNPLAMAAGLATLKLLQQEGVYEGLEKKTAR LAEGLQSIAQELGFPIWVNSVGAMFSAFFTDQPVIDFKSACSSDVERFGSFFRGMLER GIYLAPSQYEAVFLSAAHTDADIDYTLEQARDVLKSLG" gene complement(3582980..3583993) /locus_tag="Dhaf_3349" /db_xref="GeneID:7260366" CDS complement(3582980..3583993) /locus_tag="Dhaf_3349" /inference="similar to AA sequence:KEGG:SUN_0294" /note="KEGG: sun:SUN_0294 AsnC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, AsnC family" /protein_id="YP_002459803.1" /db_xref="GI:219669368" /db_xref="GeneID:7260366" /translation="MDALDRALLNIVQTDFPITSRPYETLAGLTGTTEEEAWQRIQRF RQEGVIRRLGGVFDSHRLGYKSTLCAARVPEDKIQILADLLMELPGVTHNYLRSHDYN IWFTLIASSQKEVEKILTTIKGLIGTDEVYSLPALRLFKISVDFDFNTEEQAGEQRHS EECECTANPRGSQKLEPYPVDDMDKLLIRELQGNIPESLTPYAEIAAKLMWQEEKVLR QTRALVDNQVIRRFGAVLRHQKAGFTANAMGVWQVPEAEAEAIGKVMASFREVSHCYQ RPTLKDWPYNLFTMIHGRSEEECGEVMARIAQATGIKDYAMLFSIKELKKSSMQYYRE EDD" gene complement(3583993..3584991) /locus_tag="Dhaf_3350" /db_xref="GeneID:7260367" CDS complement(3583993..3584991) /locus_tag="Dhaf_3350" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: drm:Dred_2159 radical SAM domain-containing protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459804.1" /db_xref="GI:219669369" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260367" /translation="MIVSWNTTNACNMYCDHCYRDAGCQAEEELNTAEAKTLLEQIAR AGFKIMIFSGGEPLLRPDIVELVAYATSLGLRPVFGTNGTLITVEMARRLKEAGAMGM GISLDSLHIDKHNQFRKYPRAWEEAVQGMRNCREVGLPFQIHTTVMDWNRDELEAITD FAVAEGAVAHHFFFLVPTGRAVSIEEESLRAEEYEDALTRIMKKQQEVDIELKPTCAP QFMRIAKEMGVKTRFGRGCLAGTSYCIISPKGQVQPCAYLNIPLGDVRETPFDELWKT HPVLNELRTLDYKGGCGSCGYKTICGGCRARAAYYEEGDFMAEEPWCLYHGRKGGK" gene complement(3584988..3585968) /locus_tag="Dhaf_3351" /db_xref="GeneID:7260368" CDS complement(3584988..3585968) /locus_tag="Dhaf_3351" /EC_number="4.2.1.24" /inference="protein motif:PRIAM:4.2.1.24" /note="catalyzes the formation of porphobilinogen from 5-aminolevulinate" /codon_start=1 /transl_table=11 /product="delta-aminolevulinic acid dehydratase" /protein_id="YP_002459805.1" /db_xref="GI:219669370" /db_xref="InterPro:IPR001731" /db_xref="GeneID:7260368" /translation="MPMIRRPRRLRSSAAIRRMVREHHVRIEDLIYPMFVTFGEKKKI PVSSMPGVYNYSLDEYIVALKDVVEAGIPAVLLFGLPESKDAAGTGAYDQHGIIQEAV RLTKKHYPDLYVITDVCLCEYTDHGHCGVIQDGRVLNDPTLKLLAQTAVSHAEAGADM VAPSDMMDGRVGAIREALDEAGYTDIPIMSYAAKFASAFYGPFREAAGSAPQFGDRRT YQMDPPNGNEAMIETALDVEEGADMLIVKPALAYGDITYRTKEQFGLPIVAYNVSGEY AMVKAAAEKGWIDEKRVVMESLVSMKRAGADLIITYHALDAARWIKEEQS" gene complement(3585992..3587167) /locus_tag="Dhaf_3352" /db_xref="GeneID:7260369" CDS complement(3585992..3587167) /locus_tag="Dhaf_3352" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: drm:Dred_2161 radical SAM domain-containing protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002459806.1" /db_xref="GI:219669371" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260369" /translation="MISLTKLLFNTEYFGDSLRYSKGSKGSMHGTTSGSGPVVVWNST RTCNLQCAHCYMESDAQKYQGELTTEEAKRFIDDLADFKVPVLLFSGGEPLIRPDFFE LAEYAAAKGIRPTLSTNGTLITREVAQRIKNIGVGYVGISLDGLREVNDKFRGKQGAF QAAMAGIQNCVAVGQRVGLRFTINSHNYAELDKIFDFIEEENIDRVCFYHLVYSGRGN QMIAEDVTPEQSRQAMETIIRRTIDFEERGLRKEILTVDNHCDGVYLYLRTLKDDPEK AQKIKELISMNGGNRSGIAFGEVDPLGYVHPDQFTQHITFGNVRERKFGEIWTDLNHP ILAGLKDRKPLLKGRCARCQYLNNCNGNFRTRAEAVTGDFWESDPACYLTDEEIGIV" gene complement(3587164..3588678) /locus_tag="Dhaf_3353" /db_xref="GeneID:7260370" CDS complement(3587164..3588678) /locus_tag="Dhaf_3353" /inference="protein motif:TFAM:TIGR01469" /note="TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: hmo:HM1_1966 uroporphyrinogen III synthase/methyltransferase" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C-methyltransferase" /protein_id="YP_002459807.1" /db_xref="GI:219669372" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR003043" /db_xref="InterPro:IPR003754" /db_xref="InterPro:IPR006366" /db_xref="GeneID:7260370" /translation="MDKGYVYLVGAGPGDPKLITVKGAECIAKADVLIYDRLASRRLL TLARPDCELIYVGKSPDRHTLRQEEINALLVQKGLEGKIVTRLKGGDPFVFGRGGEEA EDLLQAGIPFDIVPGVTSAISVPAYAGIPVTHRDLTSSFAVITGHEDPTKNSSALAWE HLATAHGTLIFLMGMENLSLIATKLMENGRSPSTPVGIIQWGTRPEQRVLVGELQNIA QLVKEEGFTNPSIIIVGEVVQLREKLQWFEKRPLFGQRIIVTRARHQASALSQGIEDL GGEPWEFPAIEIVPPRDPQPLIQAIKNLKRFEWLIFTSVNGVEEFFKVLMEQGRDVRD LAGMDVVAIGPATRDALEKRCLKVSFVPEEYRAEKIIEGLASRVLPGQSVLLARAEEA RDILPESLKALGADVWDVPTYRTVLGNANKEELMKLLEEKAVAAVTFTSSSTVRNFLQ LIDGRQSLLDGVKLYSIGPITSKTAQEFGLSIYREAKQYTIKGLLETLARGNEE" gene complement(3588725..3589651) /gene="hemC" /locus_tag="Dhaf_3354" /db_xref="GeneID:7260371" CDS complement(3588725..3589651) /gene="hemC" /locus_tag="Dhaf_3354" /EC_number="2.5.1.61" /inference="protein motif:TFAM:TIGR00212" /note="transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis" /codon_start=1 /transl_table=11 /product="porphobilinogen deaminase" /protein_id="YP_002459808.1" /db_xref="GI:219669373" /db_xref="InterPro:IPR000860" /db_xref="GeneID:7260371" /translation="MGSVKIGTRDSQLALWQAEWVKRKLEEYYPEREFVLVPMKTKGD KILDVPLAKIGDKGLFTKELEVGLLNGEIDCAVHSLKDLPTVLPPGLEIAAFCEREEP RDVFLSKDGTPLGSLPAGSIIGTSSLRRKAQLQNYRSDLSFADLRGNLQTRWRKLQES DMAGIVLAAAGVKRLGWEDRITEYISEEIMLSAVGQGAIAVEIAAQRADVREMLDLLN HGDTERAVKAERALLYRLEGGCQIPIGAWAVTEQQQIVLKGMVASLDGQRILKVTLSG EHPEELGRQAADLLIAQGALEILQEIRTPLEK" gene complement(3589662..3590993) /gene="hemA" /locus_tag="Dhaf_3355" /db_xref="GeneID:7260372" CDS complement(3589662..3590993) /gene="hemA" /locus_tag="Dhaf_3355" /EC_number="1.2.1.70" /inference="protein motif:TFAM:TIGR01035" /note="catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="YP_002459809.1" /db_xref="GI:219669374" /db_xref="InterPro:IPR000343" /db_xref="InterPro:IPR006151" /db_xref="InterPro:IPR015895" /db_xref="InterPro:IPR015896" /db_xref="GeneID:7260372" /translation="MFPITIGLNHKTAPVEIREKVSFHPSEINKALMELNELSALNGI VLLSTCNRLEIYAATPEVELGVSVIKKFLARHGKLREEDINQYLYVHTLYDSVRHLFR VVAGLDSMVMGETQILGQVAEAYEKSSQLNLSNKIIHAIFQNALAVGKRVRSETQIDQ HPTSVSYTAVELAKQTFGDVQGKSILILGAGEMSALTAKHLVASGADTVLVSNRSMQR AQALAEEFSGRAIPYEELDTALAEADIVISATAAAHFVIKPERMRRVMEQRRQRALLL IDIAVPRDIHPNVGELEGVTLFDIDDLRGVVDSHQKAREEAALQAGRILEEEMGRFVK WHNSLYVVPTIVALQRRGEEVREIMLKSALNKLGPIDEKQEKIIRSMANSIVTHLLHA PIANLKEAANTSQGHLYTEILQNLFDLDGNELSPHAGWSVHHAASHHSNQG" gene complement(3590969..3591607) /locus_tag="Dhaf_3356" /db_xref="GeneID:7260373" CDS complement(3590969..3591607) /locus_tag="Dhaf_3356" /inference="protein motif:TFAM:TIGR01470" /note="TIGRFAM: siroheme synthase; KEGG: pth:PTH_0970 siroheme synthase" /codon_start=1 /transl_table=11 /product="siroheme synthase" /protein_id="YP_002459810.1" /db_xref="GI:219669375" /db_xref="InterPro:IPR006367" /db_xref="GeneID:7260373" /translation="MSHYYPIYVELQNKPVLVVGGGTVALRKVKTLLEHGAVVRIVSP ELHPELVELVDDERCLWKKKEYSADDLQDEVLVFSCTEIEEVNSAAAGDAQKSMRLIN VVDDPEKCTFIVPSILERGDLSIAVSTGGSSPIVARQIRAELAEHYGEAYEDYLTLLG SWRKDVKARLTAEQKEKFWNRATDGEMLELIKNGRLDDAKGVMQKCFQSLLG" gene complement(3591742..3592596) /locus_tag="Dhaf_3357" /db_xref="GeneID:7260374" CDS complement(3591742..3592596) /locus_tag="Dhaf_3357" /inference="protein motif:TFAM:TIGR03144" /note="TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: hmo:HM1_1962 cytochrome c assembly protein, CcsA" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcsB" /protein_id="YP_002459811.1" /db_xref="GI:219669376" /db_xref="InterPro:IPR002541" /db_xref="InterPro:IPR003557" /db_xref="InterPro:IPR017562" /db_xref="GeneID:7260374" /translation="MGGSMENFEVILFYIMVGAYIGSTVFYWIGMAAKKDVVTHLGTF AAIIGLIANTAAIALRWVITQRPPLTNGYEFILTFCWGIVIIYIFAEFRYKIKALGSF VMPVTFILLMFIIMKMGPSERVAGAIPPALKSQWLTFHVFTAMLAYGAFAISCGLGIM YLLKTGAGSHEKHEKETWLNRFPPENVLDELAYKMIGFAFPMLTLCIVTGAIWANYAW GTYWSWDPKETWSLITWIIYAAYLHARLMYGWKGKRAAWMAIIGFAAVLFTFFGVNYL LPGLHSYA" gene complement(3592621..3593925) /locus_tag="Dhaf_3358" /db_xref="GeneID:7260375" CDS complement(3592621..3593925) /locus_tag="Dhaf_3358" /inference="protein motif:PFAM:PF05140" /note="PFAM: ResB family protein; KEGG: hmo:HM1_1961 cytochrome c biogenesis protein ccsb, putative" /codon_start=1 /transl_table=11 /product="ResB family protein" /protein_id="YP_002459812.1" /db_xref="GI:219669377" /db_xref="InterPro:IPR000418" /db_xref="InterPro:IPR007816" /db_xref="GeneID:7260375" /translation="MSNRSDGLIEKIWDIFSSMKTGLVLLGIVALVSGIGTLVPQESL DPEGAHAVAEIWRTLGFTHIYSSPLFQFLLGLLCINLIVCSVQRFGGIYKLTFNPEAP RDKSSLPQKISAKLSGQTEDVLKQRTQEVLKKKGFRLTEAAGEGQWSFTAQKRRMGSW GSFITHLAFVILILGALIGSLSGFKGYMMAGEGSVVPIQEIDLYKGQVKENFMVKINS VEDRILPSGERDNWYTDLSIIESGTEVHRQSISVNHPLTYKGVTFYQSSYAPGAQFTV EMGDKTFPVALQNGYGYFNAPGTNLYFVLAAMKTSPQESVILYQVFDEQRQLDMGQLT PGESKNIQDAYTITFDKAIAFTGLQIKADPGVGIVWLGSGLLMVGLLLSFYWRPVRIA GVLEANHETQEATLTLGAYTGKLSMGVKEEFDRIVAEVEGIS" gene complement(3594227..3595168) /locus_tag="Dhaf_3359" /db_xref="GeneID:7260376" CDS complement(3594227..3595168) /locus_tag="Dhaf_3359" /inference="protein motif:PFAM:PF03916" /note="PFAM: Polysulphide reductase NrfD; KEGG: chy:CHY_2572 putative molybdopterin oxidoreductase, membrane subunit" /codon_start=1 /transl_table=11 /product="Polysulphide reductase NrfD" /protein_id="YP_002459813.1" /db_xref="GI:219669378" /db_xref="InterPro:IPR005614" /db_xref="GeneID:7260376" /translation="MHLHWQWLIVIYLFLGGLGAGAYLTSYAAGRGWLGNSPALQRAG YFIAAPIVAFGTVLLVFDLGQGLKKPWLLIGLLSNFSSVMTWGVYILALFICVGLVVA FFVWKKKAIPGALEHLGALLAFSTCAYTGLLVAVVEAIPFWNTYVMPVLFVVSAISTG LSITVLVGNIIDKGVHADEYKISKLHFCLVSVEIILVAFIFSVANAGGGVKAASAAQA ISGGLALWFWLFLVVLGLVVPLLISAFAVRKLGRSAHTGHALHAAAGSGNTVALEQGQ GLANVLLLSDALVVLGGFVLRYVVIFAALPIWNGTLM" sig_peptide complement(3594227..3594313) /locus_tag="Dhaf_3359" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.776) with cleavage site probability 0.691 at residue 29" gene complement(3595191..3595865) /locus_tag="Dhaf_3360" /db_xref="GeneID:7260377" CDS complement(3595191..3595865) /locus_tag="Dhaf_3360" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ecf:ECH74115_3746 dimethylsulfoxide reductase, chain B" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459814.1" /db_xref="GI:219669379" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260377" /translation="MSKLDVKLKRRTALKIGALTAAAVAVGVPMGSLKEASVKAAGTE SSESKQLGFMYDQTKCINCKLCAKACKETNKWEPGAEWRKVYVAEPASNKVYLSMSCN HCADPACMAVCPVKAYTKRDKDGIVAHNTKKCVGCAYCLYACPYHAPQFVKSGTGAVT KCSFCAEIQDQGGKPACVSACPTGALTYGDITELRKTPGAVAPEVNGLPPASITNPSL VIIPKV" sig_peptide complement(3595191..3595295) /locus_tag="Dhaf_3360" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.513 at residue 35" gene complement(3596194..3597162) /locus_tag="Dhaf_3361" /db_xref="GeneID:7260378" CDS complement(3596194..3597162) /locus_tag="Dhaf_3361" /inference="protein motif:PFAM:PF00348" /note="PFAM: Polyprenyl synthetase; KEGG: hmo:HM1_1960 heptaprenyl diphosphate synthase component II, putative" /codon_start=1 /transl_table=11 /product="Polyprenyl synthetase" /protein_id="YP_002459815.1" /db_xref="GI:219669380" /db_xref="InterPro:IPR000092" /db_xref="GeneID:7260378" /translation="MKQLWLFNQINSDLQRVEKELHAYIKTDFPILDQSAVQLLEAGG KRLRPAFTLLAGKFYGYPIDRLLPVAMALELIHMATLVHDDVVDASMTRRGRPTVKAK WGNVVSIATGDYLLAKALELLAQINHPEVSKILAEVSVEMSQGEIQQIKASNDVNQNL KQYYYRIKRKTAMLISASCKLGALISAAPRREVWALGAYGHALGMAFQIVDDVLDVTA EASELGKPVGGDIRQGIMTLPLILALHQSGERERLHELLVKPEKDEDDVREAIKMIKD SGAIADSMHYVDLYISKANSYLQELPNVPTRKALVDLAYFVKERKF" gene complement(3597185..3597607) /locus_tag="Dhaf_3362" /db_xref="GeneID:7260379" CDS complement(3597185..3597607) /locus_tag="Dhaf_3362" /inference="protein motif:PFAM:PF02416" /note="PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bba:Bd3866 putative sec-independent protein translocase protein" /codon_start=1 /transl_table=11 /product="sec-independent translocation protein mttA/Hcf106" /protein_id="YP_002459816.1" /db_xref="GI:219669381" /db_xref="InterPro:IPR003369" /db_xref="GeneID:7260379" /translation="MSFNELIILMVIALVLFGPEDLPDVARAIGKVVFEVKKIAGDMT KEFQDAVNTPSNVLKKTLDDTLKTPAPKKSTQEVTKTAAAAPSTAAAVAPEAADTPEA ADTPKDENATPNKDDEELLTYDEDPLAELPQDMVSYEK" gene complement(3597619..3598371) /locus_tag="Dhaf_3363" /db_xref="GeneID:7260380" CDS complement(3597619..3598371) /locus_tag="Dhaf_3363" /inference="protein motif:TFAM:TIGR00945" /note="TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: mta:Moth_1279 sec-independent protein translocase TatC" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase, TatC subunit" /protein_id="YP_002459817.1" /db_xref="GI:219669382" /db_xref="InterPro:IPR002033" /db_xref="GeneID:7260380" /translation="MRRRKRVDENMPLMEHISALRKVFLFAAYGVILGTVVGWIYSDQ VYAFLANPVIQLGIELITTTPMEPIMVKLKVSIVVGVVIALPIIIWQIWSFILPALKQ NEKKYLYMIVPSSVILMLAGIAFAFLFVIPIGLKFLLFTGQAVVTSTTLVTKASYLSF IIRFLLSFGLIFQLPVILLLLIRIGVLSPDSLAKKRKYAFFGIVVVVMLISPTPEIMT QGLMVLPTYMLYEASIWLGYIVARKREKALEG" gene complement(3598497..3599252) /locus_tag="Dhaf_3364" /db_xref="GeneID:7260381" CDS complement(3598497..3599252) /locus_tag="Dhaf_3364" /inference="similar to AA sequence:KEGG:Dred_2199" /note="KEGG: drm:Dred_2199 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459818.1" /db_xref="GI:219669383" /db_xref="GeneID:7260381" /translation="MLLLSEHFKEELEEIKRTLRREIKLKAAEFDELVELNFGELENN ACPLIVLAVSQTFGGAARSAIGLATIFQYIFMADQVHRLMKDDPDLEESKRQFPVLVG DFLYGKFFLSLCKEKMLHFLAPLAKVIENMNQGAIIRWLSRDKKVSDGEYIRTIEMER ASLTGLAARLGAELAGCPLKVQEQCETIGWNLGIAWAASQERRSGGVVDFALTEARSI LRELPDHRNHSLNQLIDYIESNVQVKTLELNYR" gene complement(3599611..3599988) /locus_tag="Dhaf_3365" /db_xref="GeneID:7260382" CDS complement(3599611..3599988) /locus_tag="Dhaf_3365" /EC_number="4.1.1.50" /inference="protein motif:TFAM:TIGR03330" /note="Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase proenzyme" /protein_id="YP_002459819.1" /db_xref="GI:219669384" /db_xref="InterPro:IPR003826" /db_xref="InterPro:IPR017716" /db_xref="GeneID:7260382" /translation="MSNSLGRHVLAEIYGCSFEILNNREEVEAIMVNAALEAGAEVRE VVFHKFSPQGVSGVVVISESHLAIHTWPELGYAAVDVFTCGDQVNPWDACNYLTEQFK AGHMTATEMKRGLVEDPKEAVNL" gene complement(3600239..3601387) /locus_tag="Dhaf_3366" /db_xref="GeneID:7260383" CDS complement(3600239..3601387) /locus_tag="Dhaf_3366" /inference="protein motif:PFAM:PF01979" /note="PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cbf:CLI_0893 putative amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_002459820.1" /db_xref="GI:219669385" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7260383" /translation="MSLLIKNGLVWLHEQEDYFKADILIKHSKIKEVRPVIEGEKGIP VLDVREGYILPGWIDCHTHLGIIEEATGKIGVDNNEISDPITPNLRAIDGVNPMDIAF KDAVRHGITTVMSGPGSDNPVGGLNMAFKTAGRIIDQMVIKNPVGLKIALGENPLTTY GADKKSPVTRMGTASLIRELFMQAQDYMSLKKADKVKKRDVKLEAVIPLLRGEIPLRA HAHRADDIITAVRIAEEFKIEKLVIEHGTEADLIADYLFEKKVAVALGPMLTPRIKME LRNRNYASALKLMDSGLTVALITDHPYNSIEQLRTIAILAVAEGLSPKDALKCLTVNP AEILGCDDRIGRIAEGYDADLVVYDQEPLSINAKVLQTIIDGRIVYSA" gene 3601552..3602631 /locus_tag="Dhaf_3367" /db_xref="GeneID:7260384" CDS 3601552..3602631 /locus_tag="Dhaf_3367" /EC_number="1.12.99.6" /inference="protein motif:TFAM:TIGR00391" /note="KEGG: hmo:HM1_1478 uptake [Ni/Fe] hydrogenase small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit" /codon_start=1 /transl_table=11 /product="hydrogenase (NiFe) small subunit HydA" /protein_id="YP_002459821.1" /db_xref="GI:219669386" /db_xref="InterPro:IPR001821" /db_xref="InterPro:IPR006137" /db_xref="InterPro:IPR006311" /db_xref="GeneID:7260384" /translation="MGEDTYYSWARRRGISRRDFLKFCTLTAAMLGLDSSAVPKIVKA LETKPRVPVIYLNLQECTCCSESFLRSAHPLISDLILNMISLDYMEVIQAAAGIQAES ARLKAMQDYYGHYVLVVEGSATLGDGGVYCTIGGMTANDLLKECADGAAAVIAYGSCA TNACIQGAYPNPTEAVPIRRIVKNKPVIDVPGCPPIAEVITGTIVHYLTFGEIPELTS QGRPKAFYSKRVHDGCTRRAFFDAGQFVEQFDDEGAKKGWCLYKMGCKGPVAYNACAV MEWNGGISFPVKSGHPCMACSENNWYDTSTPFYTHLADIPNNAIGKNPDELGLAALGV AGVGVVAHAAATIATKTSEKRQKQE" gene 3602652..3604364 /locus_tag="Dhaf_3368" /db_xref="GeneID:7260385" CDS 3602652..3604364 /locus_tag="Dhaf_3368" /inference="protein motif:PFAM:PF00374" /note="PFAM: nickel-dependent hydrogenase large subunit; KEGG: hmo:HM1_0206 uptake [Ni/Fe] hydrogenase, large subunit" /codon_start=1 /transl_table=11 /product="nickel-dependent hydrogenase large subunit" /protein_id="YP_002459822.1" /db_xref="GI:219669387" /db_xref="InterPro:IPR001501" /db_xref="GeneID:7260385" /translation="MATRIVVDPLTRVEGHLRIEAVVEGTQITEALSSGTIFRGIEKI VENRDPRDVWSFVQRICGVCTHIHALTSIRAVEDALDYRIPKNANIIRNIMTLTQMVH DHVVHFYHLHGFDWVDVLSALKADPKATSELAMSLSDWPNSSAGYFRDVQNKVKGLVE SGQLGIFANAYWGHPAYRLPPEANLLAVAHYIEALNWQKEIVKIHTIFGGKNPHPNYC VGGHPSTINMNDVHVINMERLNLVKSKIDEAQTFVDKVLLPDLFAIAGFYKGDLWGGG IGNFLCYGGVPMTDIREPDSFLFPNGAVLNRDLSKVYDVDLKDPEHIKEFVSHSWYQY DDPQAGLHPWQGKTAPAYDGPRPPYHNLDENKKYSWIKTPHWQGHPMEVGPLARFVVG YARGNKPIKGLVDDALQRLDLPITALFSTLGRTLARALEAKLSVDHLAGFYADLLANI KAGDSQTFNPEKWEPSRWPAAAQGVGFAEAPRGALAHWVKIRDGKVESYQAVVPTTWN AAPRDEKGVKGPYEASLLDTPVAVPDQPLELLRTIHSFDPCLACATHLISPAGEELAK VKVL" gene 3604383..3605105 /locus_tag="Dhaf_3369" /db_xref="GeneID:7260386" CDS 3604383..3605105 /locus_tag="Dhaf_3369" /inference="protein motif:TFAM:TIGR02125" /note="TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: hmo:HM1_1480 Ni/Fe-hydrogenase, b-type cytochrome subunit, putative" /codon_start=1 /transl_table=11 /product="Ni/Fe-hydrogenase, b-type cytochrome subunit" /protein_id="YP_002459823.1" /db_xref="GI:219669388" /db_xref="InterPro:IPR000516" /db_xref="InterPro:IPR011577" /db_xref="GeneID:7260386" /translation="MAEAKNYQPDGSPSKLRSPIYVWQWPVRFFHWINAAAIVVLFIT GLYIGNPILSSPGEAVGNFFMGNMRYWHGITAYIFTANLLFRLYWFVVGNEFAKLRFW RKEFWQDAVATLKYYLFLTREHTTHVGHNSMAQLMYLVFIWVASLVMILTGFAMRATA TPSGALGLFSWLIPAIGSESQVRMIHHLFAWGYAAFLLGHLYMVFRQDILDDDGTVSS MISGYKYELPETVKPEDHPPSP" gene complement(3605189..3605608) /locus_tag="Dhaf_3370" /db_xref="GeneID:7260387" CDS complement(3605189..3605608) /locus_tag="Dhaf_3370" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459824.1" /db_xref="GI:219669389" /db_xref="GeneID:7260387" /translation="MALLSYNRSIITNEAEATFVPLTGIPTLILEFGLSVPEPANFVE LQTSVGWQVVNTIADFQPTLRLVVLQDGLEVGAAHQEALADGDDEPVEMLAAFQTVLT DVTVGHHVYQVLVYNLQPAQGDIAVTGPATISGKVIS" gene 3605960..3606661 /locus_tag="Dhaf_3371" /db_xref="GeneID:7260388" CDS 3605960..3606661 /locus_tag="Dhaf_3371" /inference="protein motif:PFAM:PF03741" /note="PFAM: Integral membrane protein TerC; KEGG: drm:Dred_0428 integral membrane protein TerC" /codon_start=1 /transl_table=11 /product="Integral membrane protein TerC" /protein_id="YP_002459825.1" /db_xref="GI:219669390" /db_xref="InterPro:IPR005496" /db_xref="GeneID:7260388" /translation="MKEMEFFSPEFFSAVLSIVLMDLVLGGDNAIVIGMAARNLPRDS QKKVILIGTGGAILIRSLATIVAVWLLKIPGLMFVGGVLLVWMAYNLLTDDKEGEHVA SAVNFWGAIRTIIIADFIMGLDNILAVAGASHGSPFLVIFGLCISIPIVVWGSTLVIK AINRFPIIIPLGAAVITHTAVTMLVGEPYVKHFIGESALLEWGLSAVFITIVLLLGHQ KNKKKALQTTQHHAA" gene complement(3606738..3606980) /locus_tag="Dhaf_3372" /db_xref="GeneID:7260389" CDS complement(3606738..3606980) /locus_tag="Dhaf_3372" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459826.1" /db_xref="GI:219669391" /db_xref="GeneID:7260389" /translation="MKRLDFNKFVEADFTYMRFVHVAKQESQMGMRERIDRELAVMID DLMAINLEYNNVGKQVLAIWQGYWMAISALDIDVED" gene complement(3607036..3607596) /locus_tag="Dhaf_3373" /db_xref="GeneID:7260390" CDS complement(3607036..3607596) /locus_tag="Dhaf_3373" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpf:CPF_1086 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459827.1" /db_xref="GI:219669392" /db_xref="GeneID:7260390" /translation="MSMSRSKKIMRNMLLMVVLGAMFILRSGLYLSPLSAHEHSERSI HYGPSKVVHMEDFDKGKYILGKYDRWVSCNTVKKELFFFWSFGNNPVGFENDPTKAID YTMDGSFNDGHYDFKLYGIANDPRIKKVEIILRDGRILTQTEFYGDLFLFTWQTDEDA PNGGLKEVRGYGEGDSILFRAENEVG" sig_peptide complement(3607036..3607146) /locus_tag="Dhaf_3373" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.465 at residue 37" gene complement(3607583..3608293) /locus_tag="Dhaf_3374" /db_xref="GeneID:7260391" CDS complement(3607583..3608293) /locus_tag="Dhaf_3374" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpy:Cphy_3561 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459828.1" /db_xref="GI:219669393" /db_xref="GeneID:7260391" /translation="MPSPELDNFLRTVLSYVKFSFDKKAIRSELESHLWDRIEDYLEQ GYEEEAAVHLAVEGMGEPKEIGIELNKQHNPLIGWLWWLTNKAVVLLVAINLLIYGIP ITDSLLADDPAKDIPPTDIVYDLKVDEKVYLDDTVIEFTRVILKKNGELSIIYKYYDT RFWGRGWSLGGIGRISDNLENEYWSGSGSSNGGIVTKGIRTFKDFDKTAEILIISYDH FNRSYRVEIPLKAGDVHE" gene complement(3608280..3608624) /locus_tag="Dhaf_3375" /db_xref="GeneID:7260392" CDS complement(3608280..3608624) /locus_tag="Dhaf_3375" /inference="protein motif:PFAM:PF03551" /note="PFAM: transcriptional regulator PadR family protein; KEGG: amt:Amet_1565 PadR-like family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, PadR-like family" /protein_id="YP_002459829.1" /db_xref="GI:219669394" /db_xref="InterPro:IPR005149" /db_xref="GeneID:7260392" /translation="MKIDKGLIGGSTNLLVLTLLQEQDRYGYEIIKELESRSDSTFLF KEGTLYPVLHKLENNGLVTSYMVKGETGKERKYYKITGKGQKQLAEEKQTWETFSVSV NKVIGGNVHAFS" gene complement(3608723..3609868) /locus_tag="Dhaf_3376" /db_xref="GeneID:7260393" CDS complement(3608723..3609868) /locus_tag="Dhaf_3376" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: hau:Haur_1199 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_002459830.1" /db_xref="GI:219669395" /db_xref="InterPro:IPR004843" /db_xref="GeneID:7260393" /translation="MNISGFILGVILILSVYGGVNYYIGRGLFQWLSLLFPYINARVY AGIYLFFALSLILGFLPLSASLKKIMSWIGAHWMGVFIYLFLFFMVADLVIVLGSILK VIPRPIPQNIRFYAGLLVILLTAGLVSYGLYNANQIKYVSYAVQTKDTTLAADMNIVL ISDLHLGAVNSERNLEHIVQGINQLEPDLVCLAGDIFNDDYHALRNPSAAIELFKSIK ATYGVYACLGNHDGGKTFNEMMGFLEQSNIKLLNDEYAIIDERLVLIGRLDSSPIGGF GELKRKDMTETIASLPTNIPVVVMDHTPSNLDQYGPEIDLVLAGHTHRGQIFPGSLFT NALFVVDYGHYQKDADSPHVIVTSGAGTWGMPMRIGTHSEIVSILLR" gene complement(3609949..3610025) /locus_tag="Dhaf_R0077" /note="tRNA-Pro3" /db_xref="GeneID:7260394" tRNA complement(3609949..3610025) /locus_tag="Dhaf_R0077" /product="tRNA-Pro" /db_xref="GeneID:7260394" gene complement(3610119..3610571) /locus_tag="Dhaf_3377" /db_xref="GeneID:7260395" CDS complement(3610119..3610571) /locus_tag="Dhaf_3377" /inference="protein motif:PFAM:PF01842" /note="PFAM: amino acid-binding ACT domain protein; KEGG: drm:Dred_1164 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459831.1" /db_xref="GI:219669396" /db_xref="InterPro:IPR002912" /db_xref="GeneID:7260395" /translation="MAGQNRNKDFLIVSKDILPEAILKTAQAKELLVKGDANTINEAV DRVQLSRSAFYKYKDGVFPFYEASREKIITFSLTLENTAGVLSNVLNTIARFKANVLT INQGIPLQGIANVTISVENMGMVDIPENLLSALGEIDGVRKIEVIGQN" gene complement(3610727..3612211) /locus_tag="Dhaf_3378" /db_xref="GeneID:7260396" CDS complement(3610727..3612211) /locus_tag="Dhaf_3378" /inference="protein motif:TFAM:TIGR02836" /note="TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A; KEGG: hmo:HM1_1991 stage IV sporulation protein A" /codon_start=1 /transl_table=11 /product="stage IV sporulation protein A" /protein_id="YP_002459832.1" /db_xref="GI:219669397" /db_xref="InterPro:IPR014201" /db_xref="GeneID:7260396" /translation="MEKVDIFKDIAERTGGDIYLGIVGPVRTGKSTFIKRFMDLQVLP NIMDVFERERANDELPQSGSGRQITTTEPKFIPSDAVEILIKDSIQMKVRLVDCVGYA VEGAIGYESEDGEEPRLVRTSWSDEPIPFQEAAEIGTRKVITDHSTIGIVITTDGSIT DIPREAYVDAEERVIEELKQLGKPYVVVMNTTRPYSEMTMELSSSLEEKYNVPVIPVN CLDMTPEDITQILEEVLYEFPVAEVNIEIPKWVEELESSHPVRASFEEAVRQSVEGIR RIRDIDMALDKLGECPNAQDVLLKQMNLGTGIAEIEMTAIDGLFKTVLEEMTGVNVEG EHTLMRLVLDYSKAKKEWDKLAPAIEEVRSNGYGVVTPHLDEMYLEEPELVKSGGHYG IKLKASAPSLHILRADVTTEITPLIGTEKQAEDLVRYILDEFESDPKKVWESNIFGKS LHDLVREGVQTKLYRMPENAQHKLQDTLQRIVNDGNGGLICIII" gene complement(3612632..3613690) /gene="gpsA" /locus_tag="Dhaf_3379" /db_xref="GeneID:7260397" CDS complement(3612632..3613690) /gene="gpsA" /locus_tag="Dhaf_3379" /EC_number="1.1.1.94" /inference="protein motif:PRIAM:1.1.1.94" /note="catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate" /codon_start=1 /transl_table=11 /product="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase" /protein_id="YP_002459833.1" /db_xref="GI:219669398" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR004455" /db_xref="InterPro:IPR006109" /db_xref="InterPro:IPR006168" /db_xref="InterPro:IPR011128" /db_xref="InterPro:IPR013332" /db_xref="GeneID:7260397" /translation="MAKIAVYGAGSWGTALAVSMGKAGHEVALVGRNLSEMDLMEQRR ENRPYLPGVVLPPTVRPTGDAGALEEAEMLVLSVPSHSVRETAQKIRAYLQPGTIVVN TAKGLEEGSHKRLSQVLTEELPHHPIVVLSGPSHAEEVGKDMPTTVVVASQNSQAAEA VQDMLMTPKFRVYTNPDTIGVELGGAFKNIIALCAGFADGLGFGDNTKAALMTRGIAE ITRLGAAMGGNPLTFAGLAGVGDLIVTCTSRHSRNHRAGVALGEGKPLEQVLKEVGMV VEGVRTTRVAYELSRQYEISMPITEQAYQVLFQGADPRAAVSALMMRGKKHEIEEVAL IAMEQGSYQENGPDDHGE" gene complement(3613711..3614298) /locus_tag="Dhaf_3380" /db_xref="GeneID:7260398" CDS complement(3613711..3614298) /locus_tag="Dhaf_3380" /inference="protein motif:PFAM:PF02660" /note="PFAM: protein of unknown function DUF205; KEGG: hmo:HM1_1986 hypothetical protein" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002459834.1" /db_xref="GI:219669399" /db_xref="InterPro:IPR003811" /db_xref="GeneID:7260398" /translation="MWEYAIFIIAYLLGAIPFAYWAGRYKGMDVRKHGSGNIGTTNAF RLLGAKLGVLVLLGDALKGALAAYLGYRFFGPWGGIIAGLLAMAGHSWNPFFGFKPSG KGVASGFGIILVLMPKITVMAIVLFVLVVFLTRYVSVGSVLAALTVGILVFLFNEPMA YKVFAVIAVSGVVIRHRTNIQRVLKGTENKFNLKR" gene complement(3614301..3615626) /gene="engA" /locus_tag="Dhaf_3381" /db_xref="GeneID:7260399" CDS complement(3614301..3615626) /gene="engA" /locus_tag="Dhaf_3381" /inference="protein motif:TFAM:TIGR00231" /note="EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains" /codon_start=1 /transl_table=11 /product="GTP-binding protein EngA" /protein_id="YP_002459835.1" /db_xref="GI:219669400" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR013684" /db_xref="GeneID:7260399" /translation="MSKPVVAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYR DSEWLGRKFTIIDTGGIEFVNENTSISAQMRRQAEIAIEEADVIVFVIDAQISPTPDD DMIAQTLRRSGKPVILAANKVENFAKTELYEFYNLGLGEPVPISAVHGMNIGDLLDEV VSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSA FEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTEQD KKIAGYAHEAGKGIVLVVNKWDLIEKDDKTMNRFEKDIREELGFMQYAPTLFISAKTG QRVTKLLDLVDFVAEQNSTRVATATLNTLVREWVHLNPPPTDKGRRLKVLYATQVGVK PPTFVFFVNDHELMHFSYRRYLENQLRSSFGFEGSPIRMIVRQKDEERE" gene complement(3615619..3616947) /locus_tag="Dhaf_3382" /db_xref="GeneID:7260400" CDS complement(3615619..3616947) /locus_tag="Dhaf_3382" /inference="protein motif:PFAM:PF04459" /note="PFAM: protein of unknown function DUF512; KEGG: swo:Swol_1326 Fe-S oxidoreductase" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF512" /protein_id="YP_002459836.1" /db_xref="GI:219669401" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR007549" /db_xref="GeneID:7260400" /translation="MAQGLVVAAVHAGSIAEEMEIECGDQILAIDGQEIGDIIDFQYL TAEDEFTLLLEKAGGELWELEIERSYGEELGMEVQAVSSHGLKLCRNNCIFCFVAQMP QGMRASLYDKDDDYRLSLTQGSFITLSNLDEDEFERILKFHLSPLYVSVHAWDAEARV RLMKNPRAGDLSSQLKRLAEAGIQIHSQIVLVPGYNDGEVLEQTVGELGNLHPSVQSI AVVPVGLTKHRANLPDLRPFTPEEAWSILAKGEMWQKEYRRKTGRSLVYFSDEFYASA GRDYPSIEIYDDFAQLENGVGMASKFRQEFDHARQSLPPAIPQRKVHLITGVSAAPFF EDLLKKLTPIEGLTVQRHTIINSFFGPTVTVAGLLTAQDIAGQIGNIKGEIFLIPRVM LKADEEVFLDDRSVEWLAEELQGIPLVVENQGRAFLEAVTGLDLEGEDCE" gene complement(3616949..3617584) /locus_tag="Dhaf_3383" /db_xref="GeneID:7260401" CDS complement(3616949..3617584) /locus_tag="Dhaf_3383" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459837.1" /db_xref="GI:219669402" /db_xref="GeneID:7260401" /translation="MVFPLGEWLLLSLGFLAWMEWPCFHIEKGLRMIPLAWVLGWIAE HNVAFSPPWDWHFPRIFVLITLTLVAWKKTEERKYPGILLASFCLVAQDLFVLNEPGI FAYEQWLFAGFFVAVAFFSTRSQWGMIAALGGGMLISMAFTVFLFDGVVRYYTIPNAF LWHFSIGACAIIAVLREVREHYQTRKALSLLPMAAPQESQAEEGSVYRKDD" gene complement(3617615..3618802) /locus_tag="Dhaf_3384" /db_xref="GeneID:7260402" CDS complement(3617615..3618802) /locus_tag="Dhaf_3384" /inference="protein motif:TFAM:TIGR02614" /note="TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: swo:Swol_0825 cell cycle protein" /codon_start=1 /transl_table=11 /product="cell division protein FtsW" /protein_id="YP_002459838.1" /db_xref="GI:219669403" /db_xref="InterPro:IPR001182" /db_xref="InterPro:IPR013437" /db_xref="GeneID:7260402" /translation="MPKKRKRSLLGKMPKPLHEVDFYLSIAVLAILAFGMVMVLTAGS VRGYNENDNTFFYVLRQGRWALLGGFAALIMTRIPYPLLKKFAGIGMGVTLILLALVL GSDSGVEAGGASRWLQIGPVQIQPSEIAKIAMILFLVNYIDRYPLKSLRDLAWPSLIL IPLFALVYKQPDLGTTMVLVFTAAALIWQTELSALWFILAVPCLGGPLLYLIYNTSYQ WKRIVVWLDPWKYAMNAGYQITNAQIAFGSGGIFGVGLGRSMQKFGYLPETYTDMIFA LIGEELGLMGALLLISLFILCYGRGFYIARQCPDRFGRLLAFGITFSLAVQTGINLGV VTGVLPVTGITLPLVSYGGSSLVITLVEIGILLNISRYSKISRPHGRSSAMTPVEGRA LRE" sig_peptide complement(3617615..3617740) /locus_tag="Dhaf_3384" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.331 at residue 42" gene complement(3618912..3620897) /locus_tag="Dhaf_3385" /db_xref="GeneID:7260403" CDS complement(3618912..3620897) /locus_tag="Dhaf_3385" /inference="protein motif:TFAM:TIGR00216" /note="these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein" /protein_id="YP_002459839.1" /db_xref="GI:219669404" /db_xref="InterPro:IPR000110" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR003451" /db_xref="GeneID:7260403" /translation="MKIIRAEKAGFCFGVKRALDMAERTVQSSSTASLGPLIHNQQVV EKMEKQGVRVVGEVKETQAGDTLIIRSHGVPPDIYEEARRCQVKVVDATCPFVQKAQR LAAESSQSGQVVVVGDRQHPEVQGILGWAGGNAIAIETLEEARELPFYEQLSVLAQTT QPAANFHGIVDELKTHTHALKVHNTICNATEERQTVARELAGKVDVMIVVGGKNSANT RKLAGICSERTQTYLIETADELEDNWFTGVVTVGLTAGASTPDWIIEEVYRKMSTMEN KETHEMMNMEDWAEGMQNLHRGALVTGTVVKINHDEVFVDLGWKSEGVIALKELTVAS DLQTSDIVAIGDQISAVVLRVENEEGNPVLSKRRADEMAAVDKLKELAESKEEIQGKV ADVVKGGLIVDVGMRGFVPASQIQPGYVEDLNQFKGQTLRLRVIEFDPAKRRVVLSQK EILQEEQAAKKEHLLATLQEGDVVSGVVKRLAQFGAFVDIGGVDGLLHVSDIAYTRIK HPSEYVNVGDEVEVQILKVDKEQGKISLGLKQLKPSPWESAPEKYALGSLVTGKVVRI APFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRISLSI REAAAEAQATEDAELLASQPEAPQVTIGDVVQSESES" gene complement(3621019..3621609) /locus_tag="Dhaf_3386" /db_xref="GeneID:7260404" CDS complement(3621019..3621609) /locus_tag="Dhaf_3386" /inference="protein motif:TFAM:TIGR00530" /note="TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: hmo:HM1_1929 1-acyl-sn-glycerol-3-phosphate acyltransferase" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="YP_002459840.1" /db_xref="GI:219669405" /db_xref="InterPro:IPR002123" /db_xref="InterPro:IPR004552" /db_xref="GeneID:7260404" /translation="MNLYQFLKRIFRLQFRVMGWKIHGVENLPKEGPVIIVSNHVSIW DPVVAACSVPRDVSFMAKEELFANPLLGGIFRRLGAFPVKRGQGDTSAIRNSLKVLKE EKVLGLFPEGTRSKTGAIQKGFPGMILLMEKSQAPIVPVRVNGTQNLFVRGWGHLEVI VGKPIFPEQLKAPEGVENRREWAADQIMKAIVELKA" gene complement(3621606..3622304) /locus_tag="Dhaf_3387" /db_xref="GeneID:7260405" CDS complement(3621606..3622304) /locus_tag="Dhaf_3387" /EC_number="2.7.4.14" /inference="protein motif:TFAM:TIGR00017" /note="KEGG: lfe:LAF_0879 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region" /codon_start=1 /transl_table=11 /product="cytidylate kinase" /protein_id="YP_002459841.1" /db_xref="GI:219669406" /db_xref="InterPro:IPR003136" /db_xref="InterPro:IPR011994" /db_xref="GeneID:7260405" /translation="MKKNLQIAIDGPAGAGKSTIAKAIARQLGFFYVDTGAMYRAIAY KALRLNIALTQEEEIAGMARQTEITLEHSAARRVFCDGLDVTEAIRSPEVSRSVSIIA AYPEVRERLVELQRQEAGQGGVVMDGRDIGTYVLPDADLKIFLTASSEERARRRWLEL QRAGKELSLAEVQRDMDARDHYDQQRAVSPLIPAADAILLDTTGLQIEEIVDRILSLF NDKVETGYVRSQNQ" gene complement(3622394..3623077) /locus_tag="Dhaf_3388" /db_xref="GeneID:7260406" CDS complement(3622394..3623077) /locus_tag="Dhaf_3388" /inference="protein motif:PFAM:PF02517" /note="PFAM: Abortive infection protein; KEGG: btk:BT9727_0547 CAAX amino terminal protease family protein" /codon_start=1 /transl_table=11 /product="Abortive infection protein" /protein_id="YP_002459842.1" /db_xref="GI:219669407" /db_xref="InterPro:IPR003675" /db_xref="GeneID:7260406" /translation="MMPRKLTWVDLFYALLGIIFLYLGVGYVMAWFASWWEYERVLLY VNGFVTQGMFLVVIIAIMKVRRWTWSDLGWKDVKGRYVGSVIAFYILTWIINIFYAAY LLQKGFTPPDTDVYTQLMGNATVVTFCLNLILAGMLAPIIEETMFRGIIFGSLQTYMG KWTAAAVSAAIFSGLHLQSYGFLPRFVLGMVLAYLVMKHKSIKPAVALHAVNNIVALL LVALSEGLV" gene 3623232..3623513 /locus_tag="Dhaf_3389" /db_xref="GeneID:7260407" CDS 3623232..3623513 /locus_tag="Dhaf_3389" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459843.1" /db_xref="GI:219669408" /db_xref="GeneID:7260407" /translation="MDGIDSIVVDTAPVTTLQVFHKRLKIPLPVYLDGVAEFTDPWDE QAYQLFVQHYLDEMKDPGILGMVRQEHDDHYVYLDAVIRYPSESPLGSQ" gene complement(3623628..3625433) /locus_tag="Dhaf_3390" /db_xref="GeneID:7260408" CDS complement(3623628..3625433) /locus_tag="Dhaf_3390" /inference="protein motif:TFAM:TIGR00795" /note="TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bha:BH1831 L-lactate permease" /codon_start=1 /transl_table=11 /product="L-lactate transport" /protein_id="YP_002459844.1" /db_xref="GI:219669409" /db_xref="InterPro:IPR003804" /db_xref="GeneID:7260408" /translation="MSTGLLAILSLMPILVVAIFLVGLKWPASKAMPISFVVAVVLAL FVWKVPGAQVGAATVNGIVTAITLLYIIFGSILLLNTLQESGGLQTIRNGFTDITPDR RIQVIIVAWLFGSFIEGSSGFGTPAAVAVPLMVGLGFPAMAAVVAGMMIQSTPVSFGA VGTPMLTGVSSGLKTVELEAYASSLGFSDWHNFIAFGIANKVALLHVTAGILMPLFVV AFMTRFFGKNKSFSEGLAVWPFAIFAALAMTVPYLIVANLLGPEFPSMLGGLIGLAIV VPAAKKGFLMPKGEAWDFDEKKNWDPSWTGSVEIQNIAAKNKMSGLVAWMPYVLIGLT LVATRVSFLPLATLLKKAKIVIPNIFGTSISASWEILFSPGSAFIFVTIITFFLHKMD GAAYGRAWKSSFKTMLGAGSALIFTVPMVQVFMNSGGGLAGFEKMPIVLAEAVAGLAG SAWPLFAPTIGGLGAFVAGSNTVSNMMFSLFQFGVGERIAVDPTWIVALQAVGGAAGN IICVHNVVAASAVVGLLGKEGLVIRKTFFPFLYYAFLPAAIGYSIIYTPASSIFNIGT IIAVAVYTAAIVIIATNKGRLAKLPPMTPNRKINA" gene complement(3625930..3627801) /locus_tag="Dhaf_3391" /db_xref="GeneID:7260409" CDS complement(3625930..3627801) /locus_tag="Dhaf_3391" /inference="protein motif:PFAM:PF02652" /note="PFAM: L-lactate permease; KEGG: rca:Rcas_1588 L-lactate transport" /codon_start=1 /transl_table=11 /product="L-lactate permease" /protein_id="YP_002459845.1" /db_xref="GI:219669410" /db_xref="InterPro:IPR003804" /db_xref="GeneID:7260409" /translation="MSILLQGFLALLPILVVAIFLVGLKWPASKAMPLSYITVVIVGL LVWKLPVIQIVGGTVKGLVVALSLLYIIFGSVLVLYTIMESGGLAQIRQSLIGVSADR RIQVIIVAWLFGSFIEGASGFGTPAAVACPLMLGLGFPAFAAVIAGMMIQSTPVSFGA VGTPIRTGVGTGLGAGTDPGINEFASNLGINIVDAAGTLNPIAYYDQFIALIAHNVAI LHFVGGFLTPLFVVAFLTRYFGKNKSWSEGIAIWPFALFSALAFTIPYVLINRFVNYE LTSMLGALIGLVIVIFAAKNKFLTPKEEDTWDFIDKKDWDPSWTGNIEVHYVEKPGGM STLVAWLPYIFVAGLILITRFIPPLKAFLNDVAITYPAIGGLTEKWVILYSPGTIFII VSLLTFLVHGMKTDSYVKAWKQAGKVTAGASVALIFTVPMVQVFINSGGGAAELLKMP YALAEATYQLAGGLWPLFAPIIGGLGAFVAGSNTVSNMTFSLFQFQTAQLIVDGNPAL APMAMQWPLWVVALQAIGGAAGNVICIHNVVAASAVVGFLGREGETIRKTFMFFLYYA FIPGAFGYSLLYWNAQGPFNLGSIILAVFYAVLIYVIATNKNRLKKLNTSIPKSINT" gene complement(3628557..3629864) /locus_tag="Dhaf_3392" /db_xref="GeneID:7260410" CDS complement(3628557..3629864) /locus_tag="Dhaf_3392" /inference="protein motif:TFAM:TIGR01356" /note="TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bld:BLi02395 3-phosphoshikimate 1-carboxyvinyltransferase" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="YP_002459846.1" /db_xref="GI:219669411" /db_xref="InterPro:IPR001986" /db_xref="InterPro:IPR006264" /db_xref="GeneID:7260410" /translation="MQINNESKGIRINPMGRIQGEIEVPGDKSISHRAALFGGMAQGE THITNFLLGQDCLSTLACLKTLGVEWERRDAEVWIRGRGFENWHEPQDILDVGNSGTT MRLMLGVLAGCPFSATLTGDSSIRSRPMARVTLPLQEMGARILGRQEGKYAPLTIQGG LLQGIQFRSPVASAQVKSAILLAGLRAKGETMVTEPCLSRDHTERMLRGFGVDLKSEG RTAKVRGGAALSGQEVAVPGDISSAAFFLVLGTLIPQGELLIKNVGMNPTRTGILDAL WQMGADIQVEEEREECGEPRANLRVRPAQLHGIEIQGEMIPKLIDEVPVLAVAASLAQ GETVIRDAAELRVKETDRIQTVVQGLQALGANAQELPDGLRIQGAKSLRGGAAHSHGD HRLAMAWVVAGLLAEEGISLQGIEAAEVSFPNFLELIHEIAES" gene complement(3629851..3630762) /locus_tag="Dhaf_3393" /db_xref="GeneID:7260411" CDS complement(3629851..3630762) /locus_tag="Dhaf_3393" /EC_number="1.3.1.12" /inference="protein motif:PRIAM:1.3.1.12" /note="PFAM: Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase" /codon_start=1 /transl_table=11 /product="Prephenate dehydrogenase" /protein_id="YP_002459847.1" /db_xref="GI:219669412" /db_xref="InterPro:IPR003099" /db_xref="GeneID:7260411" /translation="MEKGREIILSGGWTGQRQPRACVIGLGLIGGSWAGALAGQGWSV CAVECHEESLKEAKVREWIKEGWQEIPESLDVDLVILATPVSLLAESFARAVGCVSAG SLITDVGSVKIDICRAANQMNSVYFIGGHPMTGSEQQGFQAAKPNLFQGYPYVITPPP SCPQEMVEKFSQLVQRLGARIVSREAEDHDDEVALISHLPHVLSLALALTAAEGNLRG KPLEIAGRSFREITRLVDSSPEMWRDILFSNASAILRSLDIWEEKVKEIREIIAGADG EEMLKVFARAQGARSQMLNRRESDANK" gene complement(3630762..3631790) /locus_tag="Dhaf_3394" /db_xref="GeneID:7260412" CDS complement(3630762..3631790) /locus_tag="Dhaf_3394" /inference="protein motif:TFAM:TIGR01361" /note="catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate" /codon_start=1 /transl_table=11 /product="3-deoxy-7-phosphoheptulonate synthase" /protein_id="YP_002459848.1" /db_xref="GI:219669413" /db_xref="InterPro:IPR006218" /db_xref="InterPro:IPR006268" /db_xref="GeneID:7260412" /translation="MIIVLKRGAGEAEVQEINERLSQEGFKIHLSQGVEKIIIGAVGD RSRLKALDLEALPWVEKVVPILAPYKLVSREFQSGNTIIKIGDYEIGGEEIHVMAGPC SVESRAQIIETAHAVKEAGATFLRGGAFKPRTSPYAFQGLEEEGLKLLAEAREETGLL VITEVVDVRDVELVAHYADILQIGARNMQNFFLLKEVAKTNKPILLKRGPSATLEEWM MAAEYIMDGGNYQVMFCERGIRTFETYTRNTLDLSMVPALQSLSHLPVIVDPSHGTGR WNLVPPMAKAAVAAGADGIIVEVHPQPEKAVSDGKQSLTPDNFASMMAELEILAQALG RPVKGARR" gene complement(3631871..3632236) /locus_tag="Dhaf_3395" /db_xref="GeneID:7260413" CDS complement(3631871..3632236) /locus_tag="Dhaf_3395" /inference="protein motif:TFAM:TIGR01796" /note="TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: swo:Swol_1395 chorismate mutase" /codon_start=1 /transl_table=11 /product="chorismate mutase" /protein_id="YP_002459849.1" /db_xref="GI:219669414" /db_xref="InterPro:IPR008243" /db_xref="GeneID:7260413" /translation="MTRVRGIRGAITIQENNAEHIREGTQELLQEMIKRNSLATTDII SAIFTLTKDIDAAFPATFARQLGWDRVPMICLNEVPVPGSLPMCIRVLLHVESALTQE EIQPVYLRDAVNLRRDLVE" gene complement(3632254..3632682) /locus_tag="Dhaf_3396" /db_xref="GeneID:7260414" CDS complement(3632254..3632682) /locus_tag="Dhaf_3396" /inference="protein motif:PFAM:PF09021" /note="PFAM: HutP family protein; KEGG: pth:PTH_1631 hypothetical protein" /codon_start=1 /transl_table=11 /product="HutP family protein" /protein_id="YP_002459850.1" /db_xref="GI:219669415" /db_xref="InterPro:IPR015111" /db_xref="GeneID:7260414" /translation="MVAESKKIAMAAMRMAMAESREEEVHLKDGFGRHGIRTVAVDYG GEYLTAIKKIVERAIVAAKREGVIQETHGDEGAVAGATREALSQIMPKAMGLNIGGKI GIARRDEHLSVAVFFGVGLLHLDEVAVGLGHRAAPKEIKD" gene complement(3633024..3634193) /locus_tag="Dhaf_3397" /db_xref="GeneID:7260415" CDS complement(3633024..3634193) /locus_tag="Dhaf_3397" /inference="protein motif:PFAM:PF06965" /note="PFAM: Na+/H+ antiporter NhaA; KEGG: gsu:GSU2303 Na+/H+ antiporter family protein" /codon_start=1 /transl_table=11 /product="Na+/H+ antiporter NhaA" /protein_id="YP_002459851.1" /db_xref="GI:219669416" /db_xref="InterPro:IPR004670" /db_xref="GeneID:7260415" /translation="MSTQKKTINFLQEFSIPLILGVLIALVWANLAPENYHHFVHNEI IGHISLHFFVNDIFMVFFFAMAAIEITQSLLPGGSLNPLKRAINPLMATLGGVLGPAL VFLGLNALIGSPEFARGWGIPTATDIALAWLVARVVFGAQHAAVSFLLLLAIVDDGIG LMIIAFFYPDPANPVAPLWLLLTVAGMLVAYLLRRKNVQSYWPYIILGGILSWAGLYL AHIHPALALVFIVPFLPHPPREEFGLFEDDPQDHSTLKTFEHEWKIFVDFGLLLFGLT NAGVEFSEINTLTWLVLIALVGGKTIGIFLMGSLATVIGFPFPKGMGYKELLVAGVIA AMGLTVALFVSGVAFIDPGLQGAAKMGALFSAVAAVIAFALGKVLGIKKVKDTQA" sig_peptide complement(3633024..3633113) /locus_tag="Dhaf_3397" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.919) with cleavage site probability 0.915 at residue 30" gene complement(3634574..3635143) /locus_tag="Dhaf_3398" /db_xref="GeneID:7260416" CDS complement(3634574..3635143) /locus_tag="Dhaf_3398" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459852.1" /db_xref="GI:219669417" /db_xref="GeneID:7260416" /translation="MRRWQFFSKYKKRSGFIPRSGRSASRVRNYRHSAPTGLLRFEKV IIRAVVLSAVFLVLAQMALGLAKDPVGYYISVAQNIEAPSLDSTPVSSTVTPNLIQET IPQTSLITLKAVPAAPVRVIQNGKTLGTLARGELEIPAQTGVIQLDGTNVPTIVRIQV IKKDSALTEPRLNQTLMIEHNIQTLRVGR" sig_peptide complement(3634574..3634768) /locus_tag="Dhaf_3398" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.897) with cleavage site probability 0.497 at residue 65" gene complement(3635236..3636495) /locus_tag="Dhaf_3399" /db_xref="GeneID:7260417" CDS complement(3635236..3636495) /locus_tag="Dhaf_3399" /inference="protein motif:PFAM:PF03486" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_0708 FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="HI0933 family protein" /protein_id="YP_002459853.1" /db_xref="GI:219669418" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002218" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7260417" /translation="MKKERVIVIGAGAAGLMAAGQAALKGADVLLLEKKERPGRKIAI SGKGRCNLTNAENVGDFIRNYPGNGRFLHGILREFDNVRLCDFFAQYGVETKTERGGR VFPVSDDAEQIVEALLKYIMDAGVELATGQTVEEILLGEEKVRGVRLSNGKVLEGKSV IVCTGGGSYPATGSAGDGYKMAQKLGHKVIPPRPSLVPLRTYEDWVKQVQGLSLRNVE ATLWYGGKKQQTEFGEMLFTHFGVSGPIILTLSRWAGEALAGGEKVRLTLNLKPALTA EQLDQRVQRDFKKYLNKQFKNSLDELLPKSLIPLVIQWSQIPPEKAVNSINKEERKHL VHVLQELPLTIKETLPLAAAIVTAGGVDVKEIDPKTMASKKIKGLYWAGEVVDVDGVT GGYNLQAAFAMGYRAGRGAGEYASVDD" sig_peptide complement(3635236..3635304) /locus_tag="Dhaf_3399" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.604 at residue 23" gene 3636640..3636948 /locus_tag="Dhaf_3400" /db_xref="GeneID:7260418" CDS 3636640..3636948 /locus_tag="Dhaf_3400" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459854.1" /db_xref="GI:219669419" /db_xref="GeneID:7260418" /translation="MELDQKTTLLIQISAAAATNALASLRSAVTDAKALGVPNETLRQ AIELALEIQQQPLSHTQHLMNQLLREPIKKGTSKQDGSSPAPHVHGPGCSCGHHHHHN" sig_peptide 3636640..3636711 /locus_tag="Dhaf_3400" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.789) with cleavage site probability 0.646 at residue 24" gene 3636993..3637376 /locus_tag="Dhaf_3401" /db_xref="GeneID:7260419" CDS 3636993..3637376 /locus_tag="Dhaf_3401" /inference="similar to AA sequence:KEGG:Cbei_0045" /note="KEGG: cbe:Cbei_0045 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459855.1" /db_xref="GI:219669420" /db_xref="GeneID:7260419" /translation="MFCRECGMEIGKKVKVCPNCGVKPLHGTKHCQACGANTKSKHEL CKNCGAQLITKGAALKEENAPKTAKAASFCMPVVGIILFFIWHAKEPEKAKSICNWTI GGVAFGMILYVFGIVWGGFSAATGY" gene 3637379..3637747 /locus_tag="Dhaf_3402" /db_xref="GeneID:7260420" CDS 3637379..3637747 /locus_tag="Dhaf_3402" /inference="similar to AA sequence:KEGG:Cbei_0044" /note="KEGG: cbe:Cbei_0044 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459856.1" /db_xref="GI:219669421" /db_xref="GeneID:7260420" /translation="MNINIGKALHYLFLCHRLPERSFFFRGRQFPVCARCTGIAFGYI LGALLALKYHPVPLGTIILLLIPLGIDGSVQYLGLGESTNKRRLLTGIGAGIATVFLL AKIILMGINHGRLLYDYIMF" gene complement(3637777..3638820) /locus_tag="Dhaf_3403" /db_xref="GeneID:7260421" CDS complement(3637777..3638820) /locus_tag="Dhaf_3403" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_2610 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459857.1" /db_xref="GI:219669422" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260421" /translation="MLNTCQMVYHHKNCLNTKKPYAKPCRLCIEACPHQAVSEYREID AKKCTECGACMAVCPSDGFVDRSTDLLHTYLEEQGEIILNCPQAAPLGFEIPCLGVID GDLWLALIHAAKEKNVVIHTGKCAECPDKKACALSVKTFKAIHESWPDHPPIVIQVSP DQPGEAATPGTGSPSRAALPQKEPAEKRGWRKKGWEKLETILPGLTADEAYPIPRTRQ LLVKRMQAYPQDKMPIPALQVGNICTSCGVCAAICPQAALTKRENGDELTLIYEPYKC VRCQRCVTICNPKALEFVPKQLSHRHYTGKILLHKGSPKHCTRCGKLVFDNSEPPMCV ACASSSGDSIFNA" gene complement(3638943..3639680) /locus_tag="Dhaf_3404" /db_xref="GeneID:7260422" CDS complement(3638943..3639680) /locus_tag="Dhaf_3404" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="GntR domain protein" /protein_id="YP_002459858.1" /db_xref="GI:219669423" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7260422" /translation="MELKPIKTRKIYEEIVEQIRELVARGELKPGDRLPSERDLVERL KVSRASIREALSALELMGLLEVRSGEGTFVRRLRSESVVAPLAWMLTMEKGTVLELLE IRKILEVQAVGMAAERAEAEDIRELSAALDRLQDDLHSPTSDGSSDHRFHYAITRATK NKIMIRLMDTISDLMKYSLKASRSKLYEGKYTPALLFQEHKKIYEAIVAKDVEMARNY MLTHLTGVEEEILKGFDEENEAITPIY" gene complement(3639835..3640554) /locus_tag="Dhaf_3405" /db_xref="GeneID:7260423" CDS complement(3639835..3640554) /locus_tag="Dhaf_3405" /inference="protein motif:PFAM:PF07729" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="GntR domain protein" /protein_id="YP_002459859.1" /db_xref="GI:219669424" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:7260423" /translation="MDLKPIKTKKIYEEIIEQIRVLVVKGDLKPGDRLPSERDLAVRL NVSRASVREALSALEMMGLLEIRSGEGTYIKKINLDSVVTPLTWVLSMEKDTILELLE VRKMLEGQTVTLAAKRATSDDLRELEGALKAMHDDVQTGQLGEEADLRFHYAVARASK NKILVRLMNAISDTMHQSLKASRVRLYEEHATPEILYKEHVLILDAIQMKNDEQARQY MLEHLAGVERRLMNYYSSNNV" gene complement(3640673..3642337) /locus_tag="Dhaf_3406" /db_xref="GeneID:7260424" CDS complement(3640673..3642337) /locus_tag="Dhaf_3406" /inference="protein motif:TFAM:TIGR00795" /note="TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: chy:CHY_0431 L-lactate/glycolate permease" /codon_start=1 /transl_table=11 /product="L-lactate transport" /protein_id="YP_002459860.1" /db_xref="GI:219669425" /db_xref="InterPro:IPR003804" /db_xref="GeneID:7260424" /translation="MPWTQDYAALGGSLGLTALAVSIPIVFLFWALAVKGMKGYVAGL ITLAISIVDVIIVYKMPVTLALSATAYGMLYGLWPIAWIVITAVYLYNLTVVSGQFDI IKSSIASISDDRRLQALIVAFCFGAFLEGAAGFGAPVAITGALLIGLGFDPIKAAGLC LIANTAPVAFGAIGAPIITAGAVTGMGDFVISQAVGRQLPFLSVIIPLYLVILMAGWK SAKEVMPAILVTGVSFAVAQWWSANYLGAYLPDIISSLFSLVCTTVFLRFWKPKTVWR FPHERGTKEPEMKKYTGGQIAKAWSPFVILTVMVTIWGTPSFKTFILDKLHLVLKFSW PGLDGLIYKAAPIVAKPTVYEAIFKWDFLSAGGTAILIAAIISTIILGIKPSTAVKVF GDTLKQLMYPVINISAVLGFAYLANYSGLSYTLGLFFASTGAFFPVLSPVLGWLGVFL TGSDTSANALFGKLQQVTAEQLGMNPVLTVAANSSGGVVGKMISPQSIAVAAATTLVG RESELFKFTVKHSLAMLAAVIVIICLQAYVVPGMIPVIADAAAFLH" repeat_region 3642581..3644173 /note="ISDha3" gene 3642759..3644003 /locus_tag="Dhaf_3407" /db_xref="GeneID:7260425" CDS 3642759..3644003 /locus_tag="Dhaf_3407" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: drm:Dred_1795 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002459861.1" /db_xref="GI:219669426" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7260425" /translation="MQDKDTTQSTFMQAFQPFFSKDLWETIHREVPGLDLRSQKLTTN QLTLLISHAQLQEYRALRKISTSVHHDSLGQAIGLESISHSQISRRLKTLPTQVPEML FKGTLHNVAQKQGYGKIRQQLGKLYMIDASTMSLCLSRYPWAVFRKSKAGVKMHLRLS FDAMAVPDEVLVTPAKTADRKKLDELIVQDQEALNIFDRGYVDYKLFDDYCEKGIRFV TRLKNNAVIEFTGVERPVKEDGLIEEDVDVILGAGSRKMKHTLREVTIDDNVHEPFTI LTNDFNLSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVINQILLALMMYC LLVLLKLEAGYPRDLLTLQRLLIACLFERYEEFLEKLRRRRRKGSKRIRYEEIYRMTE HSILKEEETQWLDDLTYDPVIL" gene complement(3644287..3645945) /locus_tag="Dhaf_3408" /db_xref="GeneID:7260426" CDS complement(3644287..3645945) /locus_tag="Dhaf_3408" /inference="protein motif:TFAM:TIGR00795" /note="TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: chy:CHY_0431 L-lactate/glycolate permease" /codon_start=1 /transl_table=11 /product="L-lactate transport" /protein_id="YP_002459862.1" /db_xref="GI:219669427" /db_xref="InterPro:IPR003804" /db_xref="GeneID:7260426" /translation="MPWTQNYSALGGSIALTALVVSIPIFFLLWALAIKRMKGHIAGM STLLITLVIVVLVYKMPISIALSASLYGILYGLWPISWIVVTAVFLYNLTVEAGQFDV IKGSISSISNDRRIQALLVAFCFGAFLEGAAGFGAPVAISASILIGLGFNPLYAAGLC LIANTAPVAFGAIGAPIIAAGAVTGMGDFVISQAIGRQLPFLSVIIPIYLVVLMSGWK GAKEVLPAALVAGIAFAVAQWWSSNHLGAYLPDIISSLFSLIALTLFLRVWKPKNNWR FPHEEGKEDNVVAQRFTAGQIIKAWSPFAILTVLVGIWGTPGFKTWATNAGLYVNIAH WPGLDGLVYKAAPIVAKPTVYAAAYKWDWFSAAGTAILISAIISMFILGVSPGRAWKV FVKTLKQLTFAIINIASVLGFAYLANYSGLSYTLGLLFASTGSLFPFLSPVLGWLAVF LTGSDTSANALFGKLQQVTAEQIGVNPVLTVAANSSGGVVGKMISPQSIAVAAAATSL VGRESELLRFTLKHSLILLLVICIMITLQAYVVPGMIPVITAGP" gene complement(3646086..3646547) /locus_tag="Dhaf_3409" /db_xref="GeneID:7260427" CDS complement(3646086..3646547) /locus_tag="Dhaf_3409" /inference="similar to AA sequence:KEGG:Dred_1144" /note="KEGG: drm:Dred_1144 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459863.1" /db_xref="GI:219669428" /db_xref="GeneID:7260427" /translation="MKIRIGNEVLTEHIRARIRLDFRGEGKSGRFIFGGKTQEEIAEQ VREQEVALLRNVPMQGIFLEDIDVSLDLYTVTESDGRRKREVAYAPVILTLRLENLDD LLPFTIKPEFRKIEFLSPENLQIHRLDVERLFFRVSQSIQEEVKKAELRFQ" gene 3646820..3647332 /locus_tag="Dhaf_3410" /db_xref="GeneID:7260428" CDS 3646820..3647332 /locus_tag="Dhaf_3410" /inference="similar to AA sequence:KEGG:CHY_1937" /note="KEGG: chy:CHY_1937 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459864.1" /db_xref="GI:219669429" /db_xref="GeneID:7260428" /translation="MSRTILAVFKGPQQTKEAVEEIQGESLANSNISVIVRAGYLHQG DVKEEIANELAFVPPEINFDRFNAWLVQAPPMDIPNLGECVAAGPLANDLLHRPHGQG LVEALLSYGLSPERARHYEYEVRTGHFLVLITTEQEKVNSVANALQKFGGRDIEKWNK SLDHALHMPH" gene complement(3647350..3648117) /locus_tag="Dhaf_3411" /db_xref="GeneID:7260429" CDS complement(3647350..3648117) /locus_tag="Dhaf_3411" /inference="protein motif:PFAM:PF00849" /note="PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: lsp:Bsph_1722 ribosomal large subunit pseudouridine synthase B" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_002459865.1" /db_xref="GI:219669430" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="GeneID:7260429" /translation="MNRNNERGRPRQEERLQKVLAQAGIASRRHAEEIILQGRVKVNG EVIRTLGTKVVSTDRIVVDGRLLSIPQNDYAYYLLHKPTGYITSVTDPQGRKTVMELM PKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALK RLEKGVLLEDGKTAPARIREVSPKGRGSLPTYEITIHEGRNRQVRRMFKAVGFPLSTL KRLRFGPLELDPSLAPGAFRTLSKTEIQHLRRAVKLT" gene complement(3648141..3649556) /locus_tag="Dhaf_3412" /db_xref="GeneID:7260430" CDS complement(3648141..3649556) /locus_tag="Dhaf_3412" /inference="protein motif:COG:COG1807" /note="KEGG: hmo:HM1_0452 dolichyl-phosphate-mannose-protein mannosyltransferase, putative" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein" /protein_id="YP_002459866.1" /db_xref="GI:219669431" /db_xref="GeneID:7260430" /translation="MGLGGMGRRVNGILVLILIVGAVLRLKGVTNPYLDDQGWRQADT ASMALNMLGHLGDFPDVLFPMLNYDGAGPQPVELEFPFFPYLLAWTWTWLGWQDLWGR LWGICFSLLTIGGIYQFGRLALSGRAGLWAAAFYAFLPLTTYYGRVVMPEPVAQAFSI WALVAIVSWRNKPTRRHLLGASILMAGAVLAKLPQLMIFPVALLLGFYPLRRKIGKLL VYSFLSLVLPMLYYSWVHFGAGEASQFVSGILSHQVIEGSTGYGEILYKNLKSGLGLP LLLALMGIALIVQKKAFQKEGHLALLLWAGISSVYLVVICLRIPLDYYLIPLALPIVL LAGYALDVWGGNREGNGVPAFVVGIVLIGLLWVNQTLYYGSKYQWNEELLTQAQWLRQ HTEADSVLVLSGPQPMTLYYSQRYGYRLIRDDSQAWEDLQEMPGDYLVALPDSRGEDF WERVESAYAQVGPGVYQLNGK" gene complement(3649526..3650317) /locus_tag="Dhaf_3413" /db_xref="GeneID:7260431" CDS complement(3649526..3650317) /locus_tag="Dhaf_3413" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: hmo:HM1_0450 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002459867.1" /db_xref="GI:219669432" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7260431" /translation="MLFVVLPAYNEEAGLQPLLDDISKACQGIPLQIIVVNDASTDHT LEIARDYALSNPAVQVLSHTRNKGLGGSLMTGFKHVFAQRRMLGEQSGEWIGHDDVIL TMDADNTHPAERIPLMAELIQQGADLVVASRYAPGGKQYGLNPLRQVLSWGAGQVMTV FFPVEGLRDYSCGYRAYRASVLESAYIIYGEELIESRSFAGMVELLVKVANYCGEIRE IPFDLHYEKKQGKSKMKILATIMGYFALILRLKKEKWGWVEWVGE" gene complement(3650360..3650899) /locus_tag="Dhaf_3414" /db_xref="GeneID:7260432" CDS complement(3650360..3650899) /locus_tag="Dhaf_3414" /inference="protein motif:PFAM:PF07670" /note="PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1355 nucleoside recognition" /codon_start=1 /transl_table=11 /product="nucleoside recognition domain protein" /protein_id="YP_002459868.1" /db_xref="GI:219669433" /db_xref="InterPro:IPR011642" /db_xref="GeneID:7260432" /translation="MSFIAEISRWAIPLLLLFIPLIAFLRGVPVYESFVTGAEEGFKT AIKILPFLVGMLVSIRIFVDSGALEILAGLLQPIFTIFGLDSELTAIIPLAVMRPLSG SGALGVATQLINQYGPDSFIGRLASTLQGSTDTTFFVLTVYFGSVGIKKYRYALKLGL MADLIGLIASLWIVHRMFY" gene complement(3650896..3651477) /locus_tag="Dhaf_3415" /db_xref="GeneID:7260433" CDS complement(3650896..3651477) /locus_tag="Dhaf_3415" /inference="protein motif:PFAM:PF07670" /note="PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1356 nucleoside recognition" /codon_start=1 /transl_table=11 /product="nucleoside recognition domain protein" /protein_id="YP_002459869.1" /db_xref="GI:219669434" /db_xref="InterPro:IPR011642" /db_xref="GeneID:7260433" /translation="MVNAIWLFMLVTGIIVAALNGRIDTVTESAMKAAELGVETAFGL IGVMSLWLGLMKLAEEAGFVRALARFFGPVIRRLFPTIREDSPALGAIILNLSANVLG LGNAATPFGLKAMQELQKENPNPDTASPAMITFLALNTSCITLIPATIIAVRLKAQSV HPTEIIGPTIFATGCAMTIAILVDYLIRRRSRP" gene complement(3651758..3652255) /locus_tag="Dhaf_3416" /db_xref="GeneID:7260434" CDS complement(3651758..3652255) /locus_tag="Dhaf_3416" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459870.1" /db_xref="GI:219669435" /db_xref="GeneID:7260434" /translation="MYTFERDKMRFPISDEELERRWALVRAAMKAENVDILVMQNDHQ YRSGMVRYFTDIGSLSNPVTVVFPYDDEMTLIANGGGYNPAQTPAWGCRGVKTRLGVP IFPTYVEELNTRDAQAVLHMKNIAIHPTLARNGAYISVTDNFLVTANGPERLHQFPQE IMIID" gene complement(3652286..3653320) /locus_tag="Dhaf_3417" /db_xref="GeneID:7260435" CDS complement(3652286..3653320) /locus_tag="Dhaf_3417" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A2676 putative D-3-phosphoglycerate dehydrogenase,NAD-binding" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /protein_id="YP_002459871.1" /db_xref="GI:219669436" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:7260435" /translation="MAHTVYISDDYDLQETMDNISARLSECGIRVIRGPKTIKGKKLV ISPEEYEKYFADVEVALFSSRSVCPAELIRCARKLKGLVCPTIGTDSLDMKTANELGI IVGNGACPENYIGMAEANVLLTLMLMYNPNKSMEIVQKNLPKPVESQHWARLLWQKTV GVIGFGRIGRAYIERLQNFDLRILVYDPYVKVEAIPAYAQITDLDTLLRESDLVNVFL PVNEETRDLVNDQFLSKMKPTAYFINTSRGQIVDEDALCRALREKRIAGAALDTFKVE PLPLDSPLREFGNLILTPHLIGHTLENQLAFADIGVENITRILKGELPLYCVNPQTEQ RWRERLATLA" gene complement(3653432..3654757) /locus_tag="Dhaf_3418" /db_xref="GeneID:7260436" CDS complement(3653432..3654757) /locus_tag="Dhaf_3418" /inference="protein motif:PFAM:PF07158" /note="PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: aby:ABAYE1770 hypothetical protein" /codon_start=1 /transl_table=11 /product="Dicarboxylate carrier MatC domain protein" /protein_id="YP_002459872.1" /db_xref="GI:219669437" /db_xref="InterPro:IPR004680" /db_xref="InterPro:IPR009827" /db_xref="GeneID:7260436" /translation="MVTSIPSISLLLGAFFVAAIVIAFVKKVNIGVLGLAFAVLLGLL TDLKWKDLPGAFPTTVVLTIFSVTLFFGFFAENGTIQYLANKFLWKFRNTPKLIPFAF YLLGILLAALGGCDMVVFTAAVAFPVGKSIGMKGQHVGVCAMLGSMAGSFLPWSLHGS TAKAIIETMNDGKWAHVANTISWGTFFSAFAIYLVIILIYYFVFKGHKLSGQAEMEEP AAATPIQKKSLVIILGAFFLIVVVPVLTKMIGGSFLTTINRFSSVAPVCIVGAVVNML MNIGDDKAVLKKRIPWNTLAMLWGMGILLGLGATLGVNKYLGELAEHIPTGMVLVSFL LIAGGLSLFSSSLSVVYPLLLPIAGVVAPNLGLNPVAIMAAIIIGSATTAMSPLSTAG GLLLSSCPDEVYDNSMMFNNMFIMAVITMALLAVAGAVGMIGLWGTLHL" sig_peptide complement(3653432..3653503) /locus_tag="Dhaf_3418" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.962) with cleavage site probability 0.602 at residue 24" gene complement(3654794..3655972) /locus_tag="Dhaf_3419" /db_xref="GeneID:7260437" CDS complement(3654794..3655972) /locus_tag="Dhaf_3419" /inference="protein motif:PFAM:PF00557" /note="PFAM: peptidase M24; KEGG: pfu:PF1343 xaa-pro dipeptidase (proline dipeptidase)" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_002459873.1" /db_xref="GI:219669438" /db_xref="InterPro:IPR000994" /db_xref="GeneID:7260437" /translation="MQLNRYAKIVSPTSHKEFDRRHGAVQAKMKEKGIEGILLYGSYI RQCGAIRYFVDFPTGGTNGLYAIMPDEGGLALFGHGHVNSTTIPKELAYRVDVNFGYP YAGIAGFTLPHIFDEVVKYVKKRNMKRIGLYRTGMLPYDFVRTIADNIPGVELVQVDD MLDEIMAVKSEEELEICRYVCKVHDQIYAALPVLVRPGKREKDLTNEIQKIATDLDCE GLNIMIGAGNPMAHHQHYFFQNKVIQENDYIDLLVEVSVAGGYYGELSRMWSLSEPDE EMIELNKHSMEVQDILAAAARPGVPAAKLMEILHDYQKEHGYKLEDRFFGHSQGLDLT QRPLYAYDENMLLQENMFISIHPAMENSHMWAFNTDNYIITKEGAVRVNQTPRGIFRV" gene complement(3656367..3657128) /locus_tag="Dhaf_3420" /db_xref="GeneID:7260438" CDS complement(3656367..3657128) /locus_tag="Dhaf_3420" /inference="protein motif:PFAM:PF00596" /note="PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr6791 adducin" /codon_start=1 /transl_table=11 /product="class II aldolase/adducin family protein" /protein_id="YP_002459874.1" /db_xref="GI:219669439" /db_xref="InterPro:IPR001303" /db_xref="GeneID:7260438" /translation="MIDHHSVGEEFNLYPKTEKEAMEQCIIVNRILANEGILDVLGHI SVRNPVKGDTFFQACRSFPGDVTRDDILEIDLEGNIVSEKKKSLYREVGSHAVIFAAR PEVNAICHSHCDDWLPYVCTDTPMRPIIHEACMFVEGIHTMKREQDWESCMLQKEEYS NLLEALGNRRAVFIKNHGAILVDDSPIHLVAACIFLRKNAIAFYKSSLIGEPVYIDAE AALRSAKEILLEGVAERIWKYCLQRVRRNMPDLYW" gene complement(3657199..3657813) /locus_tag="Dhaf_3421" /db_xref="GeneID:7260439" CDS complement(3657199..3657813) /locus_tag="Dhaf_3421" /inference="protein motif:PFAM:PF00196" /note="PFAM: regulatory protein LuxR; response regulator receiver; KEGG: nth:Nther_0692 two component transcriptional regulator, LuxR family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_002459875.1" /db_xref="GI:219669440" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7260439" /translation="MIDARIIVVDEKRLFREGLCRMLYQLSWVSSVVGYNTVEEGIKA IHQYEANLYIMNPFVGGEAQYAFVKEIRAHKPGIKIVLLTDFDDADSILDATQQHING YFSKSMAFDKFEVYLHEVMEGKYRLSEALGSLLFERLVKKNSADDLTAREKIIYQMMR KGYTNKEIAKQLSISTNTARNHVSSIMHKLNISSRYRIPESQED" gene complement(3658060..3658509) /locus_tag="Dhaf_3422" /db_xref="GeneID:7260440" CDS complement(3658060..3658509) /locus_tag="Dhaf_3422" /inference="protein motif:TFAM:TIGR02874" /note="TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ; KEGG: mta:Moth_1358 hypothetical protein" /codon_start=1 /transl_table=11 /product="sporulation protein YtfJ" /protein_id="YP_002459876.1" /db_xref="GI:219669441" /db_xref="InterPro:IPR014229" /db_xref="GeneID:7260440" /translation="MGNHPIEALMKSAMESIQAMVDVNTIVGDPVESSDGSVIIPVSR VCCGFAAGGSEFAPPEGDRDEGDKKDQAAAFPFGGGSGAGVSVQPVGFLVVGHGQIRL LPIDHNVVIDRLFDEIPNLMDKISNMVKKDKPSDQVTKEDIIIVGEH" gene complement(3658608..3659258) /locus_tag="Dhaf_3423" /db_xref="GeneID:7260441" CDS complement(3658608..3659258) /locus_tag="Dhaf_3423" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bay:RBAM_026440 YtfI" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459877.1" /db_xref="GI:219669442" /db_xref="GeneID:7260441" /translation="MVQILALLVAMFIWLMMILWIKASLDFRYSRIEENDDLEIHLSA LGGFWKFRLSIPTIKLEWEEGPKIAAEQEAQAPTGETRKAVQQLKMRYFKKSFFYELF PNIPSLLIAFTRLKKKFYRGIHCTEYDWKIEYGHENPAVTALVSGSFWAMLGYSMGRM YNQVTMDVQEPRIMVVPQFKKPGFRCDIQSSFNLRIGHILLVGAELARLIWRRIRK" gene complement(3659398..3659988) /locus_tag="Dhaf_3424" /db_xref="GeneID:7260442" CDS complement(3659398..3659988) /locus_tag="Dhaf_3424" /inference="protein motif:TFAM:TIGR00281" /note="TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: drm:Dred_1135 putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="chromosome segregation and condensation protein, ScpB" /protein_id="YP_002459878.1" /db_xref="GI:219669443" /db_xref="InterPro:IPR005234" /db_xref="GeneID:7260442" /translation="MLFREREIAGVEALLFVADKPLTKERLAEILQLSSEDIAEILYD LKQRYAAPASGVTLIEVNEGYKLGTKPEMSAYIETLYHQPAQGLSGAALEVLAIIAYK QPVTRGEVDFIRGVQSDRSLGTLVEKGLVKDVGRKEGPGRPILYGTTEQFLIHFGLKS LEELPDLNFESMQEAALAEELSMGAGEFGQDNEDCE" gene complement(3659992..3660777) /locus_tag="Dhaf_3425" /db_xref="GeneID:7260443" CDS complement(3659992..3660777) /locus_tag="Dhaf_3425" /inference="protein motif:PFAM:PF02616" /note="PFAM: chromosome segregation and condensation protein ScpA; KEGG: drm:Dred_1134 chromosome segregation and condensation protein ScpA" /codon_start=1 /transl_table=11 /product="chromosome segregation and condensation protein ScpA" /protein_id="YP_002459879.1" /db_xref="GI:219669444" /db_xref="InterPro:IPR003768" /db_xref="GeneID:7260443" /translation="MSNGSSVSHSANTAPYVELPAFQGPMDLLLHLIQQEKVDIYDIP IARITDQFIQVVRQMEDLDMEVTTEFLVLAAQLLQIKSRYLLPKPVKDVTVEEEGDPR QELVERLLAYRAFKQAAETLGEIQISSGQRYFREVDVDGLRSQFTPADPLAGIHFEAL WHAFQRIIERAEQGEEIRTVEPDEIPIEVMVNDVLRRVILHPRGLRFSQLIRGTKRME IIVSFLALLELLKSGKVHCEQSSQNEEIFVFPTEKAWEFTEGE" gene complement(3660774..3661754) /locus_tag="Dhaf_3426" /db_xref="GeneID:7260444" CDS complement(3660774..3661754) /locus_tag="Dhaf_3426" /EC_number="6.1.1.2" /inference="protein motif:TFAM:TIGR00233" /note="catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="tryptophanyl-tRNA synthetase" /protein_id="YP_002459880.1" /db_xref="GI:219669445" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002306" /db_xref="GeneID:7260444" /translation="MKGRIFSGMRPTGSLHIGHLSVIQNWAALQSEYQSYYGIVDQHA LTTGYEDGLDFGVLIREIALDWLSVGIDPEQSAIFVQSHIKEHAELHLLLSMITPLSW LERVPTYKDQMQQLGKEGGKDISTYGFLGYPLLMAADILVYKADTVPVGEDQIPHVEL CREIARRFNHLYGPVFPEPKALIGKVPLLPGVDGRKMSKSYNNTISLTASTAEIKERV QQMVTDPARLRKDDPGHPEVCIVYKFHEVYTPEVAEVEENCRGGKIGCVACKRHLAEN LDKLLSPFRERRALWEEPGKVERVLEQGAEQARQVTQETMKEVRHVMGLR" gene complement(3661793..3662437) /locus_tag="Dhaf_3427" /db_xref="GeneID:7260445" CDS complement(3661793..3662437) /locus_tag="Dhaf_3427" /inference="protein motif:PFAM:PF02163" /note="PFAM: peptidase M50; KEGG: hmo:HM1_1882 peptidase M50" /codon_start=1 /transl_table=11 /product="peptidase M50" /protein_id="YP_002459881.1" /db_xref="GI:219669446" /db_xref="InterPro:IPR008915" /db_xref="GeneID:7260445" /translation="MFNLTTIIANIPALLVGFAFHEYAHAWVADRLGDPTPRSQGRLT LNPFVHLDIFGTLMAVLYSFGWAKPVMTQPHYFKGNKERGRVLVSVAGPLANLLVAFI AMMLWVLTLAFLEDSSWTGTLSTIFMSLVIMNLGLGVFNILPIPPLDGFSILRGVVPG RYSKVLDTLETYGMFILVIILFTNFLGVILQPAVSGLYAFYRDTALFLLSPFIG" sig_peptide complement(3661793..3661873) /locus_tag="Dhaf_3427" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.948) with cleavage site probability 0.886 at residue 27" gene complement(3662425..3665046) /locus_tag="Dhaf_3428" /db_xref="GeneID:7260446" CDS complement(3662425..3665046) /locus_tag="Dhaf_3428" /inference="protein motif:PFAM:PF01743" /note="PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: drm:Dred_1131 polynucleotide adenylyltransferase region" /codon_start=1 /transl_table=11 /product="Polynucleotide adenylyltransferase region" /protein_id="YP_002459882.1" /db_xref="GI:219669447" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR001667" /db_xref="InterPro:IPR002646" /db_xref="InterPro:IPR003156" /db_xref="GeneID:7260446" /translation="MIVILTHRQMDFDALASMVAAQKIFPDSLMVVDGKSNPYVQDFI ALARDRLPFSRPKDVDWAKVEKIVLVDTHNLQRAAGIKEGVFEQIPLVIYDHHPYDGF LTEEMHIESIGSCTTLLIEELRKMAVQLSPFEATLLALGIYDDTGSLLFESTTVRDVK AVAYLLEQGANLGVVAEYLRKPLIEEQKELLQQLLDNGKTEDFRGQPVYISWAESDDY VGGLALLAHRVGEMEGAETLFLVVQMENRVYLVGRSRGRGIEVNRITQAFGGAGHTRA ASATVKHASVAEILKQLKGELAQQAHRINRVRDIMSYPVKTVSPEMKLSEVEQILLKY GHTGVPVAQGEKLVGIISRRDVDKAIKHGLAHAPVKGFMTKDVVVVEADSSWEDVQRT MVQHDIGRVPVLEEGKLAGIVSRSDILRIIHGSAVPTEMSLTRHRSLAMREDILGLLE ELPEQIRSLLAAAQQVADELGYSVFVVGGFVRDILLKVPTQDLDFVIEGDGHAFARAL AQRLQDVQVVFHDQFGTARLDFADGSHLDVASSRREDYSSPGALPQVEESRLRDDMFR RDFTINAMAIAVNSVRYGELVDYYGGLRDLKQGEIRFLHNLSFIEDPTRILRALRFAG RYGFRLAKETREGLYTALDAGVLQKLSIERFTEEFMHMLSELKFGVMGESLLDMGVFR KWFGAELPWDFTHPGLNQAISPERKWLICLRRMDRSQFERIEEKLRLARELKGIAYKF FDIMDGLLSLGVGEKGSEASPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLE AYTEAVKAIHQTVDGTALRQWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVLGL LKDGLSNRPKGETTCST" gene complement(3665185..3665526) /locus_tag="Dhaf_3429" /db_xref="GeneID:7260447" CDS complement(3665185..3665526) /locus_tag="Dhaf_3429" /inference="similar to AA sequence:KEGG:Dred_0444" /note="KEGG: drm:Dred_0444 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459883.1" /db_xref="GI:219669448" /db_xref="GeneID:7260447" /translation="MDKLFEKLKEYLHMDDEIPFDEFSQYYKSLIECLNTTFEEMDQD TRIKGRYACSIVQANAESREKREKKNAKAFKKISAKTAFWMNAINYRLLKEGLTQAEI DQAMEAINDSI" gene complement(3665638..3666957) /locus_tag="Dhaf_3430" /db_xref="GeneID:7260448" CDS complement(3665638..3666957) /locus_tag="Dhaf_3430" /inference="protein motif:TFAM:TIGR00350" /note="TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: hmo:HM1_2540 cell envelope-related transcriptional attenuator, putative" /codon_start=1 /transl_table=11 /product="cell envelope-related transcriptional attenuator" /protein_id="YP_002459884.1" /db_xref="GI:219669449" /db_xref="InterPro:IPR004474" /db_xref="GeneID:7260448" /translation="MDKKNLKNRLIHFIHTYGFNAVLGFGLGIVIVFAVVLFSGRQDL FGQEARSRNMLQTTSQEENIAQNQDSSGPGAAGDLKNTADEALPENTLSDEISSELSL KDRVTVLLIGMDNRPGEALSNTDTLMVASLDQKSKKMVLLSVPRDTQVILNQKKEKVN AIARLQKGPISTQQYLQELLGTPIDGYVLTNFQGFKNIVDGLGGITIDVEKDMYYDTG EAQDRFINLKKGVQRLNGTQALQYARFRNDELADITRTSRQQEVIKAIVAEATTPRNI PKLPIIIPKVYQAIDTNLNLGQIWALAMAFKNKDTYEVINQTLPGQFSDEEGISYWKV NPKETKVILNQLFQGKTSPIFETIQKVHVPAQPPASKEAKPESETDDVKEKAQDEDQG SITVEVLTTEVKESETQPQTTKEKPQVPSKGKGSQPQDGEITFEVLD" sig_peptide complement(3665638..3665757) /locus_tag="Dhaf_3430" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.713) with cleavage site probability 0.364 at residue 40" gene 3667164..3667271 /locus_tag="Dhaf_3431" /db_xref="GeneID:7260449" CDS 3667164..3667271 /locus_tag="Dhaf_3431" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459885.1" /db_xref="GI:219669450" /db_xref="GeneID:7260449" /translation="METGRFQPAIENKCESSAFEERFGGVSFGAEGFEH" gene 3667550..3667933 /locus_tag="Dhaf_3432" /db_xref="GeneID:7260450" CDS 3667550..3667933 /locus_tag="Dhaf_3432" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: GK15244 gene product from transcript GK15244-RA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459886.1" /db_xref="GI:219669451" /db_xref="GeneID:7260450" /translation="MNSSLFGARGSYDYSGNCYPSSPYPYGHQGVYSTYSNPYPQYTY PQYTYPYGHAHPAYEHHSLPSYPYPLITPAQPPVQPPALVYPNTLTYGWGEPRIIIPD RGLETILIAILILVALDLLFVRPRR" gene complement(3667910..3668944) /locus_tag="Dhaf_3433" /db_xref="GeneID:7260451" CDS complement(3667910..3668944) /locus_tag="Dhaf_3433" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1370 CoA enzyme activase" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002459887.1" /db_xref="GI:219669452" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7260451" /translation="MPVSKYFLGVDVGSVSTNIVLLYEDGTIAQTMYLRTQGRPMQTI QEGMRELRACIGSAAEIKGVGTTGSARQLAATLLGADVVKNEITAHAVAASRMNAKVQ TILEIGGQDSKIIILRNGVVVDFAMNTVCAAGTGSFLDQQASRLGIPIEEFGVLALKA QHPVRIAGRCSVFAESDMIHKQQLGHPLPDIIAGLCQAMVRNYLNNVGKNKEILGPVF FQGGVAANPGIRQAFEEELGQEVIVPEHFSVMGALGAAFLAQERFLNKKSPTTNFRGL KMAESHFKARSFDCKGCSNHCEVVEIRQEDKVLTRWGDRCGKWSVADVEPIEIAEVRD QQNLASGSHK" gene complement(3668931..3670070) /locus_tag="Dhaf_3434" /db_xref="GeneID:7260452" CDS complement(3668931..3670070) /locus_tag="Dhaf_3434" /inference="similar to AA sequence:KEGG:PTH_1233" /note="KEGG: pth:PTH_1233 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459888.1" /db_xref="GI:219669453" /db_xref="GeneID:7260452" /translation="MKVTFPHMGNAWIVIQALLENLAVDYVVPPPNSKETLNIGTQLA PESFCLPLKLNLGNFVQAAAQGADTALITGGIGPCRFGYYGEMEREILQEAGYPFDVI TLEPPDGSLLGLTERIRKLAGAKNTWNRILKAMLFAYRKSVVLDQIEDRFHGFRPLVK DAKLADHLYEEAKGRLVQAMTDQGMKDVLQWLKEEMEQKLGNSAGYEGEELLKIAVVG EIYTLLEPFISMDVEKELGNLGAVVDRSIYLSGWVGQHVFRGLAQGYRPLKSYYSLAK PYLGHFVGGHAQETIGAAIKFAQEGYDGVVQLLPLGCMPEIVASSILPKVQEDYGIPI MTLTVDEHTGKAGVQTRIEAFVDLLERSRLKRRVNNEGVLDLAGK" gene complement(3670012..3671118) /locus_tag="Dhaf_3435" /db_xref="GeneID:7260453" CDS complement(3670012..3671118) /locus_tag="Dhaf_3435" /inference="similar to AA sequence:KEGG:Amet_1169" /note="KEGG: amt:Amet_1169 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459889.1" /db_xref="GI:219669454" /db_xref="GeneID:7260453" /translation="MRLGFPRALMYYEYYPFWAGFFYKLGIELVTSPLTNREIMESGL KKAPDETCLPVKILVGHLTVLSDVDGIFLPRLVSMEKNTYLCPKILGLPESVLYALPA GVQLYTVDINWREGKREVLKQLMAFGGTLRATKGRIREAFAEAQRWQKAYQRMRHSGW SFTESMQCFEALAEPMKLKDLGFKQVGRRQKPEDFEDGWLLDQAVRSGCREKGPKIAL VGHSYLTYESYANMNLLQRLREKAQVVVVENIGPSPVEEQHSKLQKKIFWSHAKKIFG AGAVYVEDPEIEGLIYLSCFGCGTDSMTNDLLARRARQNQKPYLVLTLDEHSGEAGVV TRIEAFLDMLERRRDYESHLSSYGERLDRDSSLT" gene complement(3671133..3672626) /locus_tag="Dhaf_3436" /db_xref="GeneID:7260454" CDS complement(3671133..3672626) /locus_tag="Dhaf_3436" /inference="protein motif:PFAM:PF03323" /note="PFAM: GerA spore germination protein; KEGG: pth:PTH_1231 spore germination protein GerA" /codon_start=1 /transl_table=11 /product="GerA spore germination protein" /protein_id="YP_002459890.1" /db_xref="GI:219669455" /db_xref="InterPro:IPR004995" /db_xref="GeneID:7260454" /translation="MDNSSESNVKVSKHYQKNLDYLNRELGVPDNFDIVLREMTIGGK KIAIYSVNGMVDTQVVSIILEALVELERADLVVNTLQTLVKGRIVGLQVSEVDTMDKI LYFILSGPMALFVEGQEKAIIIDARSFPARSPSEPDIERVTRGARDGFTETLAFNTAL IRRRLRDPKLRLKLMQVGRRSKTDVCVAYIEDITNDDLVKEISEEIQKIKIDGIPMAE KSVEEFILGSKIWNPYPRVRYTERPDVAAVHLLEGHVVVLVDTSPSVMIAPATFWSHT QHAEEYRQEPIVGAYLRWVRFMGIFAALFLLPLWLACALNPHLLPEWLQFLGIQEVGK IGLIPQVFLAEFGVDLVRMAAIHTPGPLTVALGLIATFMIGDVAIKVGLFAQEIIVYI AIVTVGTFATPSYELAQANRLARLFLLVMVALNNFIGLAIGVLILFFLLWRTKSFGVP YLWPLLPLDIKALGTVLVRSPLPIKNKRPSILKPKDTIRQPQGHDEK" gene complement(3672689..3673051) /locus_tag="Dhaf_3437" /db_xref="GeneID:7260455" CDS complement(3672689..3673051) /locus_tag="Dhaf_3437" /inference="protein motif:TFAM:TIGR02839" /note="TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: mta:Moth_1374 SpoVA protein" /codon_start=1 /transl_table=11 /product="stage V sporulation protein AE" /protein_id="YP_002459891.1" /db_xref="GI:219669456" /db_xref="InterPro:IPR005562" /db_xref="InterPro:IPR014204" /db_xref="GeneID:7260455" /translation="MFEQIIPAFVVGGLICVVGQLLMDLTKPTFTPAHVLVTFVTGGA VLGALGVYEPLVKFAGAGASVPLSGFGYSLAKGAIEAVGEKGLIGAFSGGVEATAVGI AAAVFFGYLVSVTFNPKG" gene complement(3673068..3674072) /locus_tag="Dhaf_3438" /db_xref="GeneID:7260456" CDS complement(3673068..3674072) /locus_tag="Dhaf_3438" /inference="protein motif:TFAM:TIGR02845" /note="TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: mta:Moth_1375 stage V sporulation protein AD" /codon_start=1 /transl_table=11 /product="stage V sporulation protein AD" /protein_id="YP_002459892.1" /db_xref="GI:219669457" /db_xref="InterPro:IPR001261" /db_xref="InterPro:IPR010894" /db_xref="GeneID:7260456" /translation="MNLKRIGNQTVVFSNPSVILSSYSVVGPMEGQGPLGKTFNKVWQ DNINGNTSWEVAETKMLEEAMEGAVKQSQIKKDEIDYLLAGDLLNQIISANFAARTMG IPFIGLYGACSTMALSMSVGTMLIDGGFARKVLVGVSSHHDTAERQYRLPTEQGGQRA MSAQWTVTGAGSLVLGQSGEGPRITAATIGRIVDFGETDANNMGAAMAPAVADTVINH FQDMNRTPEDYDLIISGDLGSVGLNLTQEVLKKSGLHFQNFSDCGVLIYDKSQDAHAG ASGCGCSAVVFAGHIMEKIKSGQYKRVLLVGSGALHSPTSSLQGESIPGIGHAVVIEA" gene complement(3674122..3674589) /locus_tag="Dhaf_3439" /db_xref="GeneID:7260457" CDS complement(3674122..3674589) /locus_tag="Dhaf_3439" /inference="protein motif:TFAM:TIGR02838" /note="TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC" /codon_start=1 /transl_table=11 /product="stage V sporulation protein AC" /protein_id="YP_002459893.1" /db_xref="GI:219669458" /db_xref="InterPro:IPR005562" /db_xref="InterPro:IPR014203" /db_xref="GeneID:7260457" /translation="MADQKLRPPTLNVTPEEYKELTQSMTPKPTFMKNIIRAFLVGGI ICAFGQIVINFLVQMGLPKDDASTAATAFLILLGALLTGLGIYDEIGRFAGAGSIVPV TGFANSIVSPALEFKREGYVMGVGAKLFTVAGPVLVYGIAASIAIGLITYFLR" gene 3674790..3675137 /locus_tag="Dhaf_3440" /db_xref="GeneID:7260458" CDS 3674790..3675137 /locus_tag="Dhaf_3440" /inference="protein motif:TFAM:TIGR02886" /note="TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bay:RBAM_021580 hypothetical protein" /codon_start=1 /transl_table=11 /product="anti-sigma-factor antagonist" /protein_id="YP_002459894.1" /db_xref="GI:219669459" /db_xref="InterPro:IPR002645" /db_xref="InterPro:IPR003658" /db_xref="InterPro:IPR014237" /db_xref="GeneID:7260458" /translation="MLIDKKLERQTLLLTLKGELDMNTSESLRQTIDSEIERRGVRTV ILNLEDISFIDSSGLGVILGRYKKLLPMGGKVIITRVPPHIYKIMELSGLPRIIQFED ILNQEDGRKGKTV" gene 3675134..3675571 /locus_tag="Dhaf_3441" /db_xref="GeneID:7260459" CDS 3675134..3675571 /locus_tag="Dhaf_3441" /EC_number="2.7.11.1" /inference="protein motif:TFAM:TIGR01925" /note="binds to sigma F preventing its association with RNA polymerase during sporulation" /codon_start=1 /transl_table=11 /product="anti-sigma F factor" /protein_id="YP_002459895.1" /db_xref="GI:219669460" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR010194" /db_xref="GeneID:7260459" /translation="MKRNLLDLKFSSLGENVGIARMLIASVGAQLDLSLNDIEELKVV VSEAVSNAIIHGYANHPDKLVQLIIEQNPEALKIIVKDEGCGIPDVEQAMQPAFSTDP ERMGLGFVFMQSFMDDLQVESAVNQGTTVTMIKQLDNIQPSTH" gene 3675582..3676367 /locus_tag="Dhaf_3442" /db_xref="GeneID:7260460" CDS 3675582..3676367 /locus_tag="Dhaf_3442" /inference="protein motif:TFAM:TIGR02885" /note="TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mta:Moth_1496 sigma 28 (flagella/sporulation)" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 28 subunit, SigF" /protein_id="YP_002459896.1" /db_xref="GI:219669461" /db_xref="InterPro:IPR000943" /db_xref="InterPro:IPR007624" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014236" /db_xref="InterPro:IPR014284" /db_xref="InterPro:IPR014322" /db_xref="GeneID:7260460" /translation="MMIQRLTEMNLPRFPLLSDEEMMDLLHRAQNGDAEARERLINCN LKLIFNLVQRFSHRGYELEDLFQIGTIGLIKAIDKFDFTYGVKFSTYAVPMIIGEIRR FLRDDHPVKVPRSYKELVYKVNKARESLSATLGRDPTIGEIAESIGVDREDIVSALEA VQSPTSIHDTLYQDDSDPIYILDQLPMEKDLEAGWFEKIALKEVLDKLPEREKRVLMM RFYEDKTQSEIAALLNLSQVQISRIERAALHRIRQYLHEPEHD" gene complement(3676364..3677506) /locus_tag="Dhaf_3443" /db_xref="GeneID:7260461" CDS complement(3676364..3677506) /locus_tag="Dhaf_3443" /EC_number="3.4.16.4" /inference="protein motif:PRIAM:3.4.16.4" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: swo:Swol_0612 serine-type D-Ala-D-Ala carboxypeptidase" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_002459897.1" /db_xref="GI:219669462" /db_xref="InterPro:IPR001967" /db_xref="InterPro:IPR012907" /db_xref="GeneID:7260461" /translation="MRKTLSWVFALALFIGNLAVPHQAYGAVLETEAASAILMDAKSG QILFEKEIHKELPPASVTKLMTLLVAAEAVESGRVSLTDKVTASEGASSLGGSQIYLE PGETFSLEEMLISIAVGSANDACYAVGEHISGTHEAFVEEMNKKAKEIGANHTHFVNA YGLPAQGHYTSAYDLALMGREALKYPLVRKLTNMKEYDLRGGKFKLWNTNKLLWWYEG ADGFKTGWTSEANYCLASTVERDGLRLIAVVMGVPQVRGHFTESMKLYNYGFANYAYK EYAPVGQKQGVIKVRKGMEEDLVAVTEKALGVTVPKGSDKNIWAETKLNPDVEAPVKA GQKVGEILLYRDNELMASVNLVAEKDIEKAGIGKQILRTFEGVFGF" sig_peptide complement(3676364..3676444) /locus_tag="Dhaf_3443" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.995 at residue 27" gene complement(3677720..3678196) /locus_tag="Dhaf_3444" /db_xref="GeneID:7260462" CDS complement(3677720..3678196) /locus_tag="Dhaf_3444" /inference="protein motif:COG:COG1832" /note="KEGG: tvo:TVN0743 CoA-binding protein" /codon_start=1 /transl_table=11 /product="CoA-binding protein-like protein" /protein_id="YP_002459898.1" /db_xref="GI:219669463" /db_xref="GeneID:7260462" /translation="MREKKVFSLAGETTTAHRYAVVGNADRFLKHKHAYKVWRTLKQF GCVVHPVAEDLQRLEGFKVYAGLAALQDKVDVVVPCLKSESIPNIISQAQECGAQFVW FQEHNWTEEFQEQADAAGIQVIQGCLLKHKIYPKPFAYLHPCYWHGLKSPKAPKRR" gene 3678439..3678744 /locus_tag="Dhaf_3445" /db_xref="GeneID:7260463" CDS 3678439..3678744 /locus_tag="Dhaf_3445" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: hmo:HM1_2851 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_002459899.1" /db_xref="GI:219669464" /db_xref="InterPro:IPR007337" /db_xref="GeneID:7260463" /translation="MARTSNIFARVEPEVKEQAEQVLEQLGIPMSSAVSMFLKQVVLQ RGIPFEMKLPKDTPPSYSSLTKEQFNAEIEKGMLDIEAGRTYPMKSVEEEMKRDYGL" gene 3678741..3679064 /locus_tag="Dhaf_3446" /db_xref="GeneID:7260464" CDS 3678741..3679064 /locus_tag="Dhaf_3446" /inference="protein motif:PFAM:PF05016" /note="PFAM: plasmid stabilization system; KEGG: swo:Swol_0151 hypothetical protein" /codon_start=1 /transl_table=11 /product="plasmid stabilization system" /protein_id="YP_002459900.1" /db_xref="GI:219669465" /db_xref="InterPro:IPR007712" /db_xref="GeneID:7260464" /translation="MSWTVVYSAQAKQDLRNIFEYIAHSLCSPDAAKSQTRRIMAEIH SLDEMPLRYRIYDDEPWRSQGLRFFPVDYYLVFYLPVASANTVKIVRIMYGGRDVKKH LEEEL" gene complement(3679161..3680453) /locus_tag="Dhaf_3447" /db_xref="GeneID:7260465" CDS complement(3679161..3680453) /locus_tag="Dhaf_3447" /EC_number="2.4.2.2" /inference="protein motif:TFAM:TIGR02644" /note="KEGG: cth:Cthe_0678 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like" /codon_start=1 /transl_table=11 /product="pyrimidine-nucleoside phosphorylase" /protein_id="YP_002459901.1" /db_xref="GI:219669466" /db_xref="InterPro:IPR000053" /db_xref="InterPro:IPR000312" /db_xref="InterPro:IPR013102" /db_xref="InterPro:IPR017459" /db_xref="InterPro:IPR017872" /db_xref="GeneID:7260465" /translation="MRVVDIINKKKKGEALTKEEIEFFVQGYVKGEIPDYQIAALYMA IYFQGMNDEEIADLTMAYVNSGETIDLSGIPGVKVDKHSTGGVGDKISLIVIPLVASL GIPVAKMSGRGLGHTGGTIDKLEAIQGFRTALSTGEFIANVNNHGMAVVGQTANLTPA DKLTYALRDVTGTVDSIPLIAGSIMSKKIASGADAIVLDVKVGSGAFMKSLPEAKKLA ECMVQIGKSLKRRTIAIITDMNQPLGHEVGNANEIKEIIDVLKGKGAEDETRIALTIA SYMAIASGNYHDFQSTYAELQQVIASGKAVEKLKELISIQGGNPQIVHEPSQLPQAKH HIEVLANHAGYISSIDAEQIGLVAMLLGAGRKKKDDPIDYAAGVTLLKKVGDYVDLDE PLCILHTNLEYVEADVLKAYGFQESKPDPIEYIHEVVK" gene complement(3680530..3681363) /locus_tag="Dhaf_3448" /db_xref="GeneID:7260466" CDS complement(3680530..3681363) /locus_tag="Dhaf_3448" /inference="protein motif:TFAM:TIGR01700" /note="TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; KEGG: cno:NT01CX_1498 purine nucleoside phosphorylase" /codon_start=1 /transl_table=11 /product="purine nucleoside phosphorylase I, inosine and guanosine-specific" /protein_id="YP_002459902.1" /db_xref="GI:219669467" /db_xref="InterPro:IPR000845" /db_xref="InterPro:IPR001369" /db_xref="InterPro:IPR011268" /db_xref="InterPro:IPR011270" /db_xref="GeneID:7260466" /translation="MMREQEFMDKLSETRRFIIEKVNIEPQMGVILGSGLGGFVDLIE DKVVIPYQEIPNFPVSTVEGHKGQLVFGKVLGKTVVAMQGRFHFYEGYSMQSVTFPVR VMQVLGVSGLIVTNAAGGINPAYRPGDLILIKDHINMMGDNPLRGANLSNLGPRFPDL SEGYDLEWRQKALTIAREVGIHPQEGVYAAMSGPSYESPAEIRFLRTIGADLVGMSTV PEVIIANHGGMRVLGISCVTNMAAGILAQRLSHAEVMETAERIEKQFVRFVQALVKGL A" gene complement(3682241..3683407) /locus_tag="Dhaf_3449" /db_xref="GeneID:7260467" CDS complement(3682241..3683407) /locus_tag="Dhaf_3449" /EC_number="5.4.2.7" /inference="protein motif:TFAM:TIGR01696" /note="catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose" /codon_start=1 /transl_table=11 /product="phosphopentomutase" /protein_id="YP_002459903.1" /db_xref="GI:219669468" /db_xref="InterPro:IPR006124" /db_xref="InterPro:IPR010045" /db_xref="InterPro:IPR013553" /db_xref="GeneID:7260467" /translation="MKRAILIVLDSVGIGEMPDAHEYGDVGSNTIGNIAKARGGLHLP HLQRLGLGNIAPIQGVDPEASPQGCYGKMAERSPGKDTTTGHWEIAGVVLERAFPTFS KGFPEDFLQAFAERIGRQVIGNEVASGTEIIQRLGQEHVRTGKPIAYTSADSVFQIAA HEEVIPLEELYRICGIAREMLEGDLRVGRVIARPFLGEEGNFYRTTNRHDYAIEPPHK ILLDMVKEKGLRVMAVGKIKDIYAGHGVTDHLASKGNRDGVEKTLAFIREKKPGLIMT NLVDFDMLYGHRNDVENYAQALEEFDGRLPEILASLEEEDILFITADHGCDPTTESTD HSREYVPLLVYGKKVVPGRNLGIRSSFADLGATIAEYLGTEELVNGRSFLGELI" gene complement(3683502..3684470) /locus_tag="Dhaf_3450" /db_xref="GeneID:7260468" CDS complement(3683502..3684470) /locus_tag="Dhaf_3450" /inference="protein motif:TFAM:TIGR02225" /note="TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pth:PTH_1210 site-specific recombinase XerD" /codon_start=1 /transl_table=11 /product="tyrosine recombinase XerD" /protein_id="YP_002459904.1" /db_xref="GI:219669469" /db_xref="InterPro:IPR002104" /db_xref="InterPro:IPR004107" /db_xref="InterPro:IPR011932" /db_xref="GeneID:7260468" /translation="MEVQTEAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQR GKNIIACEGNDLFLFLLQEKNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLS TPKLEQHLPHVLSEGSISKLMGEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNM AMIEVLYGCGLRVSELVGLKVSDIIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLE HDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKWAQTHGVQENIYPHKFRHSFATH LLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHPRAD" gene complement(3684543..3684773) /locus_tag="Dhaf_3451" /db_xref="GeneID:7260469" CDS complement(3684543..3684773) /locus_tag="Dhaf_3451" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459905.1" /db_xref="GI:219669470" /db_xref="GeneID:7260469" /translation="MQRGKSWPEFLFTIARIVILMMLLAVMLPKLVTVCSLLLTSQED KDEKPSGNPMRVEEEGTVWSEFVIQLFPDIKR" gene complement(3684799..3685584) /locus_tag="Dhaf_3452" /db_xref="GeneID:7260470" CDS complement(3684799..3685584) /locus_tag="Dhaf_3452" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: chy:CHY_0848 (R)-2-hydroxyglutaryl-CoA dehydratase activator" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002459906.1" /db_xref="GI:219669471" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7260470" /translation="MAKIYIGVDIGSLTVKVVLIDQETEMIAYDTARAGYSGREVAVQ MVAKLLAESGLSREDVGGTVATGYGRITFPADREVSEITCQARGIHHLFPTARTVIDI GGQDSKVIQMLPNGKVVDFAMNDKCAAGTGRFLEVMASALEISLNDIGNLAETSRNPT AISSFCTVFAESEVITHVSAGKPKEDILAGVCASVASRVASLAQRIGLVPDIVFTGGV ARNQGVLAALRRQLSHPLLVYSEPSITAAWGAALMASRQSPSA" gene complement(3685610..3686839) /locus_tag="Dhaf_3453" /db_xref="GeneID:7260471" CDS complement(3685610..3686839) /locus_tag="Dhaf_3453" /inference="protein motif:PFAM:PF06050" /note="PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: chy:CHY_0847 (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_002459907.1" /db_xref="GI:219669472" /db_xref="InterPro:IPR010327" /db_xref="GeneID:7260471" /translation="MTQETQQRNYRPLRSTDTLKKTMKRYYILTGYHRYWGKPLGRKI AWVTSGAPVEILRAFKIHPAYPEQYAAIYSTNKATARLCQVAEAAGYSQDLCSYARSN IGGVLRPDLAPLGGMPKPDLLVACNNICGTVLKWYEVLARHFKVPLLVLDTPYLTGEM TEQARNYVLEQLKAMVVELEKITGRTLDEKELEKQMEFSRETTGLWKEARQACQSRPS PLNAPDLFIHMAPIVVMRGTKGGRDYYRLFRDEVKGREALAQGAVENERIRLVWDNIA IWPKVFSFNKMFTERGACFVTDTYSGGWAMEQAPGTPLESLAATYTEVFLNRSPEFRT KQLVQLIRDYQADGFVMHSNRSCKPYSLVQEVIRRRVMMETGVPGLMIEADMADPRAY AEEPIRNRVQAFLETFD" gene complement(3686836..3687996) /locus_tag="Dhaf_3454" /db_xref="GeneID:7260472" CDS complement(3686836..3687996) /locus_tag="Dhaf_3454" /inference="protein motif:PFAM:PF06050" /note="PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: chy:CHY_0846 (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_002459908.1" /db_xref="GI:219669473" /db_xref="InterPro:IPR010327" /db_xref="GeneID:7260472" /translation="MMEWSVPEEQRDSLSLLLEESALKGLKRKTRYPNYRFLGILCSY FPEELIMAFGLEPLRLLPDSAQRTPGELPPFSCSLARGILDMELQGRWEDLLGVGFVH TCDTMQCLSGIWEFAGQQNIVNMVPPVMLKAAGANQYYQEEVKRAWEQLQKLTGHEPT EESLREAIRLCRRIREKVNEVEELREKLPSPLTAALLRAGQLMPRAIYAEALDEVLPE LYARAEESGSRARLMVSGAALENDQVYAMIEELEGRVVVDDTCTGYRHYSGPLMEESA DPWYDLVKRYEDMPPCPCKNQSLNARLEYLGNLASRRQVEGAVLVIRKYCEPHAWDAV PLAETLQNRGIRTLVLELEGAEAGGQERTRLQAFLESILENRSSDSGGRAQA" gene complement(3688019..3689770) /locus_tag="Dhaf_3455" /db_xref="GeneID:7260473" CDS complement(3688019..3689770) /locus_tag="Dhaf_3455" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0845 long-chain-fatty-acid--CoA ligase" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_002459909.1" /db_xref="GI:219669474" /db_xref="InterPro:IPR000873" /db_xref="GeneID:7260473" /translation="MSQENKRHEFPWRAQYDQQVPHYLSYPEETVDGLFRKSVQKNSG EVALIYFNKKMSYSDLGNKVERLAGSLQKLGIDPGDRVALLLANCPQYVIAYYAILAI GGVVVPVNPLSTESELLHIFRDAQVKAAICLDLLAERLENVRDICHQAGETQLLKHTF YTALNEYMPFPLKFLYPFTRKLSPGGKERLKVAGRFKDLLNEGNGPVLKDYPSQKVDV RKDIAVLIYTGGTTGRPKGVMLSHYGLLANAYQAIAWVQMGSKDRLVTVLPAFHGFGM SVCMNAPLFSGASTILIPRFEAKDVLKAIHKHKPTYFAGVPTMYIGMINYPQLKRYSL SSLVGCFVGAAALAPEVKRSFEELTGARLMEGYGLTEGVNALCCNPLRGENRTGSIGF PFPDVDFKIRDIDTGEEELPPGESGELVIQCPDLMLGYYNRPEETAYALRDGWLYTGD IATMDEDGYFYLVDRKKDMIITGGFNVYPREVEDVLYEHPAVREACVIGVKDGYSGEK VVAFVSLKDGAAATEQDVIAFCRKHLVPYKVPKTVEFRTDLPKTAIGKILRRALRDTP PAEGEAKQSAKEAAATK" gene complement(3689915..3691153) /locus_tag="Dhaf_3456" /db_xref="GeneID:7260474" CDS complement(3689915..3691153) /locus_tag="Dhaf_3456" /inference="protein motif:PFAM:PF00441" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dol:Dole_1860 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_002459910.1" /db_xref="GI:219669475" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7260474" /translation="MFDFLLTSEQKLLQEEAARFVKEKVPKQLILAMDEEKVIYPKEY LMDLGQARLLGLRFAERYSGRGLQWVDEVSVLEEIGVLGTSLACLYSLPSIVGEAINH FGSEVLKDRYLKPTLEGKLYTAEALTEPRGGSDFFGATTLARREGDVYILNGQKRFVV GAEGADYFMVYAKTDPEGPAHQSISAFIVDRGPGVEVEHIYGLMGTRGGGAGRVVFKD VKVPAENLLGVENGAADIFYQMMIPERLTSAAGALGMARAALEVASDYSTRRKAFGRK IKDFQGVNFKVADSITRLDAARSLVYTTARAVDSGVPGHVARRLVSEAKKFATDSAWA VVNDGMQIMGGIGYTNVFPIERLLRDIRLIMIWTGTNEVMNLIIQHEYYKERRGNLQF HRSLEEDAVNAHLTEEKVYE" gene complement(3691340..3691720) /locus_tag="Dhaf_3457" /db_xref="GeneID:7260475" CDS complement(3691340..3691720) /locus_tag="Dhaf_3457" /inference="protein motif:PFAM:PF01325" /note="PFAM: iron dependent repressor; KEGG: cth:Cthe_0620 DtxR family iron dependent repressor" /codon_start=1 /transl_table=11 /product="iron (metal) dependent repressor, DtxR family" /protein_id="YP_002459911.1" /db_xref="GI:219669476" /db_xref="InterPro:IPR001367" /db_xref="GeneID:7260475" /translation="MSIQESGEMYLETIYILQKKKGDIRSIDIAHELGYTKPSISRAV GILKKNDYIEVDSSGVITLTDEGEKIASRIYERHDILTRYLVYLGVDEETAAQDACRV EHVISQDSFEKMKEEYHRRMKEQS" gene complement(3691907..3692083) /locus_tag="Dhaf_3458" /db_xref="GeneID:7260476" CDS complement(3691907..3692083) /locus_tag="Dhaf_3458" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459912.1" /db_xref="GI:219669477" /db_xref="GeneID:7260476" /translation="MLEWISSNGVNLIIGAVLLAVIALAGRNVYKTRKSGGCSGCSSS CGCGSGGCESNKVE" gene complement(3692128..3694275) /locus_tag="Dhaf_3459" /db_xref="GeneID:7260477" CDS complement(3692128..3694275) /locus_tag="Dhaf_3459" /inference="protein motif:TFAM:TIGR00437" /note="TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cpy:Cphy_1194 ferrous iron transport protein B" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="YP_002459913.1" /db_xref="GI:219669478" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR003373" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR011619" /db_xref="InterPro:IPR011640" /db_xref="InterPro:IPR011642" /db_xref="GeneID:7260477" /translation="MPLKIALAGNPNSGKTTLFNALTGSNQTVGNWPGVTVEKKEGKL KGHKDVTIVDLPGIYSLSPYTLEEVVSRNYLIGEKPDAIINIIDGSNLERNLYLTTQL TEIGIPVIIAINMMDIVNKNGDKINIEKLSKSLGCEIMEISALKRMGISELADKAVKT AQNAQSRPAKLAFQPEIEEALKAISSKLPGGIAEEQKRWYAIKFFERDEKILEQMTAV NVEEVIVAVEDALDDDSESIITNARYNFITSIIKGSYVKKSSSKITTSDKIDKVVTNR WLALPIFAVIMTLVYYIAITTVGDILTGFTNDTLFGEWISEPLAGWFEEIGAAGWLAG LIVDGIVGGVGAVLGFVPQMLVLFFLLAILEECGYMARIAFIMDRIFRRFGLSGKSFI PMLVGTGCGVPGVMATRTIESDRDRRMTVMTTTFMPCGAKMPIVALIAGAVFGGVWWV APSAYFIGVAAIVISGIILKKTSRFAGDPSPFVMELPAYHMPTAGSVLRSTWERGYSF IKKAGTIILLASIFIWFLSSFGMVEGSFQMVEDMDASVLAAIGGVVAPIFAPLGFGTW QSTVATIMGLVAKEEVVGVFGVLYGVSGDALGLVEEGAFGSLGAIAAHFTALSAYSFL VFNLLCAPCFAAIGAIKGEMNDMKWTWFAIGYQMIFAYAIAFLVFQFGSLFSGAGFTV GTAVAALVFAGLLYLLFRPGRPTPRVSGIPVKG" gene complement(3694339..3694560) /locus_tag="Dhaf_3460" /db_xref="GeneID:7260478" CDS complement(3694339..3694560) /locus_tag="Dhaf_3460" /inference="protein motif:PFAM:PF04023" /note="PFAM: FeoA family protein; KEGG: ckl:CKL_1602 FeoA-related protein" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_002459914.1" /db_xref="GI:219669479" /db_xref="InterPro:IPR007167" /db_xref="GeneID:7260478" /translation="MSTLKDVKVGQTVTVVKLHGQGALKRRIMDMGLTKGTEVFVRKV APLGDPIELNVRGYELSIRKEDAANIEVE" gene complement(3694618..3694836) /locus_tag="Dhaf_3461" /db_xref="GeneID:7260479" CDS complement(3694618..3694836) /locus_tag="Dhaf_3461" /inference="protein motif:PFAM:PF04023" /note="PFAM: FeoA family protein; KEGG: cpy:Cphy_1192 FeoA family protein" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_002459915.1" /db_xref="GI:219669480" /db_xref="InterPro:IPR007167" /db_xref="GeneID:7260479" /translation="MPLAMVAPGEEVKVVSIKGRDNTKRFLENLGFVEGAVISVVTEL AGNVIVAVKDTRVAVNKSMATRILTVKV" gene complement(3695134..3695730) /locus_tag="Dhaf_3462" /db_xref="GeneID:7260480" CDS complement(3695134..3695730) /locus_tag="Dhaf_3462" /inference="protein motif:TFAM:TIGR02831" /note="TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane; KEGG: mta:Moth_1503 hypothetical protein" /codon_start=1 /transl_table=11 /product="stage II sporulation protein M" /protein_id="YP_002459916.1" /db_xref="GI:219669481" /db_xref="InterPro:IPR002798" /db_xref="InterPro:IPR014196" /db_xref="GeneID:7260480" /translation="MRKLGEHIRQYWVIYLALVSVYLAGVIFGAVGVGALNTGETQEL SGFLDKLLAGQPTTLDTNFLIQLAREQFIIMAGIWLLGLTVIGTPLIFLIVFTRGFVF GFTLSFIIGMKGLWGLGLVLISILIPALAGIPFLLLGAGLATIFSMMLLKGKQVGESL RREFMYYSVATVLVSLGAVFVGVSQGYFSILGVRFFNL" gene complement(3695822..3696985) /locus_tag="Dhaf_3463" /db_xref="GeneID:7260481" CDS complement(3695822..3696985) /locus_tag="Dhaf_3463" /inference="similar to AA sequence:KEGG:Cthe_0355" /note="KEGG: cth:Cthe_0355 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459917.1" /db_xref="GI:219669482" /db_xref="GeneID:7260481" /translation="MKHYYTDLHIHIGQSLDGKAVKITAAKTMNLPGVIQVARDIKGL AMIGVIDAQSQGVRKDFRTLLHEGVLQPLEGGGYAAQGLIIIPGTEIELSLGTGSAHF LAYFPTLNHLESYIHKLQPYVKNWQLSSQKAHLGVEQWLEAVAAGEGIWLPAHAFTPH KGIYGNCCESLLDVLPGMPLALEIGLSADRQMARSIRELGQVVLFSNSDAHSLPKIAR EYNLLSLAEGSFLGLQELVYKVKGEVLANYGLPPVFGKYHRTYCLVCEKVVEGEPPLL ECPACGSRQVVMGVLDRLVSIADAEIPPEPDPRYIYQLPLKDLPGIGPKMVRNLLQHF GTEMNVLHQVPGEELVKVAGEKAARWIELSRQGKLLFQAGGGGVFGKVVDILS" gene complement(3696982..3697554) /locus_tag="Dhaf_3464" /db_xref="GeneID:7260482" CDS complement(3696982..3697554) /locus_tag="Dhaf_3464" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: tma:TM1181 hypothetical protein" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_002459918.1" /db_xref="GI:219669483" /db_xref="InterPro:IPR000086" /db_xref="GeneID:7260482" /translation="MSDQSSQQRTGAIEDAGLEEKCIEKEIVFAGRMLRMDRDRIRLP NGAEATREVVRHPGAVGILPFKGDELLLVRQYRYPIQQAILEIPAGKLEPGEEPLVCA ERELREETGYRGTLEHLVSIYTTPGFTDEIIHLYKATDLVWDPLQADEDEFLNVVNTP WVQAKEKALSGELNDAKTMLAIILLAGKER" gene complement(3697725..3699797) /locus_tag="Dhaf_3465" /db_xref="GeneID:7260483" CDS complement(3697725..3699797) /locus_tag="Dhaf_3465" /inference="similar to AA sequence:KEGG:PTH_0613" /note="KEGG: pth:PTH_0613 secreted protein" /codon_start=1 /transl_table=11 /product="secreted protein" /protein_id="YP_002459919.1" /db_xref="GI:219669484" /db_xref="GeneID:7260483" /translation="MKGQKMGLALVMACLLTLLGWNAYQTKTIAASGDEKIGAEGPQK VGQEAPVEPLPTVGSFENFKKLMAEAESRTRNVVMYSGGDIAAAESSPQASAASSAGN LLDGKLDYSETNVQVQGVDEADTVKTDGKYIYKLTDNQLIIAKAYPVEEMEVVAALQF DGEVHPLEMYVDDQYLTVILNQNYAWRQVYPAPAPPFENSVKVLIYDLADPSNLKQVR ELELDGSYLSSRKIGDTLYLVNNKYIPLYRLQEQPEALLTPGYRDSLEGGEIQRIGYE EICYFPGSPQPNYLLIAGIDLGNLSTKKTEVKTYLGAGENIYSSLENLYVAVPEYKYE QVQPLPEPADTAGSNTSAMSRMIAVMPAEVNTSVYKFNLQAGDTKYLGMGSVPGNILN QFSMDEHNGYFRIATTLQKLPVRTGEAELTNNLHILDQSMKQAGKIENIAPGEKIYSV RFMGDRGYMVTFKTVDPLFVLDLKDPNHPAVLGELKIPGYSNYLHPYDENHIIGFGKE AIEVEDPHWSGEGTVKNAYYLGMKVALFDVSDVNNPQEKFKVEIGDRGTESELFWNHK ALLFDREKGILSFPVTVCDIDPATVNKDDYLAQKDPRLAYGQPVFQGAFVYDLSAEEG FTLKGMITHHPPGEVVNLQNTGRYDYNRDISRSLYIGDTLYTLSNSYLQANDLNTMEE QGKLEIHN" sig_peptide complement(3697725..3697793) /locus_tag="Dhaf_3465" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.965) with cleavage site probability 0.232 at residue 23" gene complement(3699898..3700263) /locus_tag="Dhaf_3466" /db_xref="GeneID:7260484" CDS complement(3699898..3700263) /locus_tag="Dhaf_3466" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: tex:Teth514_0702 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002459920.1" /db_xref="GI:219669485" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7260484" /translation="MKKSYEIIRGLREDKDLRQRDIAEVIGTTQQHYSRCEQGECDLQ TRAIIKLADFYDVSTDYLLGRTECRQGIDALNQSVVGAYTTGRLLTEVLSLNNIGRHA VIEYIGLQKLKEKVYETRE" gene 3700548..3701402 /locus_tag="Dhaf_3467" /db_xref="GeneID:7260485" CDS 3700548..3701402 /locus_tag="Dhaf_3467" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbe:Cbei_3076 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_002459921.1" /db_xref="GI:219669486" /db_xref="InterPro:IPR000160" /db_xref="GeneID:7260485" /translation="MVFNTLAEALTIIQALESANTSICITDTDHKIIYESAKSGYKLN LSSDHLNKLDTGFYHSANAAFRVLLSDNSLTTITTIPVLIAGRPYSLEFKQLIRQNTY FSLESYHFENLSIHQIKEMAITDSLTKLYNRRYIDERLPIDIQSSFELARPLSILFID IDYFKKINDQNGHAAGDQVLQKLALLLQKQLRRGSGWVARYGGDELLICLPGSGKKVA RSIANRLREAIEHYPFYFKGKAINITCSIGVQTIFKDSGVVNIAELIAMADNNLYQAK NEGRNRVY" gene 3701529..3702791 /locus_tag="Dhaf_3468" /db_xref="GeneID:7260486" CDS 3701529..3702791 /locus_tag="Dhaf_3468" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: UbiE/COQ5 methyltransferase; sigma-70 region 2 domain protein; Methyltransferase type 11; Methyltransferase type 12; Sigma-70 region 4 type 2; KEGG: deh:cbdb_A1379 SAM-dependent methyltransferase" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002459922.1" /db_xref="GI:219669487" /db_xref="InterPro:IPR000838" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7260486" /translation="MSTDLAEQPFKFDDVFMQYYPCIYNFIRWLIQDEDCAQDLAQET FLRAFVNLGTRSEHNLSPWLHTIARNLCHDYWRKNKRRGGRELLLQDAFECEDESSKP LAAIENKETAKQIYKILNLLKSEQRTALLLREIEGLSYDDAARVMGISVSAYTSLLNR ARNKFIKLIMTPYTKINKGLFTPKEYTVLYRWFGIDAWPEDPEQEIVHKAKHYFDNSA LSFDEFRNSLYPFHLDQAILNRVLNKDPQIIGDFGSGTGQFTLKAASSVNLEKTYAFD ISPKMVDFSQQRFKREGLRHIQCLPADLNSIPLESETLDIGYCLVVLHHLYDPGKAIK EMTRTLKPGGQLIIGDFGSHNYNLFTKNNKDLWSGFSPDQMTKWFNEAGLENIDIREE KDCIFKSTTQAGELVKIPLLMSSGIKRA" gene complement(3702888..3703739) /locus_tag="Dhaf_3469" /db_xref="GeneID:7260487" CDS complement(3702888..3703739) /locus_tag="Dhaf_3469" /inference="similar to AA sequence:KEGG:STH2054" /note="KEGG: sth:STH2054 oxidoreductase anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="oxidoreductase anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="YP_002459923.1" /db_xref="GI:219669488" /db_xref="GeneID:7260487" /translation="MHNWEIPLVLFTVLTQWAVGIALILTVVEFFFAKLVAGGREKFL RPAGMMTLPLVGGGLLFSVFHLGQPWQAVTALSNLGTAALSLEVLLFALVALLALAYS YIWWKKADQAGVRKLAGLGVSVVGLAAVAVSSKVYMLPARPAWNSWTTPGAFLLTAVV LGTFTVLFCLGRSKDKEVAPGIKSFSMVAMAALAAGLLVLSGSGAMAGNSAEQAAVAL GMFSSPVFYVRAILGVLVPAACVGLALQAEGRSALLGLGLAGVLVGEISGRILFYAST MALYPWF" gene complement(3703754..3704302) /locus_tag="Dhaf_3470" /db_xref="GeneID:7260488" CDS complement(3703754..3704302) /locus_tag="Dhaf_3470" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spe:Spro_2923 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002459924.1" /db_xref="GI:219669489" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260488" /translation="MSGQVGFYINSEGCYGCQTCQVACMSEQKTAPGVSWRRVRQLDT NNPPSHVNISMACNHCQDPQCLLNCPAGAYTRLENGIVYQDHAKCLGCRMCTYACPYG APQYDPVEKKVSKCSYCKERVEQGLMPRCAEACPGGNIIVGDLAELEARYQGVREIPG ITPKAEVTKPSILINPAKPHKN" gene complement(3704306..3706642) /locus_tag="Dhaf_3471" /db_xref="GeneID:7260489" CDS complement(3704306..3706642) /locus_tag="Dhaf_3471" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pmr:PMI0170 anaerobic dimethyl sulfoxide reductase, molybdopterin-binding subunit" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002459925.1" /db_xref="GI:219669490" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7260489" /translation="MENEKKKGISRRTFLKTTGAVATTAAIGGGIGLTTLAGDVEAAP ADISKAEIFTSSCTMECLHHNLKAYVVDGKLVKVESCEADETVACLRGLARTQWVNHP ERIKMPMLRDGEKGSNRWQEISWDEALDLIVEKIKETQAELGNQGICLRSFSGNFGSL SNAVAASFFNYLGGFTPVVGSLCCQAVTGSMTPIFGSRYEDTRDSIRDSRYLLAWGNN PAVTMQSYFKWYQEAQAQGAKMVTVDPRFSETAAQSDEWVPIIPGTDTALALGMIKII IEENLYDADFIRAHSSLPFLVAETSGKPALEDEEDPTSFLVLDEASGQITRHDGPGVV PALTVRNTAWASQYKTQFDILADECRPWTPEEVEKETDVPAASTIRMARDYATIKPAM LIQNMGGFQRTEWGSYAAAAHMYLAVLTGNIGGRGNGICDAGGVTTSIKVGNAIPSPK PQGEFGAVRGARFGRDILEDKPNKIGFLWTMTSSIMTQNPNTGAVKEALKKIPFVVTV DSLMTSTALYSDLVLPCTTIFESENVLASSRSHYVQLMEKAVDPPGEAHDDLWIFTQL AKRLGFGDAFDKPVAEHIKAVLEPTGITYEELLEKKCINPLPEVYIPFENGIFKTPTQ KAEFFVYDWHEKGFNPMLAYIRAEESVKGNPELAAKYPLACVQRKTNRTIHSTFGSLQ WLNQAVSDVPHVMIHPDDAGPRGIAHDDWVILYNDRGQHRCKANVSAHIKRGVVTAEN GWWEQQGGSSSYITSDFVEHLSGGQSCNNTLVQVRKEG" sig_peptide complement(3704306..3704419) /locus_tag="Dhaf_3471" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.810 at residue 38" gene complement(3706791..3707975) /locus_tag="Dhaf_3472" /db_xref="GeneID:7260490" CDS complement(3706791..3707975) /locus_tag="Dhaf_3472" /inference="protein motif:TFAM:TIGR02276" /note="TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mba:Mbar_A3461 hypothetical protein" /codon_start=1 /transl_table=11 /product="40-residue YVTN family beta-propeller repeat protein" /protein_id="YP_002459926.1" /db_xref="GI:219669491" /db_xref="InterPro:IPR011964" /db_xref="GeneID:7260490" /translation="MWRMGRYNRIIVLLLLAVSLTLTACAQPAGTGEPVQGAGTGAQI QNQAQAPAEEPSNEPAGEPKKMPEEALYVCQYTTNQVAVIDLATGETVREIPVGAKPI ALLQSPDGHYVYVANSGSGDVYRISTVSGEIEARIAMGNQPVAMAINSAGDRLYVLDY YLNRVSSVDLKIRSMVGFYPLNTCGFEERMEPPDCCHDIFGEPLGAGRKPSAIVLDEA ENKIYVGNMGTWDIAVIDLQEGKEVEAYDAAFGINEMIFAGSASRLYISAAGNELDIN DAILSMDLKGGGKTDKVKVGEKPVSIASSPDGTILYVVTEKEAKLVGLDTETGQVTGQ CLLSGQPGDLALSKAGDKAYIANLLEGTVFVVDTRDYEILETLQAGVTPRALVYSDHR QF" sig_peptide complement(3706791..3706871) /locus_tag="Dhaf_3472" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.920 at residue 27" gene complement(3707953..3708627) /locus_tag="Dhaf_3473" /db_xref="GeneID:7260491" CDS complement(3707953..3708627) /locus_tag="Dhaf_3473" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afe:Lferr_0205 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002459927.1" /db_xref="GI:219669492" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260491" /translation="MTLCRLEKVSKTYAMGEVVCPINEVSLTVDKGDFLAIEGPSGTG KSTLLYIMCGLLRPTGGDVFLKDENLSSLPDTKVTELRGDLVGFVFQETNLLQALTVE GNLRFAQSVGKGKKPDEAKISRYLEELGLSSRRDFLPGQLSVGQRRRLIVARALINDP QLILADEPTNDLDEMWAGKVMALLTGAVGGGGAVVMVTHNPQWAEKATKRYLMQEGRL VENGQI" gene complement(3708630..3709829) /locus_tag="Dhaf_3474" /db_xref="GeneID:7260492" CDS complement(3708630..3709829) /locus_tag="Dhaf_3474" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: sth:STH855 ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002459928.1" /db_xref="GI:219669493" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7260492" /translation="MWFLAWENSVRRKGQSVLTMAITGLTVLTFVLTFSVLFTLQEGL KLSNDRLGADIIVLPNKSNADAFQTIFTAEPVNIYMNQEVAREIGQVKGIEQLTSQFF TQTLDQSCCSIGGATRLVGYDPATDFILEPWLSEHNLKALADDQVIIGGNIPAFLGNQ ASVLGGVFTVAGSLYPTGSGMDETIFININVARELAQDSPYLQGLWKKEAPEKLISAV LIKTSTGYDPVQVAEDINSLELAVEAVATSEMVSAMRTQLLMVTRLILGLWLALFFVA CLALIGRFSALVRERKKEIGLLRAIGVQRTEVFKLILLEAWLLAGAGGAAGSIAGVLG VNSILTALRSSLGLPMGQWSWSSALGSGLLGIFVALFLGFIASVYPAWKSSRLDPQEA IARGEVD" gene 3710101..3710205 /locus_tag="Dhaf_3475" /db_xref="GeneID:7260493" CDS 3710101..3710205 /locus_tag="Dhaf_3475" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459929.1" /db_xref="GI:219669494" /db_xref="GeneID:7260493" /translation="MALGTGCAGGSNFGAGIAIIVVIILLLIALGIVF" gene 3710236..3710382 /locus_tag="Dhaf_3476" /db_xref="GeneID:7260494" CDS 3710236..3710382 /locus_tag="Dhaf_3476" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459930.1" /db_xref="GI:219669495" /db_xref="GeneID:7260494" /translation="MFGMGNMGMGGACCPQPVMPVSGGMGAGVGVGIIAIAILILIAL GVIF" gene complement(3710580..3711071) /locus_tag="Dhaf_3477" /db_xref="GeneID:7260495" CDS complement(3710580..3711071) /locus_tag="Dhaf_3477" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bha:BH2307 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459931.1" /db_xref="GI:219669496" /db_xref="GeneID:7260495" /translation="MVGFSLMMVLGIALIVLVLVIAGIALAVRSQHRNEEPSEQKERG KGMIKTVYTYLILFATLMMTIGGSVAAFMAVADLLAPQSYYMSFEEYKRNQSYDKGTT ETTPPAVEKSEEQLKADYQTMVNDEKNRSRERALNSLIKSFGWIVIPLPVFIYYQRRL KPE" sig_peptide complement(3710580..3710663) /locus_tag="Dhaf_3477" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.970 at residue 28" gene complement(3711168..3712952) /locus_tag="Dhaf_3478" /db_xref="GeneID:7260496" CDS complement(3711168..3712952) /locus_tag="Dhaf_3478" /inference="protein motif:PFAM:PF08269" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: hmo:HM1_0843 methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_002459932.1" /db_xref="GI:219669497" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR013163" /db_xref="GeneID:7260496" /translation="MKKIKYKILLSFLISSGLLIGLFGAYNIVSLIGWNQLEGQSIKK MLYDDYDNVIKSEVETAVHLVDFYYKQFQEGLMTEAEAQETAKKAVKGLRYGSEGYFW IDDVHGILVAHPMLPDQEGTDRRELTDPNGVKLIQQLLKAAQENENGGYSDYMWEKPN DVGTNELSSKRAYSKEFQPWNWVISTGNYVDTIDALIEEKNQELGDHLRQIVMVSVLI TVAALIILAVISLQISRRISDPLNALVKAFEKDANGQIYIQEINHTSQDEIGLLAKTL NELSAQLRNFISGAQNGVQDLTQQANDFNSLAGRVEDTVQDSAEKTARINELMEAVAA STGEITRAIEEIDAALTSISQRAEEGAVSSHEVSDRAQKLQDDSNHSIKKTKAIYDTT RSGVEQAISEVKKVEEMIHLLSEINAIADQTDLLALNAAIESARAGEAGRGFAVVADE IRKLAESTALTVQKIEGISRQVIVSVDKLVDNIRQVLVFIEEDVLANYDNMVSVGAKY ASDAKHINAIMLELSSTSEEISASTNEVSTRTGEVSGSISASAESIEGIFQQTEMILN HMKEIKSNSENNLATVTDLKQYIDKFKI" sig_peptide complement(3711168..3711251) /locus_tag="Dhaf_3478" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.484 at residue 28" gene complement(3713261..3714136) /locus_tag="Dhaf_3479" /db_xref="GeneID:7260497" CDS complement(3713261..3714136) /locus_tag="Dhaf_3479" /inference="protein motif:TFAM:TIGR00500" /note="TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: cbl:CLK_3044 methionine aminopeptidase, type I" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase, type I" /protein_id="YP_002459933.1" /db_xref="GI:219669498" /db_xref="InterPro:IPR000994" /db_xref="InterPro:IPR001714" /db_xref="InterPro:IPR002467" /db_xref="InterPro:IPR004027" /db_xref="GeneID:7260497" /translation="MSDKLGRNEECWCGSGQKYKKCHASIEEKIKSYAAKGYAIPDRS LLKNQKQIEGIRGSSKINIALLDYIGDFVVEGVTTEELDRLIYNKTKELGGIPATLNY KGYQKSSCISVNDIVCHGVPSRGVRLRNGDIVNIDVSTLYKGFYSDSSRMFCIGEVSV EKRKLVTVAKECTELGVQEVKPWGFLGDVGQAVNDHAKKNGYTVVKEIGGHGIGEKFH EDPWVGYVSKRGTGMLLVPGLIFTVEPMINMGKAGIVLDQNDGWTVYTADGKPSAQWE KTVLVTDTGCEILTY" gene complement(3714177..3714521) /locus_tag="Dhaf_3480" /db_xref="GeneID:7260498" CDS complement(3714177..3714521) /locus_tag="Dhaf_3480" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbb:CLD_0910 AraC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002459934.1" /db_xref="GI:219669499" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7260498" /translation="MSVQTIEAMAKWVEDNIAKNPTLTEMSAYVGYSPYYCSAKFHEH IGMTYKQFLARCRLKAAAGDLANTNDKITEIAFRYGYSSSESLTRAFVAAFKCSPSQF RKSSPDIPVSEG" gene complement(3714657..3715475) /locus_tag="Dhaf_3481" /db_xref="GeneID:7260499" CDS complement(3714657..3715475) /locus_tag="Dhaf_3481" /inference="protein motif:TFAM:TIGR02875" /note="TIGRFAM: sporulation transcription factor Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A; KEGG: hmo:HM1_0304 stage 0 sporulation protein A" /codon_start=1 /transl_table=11 /product="sporulation transcriptional activator Spo0A" /protein_id="YP_002459935.1" /db_xref="GI:219669500" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR012052" /db_xref="InterPro:IPR014879" /db_xref="GeneID:7260499" /translation="MQKPIRVLLADDNREFVEVLKEYIVRQPDMQLVGIAYHGNEALD LIYREQPDLVILDIIMPHLDGLGVLEKLQDDIKKPRVIILTAFGQENMTQRAVQLGAD YFILKPFDLETLGKRIRQLQGLIPLVKYESPGNGAATASPIAATSSSSALGANTRNLE VEVTRMIHQMGVPAHVKGYQYLRDAIVCVVQEVSLLGAVTKELYPMIAEKYNTTPSRV ERAIRHAIELAWDRGNIEFMNRFFGYTINVDRGKPTNSEFIAMVADKLRMAKML" gene complement(3715773..3717032) /locus_tag="Dhaf_3482" /db_xref="GeneID:7260500" CDS complement(3715773..3717032) /locus_tag="Dhaf_3482" /inference="protein motif:TFAM:TIGR02860" /note="TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; KEGG: hmo:HM1_0303 stage IV sporulation protein B" /codon_start=1 /transl_table=11 /product="stage IV sporulation protein B" /protein_id="YP_002459936.1" /db_xref="GI:219669501" /db_xref="InterPro:IPR008763" /db_xref="InterPro:IPR014219" /db_xref="GeneID:7260500" /translation="MKTKRAMVFASVLLCTFLSLNPTLHQVAQFPVLQESSQSALPQL TGILSSLIVTEEVKAAETDAIMAANTGKSEIVQVTYKLFGLIPFKSSAIQVMPQLKLL PGGQSIGVSLQAKGVMVVGQAAVQNQEGKLVYPAKEAGIEVGDIILKIDGREMNSDQD VANAIHRAGEKQGFSEILLNHNGQTMQKRVSTVYCPETNRHRVGLYVRNEAAGVGTLT FYDPTNHKYGALGHVINDVDTNQKIEILNGNVVASTIYAIEKGKRGHPGEKIGSFVNQ SKFSGNIEKNTVSGIFGSLEGEIKNPYFQEPITVGWESEIKEGPAKIYTVLEGERIEE YDVQIERIMHNRTDSKNMVIKVTDPELVEKTGGIIQGMSGSPIVQDGKIIGAVTHVFV NDASRGYGVFIQNMLKDADIIDKKEVA" sig_peptide complement(3715773..3715853) /locus_tag="Dhaf_3482" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.416 at residue 27" gene complement(3717239..3718906) /locus_tag="Dhaf_3483" /db_xref="GeneID:7260501" CDS complement(3717239..3718906) /locus_tag="Dhaf_3483" /inference="protein motif:TFAM:TIGR00634" /note="KEGG: hmo:HM1_0301 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="DNA repair protein RecN" /protein_id="YP_002459937.1" /db_xref="GI:219669502" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004604" /db_xref="GeneID:7260501" /translation="MLTEIHVENFALMEAVQLSFSRGLTIFSGETGTGKSMLIDALGV LLGGRASTDFIRHGLEKALVEGIFEECPPEVLEGLAEAGYPVEDGQLILSREINRSGR NICRVQGRTVPLTLYRTLVQGLVDIHGQMEHQSLFNPDSHRGLLDAFGGEQQLELLKQ VNQSAKNYRGLLQREQQLLRSEADRERREDILRYQIDEITAVDPQGDEEDSLLQEKKR LVNSEKIMGNITEVYSLLYEGNGQSSAFDQIGRSRKALQEIFRYDEGCSTMLEPIESI YYMIEDLASQVMSYREGFDFDPGRLDQIEERLIQLQRLRKYGHTVQEVLQTKEEMLKE LHTITHLQGELEDLRRDKEAARRDYTEKAKELSRVRAVQAQRLAEGLKKECADLGLEK SSFQVHFTALKEPQVGGAEQAEFYFSANVGEPLKPLAKVASGGEMSRLMLAMKSLLSK IESVGTFVFDEVDSGVGGRTIQKVGEKLARIAEGKQVFCITHAPQVAAFGDHHFGIQK EIINERTRTRIQYLTEDERIHELARMLGGDEEAIALEHARKLRKKIQ" gene complement(3718937..3719389) /locus_tag="Dhaf_3484" /db_xref="GeneID:7260502" CDS complement(3718937..3719389) /locus_tag="Dhaf_3484" /inference="protein motif:PFAM:PF01316" /note="PFAM: arginine repressor; KEGG: hmo:HM1_0300 arginine repressor" /codon_start=1 /transl_table=11 /product="arginine repressor, ArgR" /protein_id="YP_002459938.1" /db_xref="GI:219669503" /db_xref="InterPro:IPR001669" /db_xref="GeneID:7260502" /translation="MKTRRQMKIQEIINNQVIHTQEELAELLRKAGFDVTQATVSRDI KEMGLIKVPTSEDDYRYAVPGTAQPLSTPDRLKRRLRETVVTVNDSENLVVLRTIPGN AQALASLIDHSNWEEVIGTVAGDDTILLVVKPAGAVPSVRERIAKLMQ" gene complement(3719386..3719967) /locus_tag="Dhaf_3485" /db_xref="GeneID:7260503" CDS complement(3719386..3719967) /locus_tag="Dhaf_3485" /inference="protein motif:PFAM:PF06962" /note="PFAM: putative rRNA methylase; KEGG: lsp:Bsph_4247 SAM-dependent methyltransferase" /codon_start=1 /transl_table=11 /product="putative rRNA methylase" /protein_id="YP_002459939.1" /db_xref="GI:219669504" /db_xref="InterPro:IPR010719" /db_xref="GeneID:7260503" /translation="MNNRLQDIQGFLKTILRGSIQPGDIALDLTAGRGRDTLFLAQLV GAEGRVHAFDVQEVALQETQRLLKEQQMAERVHLYHWDHGRLLEKVQDPVQAAMFNLG YLPGHSQEITTQAASTLAALEAVLQLLRQGGVIALTVYRGHPGGLEEAAAVEEFLSCL PRRKYSVLRGEYINQLPNAPYWILVQKNKGDTE" gene complement(3719960..3720766) /locus_tag="Dhaf_3486" /db_xref="GeneID:7260504" CDS complement(3719960..3720766) /locus_tag="Dhaf_3486" /inference="protein motif:PFAM:PF01513" /note="PFAM: ATP-NAD/AcoX kinase; KEGG: hmo:HM1_0298 ATP-NAD kinase, putative" /codon_start=1 /transl_table=11 /product="ATP-NAD/AcoX kinase" /protein_id="YP_002459940.1" /db_xref="GI:219669505" /db_xref="InterPro:IPR002504" /db_xref="GeneID:7260504" /translation="MDRVGLWINHSKPEAITLAGQITHWFAERGWDVYTDWEKITAQG VGFLISLGGDGTLLEASREAAPYAIPVLGVNLGRLGFLCEIERNEIFDALEKITNHDY SIQERLMLTATVNDADQTFDVLNDVVFLREPASAMVTLQANLTGEPSVSYPADGLIVS TPTGSTAYALSAGGPIMSPNVEAILLTPLAAHSLSARPMVISDQENIEISLVRGEECI VSFDGYHRTAIKYGEKVVIKRAPINALLIRLGKRSFPRVVREKLKDRWHE" gene complement(3720773..3721582) /locus_tag="Dhaf_3487" /db_xref="GeneID:7260505" CDS complement(3720773..3721582) /locus_tag="Dhaf_3487" /inference="protein motif:TFAM:TIGR00478" /note="TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: aoe:Clos_1606 hemolysin A" /codon_start=1 /transl_table=11 /product="hemolysin A" /protein_id="YP_002459941.1" /db_xref="GI:219669506" /db_xref="InterPro:IPR002877" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR004538" /db_xref="GeneID:7260505" /translation="MSKGKERLDSLLVKRGLSPSREKAKATIMAGLVYSQGRRLDKPG LELAEDTLLEVKGDLIPYVSRGGLKLEKALKVFPVSFAEAVVADIGASTGGFTDCALQ NGAQRVYAIDVGYGQLDWKLRTDSRVVCMERVNARYLEGDSLPEQVDFVVSDVAFISV TKIFPAMLKILKEDGQIITLIKPQFEAGREHIGKKGVVKDPQVHQEVLVHVLEEAEKN GLKVKGLDFSPIRGPEGNIEYLAWLNREQENNLPWRELIPEIVQDAQGGRS" gene complement(3721575..3723470) /locus_tag="Dhaf_3488" /db_xref="GeneID:7260506" CDS complement(3721575..3723470) /locus_tag="Dhaf_3488" /inference="protein motif:TFAM:TIGR00204" /note="TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: hmo:HM1_0295 1-deoxy-D-xylulose-5-phosphate synthase" /codon_start=1 /transl_table=11 /product="deoxyxylulose-5-phosphate synthase" /protein_id="YP_002459942.1" /db_xref="GI:219669507" /db_xref="InterPro:IPR005474" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR005476" /db_xref="InterPro:IPR005477" /db_xref="GeneID:7260506" /translation="MGILAKIEQPRDLKGLTYPELEQLAQEIRAEMIDVVSANGGHLA PNLGVVELTLALHRVFDSPKDKIIWDVGHQSYVHKLVTGRQKEFKSLRLYKGLSGFPK RCESPHDCFETGHSSTSISAAVGFAKARDLRKEKNQVVAVIGDGAMTGGMAFEALNHA GHTKTNMIVVLNDNEMAIAQNVGAMSSYLNRLRTDPRYDRSKDEIENLLKRIPGIGSK MAKAAEKAKDSLKYLLVPGLLFEEMGFTYLGPVNGHDQIALEQVFEQAKMVKEPVLVH VLTQKGRGYEPSEKNPALFHGVGPFNKVTGEVIKKPAPPTYTQVFGEALCELAEKDPR ITAITAAMPSGTGLNLFAQKFPDRFFDVGIAEQHAVTFSAALAFGGMKPVVSIYSTFY QRAYDQVLHDVCLPHANVVMAIDRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDE NELRHMLYTSLQLDGPVALRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVG PMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGM GSAVMEVLGDEGLTDVVVERLGYDEYVDQGAISLLHQGYGLSVVGILKAAERLKVLQR IEGRSSV" gene complement(3723448..3724053) /locus_tag="Dhaf_3489" /db_xref="GeneID:7260507" CDS complement(3723448..3724053) /locus_tag="Dhaf_3489" /inference="similar to AA sequence:KEGG:Daud_1026" /note="KEGG: dau:Daud_1026 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459943.1" /db_xref="GI:219669508" /db_xref="GeneID:7260507" /translation="MGYKRKSWKHIAFVFLLSFTLAVITSLGTTILMRKTNLGLALIL LLVIVIINIGFDVIGTAATAATEQPHHAKAANKVPGARQTVFLVRHADTVANFTNDIV GDVTGAISGGMSASIVLEIIRTYPALEVHEIWIDTLLIALVASVTVTGKAAGKTFAIQ KADEIIGQVGSLTARIEDLTGWTMTDKKRKGGKRHGNSRKN" sig_peptide complement(3723448..3723534) /locus_tag="Dhaf_3489" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.971) with cleavage site probability 0.599 at residue 29" gene complement(3724077..3724520) /locus_tag="Dhaf_3490" /db_xref="GeneID:7260508" CDS complement(3724077..3724520) /locus_tag="Dhaf_3490" /inference="protein motif:PFAM:PF02681" /note="PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: ava:Ava_2705 acid phosphatase/vanadium-dependent haloperoxidase related" /codon_start=1 /transl_table=11 /product="acid phosphatase/vanadium-dependent haloperoxidase related" /protein_id="YP_002459944.1" /db_xref="GI:219669509" /db_xref="InterPro:IPR003832" /db_xref="GeneID:7260508" /translation="MSVLSEILDNHILISAMIAWFIAQTLKLIINFSIHRTFDVAFLF SSGGFPSSHSATVSALAIGVGKYYGWSSPTFAIAAIFGMIVMYDAAGVRRAGGKQAEV INQLVEGLYQQMTHLSQERLKELIGHTPFEVFAGAIVGIIVGVLM" gene complement(3724529..3725401) /locus_tag="Dhaf_3491" /db_xref="GeneID:7260509" CDS complement(3724529..3725401) /locus_tag="Dhaf_3491" /inference="protein motif:PFAM:PF00348" /note="PFAM: Polyprenyl synthetase; KEGG: pth:PTH_1194 geranylgeranyl pyrophosphate synthase" /codon_start=1 /transl_table=11 /product="Polyprenyl synthetase" /protein_id="YP_002459945.1" /db_xref="GI:219669510" /db_xref="InterPro:IPR000092" /db_xref="GeneID:7260509" /translation="MMFQKELEDYARLVDSYLAQFPWPTGTLAESMNYSLSAGGKRIR PVLALAAAHAVGGDCEDILPAVCALELIHTYSLIHDDLPAMDNDDYRRGRLANHKVFG EGQAILAGDALLTYAFELLAQPMSGVDSQRQLRAVREVAQAAGPEGMVGGQMLDLEAE EKQLNLAELEQVHRLKTGAILVVAARLGAILAGGTEEKIEALTSYAQAIGLAFQIKDD ILDLESDSETLGKPVHSDLRQHKSTYPSLMGLAGAKLELKIKTDEAHAALAVLGERAG FLHELADYIAQRKY" gene complement(3725403..3725651) /locus_tag="Dhaf_3492" /db_xref="GeneID:7260510" CDS complement(3725403..3725651) /locus_tag="Dhaf_3492" /inference="protein motif:TFAM:TIGR01280" /note="TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: bay:RBAM_022620 hypothetical protein" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII, small subunit" /protein_id="YP_002459946.1" /db_xref="GI:219669511" /db_xref="InterPro:IPR003761" /db_xref="GeneID:7260510" /translation="MMEAVNKELSFEEGIEHLERIVRELEQKEVPLEQALNLFRQGIE LVQKCNNQLDYAEKQMQILLENPNGELEVRPADFPVEG" gene complement(3725677..3726888) /locus_tag="Dhaf_3493" /db_xref="GeneID:7260511" CDS complement(3725677..3726888) /locus_tag="Dhaf_3493" /EC_number="3.1.11.6" /inference="protein motif:TFAM:TIGR00237" /note="KEGG: drm:Dred_1072 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII, large subunit" /protein_id="YP_002459947.1" /db_xref="GI:219669512" /db_xref="InterPro:IPR003753" /db_xref="InterPro:IPR004365" /db_xref="GeneID:7260511" /translation="MPKIWTVAELTREIGQTLNDNPDFVNCWVSGEISNYKNHRPSGH WYFTLKDEQSSMKGVMFRSRAERVRFTPQDGMKVLVRGSIRIYERDGTIQLYAEEMQP SGVGALYLAFEQLKERLGQEGLFAPERKKAIPRYPRRIGIVTSPTGAAIKDILKVMFR RNPQISWILAPAAVQGELAPKEVAQAIARLNRHSQVDVIIVGRGGGSLEELWAFNTEE VARAIAASGIPVISAVGHETDVTIADMVADLRAPTPSAAAELAVPVWRELKSDLEQLE ARLHSTMSSQLQRKRQRLDSLKTIGPLSNPFWRIDQNRQRLDSLSERVEQGMTRFVSD KNGILKLLTAKLDLLSPLAILGRGYSLTYGPKGNVLRKSDDINVGQQVQVRLQQGVLT CAVLAKSVDSD" gene complement(3726973..3727923) /locus_tag="Dhaf_3494" /db_xref="GeneID:7260512" CDS complement(3726973..3727923) /locus_tag="Dhaf_3494" /inference="protein motif:PFAM:PF01544" /note="PFAM: Mg2 transporter protein CorA family protein; KEGG: gtn:GTNG_1415 magnesium and cobalt transport protein" /codon_start=1 /transl_table=11 /product="Mg2 transporter protein CorA family protein" /protein_id="YP_002459948.1" /db_xref="GI:219669513" /db_xref="InterPro:IPR002523" /db_xref="GeneID:7260512" /translation="MIKICKNDAGNYQELSLDNLVKGAWIQLVNPTAWELNAVAEATE VPMDFLKAALDEEERSRIELEDHCMLVITNIPLMINETNYDTLPLGMIISEDHIITVC LEDNPVFSEFNAGTYRNFNTAKRTRFLFQILYKSASYYLKYLRQINKYTDRIEMDLRT SMKNQEIFQLMDLQKGLTYFTVSLRSNGVVMDRLMRLRSNSQSQHLIKMYEEDEDLLE DVIIENNQAIQMVEMYSHIIVGFSDAFASIISNNQNMVIKLLTSITITMAVPTMLASF WGMNVPVPFGDNPYGFGLVTVIAFSIAGISALTLWKKKMF" gene complement(3728355..3728990) /locus_tag="Dhaf_3495" /db_xref="GeneID:7260513" CDS complement(3728355..3728990) /locus_tag="Dhaf_3495" /inference="protein motif:PFAM:PF04961" /note="PFAM: Formiminotransferase-cyclodeaminase; KEGG: hmo:HM1_1889 methenyltetrahydrofolate cyclohydrolase, putative" /codon_start=1 /transl_table=11 /product="Formiminotransferase-cyclodeaminase" /protein_id="YP_002459949.1" /db_xref="GI:219669514" /db_xref="InterPro:IPR007044" /db_xref="GeneID:7260513" /translation="MAENTIWQWTTAEFLAQSASAAPTPGGGSVSAYVGALGASMVCM VANLTVGKEKYKDVEPQVQVILAKGEKLLHDLKNGLTQDIEEFSNFMAVLKLPKDTEE QKQARSAKMQEVLVSATDTPLAIAQNCYAVLELAQELAPIGNKGAISDVGVAAYLAES ALKAAMFSVDINLPQVKDSDYQEKVKAERERLFAQAEKLKNETVAVVQSRL" gene complement(3728990..3729844) /locus_tag="Dhaf_3496" /db_xref="GeneID:7260514" CDS complement(3728990..3729844) /locus_tag="Dhaf_3496" /EC_number="1.5.1.5" /inference="protein motif:PRIAM:1.5.1.5" /note="PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pth:PTH_1183 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase" /codon_start=1 /transl_table=11 /product="Methylenetetrahydrofolate dehydrogenase (NADP(+))" /protein_id="YP_002459950.1" /db_xref="GI:219669515" /db_xref="InterPro:IPR000672" /db_xref="GeneID:7260514" /translation="MAQLLDGKEISKVLKEEIKEEVKRWKEQGVNPKLAVVLVGDDPA SVVYAKSKQKVSDSLGIDFELTVLPADSSEESILALIDSLNANPDVHGIMIELPLPKH ISKERVMAAVRPDKDVDGVHPINRGYILSGEEGLFPATPESCIEIMLRSGVEIAGKHV VIVGRGETVGKPLVFLILKHNATVTICHSRTPDLGAFTRQADIIVAAVGKAKLVKKDM VKPGAIVVDAGINEIPGGICGDVDFEEVKEVASLISPVPGGVGSLTTALIMKNVLKGI TLQRKEGQ" gene complement(3730042..3730320) /locus_tag="Dhaf_3497" /db_xref="GeneID:7260515" CDS complement(3730042..3730320) /locus_tag="Dhaf_3497" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459951.1" /db_xref="GI:219669516" /db_xref="GeneID:7260515" /translation="MDKTEKRDHLEAIHYANDQGQTIRFTRYSNSNTDVRIDTEGAAV QNIMIHDKEAILAEKQGLVSIVWEDDTLFSLIGETERAELIKMAESIK" gene 3730598..3730819 /locus_tag="Dhaf_3498" /db_xref="GeneID:7260516" CDS 3730598..3730819 /locus_tag="Dhaf_3498" /inference="protein motif:PFAM:PF00196" /note="PFAM: regulatory protein LuxR; KEGG: pau:PA14_30580 LuxR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_002459952.1" /db_xref="GI:219669517" /db_xref="InterPro:IPR000792" /db_xref="GeneID:7260516" /translation="MNFPADQNRDIQSLTYREKDVLRLRVKGYSSKKIADSLTIEITT VRTHLKHIHRKLGVSSQVELIQFVHKMYI" gene 3731377..3732459 /locus_tag="Dhaf_3499" /db_xref="GeneID:7260517" CDS 3731377..3732459 /locus_tag="Dhaf_3499" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pdi:BDI_1973 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459953.1" /db_xref="GI:219669518" /db_xref="GeneID:7260517" /translation="MKKNIVACILVIAMLLSVGTTAVFAENTAQSLVEDINIDRKDIS SSQDPFEFPITPNSKEWGNYSSVQLKEMLNIPLSTAEKMDTAALLKMVLEYPFMIDIY AYDTIEQGFKGLSLEFNGAAVLLQRSDLAKNLLTHYKNSTEKMLAVETKSHISDKEII QKMFMESLLLYPKVSDKLSEDEKHIIVTLSQQVADKFQISPLVVGETSVTAAAPGDVL GYGYVYTPAPPVTVLVLKLQDFDAEQKKVINNDYDTRYPAATRLSSATYNYNCHSYAW YLASSSNPWWMNDPSAYMSESRYTQVTNPIVGDKVYWIGTHSGLVTSVSGSNITVTSK WGAAGLYRHPINDCPYPIVIQKTFWR" sig_peptide 3731377..3731454 /locus_tag="Dhaf_3499" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 26" gene 3732467..3732943 /locus_tag="Dhaf_3500" /db_xref="GeneID:7260518" CDS 3732467..3732943 /locus_tag="Dhaf_3500" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: myosin" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459954.1" /db_xref="GI:219669519" /db_xref="GeneID:7260518" /translation="MAKIIVHRVLRGILFAFVFISIMTAISACGNPDSLNVIQKKEDE ISLEINNTKRISIYDIVSSDSNNNTHFTDPAIIKQIEDLFNKTSFLKCEDNSIQGYSL FITFSNDTFSSDSNSLHFFVYANDIVDIDGIKYKSRDSIFDAINDFYLQKKISPPR" sig_peptide 3732467..3732553 /locus_tag="Dhaf_3500" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.951) with cleavage site probability 0.531 at residue 29" gene complement(3733244..3734635) /locus_tag="Dhaf_3501" /db_xref="GeneID:7260519" CDS complement(3733244..3734635) /locus_tag="Dhaf_3501" /inference="protein motif:TFAM:TIGR01316" /note="TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hmo:HM1_0290 glutamate synthase (NADPH), homotetrameric" /codon_start=1 /transl_table=11 /product="glutamate synthase (NADPH), homotetrameric" /protein_id="YP_002459955.1" /db_xref="GI:219669520" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR006004" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7260519" /translation="MALKVPRHEMPCQDPKERAHNFNEVALGYASETAIEEAQRCLQC KKPKCVEGCPVNISIPEFIQKITEEDFEGAAAVIKQSSSLPAVCGRVCPQESQCEAKC ILGIKGESVAIGRLERFVADYEISKGCKIPEVAPPSGKKVAIIGAGPAGLACAGDLAK AGHKVTIFEALHVAGGVLMYGIPEFRLPKDIVQNEICNLEPMGVEILVNQVVGKVTSV HELMQNGYDAVFIGTGAGLPNFLGIPGENLNGVYSANEFLTRTNLMKGYRFPEYKTPV KIGKKVAVFGAGNVAMDAARTALRLGAEEVSIVYRRSRAEMPARHEELEHAEEEGVNF QLLTNPVAIQGDEKGAVKSLTCLRYELGEPDASGRRKPVPIPGSEFEIEVDTVVVAIG QGPNPLVTQSTEGLELNKWGNIVVNEETLETSIPGVFAGGDIVTGAATVILAMGAGKK AAAGINAYLKNKG" gene complement(3734638..3735486) /locus_tag="Dhaf_3502" /db_xref="GeneID:7260520" CDS complement(3734638..3735486) /locus_tag="Dhaf_3502" /inference="protein motif:PFAM:PF00175" /note="PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mta:Moth_1518 ferredoxin--NADP(+) reductase subunit alpha" /codon_start=1 /transl_table=11 /product="ferredoxin-NADP(+) reductase subunit alpha" /protein_id="YP_002459956.1" /db_xref="GI:219669521" /db_xref="InterPro:IPR001433" /db_xref="GeneID:7260520" /translation="MYRVVKRRQLASAPCIVLLEVEAPAVAAKVEPGQFVIVRMDEQS ERIPLTVMDFDREKGTITIVIQDVGYSSAMINSMEEGSHFLDFVGPLGVPSEIENLGT VVCIGGGLGVAPVYPIARALKEAGNKLISVIGARSADILILEEEMAAISDELVIATDD GSKGVKGFVTNGLEQIIAQGTKIDAIWAIGPVVMMRSVANFTRPLGIKTIVSMNPIMV DGTGMCGACRLSVGDETKFACVDGPEFDGHLVDFDLAMKRLAFYKDEEERAKVSKDCD CGKGAQ" gene complement(3735562..3736515) /locus_tag="Dhaf_3503" /db_xref="GeneID:7260521" CDS complement(3735562..3736515) /locus_tag="Dhaf_3503" /EC_number="3.4.24.57" /inference="protein motif:PRIAM:3.4.24.57" /note="PFAM: peptidase M22 glycoprotease; KEGG: sth:STH1848 O-sialoglycoprotein endopeptidase" /codon_start=1 /transl_table=11 /product="O-sialoglycoprotein endopeptidase" /protein_id="YP_002459957.1" /db_xref="GI:219669522" /db_xref="InterPro:IPR000905" /db_xref="InterPro:IPR017861" /db_xref="GeneID:7260521" /translation="MTLYLGIDTSAYTTSLAIVDEQAELVYENRKILTVPEGERGLAQ SAALFQHVQNLPQLVTAVPPQYWEKVSALGVSTAPRPIQESYMPVFLPGYGVAAAMAS ARCIPLVETSHQEGHLAAGIASSKLKEPHFLAIHISGGTTELLEVHHTQPGKLDIQLL GGTTDLHAGQFVDRVGVRLGLPFPAGKSLEELARQADPGAAAWLPSAVRGFEVSFSGV ETAAQRLIDQGKNPADVARAVEGCIVRTLGKLLQAGMEKTTLSEILIVGGVASNQFIR QELKKRLARHANLHWAEPDWSRDNAIGVALLALEKVRGCII" gene complement(3736493..3736939) /locus_tag="Dhaf_3504" /db_xref="GeneID:7260522" CDS complement(3736493..3736939) /locus_tag="Dhaf_3504" /inference="protein motif:TFAM:TIGR01951" /note="TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: drm:Dred_1069 NusB antitermination factor" /codon_start=1 /transl_table=11 /product="NusB antitermination factor" /protein_id="YP_002459958.1" /db_xref="GI:219669523" /db_xref="InterPro:IPR006027" /db_xref="InterPro:IPR011605" /db_xref="GeneID:7260522" /translation="MSRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSI PFAEELAEGTLTHKEVIDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRV TINEAIEIAKRYGSEESGKFINGILDKVVESVNKKDEKGNDTLSRD" gene complement(3737017..3737541) /locus_tag="Dhaf_3505" /db_xref="GeneID:7260523" CDS complement(3737017..3737541) /locus_tag="Dhaf_3505" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: nth:Nther_1704 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459959.1" /db_xref="GI:219669524" /db_xref="GeneID:7260523" /translation="MLGYSVGALLVVIGGCILAISTGWELPYELLLAGLDWLRTNTWE SLVIAILIMILGILPFLKPRKSIDHTFRTVSQLGEVRVTIDAIGDLIVRSAQSKNEVR LVKPLIKQREDGLEILLDCQFNFETVIPEVSEQLQTQIKEDVERFTGIKVAEVKVLAR RLDPVQSNRPPRVR" gene complement(3737605..3738003) /locus_tag="Dhaf_3506" /db_xref="GeneID:7260524" CDS complement(3737605..3738003) /locus_tag="Dhaf_3506" /inference="protein motif:PFAM:PF03780" /note="PFAM: protein of unknown function DUF322; KEGG: mta:Moth_1523 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF322" /protein_id="YP_002459960.1" /db_xref="GI:219669525" /db_xref="InterPro:IPR005531" /db_xref="GeneID:7260524" /translation="MEKPDIENALGTIKIADEVVEIIAGLAASQVEGVAGMSGGLVGD IAQMLGRGKNLSKGVKVEVGEQEAAVNLYLVVEYGVSIPEVSLKVQEAVKEAIESMTG LLVVETNVHVQGVNFRPVPEIKDEELARLK" gene complement(3738094..3739440) /locus_tag="Dhaf_3507" /db_xref="GeneID:7260525" CDS complement(3738094..3739440) /locus_tag="Dhaf_3507" /inference="protein motif:TFAM:TIGR00514" /note="TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: drm:Dred_1065 acetyl-CoA carboxylase, biotin carboxylase" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxylase" /protein_id="YP_002459961.1" /db_xref="GI:219669526" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR004549" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="InterPro:IPR013651" /db_xref="GeneID:7260525" /translation="MFKKVLIANRGEIALRIIRACREMDIETVAVFSEADRDALHVRE ADQAVCIGPHPSTKSYLNIPNIISAAELTGVDAIHPGYGFLSENARFAEICESCGITF IGPSPRAIETMGDKATARKTMIEAGVPVVPGSKEVLTDVESASVLAKEIGYPVMIKAS AGGGGKGMRIAQNPKELAKSIQAAQSEAQAAFGNSEIYLEKYVEEPRHIEFQILADKH GNVIHLGERDCSLQRRNQKLLEEAPSSALTPELRKAMGEAAVKAAKAADYSSAGTIEF LLDKHGHYYFIEMNTRIQVEHPVTEFVTGIDLLKAQIRVAAGEPLGIEQEDVQIRGWA MECRINAENSEKNFMPSPGTIEFYHPPGGPGVRVDSAAYQGYTIPPYYDSMIGKLIVW GADREEAIQRMKRALEEFYIEGVHTTIPFHLKVLDNAFFRRGEVYTNFIQRRILGE" gene complement(3739457..3741322) /locus_tag="Dhaf_3508" /db_xref="GeneID:7260526" CDS complement(3739457..3741322) /locus_tag="Dhaf_3508" /EC_number="4.1.1.3" /inference="protein motif:TFAM:TIGR00531" /note="catalyzes the formation of oxaloacetate from pyruvate" /codon_start=1 /transl_table=11 /product="pyruvate carboxylase subunit B" /protein_id="YP_002459962.1" /db_xref="GI:219669527" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR001249" /db_xref="InterPro:IPR003379" /db_xref="GeneID:7260526" /translation="MKPVKITDTTLRDAHQSLWATRMRTEDMLPILTELDQVGYHSLE VWGGATFDVCLRFLGEDPWERLRTIKQHVKKTPLQMLLRGQSLVGYQHYPDDVVREFV QLSVKNGIDIIRIFDALNDVRNMIVPMEAAKAAGAHVQASVVYTISPVHTLEHYVETA KELVALGADSICIKDMAGLLTPQRGYKLVRMLKEELGVMIQLHTHYIGGMGTIAYVKA AEAGVDVIDTASVPLAFGASQPPVELVVRALQEFEFAPEMNIPQLFSIANYFEELRKS RGFERGITRISDMRVFEHQVPGGMISNLVSQLEEQKALNRINEVLDEIPSVRAELGYP PLVTPTSQIVGTQAVLNVLSGARYKLVPAEVKAYVRGLYGKPPAPVDPEIQKLIIGDE EVLTIRPADKLEPGLKKAEQESKEFALSREDVLSYALFPQVAKKFFIEREKGITVAAK SPSVPVAKEDSKMDLKEIKELIKLIGDTDITELNLESEGVKVSIKKGSMPVPAMALPV MGGTAEAAVQPAPAAVSAPVKVVQEPQSPAEAPKKNLQYIKAPMVGTFYRSPAPDAPS FVERGQMVKESQTVCIIEAMKLMNEIEAEISGRIVEILVENGQPVEFGQPLFAVE" gene complement(3741554..3742123) /locus_tag="Dhaf_3509" /db_xref="GeneID:7260527" CDS complement(3741554..3742123) /locus_tag="Dhaf_3509" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pth:PTH_1173 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459963.1" /db_xref="GI:219669528" /db_xref="GeneID:7260527" /translation="MKVMTLKRWGDLKKGQKWVLVGSVIVALLVLYAFWQLVFGDEPL SQPTHESMPVQVQPEGQSIYFSAEVVKPLPQGGDYFVNYRLQREASRQEAKTMLAPLL DSNVVKTREEAQEKWLQLSHKIQKEEEIENLLKISGIKDAIADLGNNEVAVIVYAPNL EGTEIKVIQDIVFRVTNTAKEQVRIAYRY" sig_peptide complement(3741554..3741676) /locus_tag="Dhaf_3509" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.892) with cleavage site probability 0.733 at residue 41" gene complement(3742120..3742680) /locus_tag="Dhaf_3510" /db_xref="GeneID:7260528" CDS complement(3742120..3742680) /locus_tag="Dhaf_3510" /inference="similar to AA sequence:KEGG:HM1_0280" /note="KEGG: hmo:HM1_0280 stage III sporulation protein AG, putative" /codon_start=1 /transl_table=11 /product="stage III sporulation protein AG, putative" /protein_id="YP_002459964.1" /db_xref="GI:219669529" /db_xref="GeneID:7260528" /translation="MNLFKDIQPKILIPAVLVVAAVCMLLYSKGGGSAPVVPMNQAVE NRDTVEVTRISTLEKEMEKKLVQNLQQMSGVGSVQVSVTLSSSLRSDYATNGSVTKKT TKESDKSGGTRESTEVTENNQLVMPNGASQPVIVMEERPNVAGVLIIAEGASDPNVRE NIHNAVRTLLDISSDKINVQPMGGVL" sig_peptide complement(3742120..3742206) /locus_tag="Dhaf_3510" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.697) with cleavage site probability 0.361 at residue 29" gene complement(3742749..3743339) /locus_tag="Dhaf_3511" /db_xref="GeneID:7260529" CDS complement(3742749..3743339) /locus_tag="Dhaf_3511" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mta:Moth_1531 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459965.1" /db_xref="GI:219669530" /db_xref="GeneID:7260529" /translation="MESLQTLVRNLAIILLLASFLEMLLPNKSMKGFVKLVMGLFVIS AILTPLTTLLGMTVESAIPAWTESSAQELAVLAPGEVGEAISTNAVQEQYKAIVVSQI KALTVGMEGIKELQVNVDLAEGSSGLTNIPRIDRIMIHLDAEEQGVQPIEDIVIDLNE PKPIQKQVLSATALEIRDKVALFMQMPREQIIITEG" gene complement(3743352..3744521) /locus_tag="Dhaf_3512" /db_xref="GeneID:7260530" CDS complement(3743352..3744521) /locus_tag="Dhaf_3512" /inference="protein motif:TFAM:TIGR02829" /note="TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: hmo:HM1_0278 stage III sporulation protein AE, putative" /codon_start=1 /transl_table=11 /product="stage III sporulation protein AE" /protein_id="YP_002459966.1" /db_xref="GI:219669531" /db_xref="InterPro:IPR014194" /db_xref="GeneID:7260530" /translation="MQRVIIIFLFFFFIGNGTTPSLVYGAEEMSEPTADLAAQVDLTE VRGFLEQIDRDVQESLPNFSLAKFFDDLRQGNINLHPVEIGKTLLALLGKEILESAPL IGKLLILAVLTAVLQQLQSAFSGEVGKMAQILAYLVLMGIALATFQIAMNLASDSIQT MTGFMQTLLPVMMTMLVAMGNLTTAALFKPIVLGSLTFLATLIKTVALPLFFLAAVLK LFNHISSEFKLSRLAGLLEFTGKLSLGIILTVFIGVMAVQGVTGGVADGVVLRTAKYS ADLIPVVGKFFKDAVELVVTSGLLLKNALGIVAIIALALICLGPVVKLVAMILVFKIS SALIEPLGQKELADTLQEMSKSLIFIFASVASVAIMFFMAIAVVVGSGNLTVMLR" sig_peptide complement(3743352..3743429) /locus_tag="Dhaf_3512" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.731) with cleavage site probability 0.685 at residue 26" gene complement(3744531..3744917) /locus_tag="Dhaf_3513" /db_xref="GeneID:7260531" CDS complement(3744531..3744917) /locus_tag="Dhaf_3513" /inference="protein motif:TFAM:TIGR02849" /note="TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: hmo:HM1_0277 stage III sporulation protein AD, putative" /codon_start=1 /transl_table=11 /product="stage III sporulation protein AD" /protein_id="YP_002459967.1" /db_xref="GI:219669532" /db_xref="InterPro:IPR014211" /db_xref="GeneID:7260531" /translation="MEIWQIVGIALVVAIIGVVLKEVRKEIALQLTILTGVIIFTLIL DKIKIIIDLLQNLADQANISSYYLIIVLKIVGVAYLAEFGADICRDAGEKALATKIEI AAKVGVLVLAIPIIVAILESVMRLVP" gene complement(3744930..3745127) /locus_tag="Dhaf_3514" /db_xref="GeneID:7260532" CDS complement(3744930..3745127) /locus_tag="Dhaf_3514" /inference="protein motif:TFAM:TIGR02848" /note="TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation AC family protein; KEGG: cdf:CD1194 stage III sporulation protein AC" /codon_start=1 /transl_table=11 /product="stage III sporulation protein AC" /protein_id="YP_002459968.1" /db_xref="GI:219669533" /db_xref="InterPro:IPR009570" /db_xref="GeneID:7260532" /translation="MDFYMVMKIAGIGLLVGVLVMVLEQANRKDIAQLTVLAGVVVVL YIVVQAVADLFSLVRSVFQIY" gene complement(3745146..3745655) /locus_tag="Dhaf_3515" /db_xref="GeneID:7260533" CDS complement(3745146..3745655) /locus_tag="Dhaf_3515" /inference="similar to AA sequence:KEGG:Daud_1008" /note="necessary for complete engulfment of forespore" /codon_start=1 /transl_table=11 /product="stage III sporulation protein SpoAB" /protein_id="YP_002459969.1" /db_xref="GI:219669534" /db_xref="GeneID:7260533" /translation="MIWVGALLMIIGCGSLGLYSAARIRKRPVELRECLTALTLLDTE IFWGNTPLPEAFSILRDRTDGAWSGFFAELSERLHKGEGAYGAWNETIEQQKKNFCLK TEDWQVIKDVGKGLGRSDRQEQHKQIELVKQQVSLVKEHAAQWSEKQAKMWSYLGFLG GAAVVLFLI" sig_peptide complement(3745146..3745208) /locus_tag="Dhaf_3515" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.903) with cleavage site probability 0.716 at residue 21" gene complement(3745652..3746737) /locus_tag="Dhaf_3516" /db_xref="GeneID:7260534" CDS complement(3745652..3746737) /locus_tag="Dhaf_3516" /inference="protein motif:TFAM:TIGR02858" /note="TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: pth:PTH_1166 hypothetical protein" /codon_start=1 /transl_table=11 /product="stage III sporulation protein AA" /protein_id="YP_002459970.1" /db_xref="GI:219669535" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR014217" /db_xref="GeneID:7260534" /translation="MSLRYTLHPINPNPELKPKTKPLAVSINQGKVAGKNPSEDFGRW FGSNLAGIFLQIQDIALKDIEEIRLRIERPLLILGHHRELFIDEQGRTVAAEKGYRVQ REDVLQALERMTQSSLYAAEEEMKQGFITLPGGHRVGITGEAIMKQGEVQTLKHISAL NIRLAKAVEGKAELILPKLLTKEGTLHHTLILSPPRAGKTTLLRDLIRRLSDGSPALN LPGQTVGVVDERRELAGMWQGIPAYNLGCRTDILDGCPKRMGINMLIRSMAPQVVAVD ELGHPEDVEAVLDALRTGVKILSTAHAATMSEALRRPTLKALFEFGVFERVVVLSRRQ GPGTVEEIIVLAPTDRVHKEMVRGDAL" gene complement(3746783..3746878) /locus_tag="Dhaf_3517" /db_xref="GeneID:7260535" CDS complement(3746783..3746878) /locus_tag="Dhaf_3517" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459971.1" /db_xref="GI:219669536" /db_xref="GeneID:7260535" /translation="MVGYLKNGTCPLDSPLIPMDKFFGGKQEKHV" gene complement(3747024..3748682) /locus_tag="Dhaf_3518" /db_xref="GeneID:7260536" CDS complement(3747024..3748682) /locus_tag="Dhaf_3518" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: hmo:HM1_2413 metallo-beta-lactamase family protein, putative" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002459972.1" /db_xref="GI:219669537" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR004613" /db_xref="InterPro:IPR011108" /db_xref="GeneID:7260536" /translation="MKLSIIPLGGTGEIGKNLLVFEYGDSIIVIDGGVKFPDDELLGI DLVIPDITYLEKRKHKIQGIFITHGHEDHIGGLPFLLPKLEAPVYGTKLTMGLVRAKL RERGGYPENLLRVIDPGEPVKAKDFQVEAFRVTHSIPDAVGYGILTPLGRVIYTGDFK VDYTPIDGQEMDLGRLAAWGQEGVLALLCDSTNAERSGSTISEKVVGKTLMDAFSRAE GKIIMATFASNVHRIQQALEAAALLKRKVCVVGRSMEAVVATARELGYLHLPDPDMLI ETSSVNDISPSRLLILTTGSQGEPLAALTRMATGSHRQVNVSAGDTVVISATPVPGNE KLIGRTINHLFQIGADVITKDMGLVHVSGHANQEEIKLIIRLTRPKFLIPHHGEVRHQ MAFRKIGNLMGYDDKKIAITQIGTRVLLDTDKMECAERVESGSVFVDGLGIGDVGQIV LRDRQQLSQDGVVVVVAALSKGSPTTLVSGPDIISRGFTFMKEAEELVEGAKKVVAAS IETQINKERWEWGVLRGSIHESLSQYLWDKTRRRPMILPVLLQF" gene complement(3748776..3749333) /locus_tag="Dhaf_3519" /db_xref="GeneID:7260537" CDS complement(3748776..3749333) /locus_tag="Dhaf_3519" /inference="protein motif:TFAM:TIGR00038" /note="Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA" /codon_start=1 /transl_table=11 /product="elongation factor P" /protein_id="YP_002459973.1" /db_xref="GI:219669538" /db_xref="InterPro:IPR001059" /db_xref="InterPro:IPR011768" /db_xref="InterPro:IPR013185" /db_xref="InterPro:IPR013852" /db_xref="InterPro:IPR015365" /db_xref="GeneID:7260537" /translation="MISSNEFKTGLTIEVDNDVYTIIEFQHVKPGKGAAFVRTKLKNV KTGGIIERKFNAGEKVPKAHVERREMQYLYKDGDHFVAMDNETYEQTSLTEAQIGDGV KYLKENMNLGILFFNGTVIGVDLPNTVILEVAHTEPGVRGDTATGGSKPATLETGAVV QVPFFVNEGEKLIIDTRTGNYVQRA" gene complement(3749482..3749919) /locus_tag="Dhaf_3520" /db_xref="GeneID:7260538" CDS complement(3749482..3749919) /locus_tag="Dhaf_3520" /EC_number="4.2.1.10" /inference="protein motif:TFAM:TIGR01088" /note="catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase" /protein_id="YP_002459974.1" /db_xref="GI:219669539" /db_xref="InterPro:IPR001874" /db_xref="GeneID:7260538" /translation="MGKIWVLHGPNLNLLGRREPDKYGTQTLDEINNELLHKAYTAGI PIQVEQTNFEGELIQWIHSMGPDDFLIINPGAWTHYSYAVRDAITSVQVPAIEVHLSN IHAREEFRKTSVIAPVCCGQISGLGGKSYSLALDYALEALTQK" gene complement(3750111..3750668) /locus_tag="Dhaf_3521" /db_xref="GeneID:7260539" CDS complement(3750111..3750668) /locus_tag="Dhaf_3521" /inference="protein motif:PFAM:PF01476" /note="PFAM: Peptidoglycan-binding LysM; KEGG: sth:STH1567 gamma-D-glutamyl-L-diamino acid endopeptidase I" /codon_start=1 /transl_table=11 /product="Peptidoglycan-binding LysM" /protein_id="YP_002459975.1" /db_xref="GI:219669540" /db_xref="InterPro:IPR002482" /db_xref="GeneID:7260539" /translation="MEDYVIQPGDTFYQLAQRWGGTCEEWSLANPGLNPDYLQIGQKV YLPRTVNPGGNEHYAVITPQQGVGYAGDHLDEVEMEVEGVKFRIKRIGESRIPHEIHL TVPRTEIRKIQPCGIYGPSEVQIMLSNVNIIHSPRLMSDRPRIEAQNGGTTQGNQGNA QQNNAPELSQVRELYSDVRQDRPVF" gene complement(3750699..3751202) /locus_tag="Dhaf_3522" /db_xref="GeneID:7260540" CDS complement(3750699..3751202) /locus_tag="Dhaf_3522" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459976.1" /db_xref="GI:219669541" /db_xref="GeneID:7260540" /translation="MIKTKESLRRQFPKLGYSALITLVILLCLIGGTLVFRRQEVGAL RQEIKHGEGLILQNPAKEAASDLWLMDDLLLVMDECIRIFREENLAVRSYHLEGIFEG EVNPSFLYFALIRLQVQGTWSGIERGLTRIEGISEGGIYVEEAVLEKNEGEILLKIFF FEPDNLS" gene complement(3751195..3752664) /locus_tag="Dhaf_3523" /db_xref="GeneID:7260541" CDS complement(3751195..3752664) /locus_tag="Dhaf_3523" /inference="protein motif:PFAM:PF05137" /note="PFAM: Fimbrial assembly family protein; KEGG: dth:DICTH_0889 hypothetical protein" /codon_start=1 /transl_table=11 /product="Fimbrial assembly family protein" /protein_id="YP_002459977.1" /db_xref="GI:219669542" /db_xref="InterPro:IPR007813" /db_xref="GeneID:7260541" /translation="MPTEQGRVCVELTDHELRWLWYIQKGKDKGSLAPAQFEITPLPK GLIKQGKVLHLDTFLSILKGYLEQYKIDFQLPRNPKIDIGLPLQNQFIREYHLPWVKK RNRTGLLRYLAEEEIPIPEEELVYDYFLEEEKGPSRRLRVILSGIRNSVLSPVIFCFR KAGFEINKVCFSQLAWGRVLGFGPEGNTLFLREDEGQIQYIFYKGGIPEIIRSFPATL QYFGEEEWKHEIHRMLLYLSSPHDQAELMRILWSQDRVAEKTGKRIGEYIKGVRGKVP VLQGVDEAFYAFWGSQPLNALAAYAPEKYLAVLGLALEDEKLGQNNFWRTENLKKKKQ RITWGIAGLILLVNIYGLRMLVSTQQTLDTLRVEAQRLSEITANQTWEREKETALKQT WDRIIGNPTAVGQEIRELTAYAPEGIYLERIEIKGRTLLIQGLATESLEVQRMFQQLK ALGWRKVQLAKYQTAGDSLEDSFREGMPIQFVLKAEEDD" gene complement(3752694..3753455) /locus_tag="Dhaf_3524" /db_xref="GeneID:7260542" CDS complement(3752694..3753455) /locus_tag="Dhaf_3524" /inference="protein motif:PFAM:PF06750" /note="PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: chy:CHY_0634 type IV prepilin peptidase" /codon_start=1 /transl_table=11 /product="peptidase A24A domain protein" /protein_id="YP_002459978.1" /db_xref="GI:219669543" /db_xref="InterPro:IPR000045" /db_xref="InterPro:IPR010627" /db_xref="InterPro:IPR014032" /db_xref="GeneID:7260542" /translation="MGIELSVLSGILGVIIGSFLNVVIYRVPQGKSIIFPGSHCPACG HNLRPWELVPVLSFLILRGRCAQCREKISWRYPLIEGLNGSLYFYAAWVNHSRSFLEL GINFYFISVLLVLAVIDWDTYRLPDVFTLPLLGVGIVAGFLLPQGPSGWESLATALGV GGVFWMITRLYPEGMGLGDIKLIAGLSAFLGFPEALIAVFIASFTGSIGGLIMLSFEK RSFREQIPFGPYLVLGGWIVFFWGQTILSFYYSLF" gene complement(3753503..3753991) /locus_tag="Dhaf_3525" /db_xref="GeneID:7260543" CDS complement(3753503..3753991) /locus_tag="Dhaf_3525" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pcr:Pcryo_0257 general secretion pathway protein G" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459979.1" /db_xref="GI:219669544" /db_xref="InterPro:IPR000983" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260543" /translation="MHFGQGNSDNAQRGFTLVEVLMVVFIIAMLSAIIIPKVSASSEA ARKNSDIATGHQVKSALDRYQVENGRYPKSTEVTGNEGNISAPVLIPKYIAKLSVDTT QQEAAEGKKGFGIGTLATNGSIPENAQTHLIMLYLTADGSAAEVRVYDANLTNILWSS AN" gene complement(3754019..3755242) /locus_tag="Dhaf_3526" /db_xref="GeneID:7260544" CDS complement(3754019..3755242) /locus_tag="Dhaf_3526" /inference="protein motif:PFAM:PF00482" /note="PFAM: type II secretion system protein; KEGG: kra:Krad_3026 type II secretion system protein" /codon_start=1 /transl_table=11 /product="type II secretion system protein" /protein_id="YP_002459980.1" /db_xref="GI:219669545" /db_xref="InterPro:IPR001992" /db_xref="InterPro:IPR003004" /db_xref="GeneID:7260544" /translation="MRSRSFAWRALDQEGNHLEGIWEVRQEGEVRHRLFLKGYYPLAI SPRHHRLFNLLSYFELLSKKSDRLRIWAGITQRLSLLLGAGLPLLLAIDILEKQSKGR ITRLAWGQVKEQLEAGAELSEALNFLVPPPTPYIRAMAQAGERAGRLPEILDHLSRDL FEEHTYRRKLKGTLTYPVFLLVLTIGLIYALSFLVLPVYEQIFLSMDAELPVLTQVIF RVSHGLPFLVLGVFSVGMSSVLLLRLRHLDDWRERLRGGLSKVPFLGRVYQLYDYLQF SQILGTLLDAGIPLLEALRLTYGAVLTFSMKKVVADLEEAVRAGKRLTAVLAGRSDFP GDATQMLEVGEESGQLSTMLYHLSRLFRMELEEQMTQVPHLVGPLLVIVLAGIIGLVA IGVLLPIFDIGTYLQ" gene complement(3755255..3756289) /locus_tag="Dhaf_3527" /db_xref="GeneID:7260545" CDS complement(3755255..3756289) /locus_tag="Dhaf_3527" /inference="protein motif:TFAM:TIGR01420" /note="KEGG: csc:Csac_1061 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="YP_002459981.1" /db_xref="GI:219669546" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR006321" /db_xref="GeneID:7260545" /translation="MTIEQLLKEAAQRRASDIHLTVDSPPVFRIDGSLVRAEEEILTP NVLDEMARTLMDSAQSSKFKESGEIDFSHSIPDVGRFRVNAFRQRGAAGIAIRLIPFN ISTPEQLGLPPVCIEFANLRKGLVLVTGPTGSGKSTTLASMIDYINRTRSEHIVTVED PIEYMHKHRLSLVNQREVGSDTQSFANALRAALRQDPDVILVGEMRDLETISTAVTAA ETGHLVFSTLHTNDATQAVDRMIDVFPPFQQQQMRVQLAAVLQGVIAQQLLPRKDQQG RVAAQEILVVTPAVRNLIREGKTHQIANTMQTGGKLGMQSMEKAIQEHVRAGRISNAV AQEMIQNMGH" gene complement(3756306..3758066) /locus_tag="Dhaf_3528" /db_xref="GeneID:7260546" CDS complement(3756306..3758066) /locus_tag="Dhaf_3528" /inference="protein motif:PFAM:PF00437" /note="PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mta:Moth_1554 type II secretion system protein E" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="YP_002459982.1" /db_xref="GI:219669547" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007831" /db_xref="GeneID:7260546" /translation="MNKIPLWTNRRKKDGDYEGFRDKWKQQISHEEGFGQYLLSRQKI DLGQLSRALGEQKETGARLGEILVRHKALTLEQLLLELGGYLGVTKVDLTQVDIDPKV ASLLSEQAACRYGAIPVGLKDRILQVAMFDPGNHHYVENIRILTGFEVEPLLADEAQV VTAIKKYLTVEKSIAELSGQDEQECKGIGRINTLDSEEGNDAPTIQLVDFLLRDAIML GASDVHWEPGKTVMRVRYRIDGKLETKRSFPLGVARNVLARIKIMSGMDVAERRLPQD GRSSFMVGAKTIDLRISSLPTVHGEKIVIRILDQDTAQRSLQSLGMSRGVEQSIQRLI KEPHGIILVVGPTGSGKTTTLYALLRELVSEQLNLVSIEDPVEYQLPGVVSVQVQPKI GLTFAQGLRSILRQDPDVIMIGEIRDEETARIAIAAALTGHLVLSTLHTNTAAEAFTR LLDMGIEPYLVAAVLRGVLSQRLVRRLCEQCKEPWHLDPLEKDAMDLPESVRQVFRAK GCPKCRGTGYSGRIGIHELLLYHQDIKDLVLEGQSSGAIEEKAIAKGMIPLRRDGYNK VRQGLTSLEEIWYSTSGIMR" gene complement(3758059..3758370) /locus_tag="Dhaf_3529" /db_xref="GeneID:7260547" CDS complement(3758059..3758370) /locus_tag="Dhaf_3529" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459983.1" /db_xref="GI:219669548" /db_xref="GeneID:7260547" /translation="MYVKVHSENKIVRREVNSRQAIYGAEGGIEWAKVMLEKDPAFMG GTIGIGEGTVKVNVLAGEKNYTVTSLAQYGRAQRILKAELAKIDEQWLIMKYQEIHEH E" gene complement(3758412..3758945) /locus_tag="Dhaf_3530" /db_xref="GeneID:7260548" CDS complement(3758412..3758945) /locus_tag="Dhaf_3530" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: drm:Dred_1044 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459984.1" /db_xref="GI:219669549" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260548" /translation="MQTIRWNQKERSGRVDQDRGFTLIEVLFALLITGILLGVALRFF YGEWNISQTLKDKMEAHYAVVTAGRWVSDAIREAESVQWTNRGKWTLTVTPSGENYSD QYYLDDKDYDGVKDLYRYHKGAHNPIVSGIVDWNCTQGVSGLWTITFQGQIGKQRVHW QGRIRARGGVNQGILPS" gene complement(3758980..3759363) /locus_tag="Dhaf_3531" /db_xref="GeneID:7260549" CDS complement(3758980..3759363) /locus_tag="Dhaf_3531" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: gme:Gmet_0734 N-terminal methylation" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459985.1" /db_xref="GI:219669550" /db_xref="GeneID:7260549" /translation="MNDYNEKGFVLLDVILALFLFTVGFAALYGLSEKALSEADQALR LTEAANHAQNIMETLGAESWRDNIRRGSCIPGGEVEGSEGFFRWRVYSDWDIPDELLR VKVEVSWLEQGSVQRYTLESLYALQ" gene complement(3759360..3759698) /locus_tag="Dhaf_3532" /db_xref="GeneID:7260550" CDS complement(3759360..3759698) /locus_tag="Dhaf_3532" /inference="similar to AA sequence:KEGG:Mmar10_2778" /note="KEGG: mmr:Mmar10_2778 general secretion pathway protein G" /codon_start=1 /transl_table=11 /product="general secretion pathway protein G" /protein_id="YP_002459986.1" /db_xref="GI:219669551" /db_xref="InterPro:IPR000983" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260550" /translation="MGNRCKEKGFTLLEVLLVLCLMMAIISIAAPRWGTAKNHTSTQA DLANRVLIEGAVELYKLDTGKLPEGIADLYAPPPGIEGWRGPYLRQRFTKPTDNEERY ELDEGGKVVP" sig_peptide complement(3759360..3759449) /locus_tag="Dhaf_3532" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.819) with cleavage site probability 0.698 at residue 30" gene complement(3759968..3761050) /locus_tag="Dhaf_3533" /db_xref="GeneID:7260551" CDS complement(3759968..3761050) /locus_tag="Dhaf_3533" /EC_number="4.2.3.4" /inference="protein motif:PRIAM:4.2.3.4" /note="PFAM: 3-dehydroquinate synthase; KEGG: mta:Moth_1555 3-dehydroquinate synthase" /codon_start=1 /transl_table=11 /product="3-dehydroquinate synthase" /protein_id="YP_002459987.1" /db_xref="GI:219669552" /db_xref="InterPro:IPR002658" /db_xref="InterPro:IPR016037" /db_xref="GeneID:7260551" /translation="MQGQRIDVASVKPYPVFLGARLEELGDYLTTRIGAGEHLLVITH PNVGDYYLDTLQKGLSSFMVNTLIVPQGEDEKSLDRLSDLTSEAIACGADRKTVVLAL GGGVIGDLAGFFASVFMRGMRYVQIPTTLLAMVDSSIGGKVAVNHAAGKNLLGDFYPP LAVWTDFSTLETLPWEEMLNGLAETIKHAVIADEELLSFIEKHQEEIMARKPELYKEL TSRSSAVKVRLVSEDETEQGKRMFLNYGHSFGHALEAEVAYQGITHGQGVSIGMVAAA HLAQERGLMNSGEVERLIKLLKAFGLPVTVRAKNPRVLTDLMGADKKNYKGQKVLVLP KGIGQGIVIRDANDEEILRAWDKVIE" gene complement(3761031..3761654) /locus_tag="Dhaf_3534" /db_xref="GeneID:7260552" CDS complement(3761031..3761654) /locus_tag="Dhaf_3534" /EC_number="2.7.1.71" /inference="protein motif:PRIAM:2.7.1.71" /note="PFAM: shikimate kinase; KEGG: hmo:HM1_0247 shikimate kinase" /codon_start=1 /transl_table=11 /product="Shikimate kinase" /protein_id="YP_002459988.1" /db_xref="GI:219669553" /db_xref="InterPro:IPR000623" /db_xref="GeneID:7260552" /translation="MNNFFEHEITSFNGDPSKNDALEEGEGLSGAAHNDNIVLVGFMG TGKSTVGRRLAKLLGREFIDTDLEIERLTEMTVSEIFRRHGETRFRSEERLLVKRLAE HKGYVIATGGGTVLNPENWRDLAQSGVIIGLYAPLDEIYKRIGYRNDRPLLRGDRQVV EELWAKRQPIYNQANWTIDTTHKGIEQVVEEIFSLYEGGSMDARTED" gene complement(3761656..3762804) /locus_tag="Dhaf_3535" /db_xref="GeneID:7260553" CDS complement(3761656..3762804) /locus_tag="Dhaf_3535" /EC_number="4.2.3.5" /inference="protein motif:PRIAM:4.2.3.5" /note="catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="YP_002459989.1" /db_xref="GI:219669554" /db_xref="InterPro:IPR000453" /db_xref="GeneID:7260553" /translation="MRYLTAGESHGPKLVGILEGVPSGAKIDKETIDQALQERQKGPG RGGRMKIEKDQITILSGVRGGLTTGAPIALEIINRDWANWEKIMAWGDEADLESRKVM TPRPGHADLTGYLKYRTEVRNVLERASARETAMRVAIGNIAVQILEALGVEIRGQVLS VGKVHMDSEDTPEYWQRVQASEWKVGDPKGEEALDAQLQEARSQGESLGGVLQIQVRN LLPGLGSYVQWDRKLDGRLAQAVLSVQAIKGVAFGMGFTAGQHFGSEVHDPIGYDSGR GYYRYSNNAGGIEGGMTNGEPVIIEAVMKPIPTLYSPLSTVNLETKEVMEASVERSDV CAVPAALVVLKHVAAWEILQAILEKFPADTWDELDKAWQDYKRFVSEQ" gene complement(3762816..3763292) /locus_tag="Dhaf_3536" /db_xref="GeneID:7260554" CDS complement(3762816..3763292) /locus_tag="Dhaf_3536" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: dvl:Dvul_1796 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002459990.1" /db_xref="GI:219669555" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260554" /translation="MRRKRQLKAGQSDKTRGFTLLEVLLVLTLLAGVGFVLLIKLPVQ MDNRNLSLASTQLIQELRDARAKAMAENTWYEIRLYPSNNTYRIFREGTLEKTITLPE KISFANQPSNIRFSAEGSPIFLGGPIKTGSISLTNGKHTRNVITALITGRVREEIK" gene complement(3763374..3764261) /locus_tag="Dhaf_3537" /db_xref="GeneID:7260555" CDS complement(3763374..3764261) /locus_tag="Dhaf_3537" /EC_number="1.1.1.25" /inference="protein motif:TFAM:TIGR00507" /note="KEGG: gtn:GTNG_2460 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein" /codon_start=1 /transl_table=11 /product="shikimate 5-dehydrogenase" /protein_id="YP_002459991.1" /db_xref="GI:219669556" /db_xref="InterPro:IPR006151" /db_xref="InterPro:IPR011342" /db_xref="InterPro:IPR013708" /db_xref="GeneID:7260555" /translation="MMTITEWENHSVVLSKSFGGVDLVKHFAVIGDPIAHSLSPVMHN AGYKALNLAADYQKFQVSPEDLGEAVLGLKALGFSGWNVTVPHKETILPFLDELTEEA VRAGAVNTVKVDKGRLIGHNTDGSGFVRSLQEHMELDERQQIVILGAGGAAKGIAMAL APFQAQLCIMNRTPERGAELVGKVLEWGGQAHQEEWGRGAWLVQADCVIQTTSIGLKK EEYPFSLAGIRPGTLVVDIIFNPWETPFLHSAKAMGCKTVNGIDMLLYQGVNAWEFWL EDKAPVESMRKALYQALAV" gene complement(3764274..3764804) /locus_tag="Dhaf_3538" /db_xref="GeneID:7260556" CDS complement(3764274..3764804) /locus_tag="Dhaf_3538" /inference="protein motif:TFAM:TIGR01668" /note="TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: HAD-superfamily phosphatase subfamily IIIA; KEGG: mta:Moth_1559 HAD family phosphatase" /codon_start=1 /transl_table=11 /product="HAD superfamily (subfamily IIIA) phosphatase, TIGR01668" /protein_id="YP_002459992.1" /db_xref="GI:219669557" /db_xref="InterPro:IPR006549" /db_xref="InterPro:IPR010021" /db_xref="GeneID:7260556" /translation="MFDLFKPTFQADSLDSIPMDVLKRNGIRGLIIDLDNTMTPWNDL EVGPKVVEWFEKLKVAGIQACVVSNNKRKQRVAVVAERLGIPFVFRATKPRRRAFQAG MNVLGTGISDTAVIGDQLFTDILGGNRMEMYTILVLPINDREFIGTRLLRRMERVLVW LMKRYETSEPHGTKVR" gene 3764949..3765845 /locus_tag="Dhaf_3539" /db_xref="GeneID:7260557" CDS 3764949..3765845 /locus_tag="Dhaf_3539" /EC_number="4.1.1.65" /inference="protein motif:TFAM:TIGR00163" /note="catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase" /protein_id="YP_002459993.1" /db_xref="GI:219669558" /db_xref="InterPro:IPR003817" /db_xref="InterPro:IPR005221" /db_xref="GeneID:7260557" /translation="MIKYYDRKTQTYQIEKVAGEKMIRWTYSSPVGMRLLETVVKKRM CSSFYGWYLDRRISRRKIHPFVCKFDLDLSIAEKNLKDFSSFNDFFYRKLKPSARSID PCQDSLISLGDGKLLAYEDINLDCLVQVKGLTYSLKELIKDPETASKYKRGTCLILRL CPTDYHRFHFIDSGICEPSHRIKGSYYSVNPVALQKVAKLFCENKREWSIFHSDHFGD ILTIEVGATFVGSIIQSYTPHQPVARGDEKGYFKFGGSTVLLFFEENKIKIDPDIVEQ TKLGYETYILFGEKIGVRHKGR" gene complement(3765883..3766218) /locus_tag="Dhaf_3540" /db_xref="GeneID:7260558" CDS complement(3765883..3766218) /locus_tag="Dhaf_3540" /inference="protein motif:PFAM:PF05437" /note="PFAM: branched-chain amino acid transport; KEGG: bsu:BSU26700 branched-chain amino acid transport" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport" /protein_id="YP_002459994.1" /db_xref="GI:219669559" /db_xref="InterPro:IPR008407" /db_xref="GeneID:7260558" /translation="MILTSQQSLVIIAVIALGTILTRGLPFLLFPSHKETPAFILYLG QVIPFAAIAMLIIYCLKNVSLLAAPYGLPEGIAIGFIIFIHLWKNNVLLSIGGGTVLY MALVQFVFA" gene complement(3766215..3767018) /locus_tag="Dhaf_3541" /db_xref="GeneID:7260559" CDS complement(3766215..3767018) /locus_tag="Dhaf_3541" /inference="protein motif:PFAM:PF03591" /note="PFAM: AzlC family protein; KEGG: bcl:ABC0851 branched-chain amino acid permease AzlC" /codon_start=1 /transl_table=11 /product="AzlC family protein" /protein_id="YP_002459995.1" /db_xref="GI:219669560" /db_xref="InterPro:IPR011606" /db_xref="GeneID:7260559" /translation="MELNGKSRGGEQPSMQDKIKALKAAFPYTLPVMTGYLFLGMAFG ILLNSKGYHFGWAILMSVFIYAGSMQYVAINLLTMAFNPLNAFIMTLMVNARHLFYGL SLLGKYSEAGRKKPYLVFGLTDETFSILCATNPPQGVNRGWFMFFVTILNHSYWIAAC ALGGILGSMVSFNTKGIDFVMTALFVVIFLEQWKSQKQHAPALIGLGASVLCLWVFGP EHFIIPAMAAIIGILSLFRKPLENLCKSEGVSMPDGAKTTPMAIKEEQV" gene complement(3767050..3767523) /locus_tag="Dhaf_3542" /db_xref="GeneID:7260560" CDS complement(3767050..3767523) /locus_tag="Dhaf_3542" /inference="protein motif:PFAM:PF01037" /note="PFAM: regulatory protein AsnC/Lrp family; KEGG: bsu:BSU26720 AsnC/Lrp family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_002459996.1" /db_xref="GI:219669561" /db_xref="InterPro:IPR000485" /db_xref="GeneID:7260560" /translation="MEINLDTQDKAIIHALQEDSSISNLELSKKIGLSPSACLTRTKN LKEQGVIKQYTAFVDEKKLGVELIAFTMVNLSPLNREIANHFLATINEIPNVLECYTV TGSRDFLLKVVAKDIATFRDFIIDTIMAIPGVDKVETSIVMNRDKCTLTIPIDQD" gene complement(3767765..3768676) /locus_tag="Dhaf_3543" /db_xref="GeneID:7260561" CDS complement(3767765..3768676) /locus_tag="Dhaf_3543" /EC_number="2.3.1.19" /inference="protein motif:PRIAM:2.3.1.19" /note="catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate" /codon_start=1 /transl_table=11 /product="phosphate butyryltransferase" /protein_id="YP_002459997.1" /db_xref="GI:219669562" /db_xref="InterPro:IPR002505" /db_xref="GeneID:7260561" /translation="MFARILSEVLKPPQRIAVAAAHDKPVLEAVFKAKELGAALPILV GDEGKIRRYAEEMGIDLADSPLVHEPNVRKAALYASNLVREGQADLLMKGMLQTAEIL KAVLDKEKGLRAGSTLSHIAIIEVPSLNRLLLITDAGMNIAPDIKQKADIIRNAVTVA RALGVEQPKVAALSALEVVNPDMPSTLDAAILTQMNRRGQIKDCLVDGPFALDNAVNA ERAEHKGIRGSEVAGQADILLVPNIETGNAIYKAATCLASFRSAGLVFGAKAPIILPS RADTPESKFLSILCAARVAAFKAGSNE" gene complement(3768680..3769768) /locus_tag="Dhaf_3544" /db_xref="GeneID:7260562" CDS complement(3768680..3769768) /locus_tag="Dhaf_3544" /inference="protein motif:TFAM:TIGR02707" /note="catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate" /codon_start=1 /transl_table=11 /product="butyrate kinase" /protein_id="YP_002459998.1" /db_xref="GI:219669563" /db_xref="InterPro:IPR000890" /db_xref="InterPro:IPR011245" /db_xref="GeneID:7260562" /translation="MAEPAVRILVINPGSTSTKIGIYENLTCVFDKTVRYHRAELEGY ASIMEQKELRRAFVLNSVQESGIPMTSLQAVVGRCGMVKPLESGTYLLDEHLVHDLTS EESMRHASSLGGVIAYEIGRQLSIPAYVVDPVTIDEMIPQARLTGIKAIARRSIFHAL NSKYVAKRFCRENQKRYEESRLIVVHLGGGISVSAHRNGRTIDVNDASAGDGPFGPER AGGLPVSAVVELCFSGLYTKETIFTQIMSKGGMQMLLGTNDLREAEKRIDQGDDYAQL VVEAMAYQVSKQIGAMAAALEGEVEGIVLTGGLAYSRRFVQLIDQRVRKMAPVTVYPG EDELQAMAEGAFAVLTGREQVKHYGVRR" gene complement(3769806..3770987) /locus_tag="Dhaf_3545" /db_xref="GeneID:7260563" CDS complement(3769806..3770987) /locus_tag="Dhaf_3545" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="KEGG: gme:Gmet_2213 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_002459999.1" /db_xref="GI:219669564" /db_xref="InterPro:IPR002155" /db_xref="GeneID:7260563" /translation="MQDVVIVSGARTPIGDFNGALKDFKAVDLGMIALKGALQKSNLE PAQIEEVIAGHVYQAGCKGNPARQVAMGVGCPVETVAATINQQCPSSMRATEMVSQEI MLGKIQIGAAVGIESMTNVPYLLLKARGGYRMGSDTLHDGLLYDALIDAFYNYHMGIT AENLAEMYGISREEQDEHALESHRRACRALKEGKLKEEIVPVEIVTKKETRLIAEDEH PREDVTLESFAKLRPAFQKEGTVTAGNASSLNDGAVALLLMSGEKAQELGFKPLARIV ATASASVDPKIMGFGVVPAVRRALNFARMDTKDIDLWEINEAFAAQFLACNRELKLDL DKVNVNGSGISLGHPVGMTGARLILTLIQEMKRRRNQYGCASLCAGGGPAMAVVVEAF S" gene complement(3771212..3771961) /locus_tag="Dhaf_3546" /db_xref="GeneID:7260564" CDS complement(3771212..3771961) /locus_tag="Dhaf_3546" /inference="protein motif:TFAM:TIGR02846" /note="sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment" /codon_start=1 /transl_table=11 /product="sporulation sigma factor SigK" /protein_id="YP_002460000.1" /db_xref="GI:219669565" /db_xref="InterPro:IPR000943" /db_xref="InterPro:IPR007050" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR014209" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7260564" /translation="MLTEILVASIALTVLKGVTLLVSYINNNAFPHPLNEQDEAHYLK VLRASKSPEATPKDLTKAEYARNKLVEHNLRLVAHLVKKFDGTGEDSDDLISIGTIGL IKGIDTFDPGKGTKLATYAARCIENEILMHLRSLKKSRGEVSIYDPIGVDKEGNEISL MDVLASEGEAISDRIENEFEQRVLLDKVKNLTRRERLVLQLRYGLMNSPRRTQREIAK ALGISRSYVSRIEKKAIQKLMEQMEDHDPKK" gene complement(3772167..3772769) /locus_tag="Dhaf_3547" /db_xref="GeneID:7260565" CDS complement(3772167..3772769) /locus_tag="Dhaf_3547" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_1631 peptidoglycan-binding LysM" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460001.1" /db_xref="GI:219669566" /db_xref="GeneID:7260565" /translation="MSKESRQVFLLVVLLVVGVSYAYYTYLFTPKWADIQTLKGMYQE RQSRYELLLGYSGQEAYLSAEIKNLEKQSEELWKQIPSAIHKPDIVVELYTIAKQNQV EPLHVSFGETQGEKDYIAQRLVLNCRGSQEQITKLINDLQSANDQRFTLASLNFVHSE GVLNGEIHLIAYASTVKPAAKKVLDEDYMTEEQQRNPNDG" sig_peptide complement(3772167..3772235) /locus_tag="Dhaf_3547" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.958) with cleavage site probability 0.956 at residue 23" gene complement(3772816..3773358) /locus_tag="Dhaf_3548" /db_xref="GeneID:7260566" CDS complement(3772816..3773358) /locus_tag="Dhaf_3548" /inference="protein motif:PFAM:PF05137" /note="PFAM: Fimbrial assembly family protein; KEGG: ckl:CKL_1115 hypothetical protein" /codon_start=1 /transl_table=11 /product="Fimbrial assembly family protein" /protein_id="YP_002460002.1" /db_xref="GI:219669567" /db_xref="InterPro:IPR007813" /db_xref="GeneID:7260566" /translation="MRERVQLNFAQRWRVRLKAPQRAARNKRVRIALGVLAGLVCIVL GSLPWVYEYELNTELAVLNQRIAALQEIDGKVYQVQALEEQLGLQEKVLDFVGGQRKN PGEVLDRLKESLPAGAILENVTLNQDNTLRASISFLSPVDAANFWSAMNVSQYFETQD IGALSLKDERQTIVMDFKLR" gene complement(3773359..3774420) /locus_tag="Dhaf_3549" /db_xref="GeneID:7260567" CDS complement(3773359..3774420) /locus_tag="Dhaf_3549" /inference="protein motif:COG:COG4972" /note="KEGG: cno:NT01CX_1603 fimbrial assembly protein, putative" /codon_start=1 /transl_table=11 /product="Tfp pilus assembly protein ATPase PilM-like protein" /protein_id="YP_002460003.1" /db_xref="GI:219669568" /db_xref="GeneID:7260567" /translation="MIRKKKWVALVHGQHWTVAKVSRHGNKLKIHGLFEYRGEGLAPE GMNMVTEQEEVLGQTQAGQGAALGLRGLKQWADKERIPLKKLNYALSCPGVITRMITL PILSYKDLEKLLTEQVDQYFTLNISDYLVDYRILERIKEEDQERLRVLLVAIPFSEWS KQWQIWEQLGVTPKVTDFAADSLCRLYSRLSKWEENKRQASARDLAVVDLGADRVEFV LLEHGVLFLYSDMGISLDGLNEQDEAKERTEGVDGADRVYQSELEDNLVPVFNALSEF LNFFASRHYGKTADQIFITGECADFPGLEEIFERNMGIQAKVGFPGDWMPVFNKKSRH LVNQGIKYGSLYGLAFRED" gene complement(3774462..3775772) /locus_tag="Dhaf_3550" /db_xref="GeneID:7260568" CDS complement(3774462..3775772) /locus_tag="Dhaf_3550" /inference="protein motif:PFAM:PF02368" /note="PFAM: Ig domain protein group 2 domain protein; Carbohydrate-binding family V/XII; KEGG: sun:SUN_0956 hypothetical protein" /codon_start=1 /transl_table=11 /product="Ig domain protein group 2 domain protein" /protein_id="YP_002460004.1" /db_xref="GI:219669569" /db_xref="InterPro:IPR000209" /db_xref="InterPro:IPR003343" /db_xref="InterPro:IPR003610" /db_xref="GeneID:7260568" /translation="MDSDVLGGIGMKERGAALITVVMAMLVITMISGVFFFLVRSNMK LVNSEQGAILANNLADAGIQYGISLLLVDEIKAGDEPFSLEDLPSLANPPSDPLNNGG DFDIWWENGSEANSFIIFSRGSYGKITRTKTAGFTIGTEGVGGGEGSGGPGGGEPAYP YWDLNHRYIEGDYVVYSVMIDGRSVERLYRARHNGYVGELPGAPWTTWQEITNHYRVS NFYELINGNTIIYYGSTYWQARWNGHGTGNEPGKNTERSSGMWRELIDEWRPYEAYPE KEVVSYNGKRYRVKWNNPQGPPDASDPNGPWELLEDCVTLQSVVISPSSMIIKEGEKV TFRATALFSDGTTEDVTSKVIWSSTYPQIASISGNVLTGVMDTGVEGCNATLVSASYT YNHQERSDIVINRVGVTEIKVSESHEGDEDSGLIIWEREVLSGP" gene complement(3775754..3776308) /locus_tag="Dhaf_3551" /db_xref="GeneID:7260569" CDS complement(3775754..3776308) /locus_tag="Dhaf_3551" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cyb:CYB_0475 general secretion pathway protein G, putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460005.1" /db_xref="GI:219669570" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260569" /translation="MNKQREEGFTILEVMIAIVIFGILMMIISQLMRGEIRMLNTASG QDAIQQKARSAMVHLLDEVRLNRYVAYYAGDTAEGGRHNEGVYANEPGGTSRCLINIR PVPDVLNGDMSKLPGGTEIYYDYWDKKLWYRDTSTNEVHLIADEIDALTIQPLTEHLL QIHLKARSTSGTYEQELLTWIRMY" gene complement(3776305..3776661) /locus_tag="Dhaf_3552" /db_xref="GeneID:7260570" CDS complement(3776305..3776661) /locus_tag="Dhaf_3552" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460006.1" /db_xref="GI:219669571" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260570" /translation="MEGKSREQGMTVLEVAVALTILMIGVGFVLQSDAVSHKYAYRSQ VREQMLFYAAGVLEAEMEGVTPAVTIPGFTDFVPVMTTHRVNDHLEKIEVKVSLRNSP TDPEPVVLATYRVIRE" gene complement(3776691..3777206) /locus_tag="Dhaf_3553" /db_xref="GeneID:7260571" CDS complement(3776691..3777206) /locus_tag="Dhaf_3553" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sat:SYN_01761 pilin assembly protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460007.1" /db_xref="GI:219669572" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260571" /translation="MPWMPDLGNRNAERGFTLIELLIVITVIGIIMAFGVPKYQGVRE QYRLESSAQAVMAELKYAKQLSMDRRKSIYVLLTAERVSLFESVSSPGVAVESYGFDM GVVFKPDDADNLWLPEIRLGSGETLGHGLFYDHRGFVSQSGTIWLEAGSGRRVGIQIE KKTGHLFMVWP" gene complement(3777222..3778427) /locus_tag="Dhaf_3554" /db_xref="GeneID:7260572" CDS complement(3777222..3778427) /locus_tag="Dhaf_3554" /inference="protein motif:PFAM:PF00482" /note="PFAM: type II secretion system protein; KEGG: ckl:CKL_1114 ExeF3" /codon_start=1 /transl_table=11 /product="type II secretion system protein" /protein_id="YP_002460008.1" /db_xref="GI:219669573" /db_xref="InterPro:IPR001992" /db_xref="InterPro:IPR003004" /db_xref="GeneID:7260572" /translation="MRFKYKVIDEQMSVAEGTLEAADYEAARRMIQENGWQVISLLEP RGLNALLNKRIMTKVKYESISAFCSQLAMMVRSGANLVRGLEVLKLQLEDKELQEVLE IIVRGVSRGDSLSQAMRDCRGALPDLLINLVAVGEESGNLESVLTSMAEYYDRENYIR KKVQSASIYPVILLTVLIGIIFFFMNFLLPEITGMLTESGQSLPLPTRMIINTADFFS NYGIYLLAGLIGLVFGLNWLFKIPKYRYYRDALMLGMPILGINIKNIVISRFSRTFAL FLHSSIPMVPILNSMETIVGNEVSRTGIARIRERIIKGEPLTQAFGQEKFFDPLVVQM ISIGEETGRLEEMLEEVADLYDKKVELGIARMISLVEPVFTVIIGIFAGGMIIAIALP IFSMATGTQ" gene complement(3778471..3780192) /locus_tag="Dhaf_3555" /db_xref="GeneID:7260573" CDS complement(3778471..3780192) /locus_tag="Dhaf_3555" /inference="protein motif:PFAM:PF00437" /note="PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ckl:CKL_1113 ExeE1" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="YP_002460009.1" /db_xref="GI:219669574" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007831" /db_xref="GeneID:7260573" /translation="MAIRQERKRLGEILIAGGALMEEQLNEALKLQKSLGLRLGEVLI RQNFVSEEEILRTIQRQLGLPAVDLNRIFVTEKILKMIPESVARKYTVLPVDFTNGQL LVATSDPTDYYAIDDLRLASGMMVKPCVARKADILRAIDRFYGRSEAEKAVSDFVRQK GHDQVAAAAQTPVLTVVQAGGETADEEATPIIKFLNTIIENAVNNFASDIHIEPVDDE LRVRFRIDGVLREIMRTPVGMTGPVVSRVKIMADLNIAERRLPQDGRITYLVGRKMID LRVSTAPTMYGEKVVLRILDKGSVILEKASLGLQGHNLELFDELIAKPYGIVLVTGPT GSGKTTTLYTALNQLNTPEKNIITLEDPVEYNFKGVNQMQVNPKAGLTFAKGLRSILR QDPDIIMVGEMRDNETAEIAVRSALTGHLVLSTIHTNDAPSAVTRLVDMEIEPFLISA SVVGIISQRLVRKICPNCVQEYPAELKDYAFLGLSQDFPLKLRRGTGCPYCHDSGYKG RTAIFEIMPIYGGHRNLISRGATADELREYAISQGMITLKKSATDLVLNGVTTIEELL RVTYVNE" gene complement(3780340..3780801) /locus_tag="Dhaf_3556" /db_xref="GeneID:7260574" CDS complement(3780340..3780801) /locus_tag="Dhaf_3556" /inference="similar to AA sequence:KEGG:CKL_1112" /note="KEGG: ckl:CKL_1112 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460010.1" /db_xref="GI:219669575" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR002416" /db_xref="InterPro:IPR012902" /db_xref="GeneID:7260574" /translation="MFKRRKDGGFTLIELMIVIAVIGILAVVLVPKMSGVKDSAKAAG VVTNAKSVEAYVAANIDRWSRASDQDGTAISDLTAQFVGTTSPATNPKEKLNNPLAPT TAAVSVGATATASTGVVAIDVAESPFKITITGYANGTSTADVVYKNDISPN" gene complement(3780984..3781214) /locus_tag="Dhaf_3557" /db_xref="GeneID:7260575" CDS complement(3780984..3781214) /locus_tag="Dhaf_3557" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hmo:HM1_0537 peptidase, U32 family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460011.1" /db_xref="GI:219669576" /db_xref="GeneID:7260575" /translation="MNREIPYADSDVLIKAQVPRSEIQMLVKYVEGLGHLGVVTTTDR HAGEVLIQTTKYTWPDLKKALEGMPFEVAFKN" gene complement(3781272..3782564) /locus_tag="Dhaf_3558" /db_xref="GeneID:7260576" CDS complement(3781272..3782564) /locus_tag="Dhaf_3558" /inference="protein motif:PFAM:PF01136" /note="PFAM: peptidase U32; KEGG: pth:PTH_1069 collagenase and related proteases" /codon_start=1 /transl_table=11 /product="peptidase U32" /protein_id="YP_002460012.1" /db_xref="GI:219669577" /db_xref="InterPro:IPR001539" /db_xref="GeneID:7260576" /translation="MLEQNQSRKPELLAPAGDYEKLKFAIAYGADAVYMGGPAFGLRA YAGNFTMEQMAEAIQYTHHAGRKLYVTVNIFAHEQDFEEMAAYLKQLESLGADGAIVS DPGIIALAQEAAPKLPLHLSTQMNSTNSYSINFWLKQGLERIVLARELTLAEIRAVRE KVPGELEMFIHGAMCMSYSGRCLLSNYLTGRDANRGECTQPCRWGYGLVEEKRPGQVF PVEEDERGTYIFNSHDLCLLPYLPMLKPLGIDSYKIEGRMKSIHYVSSTVKVYREAID TLWEQGEEAFKAKLSSWLEEMDKVSHRDYSPGFLFGKPGAESHNIESSNYIRDYEFVA FGLAADNREHPQIPTLVKDEFSQGYWVEQRYHFQKGELIEVFSPHEEPWTFEVKGIHT VEGEEVDVARHAKEILKLELPRPLPPFAILRRAKKDKK" gene complement(3782708..3783733) /locus_tag="Dhaf_3559" /db_xref="GeneID:7260577" CDS complement(3782708..3783733) /locus_tag="Dhaf_3559" /inference="protein motif:PFAM:PF02618" /note="PFAM: aminodeoxychorismate lyase; KEGG: hmo:HM1_0536 hypothetical protein" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate lyase" /protein_id="YP_002460013.1" /db_xref="GI:219669578" /db_xref="InterPro:IPR003770" /db_xref="GeneID:7260577" /translation="MGRRWLKGLLSTLFIMAVLAGAGIAAWWNWASQPYAEEGSNAAE VQFMITPGMNASQVAQELEHQGLIRNALAFRFLASQQNVDSKLLAGEYQLSAQMPPQE MINKILEGPDVHTVKVTIPEGYTTAQIIDLFVKNDLGSKEDYQRVIESEPFSYSFLAD IPAGPNRLDGFLFPDTYFFAPEAGPKENINRMLKRFEQEITPEVMTKLAEMNLTLREW VNLASIVEKEAGKDADRPIIAGIFLNRLKIDMALQSCATIQYVLGTQKYILSLEDIQV ESPYNTYKYPGLPPSPIASPGHASLDAVLNSTDSDYLYFLATPSGETIYAKTHQEHLQ NQAKYMN" sig_peptide complement(3782708..3782785) /locus_tag="Dhaf_3559" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.759 at residue 26" gene complement(3783875..3785182) /locus_tag="Dhaf_3560" /db_xref="GeneID:7260578" CDS complement(3783875..3785182) /locus_tag="Dhaf_3560" /inference="protein motif:PFAM:PF04294" /note="PFAM: VanW family protein; KEGG: pth:PTH_1067 hypothetical protein" /codon_start=1 /transl_table=11 /product="VanW family protein" /protein_id="YP_002460014.1" /db_xref="GI:219669579" /db_xref="InterPro:IPR007391" /db_xref="InterPro:IPR011098" /db_xref="GeneID:7260578" /translation="MSLRWKYCSYFLILALLALTGCTMNEARLLNLTPEAVSRDPNQL PPGIVLDDLELGGMMQEEAKEKIRSWSKDKLEENLFLVYNETEIQLTPEELGITLDFE RTWQNLLENTGQENQSVLAIDYVMANQVLHEKLAEFNRSAVDASFKIENDQFKITPAI SGEAINVDAFFDEIKEVSLGDLPKRISLTGVEIPAAVTTESLEALAFDGVIGEYTTKY NAGDKNRTANLITAAKKMDKAVLKPGETFSFNGTIGPRTAETGFKDAYIVINNEYVKG IGGGICQVSSTLYNAALLANLSIVERHPHAVVVAYIPLGQDATINYPNLDLKLRNDSS SYLYFRTKVEAGNLTIKIYGKKTGVKVRFEKEIEKELNYHTVRKIDPDLLPGAVIQQQ SGSKGYIVKTWKIVTDAQGKETRQLLSRDSYAPTNRILKIGAD" sig_peptide complement(3783875..3783952) /locus_tag="Dhaf_3560" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.805) with cleavage site probability 0.468 at residue 26" gene complement(3785321..3785626) /locus_tag="Dhaf_3561" /db_xref="GeneID:7260579" CDS complement(3785321..3785626) /locus_tag="Dhaf_3561" /inference="protein motif:PFAM:PF06949" /note="PFAM: protein of unknown function DUF1292; KEGG: pth:PTH_1066 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1292" /protein_id="YP_002460015.1" /db_xref="GI:219669580" /db_xref="InterPro:IPR009711" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7260579" /translation="MTEHTHGPNCDHEHDVEEFDTIILTDDEGNDHEFLHLDTLEVEG STYFVLMPISAEEDEEADEAIILKLGKDAEGNEMLLDIEDDEEWEKVADAWESMEEE" gene complement(3785713..3786141) /locus_tag="Dhaf_3562" /db_xref="GeneID:7260580" CDS complement(3785713..3786141) /locus_tag="Dhaf_3562" /inference="protein motif:PFAM:PF03652" /note="similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase-like protein" /protein_id="YP_002460016.1" /db_xref="GI:219669581" /db_xref="InterPro:IPR005227" /db_xref="InterPro:IPR006641" /db_xref="GeneID:7260580" /translation="MRIMGLDFGERTIGVAVSDAMLLTAQGVKTIRRSPKELEELKTM LQDYEVDHIVLGYPKNMNGTLGPRAQATEEFAQILKEEFGLPVTLWDERLSTMGAQRS LLEADVSRAKRKQVIDKMAAVFILQGYLDYIRQKNGQNKE" gene complement(3786173..3787120) /locus_tag="Dhaf_3563" /db_xref="GeneID:7260581" CDS complement(3786173..3787120) /locus_tag="Dhaf_3563" /inference="protein motif:PFAM:PF00248" /note="PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_1641 aldo/keto reductase" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_002460017.1" /db_xref="GI:219669582" /db_xref="InterPro:IPR001395" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260581" /translation="MGWHGPLVSEVCFGSLAISPLQGRVSLAEGVNVLRYALEQGIDW IDTAEIYDNYSQIAQALQHHPEVKLVSKSYSVTAQEMSASIEKARRELNRDVIDFFLL HEQESALTLKGHQGAWEELRKAKGDGRVKYIGISTHAVDAVKAGALLPDIDVIHPIIN HQGLGIIDGTLEEMLAAIRFASELGIGIYAMKIFGGGHLAAHPQEALDFIRSIPWIQA MALGMSSVEEVDFNLKYLAGQEISEELRQSVTYRERKLYIADWCQGCGRCCEACPQSA LSLEEVVGGGMVQAVVEAGQCVLCGYCGRVCPHFCLKIV" gene complement(3787193..3787444) /locus_tag="Dhaf_3564" /db_xref="GeneID:7260582" CDS complement(3787193..3787444) /locus_tag="Dhaf_3564" /inference="protein motif:PFAM:PF06135" /note="PFAM: protein of unknown function DUF965; KEGG: pth:PTH_1063 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460018.1" /db_xref="GI:219669583" /db_xref="InterPro:IPR009309" /db_xref="GeneID:7260582" /translation="MDRLEHTMMFKSQGGDVSPQEILQQVYVALEEKGYDPINQLVGY LMSGDPVYITSHNQARSLIRKLERYELLEELVRSYLQEK" gene complement(3787542..3790169) /gene="alaS" /locus_tag="Dhaf_3565" /db_xref="GeneID:7260583" CDS complement(3787542..3790169) /gene="alaS" /locus_tag="Dhaf_3565" /EC_number="6.1.1.7" /inference="protein motif:TFAM:TIGR00344" /note="Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="YP_002460019.1" /db_xref="GI:219669584" /db_xref="InterPro:IPR001424" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR002318" /db_xref="InterPro:IPR003156" /db_xref="InterPro:IPR012947" /db_xref="GeneID:7260583" /translation="MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMV PFKPYFMRKVEPPFPRATTSQKCVRTPDLEVVGKTARHHTFFEMLGNFSFGDYFKAEA IPWAWEFVTEVLKLPIDQLWITVHPEDEEAKNLWIEKTGVSPERIKYDPENLWAAGPV GPCGYCSEIYVDLGESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDESGLLTPLPKQ NIDTGMGLERIASVMQGAASNFDTDLFLPIINKVSELSGIPYHDSPKNDVAMKVVADH TRAVSFMLSDGIRPGSEGRGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQRDYSHH YPELKENENFILNHLRLEEKNFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYE TYGFPVELTEEMLIEQGMSVDMETFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKA LGTTPFLGYHELAAHTRVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSG LIRSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSAT HLLQSALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNKAVLANMP VAAEEMSLDAAKASGATALFGEKYGDTVRVVSMGDYSLELCGGTHIHATGDIGLVKII SESGIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKD LEKEVQQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKD GVLVLGAAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGGGGRPDMAQAGGKDA AKLGEALDQVPGIIKSHIK" gene complement(3790593..3792779) /locus_tag="Dhaf_3566" /db_xref="GeneID:7260584" CDS complement(3790593..3792779) /locus_tag="Dhaf_3566" /inference="protein motif:COG:COG5184" /note="KEGG: mxa:MXAN_0889 RCC1 repeat domain protein" /codon_start=1 /transl_table=11 /product="Alpha-tubulin suppressor and related RCC1 domain-containing protein-like protein" /protein_id="YP_002460020.1" /db_xref="GI:219669585" /db_xref="InterPro:IPR000408" /db_xref="GeneID:7260584" /translation="MKLMVMLILLTLLSGGCADQQVQQQKIVQIACGNDFSLFLYDTG KVRAIGKNSSGQLGVGDTEDRYELTEVLLPEAVSEIGVSDDSAFALTQDGTLYTWGDN RCRQAENSAEPAVPTPIRYQIKEQEKVTQFALGWYASYGLTESDVLYGWGSKLGLVTL EDLNYEPIYQAVPLPQSRAFPIVDGKENKRYIPPKISKIDISNYTIMGIGDDGTFFGP VGENIFGAIPYTPGEIVKIAAGRLFCVLLTAEGSLYLWGDNFRGELASGDYQLRKVPL FRSFAEDPLRDVAVGPSHILALTRSGKVLAWGDNARNQLGLADRKEVLSPENIAFPEK ITLIATGFHHSDALGESGKLYAFDANDYGQLMTGDQTSRDTPTVADLQSVVANPDPVI IPEFSQEVAIAATMEAFLTESGRVFTKGPGDMGTLGTATANSHEEPTYVPMSEAITQI EAGLFTFTVLTAKGEVYNWGLSQLNSLGHDHKENKWYLTPTQVPLPEKITKIRSDMYS TGALAESGNWYMWGDNTYGSLATGTKDYAAGPVKLETPVPFAELFPSRSYWLALTAEG EVYQWGTWQNKFAEEMYMPDVQTQDLKYQKIALPEKVIKAKSTAYDNFVLSATGNLYA WGFRFKQEPQIFLENVQDFVVSPRESDFLALTHDGKVYYWGYNLMEPYIPVEIHYPEI IRTVFPGEGIFYAAGEEAMYMVYDTWIQEGMKTNEFLVKVDYRYKK" sig_peptide complement(3790593..3790655) /locus_tag="Dhaf_3566" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.568 at residue 21" gene complement(3793836..3794402) /locus_tag="Dhaf_3567" /db_xref="GeneID:7260585" CDS complement(3793836..3794402) /locus_tag="Dhaf_3567" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: chy:CHY_1877 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460021.1" /db_xref="GI:219669586" /db_xref="GeneID:7260585" /translation="MNYKKYTLFLILSIFVAFISGCNKHTNEIEPVSVTESHYYSLMH SVFNFEYHNKLWEYQNVVEHALKAKTALDLSYLHGLLEGYTYDNAQIILLINSTNKPN MPQTFDKIVVTELQESAVTVIVELNEYLKNLVKETEEIESLKSRHEELMTISELLDEI SYIELDKATKDQIEIYKVNSQKIMDIIN" sig_peptide complement(3793836..3793910) /locus_tag="Dhaf_3567" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.910) with cleavage site probability 0.772 at residue 25" repeat_region complement(3794439..3796032) /note="ISDha2" gene complement(3794609..3795853) /locus_tag="Dhaf_3568" /db_xref="GeneID:7260586" CDS complement(3794609..3795853) /locus_tag="Dhaf_3568" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: drm:Dred_1795 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002460022.1" /db_xref="GI:219669587" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7260586" /translation="MQDKDTTHSTFMQAFQPLFSKDLWKDIHQQVPDLDRRTQKLKTN QLTLLISNAQLQEYRALRKISTSVLSDNLGQAIGLKSISHSQISRRLKTLPTKVSEML FRRTLHKVAQKQGYGKIRQQLGKLYMIDASTISLCLSRYPWAVFRKSKAGVKIHLRLS FDGIALPDEVVITPAKIADRKKLDELIVEDKDALNIFDRGYVDYELFDDYCEKGIRFV TRLKNNAIMEFTGVERPVEEDGIIEEDVDIILGTGSRKMKHTLREVTIDDTINEPFTI LTNDFELSAEELGEIYRYRWQIELFFKWLKQHAQIKHFYGTSETAVTNQILLALMTYC SLMLLKLEVEYPRDLLTLQRLLITCLFESYEEFLEKLRRRRRKAAKRINHEKIYQMTE HYIITEEDTGWLNDLIYDPVIL" gene complement(3796099..3796920) /locus_tag="Dhaf_3569" /db_xref="GeneID:7260587" CDS complement(3796099..3796920) /locus_tag="Dhaf_3569" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: csc:Csac_0847 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460023.1" /db_xref="GI:219669588" /db_xref="GeneID:7260587" /translation="MKKTATLMLATFLLFFMSFPVSAEIISKNNLPELVDEISKLDSQ NINNENIADLSQKVNSLTDKEFDDFIVAYLTGDKEFTKIDNLLKVGIIIQPPKKADEK IITQGFEARDLNIYVTATKRIGDPFYRLLAYYKPSAAEQFPASYDSITLSWDSSKGDF YSYNTSNSNYNSLKSPAGAYNGTLVFNSYDYRYSILTPEQYVAAYVTPIASGYLDFAV EYQHSFTNFTFSGTLDPSVTFSGLGIVKGSIGAKINWAPQETIWYKSDINAVNLP" sig_peptide complement(3796099..3796170) /locus_tag="Dhaf_3569" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 24" gene complement(3797160..3797600) /locus_tag="Dhaf_3570" /db_xref="GeneID:7260588" CDS complement(3797160..3797600) /locus_tag="Dhaf_3570" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_0732 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460024.1" /db_xref="GI:219669589" /db_xref="GeneID:7260588" /translation="MRKRGITAVLLAVLLVSSIPSAILADERTSWTQAANGGIIQPYW TYLQKYQNDFYIEPNGIALVEVIASARNGDEIRIEADLQQYRNGNWTSVKNWSKTSAG ASCGLSETWYVMSGYSYHMASSVKVYKNGVMVEQSSYVSPTYSY" sig_peptide complement(3797160..3797237) /locus_tag="Dhaf_3570" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.964 at residue 26" gene complement(3797694..3798431) /locus_tag="Dhaf_3571" /db_xref="GeneID:7260589" CDS complement(3797694..3798431) /locus_tag="Dhaf_3571" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: csc:Csac_0468 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460025.1" /db_xref="GI:219669590" /db_xref="GeneID:7260589" /translation="MNKPLSPKEAAQEKMMDALMEYAANCYKDHMLDTIDAEKEKFYQ ENTFPPELDVRMKKFFRRRQLKEDFLQAGKKGSQILAKVAVVFLAVCLSLGVLAATSE AARVKILNFLIEAEDEFTKIRFLPGPEKEGVPEHLGNVYIPEYIPSGFKIVNTETYSS TKIIYYANEQGEQIEFNQYTSETMELMIDTEEAQVGKVLIHGVEGLISEKEGFTTIVW HDQEHSFYLASEIEREELIKMAKSVGK" gene complement(3798424..3798950) /locus_tag="Dhaf_3572" /pseudo /db_xref="GeneID:7260590" gene 3799249..3799527 /locus_tag="Dhaf_3573" /db_xref="GeneID:7260591" CDS 3799249..3799527 /locus_tag="Dhaf_3573" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: tde:TDE0506 DNA-damage-inducible protein J, putative" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_002460026.1" /db_xref="GI:219669591" /db_xref="InterPro:IPR007337" /db_xref="GeneID:7260591" /translation="MAQTNINIRMDENLKQDFDRLCGELGLTMTTAFTIFAKTMVRQN GIPFPVSLDMPNEETLAAINEIQRMKQKPNKKLYSNFSELLREVETDV" gene 3799520..3799792 /locus_tag="Dhaf_3574" /db_xref="GeneID:7260592" CDS 3799520..3799792 /locus_tag="Dhaf_3574" /inference="protein motif:TFAM:TIGR02385" /note="TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: swo:Swol_1075 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module toxin, RelE/StbE family" /protein_id="YP_002460027.1" /db_xref="GI:219669592" /db_xref="InterPro:IPR004386" /db_xref="InterPro:IPR007712" /db_xref="InterPro:IPR012753" /db_xref="GeneID:7260592" /translation="MYKIFPSTQFKKDLKLVLKRGYNMNLMDEVVTTLAQGRTLPDKY RDHALKGNYEGCRECHITPDWLLVYELTENELILYLTRTGTHSDLF" gene complement(3799949..3800983) /locus_tag="Dhaf_3575" /db_xref="GeneID:7260593" CDS complement(3799949..3800983) /locus_tag="Dhaf_3575" /inference="protein motif:PFAM:PF01594" /note="PFAM: protein of unknown function UPF0118; KEGG: hmo:HM1_1869 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0118" /protein_id="YP_002460028.1" /db_xref="GI:219669593" /db_xref="InterPro:IPR002549" /db_xref="GeneID:7260593" /translation="MKKEKWRWIFLIIIVLLGLLLILSVRPILSPFMLAFVLAYLLAP VVEALVRRGVGRKISIALVFVGILLSLALLIFIVIPKLYIELSKLSQVLPETVRTLEL VIQDFRANFRATGLPHQVVSVLDEHLSEGESFLIHWLEEFLDNLPKALTSMSLFILSP VIAIYLLADWQRLQAGFLRLVPQRKRVAWQRVVQDISHIVRSFIRGNVIVALIVGILT GVGVKLVGMDYALLIGVICGVFDLIPYFGPLIGAVPSVLLGLIQSPMMALKVAIVILI VQQLESSIISPKLMGDSVGLHPLWIIFALLAGGEIAGFWGMLFAVPFAAVLRVIIRHI YFWLVSPEMK" sig_peptide complement(3799949..3800068) /locus_tag="Dhaf_3575" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.917 at residue 40" gene complement(3801259..3801390) /locus_tag="Dhaf_3576" /db_xref="GeneID:7260594" CDS complement(3801259..3801390) /locus_tag="Dhaf_3576" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460029.1" /db_xref="GI:219669594" /db_xref="GeneID:7260594" /translation="MRSGQVIGGIVAGSILGMTVGYMMRPKNKAASMMRKGMKMMKF" gene complement(3801414..3801608) /locus_tag="Dhaf_3577" /db_xref="GeneID:7260595" CDS complement(3801414..3801608) /locus_tag="Dhaf_3577" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pth:PTH_1057 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460030.1" /db_xref="GI:219669595" /db_xref="GeneID:7260595" /translation="MNCPVCSGRAIGKVGVGQFYCWDCCVEFTSAMDKVVIYDLAEDG SLVAWNDPAIGEELSEAALE" gene complement(3801605..3802099) /locus_tag="Dhaf_3578" /db_xref="GeneID:7260596" CDS complement(3801605..3802099) /locus_tag="Dhaf_3578" /inference="protein motif:COG:COG3881" /note="KEGG: cth:Cthe_3197 PRC-barrel domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460031.1" /db_xref="GI:219669596" /db_xref="GeneID:7260596" /translation="MRRTREIVGLPVLCLKNGNQVGWVKDVVFDESSRKISGILLESA HIFHSEKGLPREVVAAVGKDALTVRDHVVQRLQGVKWSQKVGNQVFTQGGEAKGTIED VFLDDSAENIVGFEVSDGLFSDLLDGRGAILQADVMVDGKDVLIVEDQVSPWDQGNEG GSLS" gene complement(3802251..3803363) /gene="mnmA" /locus_tag="Dhaf_3579" /db_xref="GeneID:7260597" CDS complement(3802251..3803363) /gene="mnmA" /locus_tag="Dhaf_3579" /EC_number="2.1.1.61" /inference="protein motif:PRIAM:2.1.1.61" /note="catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs" /codon_start=1 /transl_table=11 /product="tRNA-specific 2-thiouridylase MnmA" /protein_id="YP_002460032.1" /db_xref="GI:219669597" /db_xref="InterPro:IPR004506" /db_xref="GeneID:7260597" /translation="MTLTEKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSG GPDDVGGCCSITAIDDARRVAHQLGIPHYVLNFRTIFEENVIDYFTNAYLSGETPNPC TMCNRVVRWGEFLRKARALGADYLATGHYAKILQDPDSGRYLMSRPVDTWKDQTYMLY NLTQDQLKHTLFPLADYKKEHIREMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRER SPDKIKPGNFVDRQGNILGRHQGLINYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILG EDQEVYAHTLLATDLNWIAITGLEGPLTVQAKIRYKAPLAEAKIIPLKDSETLPGAIG PVVRVEFTTPQRAITPGQAVVFYQGDLVVGGGKIIT" gene complement(3803375..3803749) /locus_tag="Dhaf_3580" /db_xref="GeneID:7260598" CDS complement(3803375..3803749) /locus_tag="Dhaf_3580" /inference="protein motif:TFAM:TIGR03419" /note="TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: mta:Moth_1651 nitrogen-fixing NifU-like" /codon_start=1 /transl_table=11 /product="FeS cluster assembly scaffold protein NifU" /protein_id="YP_002460033.1" /db_xref="GI:219669598" /db_xref="InterPro:IPR002871" /db_xref="InterPro:IPR017787" /db_xref="GeneID:7260598" /translation="MYTEKVMDHFMNPRNVGEIEDANGVGEVGNAKCGDIMRIYLDVE GDIIKDVKFKTFGCGAAVATSSMVTEMVKGKTIEEALKITNAAVAEALDGLPPAKMHC SNLAADALHEAIKNYHEKTLKV" gene complement(3803764..3804966) /locus_tag="Dhaf_3581" /db_xref="GeneID:7260599" CDS complement(3803764..3804966) /locus_tag="Dhaf_3581" /inference="protein motif:TFAM:TIGR03402" /note="TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: chy:CHY_2199 cysteine desulfurase" /codon_start=1 /transl_table=11 /product="cysteine desulfurase NifS" /protein_id="YP_002460034.1" /db_xref="GI:219669599" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR001597" /db_xref="InterPro:IPR017772" /db_xref="GeneID:7260599" /translation="MRRVYLDHSATTPVDPEVAKLMMTYYTEKYGNPSSVHSFGRDAK AALENARESVAKLLGAQPTEITFTSGGTEADNLAIFGVTEAQSKKGKHIITSAVEHHG VLEACEFLEKNGYELTIVPVDEEGLVAVEDVAKAIRPDTILITIMHANNEVGTIQPIA EIGKLARDKGIVFHVDAVQSFGKIPIDVVAMNVDLMTVSSHKIYGPKGVGALYIRKGI RIIPRIYGGGQEKKRRSGTENTPGIIGFGKACELAAQRMEEEAVREAKLRDKLLRGIV EKIDYVKLNGPQGGEKRLPGNLNVSIQFIEGEALLLSLDMMGIAASSGSACTSGSLDP SHVLLAMGLSHEIAHGSLRFSFGAQNTEEDVDYVLEQLPKIVERLRMMSPLYDQAKHS QCSRAKAQ" gene complement(3805026..3805466) /locus_tag="Dhaf_3582" /db_xref="GeneID:7260600" CDS complement(3805026..3805466) /locus_tag="Dhaf_3582" /inference="protein motif:TFAM:TIGR00738" /note="TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 BadM/Rrf2 family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, BadM/Rrf2 family" /protein_id="YP_002460035.1" /db_xref="GI:219669600" /db_xref="InterPro:IPR000944" /db_xref="GeneID:7260600" /translation="MKLSTKGRYGLTAMVDLALNSGEGPISLKSIADRQGLSEHYLEQ LISGLRKAGLVKSIRGAQGGYVLGKKAEKIRIGDIIRVLEGPIAPVECEANGDPECCQ KSDYCVTRSIREKVRDPIEDVLDSISLADLVRDPQTMCTIADPG" gene 3805862..3807175 /locus_tag="Dhaf_3583" /db_xref="GeneID:7260601" CDS 3805862..3807175 /locus_tag="Dhaf_3583" /inference="protein motif:PFAM:PF00004" /note="PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 recombination factor protein RarA" /codon_start=1 /transl_table=11 /product="recombination factor protein RarA" /protein_id="YP_002460036.1" /db_xref="GI:219669601" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:7260601" /translation="MDLFSASFNPHQIAPLAERMRPRTLDDYIGQSEIIGKGKLLRRA IEADRVTSLILYGPPGTGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTATEQL HLYGKKTLVFCDEVHRFNKGQQDALLPAVENGTITFIGATTENPFFELNSALLSRSTL FRLQPLTAEDIRSGLAQALADKERGLGNYSVSIDPEAWEHWLNFANGDLRRALNALEL AVLTTPPEQGVRRITLSVAEESIQQRAMRFDKNGDNHYDIVSAFIKSMRGSDPDAALY WLAVLLESGEDPRFIVRRIIVHASEDVGLADPMVMLQAHAAANALEWVGLPEARIPIA QAVLAIATAPKSNSTIMAIDRATGYVRSHPTGQVPAHLRDANYPGAKKMGHGKNYLYP HDYPGHWVEQGYLPQEVQGENFFTPSGTGQDRDNRGKPQVIPPSE" gene complement(3807300..3807629) /locus_tag="Dhaf_3584" /db_xref="GeneID:7260602" CDS complement(3807300..3807629) /locus_tag="Dhaf_3584" /inference="protein motif:TFAM:TIGR01068" /note="TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: hmo:HM1_1851 thioredoxin" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_002460037.1" /db_xref="GI:219669602" /db_xref="InterPro:IPR005746" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017937" /db_xref="GeneID:7260602" /translation="MAGENVKTFTTANWNEEVLGSDKAVLVDFWAAWCGPCRMVAPII EELADEMAGRVIIGKLNVDEEPAIAGQYQVMSIPTLAVFKNGQVVDKSVGFRGKADLV KMIEKHA" gene complement(3807700..3807978) /locus_tag="Dhaf_3585" /db_xref="GeneID:7260603" CDS complement(3807700..3807978) /locus_tag="Dhaf_3585" /inference="protein motif:PFAM:PF02583" /note="PFAM: protein of unknown function DUF156; KEGG: mta:Moth_1674 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF156" /protein_id="YP_002460038.1" /db_xref="GI:219669603" /db_xref="InterPro:IPR003735" /db_xref="GeneID:7260603" /translation="MQENSDLAQKEDIIRRLKKIEGQVKGLQRMVDNEKYCVDILIQV AAVRAAINKVGVLIFENHSRECLQKAVVENHQDESIDELIAVLAKFIK" gene complement(3808107..3809885) /gene="aspS" /locus_tag="Dhaf_3586" /db_xref="GeneID:7260604" CDS complement(3808107..3809885) /gene="aspS" /locus_tag="Dhaf_3586" /inference="protein motif:TFAM:TIGR00459" /note="catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="YP_002460039.1" /db_xref="GI:219669604" /db_xref="InterPro:IPR002312" /db_xref="InterPro:IPR004115" /db_xref="InterPro:IPR004364" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004524" /db_xref="InterPro:IPR006195" /db_xref="GeneID:7260604" /translation="MTLLAERTESGSLRLSHAGAVIHLLGWVQRRRDHGGVIFVDLRD RSGFVQVVFNPDMPDFAAAERLRSEYVVAIKGKVRPRPEGATNPNLETGEIEVVAESL TILNGAKTPPFYIQDDVDVDEMVRLKYRYLDLRRPEMQQVFKIRHQVTQVMRNFFDSQ GFYEIETPMLIKSSPEGARDYLVPSRVHPGEFYALPQSPQIFKQLLMVSGMEKYFQIV RCFRDEDLRADRQPEFTQLDVEMSFAEVEDILPMMEELMARIFKETIGRDIPRPFPRM TYQEAMELYGSDKPDIRFGMEMVDVAECVKDSNFKVFTDTLAKGGRVKALCAKGCAGM PRRELDGLIQFVSIYGAKGLAYIVLAEEGIKSPIAKFFSEEQLNGLIAKLKGETGDIL FFVADKEAVVADALGHLRLELGKRLGLIPEDALNFLWVTEFPLLQWDEEDKRFVAIHH PFTSPMTEDLPLLPTEPGKVRAKAYDMVLNGTELGGGSIRIHQREVQEQMFDLLGLTP EEAKAKFGYLLDAFEYGTPPHGGIAFGLDRLIMLLTGKDNIRDVIAFPKTQSASDLMI QAPSSVDEKQLKELHIKRDILPGKTK" gene complement(3809885..3811159) /locus_tag="Dhaf_3587" /db_xref="GeneID:7260605" CDS complement(3809885..3811159) /locus_tag="Dhaf_3587" /EC_number="6.1.1.21" /inference="protein motif:TFAM:TIGR00442" /note="KEGG: drm:Dred_0756 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein" /codon_start=1 /transl_table=11 /product="histidyl-tRNA synthetase" /protein_id="YP_002460040.1" /db_xref="GI:219669605" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR004154" /db_xref="InterPro:IPR006195" /db_xref="InterPro:IPR015807" /db_xref="GeneID:7260605" /translation="MAIQRPKGTQDLLPGVVEQWQDLEEQIRKICREYGYQEIRTPIF EATELFQRGVGETTDIVNKEMYTFLDKGDRSITLRPEGTASVCRAYVENKLHGGPQPV KLYYIGPMFRYERPQSGRFRQFHQFGVEVLGVDKPMVDAEVITLVWDLYSRLGLKGLE VHVNSVGCPSCRPEHKKKLQEFLAPRQEQLCKDCQSRFEKNPLRILDCKNPTCQEITQ GAPTTLDTLCEECAEHFKELQSLLSAAEVVYKVNPRLVRGLDYYRKTAFEVLVEDIGA QSAICGGGRYDGLVQEVGGPPTPGIGFAMGMERVLAARKLAQGEQEGEGKEYLMLVAL GDQAQREGFAIVSRLRKQGMPAGIDLLGRSLKAQLKAADRVQAHYAAILGEEELHKGI IILRDLRLGEQVELPLQDFEEVVWKRYKEDGN" gene 3811803..3811916 /locus_tag="Dhaf_3588" /db_xref="GeneID:7260606" CDS 3811803..3811916 /locus_tag="Dhaf_3588" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460041.1" /db_xref="GI:219669606" /db_xref="GeneID:7260606" /translation="MSDKQTDKTRTHAPNADDNTQSPNKSDRYIDKATKQK" gene complement(3811964..3812413) /locus_tag="Dhaf_3589" /db_xref="GeneID:7260607" CDS complement(3811964..3812413) /locus_tag="Dhaf_3589" /inference="protein motif:PFAM:PF01850" /note="PFAM: PilT protein domain protein; KEGG: mta:Moth_0685 PilT protein-like" /codon_start=1 /transl_table=11 /product="PilT protein domain protein" /protein_id="YP_002460042.1" /db_xref="GI:219669607" /db_xref="InterPro:IPR002716" /db_xref="GeneID:7260607" /translation="MGRLEDKIKQYDCIAIDTNSFIYLMERNPIFFNVVRELFNSIES GTVYAVSSILLMTEVLTKPLRERDKVLVNRYMAFIGTFPNLELKEVNNKIAFKAAKLR AAYGLKTPDAIFIATAIQEKAKLFVTNDVRLQKVEGVETLLLNDYLD" gene complement(3812401..3812664) /locus_tag="Dhaf_3590" /db_xref="GeneID:7260608" CDS complement(3812401..3812664) /locus_tag="Dhaf_3590" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: noc:Noc_2206 AbrB family transcriptional regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460043.1" /db_xref="GI:219669608" /db_xref="GeneID:7260608" /translation="METEKKVITNPGGEYSVVLIPNDMIESLKEKFGNDVLWIYDEES QELTLIKKPQSYTDALSGLGAEMWKQGEGGTEFIRREREQWDD" gene complement(3813069..3813527) /locus_tag="Dhaf_3591" /db_xref="GeneID:7260609" CDS complement(3813069..3813527) /locus_tag="Dhaf_3591" /inference="similar to AA sequence:KEGG:CTC01208" /note="KEGG: ctc:CTC01208 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460044.1" /db_xref="GI:219669609" /db_xref="GeneID:7260609" /translation="MKLAEALILRADYQKRIQQLRNRLEHCVKVQEGEEPAENPQVLL SEIDAIFKELTELIQRINRTNCHIRFDEKRTLADALVERDLLLNKRGILAHIAENAAI KHDRFSRSEVKFISTIDVGETQKQADQLSREFRELDTRIQGMNWTIDLME" gene complement(3813670..3815373) /locus_tag="Dhaf_3592" /db_xref="GeneID:7260610" CDS complement(3813670..3815373) /locus_tag="Dhaf_3592" /inference="protein motif:PFAM:PF00512" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_2349 predicted sensory transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002460045.1" /db_xref="GI:219669610" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260610" /translation="MKKKIYLRTFSWLMGIWLVFMSGFSVFVLSVEKNEIKREFMERA RTIGVDVERIINDCQGSEDKKVAIQKELNWKINSLTSYQGYEAAVYTEEGELISSTNE YWTCQYTSHRKGNTHYMGYAVLDPKKWFSAEEVAEMEEYLYGEHHPVKVGDLWRYSLD MEGFWLDGAEVIPDTIRVTKTVADTFNEQGEVTSGGGKRLGVPVYRSNYVDAGELPYY EHGALQGNSVFTPDGKIRLRSDERQTALREALLDKHIFEEVIEAAIANFMQAPAIEVR EGFTYRFITPYPYQSMINSQDGGSYTSEYWIVTANEFNILTGVLPILSGVWIGCFAIF AFTAGILSAQTWKTFRSREELEQQRRDMTQAIAHDLKTPLAVISGYAENLAENVHTEK REHYAAGIQENVRRCDRMVRDMLELSRMESGGVKLALEEVSLREITEEMMSRYEDVFF TKGIIWAIDGRAGIKADRELMERVLDNLVSNAAAHTAIGGTVQVKITEKRWSITNTGS PIPDEELPRIWQAYYKLDQSRTGSGSGLGLSIVRSIMELHGFQYGAENTEAGVCFWFE W" sig_peptide complement(3813670..3813762) /locus_tag="Dhaf_3592" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.955 at residue 31" gene complement(3815370..3816050) /locus_tag="Dhaf_3593" /db_xref="GeneID:7260611" CDS complement(3815370..3816050) /locus_tag="Dhaf_3593" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btl:BALH_3242 transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002460046.1" /db_xref="GI:219669611" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7260611" /translation="MIKILLVEDDLQLQEIIEDYFTAKSAGEIEMVCAANGADGLESA QEKDYDLVLLDVMLPEVDGFTICRELRRHSDVPIMFLTARQAEGDRLHGYGLGCDDYM IKPFSLAELYAKANSLVRRAKGMVRDDLMSVGGISLDPYRGTVSVDGRVVELAPKEYA LLKLLMENAGKIVTRETLLARIWGYDFSGNDRVVDNHIKKLRQTLGKGAEQIKTVVKS GYRLEERK" gene complement(3816233..3817441) /locus_tag="Dhaf_3594" /db_xref="GeneID:7260612" CDS complement(3816233..3817441) /locus_tag="Dhaf_3594" /inference="protein motif:PFAM:PF00563" /note="PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: ckl:CKL_3430 predicted signal transduction protein" /codon_start=1 /transl_table=11 /product="diguanylate phosphodiesterase" /protein_id="YP_002460047.1" /db_xref="GI:219669612" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013976" /db_xref="GeneID:7260612" /translation="MDVFVARQPILDSQGHIHAYELLFRESMDNYFKSGDGDSATSSL ISSSFFLMDFNKLTMGKPAFINFTANLLREGMATLLPKNQVVIEILEDVEPDPEVVAA CKSLKEKGYQIALDDFVFRPDYRSLIELADIIKVDFRATQSYELQALIKRLNELNIRF LAEKVETLEEYKKAKDFGYGLFQGYFFSKPNIVQGKDISSNKLNYLRLLQQVNSPDVD IDKLEKIIRADISLTYKLLKFINSSAFGLNSQISSIKQALTLLGPKEVKKWASVIVMG KITDGKPDALAIQSYVRASFAEKLSAKVGLGSMDSNAFLLGLFSLIDACLDRPLAEIL QELPIEVPVKNALLGQPNGYRYLLELIIAYEQGNWSVVNRLLNKFSIKEECVPQYYLQ ALQEAHELNQ" gene complement(3817576..3819399) /locus_tag="Dhaf_3595" /db_xref="GeneID:7260613" CDS complement(3817576..3819399) /locus_tag="Dhaf_3595" /inference="protein motif:PFAM:PF00488" /note="PFAM: DNA mismatch repair protein MutS domain protein; KEGG: amt:Amet_4672 DNA mismatch repair protein MutS domain-containing protein" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutS domain protein" /protein_id="YP_002460048.1" /db_xref="GI:219669613" /db_xref="InterPro:IPR000432" /db_xref="GeneID:7260613" /translation="MKEPQIIYEKRKQAYEDLSKKQKRTANQLSNYRLFSFLLGFSVA VLLYLKVSGVLGIVVGILTLGVFLYLASRHRSVRTQLRYAEILTGLNQKGIQRLQGEW VKFKEQGVEFIEEKHPYAIDLDLFGQASIFQWINSAQTPLGRIALSEVLKTPAKNHEE ILKRQEAIAELAQNLGWRQRFETEGIIASQQFQAVEPFIHWAKEREEAYLKPVLKLAV TVLPAITCIMGALYVFWSAVPWQVPGLLVAVQILLLQLYNKERSKVLAMVYKHEASLK TYADMLKQLEKKKFRTEELQKLQNILRDQEGRSAYKQIQKLSKIVERISNRDNAMFIF INILLLWDYHCMIALEEWKSKSGGLLRSWLEVIAKFEELSSLATIPFENPDWVVPEIV EKGNEQQRGIAARQMGHPLLTRKRVTNDFTLREPSGIALITGSNMSGKSTFLRTVGTN LLLAYTGAPVCAQKFRCSIVEIWTCMRVSDNLEQSISSFYAEILRIKQIVEAAEGNEP VFFLLDEIFKGTNSHDRHQGAIALIQQLQKKGALGLVSTHDLELGELERESKGRIKNY HFREYYQNKEIHFDYTLREGISTTRNALYLIRLAGIEIKED" gene complement(3819457..3819891) /locus_tag="Dhaf_3596" /db_xref="GeneID:7260614" CDS complement(3819457..3819891) /locus_tag="Dhaf_3596" /inference="protein motif:PFAM:PF06983" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: lsp:Bsph_4693 protein PhnB" /codon_start=1 /transl_table=11 /product="3-demethylubiquinone-9 3-methyltransferase" /protein_id="YP_002460049.1" /db_xref="GI:219669614" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR009725" /db_xref="GeneID:7260614" /translation="MSDWLIPYINFNGNCEEAVKFYQSAIGGEAQILHYKDAPANPDF PISEGSQNLVLHAELRKDGHVIRFADNFPGTPFSQGNAISFALELPTAEETRRIFTAL SQEGEVEMDLQETFFSPLYAKFTDKFGVHWQLHCKKSGPFST" gene complement(3820061..3821380) /locus_tag="Dhaf_3597" /db_xref="GeneID:7260615" CDS complement(3820061..3821380) /locus_tag="Dhaf_3597" /inference="similar to AA sequence:KEGG:Amet_4249" /note="KEGG: amt:Amet_4249 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460050.1" /db_xref="GI:219669615" /db_xref="GeneID:7260615" /translation="MKNVEELFEEGKAQMDRIQVPDELEMRLRNALEKAEPKPQPLFF YQRQARQFKIALVLVLALLIGFNYNAIASYGKQLFGYDQVMDGTLRELNELGKGQLIG KSHTFPNGVSLTVDYVMLDENQLLLFYTVKAPAGDVTNALSPFMSLQNLFGESRCISS QGRINEEESEVKYIASFEPPSSLARKLTLNFALNGQGVSTPAEITFALDRNTAMGHTI KKDLNQTIVVDQTELKFQSIVASPTQTVIKGAAQSIFGLAIDTLSGERFRPTDINLRL IANGEAIEVKGRGLSTDMKGITFHTNFDALPASLHELKLELVSFSADHDVNQQYSLNR EEKPQVLDMLGQQVEINQIETTHGETLLTLTSEESVVLTKVYLLADGQQIALEETIND DYVKSSDGTIKHQRTLRFLGTGKDLQLDVRRMTYSKNYNKVINIPLD" gene complement(3821377..3821901) /locus_tag="Dhaf_3598" /db_xref="GeneID:7260616" CDS complement(3821377..3821901) /locus_tag="Dhaf_3598" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_4250 ECF subfamily RNA polymerase sigma-24 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002460051.1" /db_xref="GI:219669616" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7260616" /translation="MEQKIMNRVKQAQNGDKEALIQLIMSQKEDYYRLAYVYMKNQED SLDALEDMILKVFENIRTLKDAEAFFNWSKTILVNCCKQNLRKKNKVILLQELPEEAY EEAYSVHEERMTFEAYLTSLNPHYQEVLRLRFLLDMDYQTIADLLKIPLGTVKSRMHT GLQKLKQRMEVEQV" gene complement(3822220..3822528) /locus_tag="Dhaf_3599" /db_xref="GeneID:7260617" CDS complement(3822220..3822528) /locus_tag="Dhaf_3599" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: ttj:TTHA0635 nucleotidyltransferase" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002460052.1" /db_xref="GI:219669617" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7260617" /translation="MAADQNTREVLTDLKKLLLPAISDRRVKVYLLGSWARGTEKKSS DIDIGIFHPASPGPEFFAQLRDLVEESTVPYRVDIIDLVHADPAFLEKVHKEGIVWSD" gene complement(3822714..3823229) /locus_tag="Dhaf_3600" /db_xref="GeneID:7260618" CDS complement(3822714..3823229) /locus_tag="Dhaf_3600" /inference="protein motif:PFAM:PF01569" /note="PFAM: phosphoesterase PA-phosphatase related; KEGG: tte:TTE2511 membrane-associated phospholipid phosphatase" /codon_start=1 /transl_table=11 /product="phosphoesterase PA-phosphatase related" /protein_id="YP_002460053.1" /db_xref="GI:219669618" /db_xref="InterPro:IPR000326" /db_xref="GeneID:7260618" /translation="MYKVTERLRGGELFTFYWINHVLRSSFGDWLMPRITHAGGVTAS VLCSLFLLLSKTPFWHQTGVHLASSLLISHLLANILKRFVRRRRPYQALEGVLTGIKP LKDASFPSGHSTAIFCMATVLALAVPSLLIFFYGFASVVAFSRVYLGMHYPSDIMIGA SLGTITALLMG" gene complement(3823540..3824121) /locus_tag="Dhaf_3601" /db_xref="GeneID:7260619" CDS complement(3823540..3824121) /locus_tag="Dhaf_3601" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_1719 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460054.1" /db_xref="GI:219669619" /db_xref="GeneID:7260619" /translation="MWIRTHYFMAKSIHSYIKEKYKVSLQLDQLQYGSIKPDLLPKYW EGSHYYESCSGTWLAEVAQLLGEQKKRSIRNFSDKLGVILHFTADFFCSAHNLPNLRE NMWEHLLYELKLDVAFRHFESFRGIQCLNYDDPYDLLTCCRQDYLSGQPSLERDIHYI YAASLSITDLLVTQALLPVAKPLMLLKDLPESS" gene complement(3824232..3825557) /locus_tag="Dhaf_3602" /db_xref="GeneID:7260620" CDS complement(3824232..3825557) /locus_tag="Dhaf_3602" /inference="protein motif:PFAM:PF02562" /note="PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: bsu:BSU14810 hypothetical protein" /codon_start=1 /transl_table=11 /product="PhoH family protein" /protein_id="YP_002460055.1" /db_xref="GI:219669620" /db_xref="InterPro:IPR003714" /db_xref="InterPro:IPR006596" /db_xref="GeneID:7260620" /translation="MKKVFVLDTSVLLHDPKAMFCFEDNEVVIPYAVLEELEHKKRLL DDVGRLARQVIRYLDQLREGGQLAQGVALPGRGKLRIELNHSSGTILPLLSDLSLPDN RILAVTLNLANEDERPVILVTKDITMRVKADALSVQTEDFYNDKMNLTPLDEEVMVIN LKDDEAAELYEKGSLPLADKKVPNSCVKGVLTDQMEIPLLVAKDGTKLVNIYKRNGSS WGIFPKNIEQIWALHMLNDPEIKLVNLMGPAGTGKTLLALASALEQTLHQELYTRILC ARPIVPLGKDIGYLPGLKEDKVRPYMQPIYDNLEFLLRPKMSRQRDKNDDFIVDSAID MLRKKDQLEIEVLTYIRGRSIANQLIIIDEAQNLNAHELKTIITRAGEGTKIVLCGDP DQIDHPYLDKESNGLAYVASRLKGQAFYGQVVLVKGERSELATRTAELL" gene complement(3825624..3826097) /locus_tag="Dhaf_3603" /db_xref="GeneID:7260621" CDS complement(3825624..3826097) /locus_tag="Dhaf_3603" /inference="protein motif:PFAM:PF04308" /note="PFAM: protein of unknown function DUF458; KEGG: cac:CAC0166 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF458" /protein_id="YP_002460056.1" /db_xref="GI:219669621" /db_xref="InterPro:IPR007405" /db_xref="GeneID:7260621" /translation="MYSITYGEVTFEEMYQLIRNYTAHGSKIQYKLAVGTDSQNFSYT KVPITIGVHKFINDVGRGGIFFSEIRKVRKITNTKQKILFETGLSLEYAQKLQERFEK DNIYCPIAVHVDVGYNGPTAQFMDEVVGWVKSCGFLCEVKPNSYMASSVANRLSK" gene 3826829..3827992 /locus_tag="Dhaf_3604" /db_xref="GeneID:7260622" CDS 3826829..3827992 /locus_tag="Dhaf_3604" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: bha:BH2688 alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_002460057.1" /db_xref="GI:219669622" /db_xref="InterPro:IPR001296" /db_xref="GeneID:7260622" /translation="MRIAYFTDTYLPQINGVTNTLGRLGDYLKNRQTEHLFFAPQYER EPSGLTCLCPSPVARFKSVTLPFYPECRLSLPNYTKLAGIADRFRPDLIHLTDPLGIG LAGLRYAKERRIPVVSSFHTNFDAYLSYYKMEYLEGMVWALFQWFHNSCAMNFCPSQT TMQVLAAKGIENLALWARGVDSVRFSPHHRREEIRRRFISRPQQLLFLYVGRLAPEKD LDILTQSIKQVNQTHQEKIRFIIAGDGPYAQDMREQSDGNVLFTGYLQGAELSSLYAS CDAFVFPSSTETFGNVVLEAMASRLPVITVRSGGVTDNVVDGQNGLLCAPRDEASLAE AMIRLADQDELREALAANALAHASSQSWNTIFDRLLRDYRFVLDKYSDTVQSA" gene complement(3828119..3829444) /locus_tag="Dhaf_3605" /db_xref="GeneID:7260623" CDS complement(3828119..3829444) /locus_tag="Dhaf_3605" /EC_number="1.1.1.22" /inference="protein motif:TFAM:TIGR03026" /note="KEGG: cth:Cthe_1352 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_002460058.1" /db_xref="GI:219669623" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR011128" /db_xref="InterPro:IPR014026" /db_xref="InterPro:IPR014027" /db_xref="InterPro:IPR017476" /db_xref="GeneID:7260623" /translation="MKICVVGAGYVGLVSAAILADWQHNVVCVDHNEQKIEDLLAGKL PIFEPGLQELVELNRRRQYLRFTAEMAEALRGCEMIIVAVGTPPAENGHPNLEDFWAV VKSFRENVGNNVIVMIKSTVPVGTGEAVSLYLNEKVSHTFSVVSAPEFLRQGTAVHDF LHPDRLVVGCMSPEIREQMKELFQPLDCPKVFTDWHSAEMIKYASNSFLALKISYINT IANLCEAVGGNIQDVAAAVGLDHRIGQAYLKPGVGFGGSCLAKDTQGLIAQGEVHGVN VWMFKDVLEVNYEQRVHIVQRLTEVLGNLKGRKIAILGLAFKANTDDLRDAPSVTIIA QIIKLGGLVKVYDPVVDSSSLPNIISVSTADNPYAACQGVDAVIVLTEWEEFLDLDLK RLQKSMNAPVFIDGRYLFERKRLLEAGFFLPERPSSSEWPVVQSMISAR" sig_peptide complement(3828119..3828181) /locus_tag="Dhaf_3605" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.862) with cleavage site probability 0.808 at residue 21" gene complement(3829559..3831115) /locus_tag="Dhaf_3606" /db_xref="GeneID:7260624" CDS complement(3829559..3831115) /locus_tag="Dhaf_3606" /EC_number="1.3.99.22" /inference="protein motif:PRIAM:1.3.99.22" /note="catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="YP_002460059.1" /db_xref="GI:219669624" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260624" /translation="MKIVLRSHTLSRSELEAGLSLSRAFFPEAQIEVEDLSGENNAAG CGVGIIHIDIHYPDTPWQIEGSFRGLSCGTKLGSGKSSVILNEEQIKFILSHPYAGKE DKRKFLLKRGLLSLLAQVTGHTPPWGILTGIRPSKILHRLKEAGYSSEERAASLGEVY AIREDKSQLLQEVVDIQQPFLEDMKSHPQDVAVYIGIPFCPTRCSYCSFPAYSLKQGR EPLEHYLQGLGEEIRTAGAWMKAGGLTADSLYLGGGTPTILTIREMEGLIALMMTHIP HREAGEFTVEAGRPDTLSEGKLLALRASGVNRLSVNPQTMHNRTLQRIGRAHTVEDII KAYELAREIPGWVINMDLIMGLPGEGAKDIQETLERIRALEPDNLTVHALAIKRGSKE HEQGSTQNLGRELEGMQEDIMAAVRSMGMEPYYLYRQKHIAGNLENIGFAKPGLACRY NIGIMEERQTVIGLGAGASSKIVDPRDFSLVSFHHPANWQVYLKRWRETQRKREEAEK SLAKHLHPLY" gene complement(3831112..3831729) /locus_tag="Dhaf_3607" /db_xref="GeneID:7260625" CDS complement(3831112..3831729) /locus_tag="Dhaf_3607" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; KEGG: drm:Dred_0735 beta-lactamase domain-containing protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002460060.1" /db_xref="GI:219669625" /db_xref="InterPro:IPR001279" /db_xref="GeneID:7260625" /translation="MIECRAVGAMGANCYLVSCPETKKAALIDPGANGPGIQEWVDER GVQVEYILLTHGHFDHIGAVDKLRELYQAKVGIHKEDAVMLTSGAHNLSRMLGRSYEF KPADFLLEDGQILQVGNLNLTVIATPGHTLGGVCFLTSEGLLSGDTLFDGSIGRTDFP GGSYDELIKSVVKKLLVLPEDTKVYPGHGPETTIGREKRENPFLQ" gene complement(3831769..3832218) /locus_tag="Dhaf_3608" /db_xref="GeneID:7260626" CDS complement(3831769..3832218) /locus_tag="Dhaf_3608" /inference="protein motif:PFAM:PF02580" /note="hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine" /codon_start=1 /transl_table=11 /product="D-tyrosyl-tRNA(Tyr) deacylase" /protein_id="YP_002460061.1" /db_xref="GI:219669626" /db_xref="InterPro:IPR003732" /db_xref="GeneID:7260626" /translation="MRSVVQRVTQASVTVEGEVVGRIGAGLLVLFGVGRGDTEADLNW MVDKIAGLRLFEDGEGKMNRSVQDVGGEILMVSQFTLYGDCRKGKRPSFATAAPPETA GELFQQAVAKMRGYGLHVETGVFQAEMQVALVNDGPVTLLIDSEKNF" gene complement(3832221..3834401) /locus_tag="Dhaf_3609" /db_xref="GeneID:7260627" CDS complement(3832221..3834401) /locus_tag="Dhaf_3609" /EC_number="2.7.6.5" /inference="protein motif:TFAM:TIGR00691" /note="KEGG: hmo:HM1_1843 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="(p)ppGpp synthetase I, SpoT/RelA" /protein_id="YP_002460062.1" /db_xref="GI:219669627" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR004095" /db_xref="InterPro:IPR004811" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR007685" /db_xref="GeneID:7260627" /translation="MTISELMEKLHKASPEGIKLVEKAYSFAEEAHRGQLRNSGEEYI QHPLEVAKILLELEMDEATIAAAFLHDVVEDTHYTNEDIEREFGSQVAILVDGVTKLG RIEYKSKEELQVENLRKMFLAMAKDIRVILIKLADRLHNMRTLKFHSEKKQKEIALET LEIFAPLANRLGIFRIKWELEDLSFRYLKPQEYYDLSEGIALKRAEREVQINEVISQL SKRLAEVGIKADISGRPKHFYSIYRKMINQHRELSEIYDLTAVRVIVDSVNDCYGALG IIHTMWKPLPGRFKDYIAMPKPNMYQSLHTTLVGAHGEPFEIQIRTWEMHRTAEYGIA AHWKYKEGAGKPVGGNFEQKLSWLRQMLEWQHDSPDAGEFMESLKIDLFADTVFVFTP KGDVVELPAGSCPVDFAYRVHTDVGHRCVGAKINSRIVPLETKLANGDIVEILTSKQS NGPSRDWLSFVKTSQAKNRIRGWFKKEKREENIVRGREGIEREVRKLGLDPAQVLKSD LLLKIGKSYNITNVEDLYAAMGDGAVTVNKVLVRLKEDLTKDERERLQLEALQQGEGK PSSGYGKASQGVRVKGVDNILVRFSRCCNPLPGDDIVGYITRGRGVSIHRRECDNVKA HSQEEQARMVEVIWDTEVESIYPVDLEIFALDRPRLVTDVMNVVMETRTNILGINARV AKDKNTHIQLSIEIRNLGHLYNVMQKIRRVKDVTSVERVHLGGR" gene complement(3834429..3834941) /locus_tag="Dhaf_3610" /db_xref="GeneID:7260628" CDS complement(3834429..3834941) /locus_tag="Dhaf_3610" /EC_number="2.4.2.7" /inference="protein motif:TFAM:TIGR01090" /note="catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="YP_002460063.1" /db_xref="GI:219669628" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005764" /db_xref="GeneID:7260628" /translation="MDFDKYIRVIDDFPKPGISFKDITTLLKDGEAYRAAVDAIVERV RESQPDLIVGPEARGFLLGAPVAYALGIGFVPVRKPGKLPGKTVSETYELEYGSDTLE VHADAIQPGQRIAIVDDLLATGGTTSATARLIEKTGAQVAGMSFLIELGFLEGRKRLE GYEVFSLIKY" gene complement(3834977..3837382) /locus_tag="Dhaf_3611" /db_xref="GeneID:7260629" CDS complement(3834977..3837382) /locus_tag="Dhaf_3611" /inference="protein motif:TFAM:TIGR00644" /note="TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cth:Cthe_1346 single-stranded-DNA-specific exonuclease RecJ" /codon_start=1 /transl_table=11 /product="single-stranded-DNA-specific exonuclease RecJ" /protein_id="YP_002460064.1" /db_xref="GI:219669629" /db_xref="InterPro:IPR001667" /db_xref="InterPro:IPR003156" /db_xref="InterPro:IPR004610" /db_xref="GeneID:7260629" /translation="MTKRIWTKPQPLPGFKDSRSPLPQRLGITPVVADILRQRGIEAE EEIMEFLRPSLLNLNSPFAFREMARAIERLELARAQEEKILIYGDYDVDGVTSTALLY KVLTDLGFKAVAYIPSRMDEGYGLHKDAITKALQANVKVMITVDCGITAVEEVEYARS QGIDIILTDHHEPPDSLPQAYAILNPKVKDSGYPFRDLAGVGVAFKLAQALLERLEEG KSGAYAVLEILDLAALGTIADLVPLTHENRIIVAYGLRQMENTIHLGLRTLLEECGLW GKPLKAGQIAFMVAPRINAAGRMDSARAGLELLLTGHEERAVELARFLSRENTLRQDT EKEIFAEAVEILEKNPMPRVIVLSGKNWHHGVIGIVASRLVERYYRPVFLIAEEEEIG KGSARGIGGYHVLDELKAQAELLEKFGGHSQAAGFSLKLETIPLLREALNQAALHLPE EMFYERIRVDQCVPLEVLDASLLHDLEHLAPFGFGNPSPVLAGRDYPLYMADTVGKDH AHLKCMFGPQGEWEGIAFRKGEELANILGSATVDVAFGLDWNTFRGAQSIQLMIKDIQ PQASWQEEHDRFLAGQEIALGQEETAASGLYPQELEIMDWRSKNREEWSKTLESRGDS VALWDFTGISPQGPDADHRAPWAVVIGVPPSWQRVADMIRQVRNSGGQGVILAESQID PLVLKERTGYLAREDLVQMYRVLYDLAIKNNPFTWVAEEIPLWQAQAGLKIFEELNLF RCLRYSSDTIHIEWIPAQKKLDLEGALRFRGAKSRWEEAMAFKEEYCTMPWPEFKKRL GRY" gene complement(3837683..3838123) /locus_tag="Dhaf_3612" /db_xref="GeneID:7260630" CDS complement(3837683..3838123) /locus_tag="Dhaf_3612" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: yen:YE3697 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460065.1" /db_xref="GI:219669630" /db_xref="GeneID:7260630" /translation="MAFVVLILLEWLLLLAAASVFIGGIRGALVAALILSGIVWYTHP DNFWSLEVPFLIGALIGIGVLWYFVKKAGQSSIVAGLAGGIASLVIFGAFFTPLLAVI VWALVVGTGLIPKIKLKEVAWGVSPMLWRALLGILCIVIGNLMI" sig_peptide complement(3837683..3837778) /locus_tag="Dhaf_3612" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.768) with cleavage site probability 0.446 at residue 32" gene complement(3838582..3838719) /locus_tag="Dhaf_3613" /db_xref="GeneID:7260631" CDS complement(3838582..3838719) /locus_tag="Dhaf_3613" /inference="similar to AA sequence:KEGG:BPUM_1353" /note="KEGG: bpu:BPUM_1353 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460066.1" /db_xref="GI:219669631" /db_xref="GeneID:7260631" /translation="MYGLGYGAGFGGGAGFCGGGGNWGVGAGIIAIAILILIALGVIF N" gene complement(3838750..3838854) /locus_tag="Dhaf_3614" /db_xref="GeneID:7260632" CDS complement(3838750..3838854) /locus_tag="Dhaf_3614" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460067.1" /db_xref="GI:219669632" /db_xref="GeneID:7260632" /translation="MAFGAGGACGPNYLQGIAVVVVIILLLIAMGIVF" gene complement(3838984..3839943) /locus_tag="Dhaf_3615" /db_xref="GeneID:7260633" CDS complement(3838984..3839943) /locus_tag="Dhaf_3615" /inference="protein motif:PFAM:PF01522" /note="PFAM: polysaccharide deacetylase; KEGG: cbh:CLC_0116 polysaccharide deacetylase family protein" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_002460068.1" /db_xref="GI:219669633" /db_xref="InterPro:IPR002509" /db_xref="GeneID:7260633" /translation="MNHVKSKYIYLFFVITVLTTLVILGCSSRPNEAPVPQKPTINEE IQNQEPREEQEPIEKESDKDVSPPEADNPLESGNDPLESLEPTQPLPPASLSPALKSP IPILYYHSIDYEEGNELRVPPEEFEAHMEHLSQNGYESVTLDDLYQYFYAGKDLPEKA FVLTFDDGYEDNYIHAFPIAEKYGYSGTVFVVTEWIGGKGYLNRQQLLEMNQAGWQIE SHTVTHPYLDSISTEQIKEELLTSKEVLEELLGKPKVAFAYPYGVYDSSIIELCRETG YKMGLTIDRGWAGPEDPFRMKRVYCYAQMGLDEFRRRVENANY" sig_peptide complement(3838984..3839082) /locus_tag="Dhaf_3615" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.653) with cleavage site probability 0.594 at residue 33" gene complement(3840098..3840592) /gene="ilvH" /locus_tag="Dhaf_3616" /db_xref="GeneID:7260634" CDS complement(3840098..3840592) /gene="ilvH" /locus_tag="Dhaf_3616" /inference="protein motif:TFAM:TIGR00119" /note="with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit" /codon_start=1 /transl_table=11 /product="acetolactate synthase 3 regulatory subunit" /protein_id="YP_002460069.1" /db_xref="GI:219669634" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004789" /db_xref="GeneID:7260634" /translation="MRHTLAVLVENRPGVLTHISGLISRRAFNIESIAAGYTEEPDTT RITVVVQADEMELEQVVNQLSKLVDVIKITNLTAADSIQRELAMIKVKASSETRSDIV DIVDIFRAKIVDVNRETMVIELTGEETKIDALCEVLKDYGIIEIVRTGKIALSRGPIP AKHG" gene complement(3840599..3842290) /locus_tag="Dhaf_3617" /db_xref="GeneID:7260635" CDS complement(3840599..3842290) /locus_tag="Dhaf_3617" /EC_number="2.2.1.6" /inference="protein motif:TFAM:TIGR00118" /note="KEGG: hmo:HM1_1979 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein" /codon_start=1 /transl_table=11 /product="acetolactate synthase, large subunit, biosynthetic type" /protein_id="YP_002460070.1" /db_xref="GI:219669635" /db_xref="InterPro:IPR000399" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="InterPro:IPR012846" /db_xref="GeneID:7260635" /translation="MRMSGAQAVIECLKQENVEIVFGYPGGAVLTLYDALYETQFPHI LTRHEQGAVHAADGYARSTGKVGVCIATSGPGATNLITGIATAYMDSIPMVAITGQVA VSLIGRDSFQEADVTGITTPITKHNYLVKDVSELPRVFKEAFHIARTGRPGPVLIDVA KDVFAKELDFHYPDNVHLRGYRPIFEGDAQIIAQVAEELSKAQRPLLFVGGGVNLADV SPALREFVEYTRIPVISSLMGLGCIPDQHPQNYGMVGMHGTYAANMATTHADLLIGLG VRFDDRVTGLVADFASKAKVIHFDIDPAEVNKNIIANIRVVGDLKWSIPALLNQVKER AAETWMGSNREWKKQLDEWREDNPLTYLPREGMIMPQHLIQRVSHFAAEDAVVVTDVG QHQMWASQFYEYKRPRTLLTSGGLGTMGYGLPAALGAQVGCPGRQIVCFSGDGGFMMN CQELSTLADLDLPVKVFILNNQVLGMVAQWQRMFYNGHYSHTTLKGRTDFVKLAEAMG VTGLRVTEPQDVDMAIQKAFAIKGPVVVEIRIPADENVLPMVPAGGRLDQMIMGG" gene complement(3842471..3844678) /locus_tag="Dhaf_3618" /db_xref="GeneID:7260636" CDS complement(3842471..3844678) /locus_tag="Dhaf_3618" /inference="protein motif:TFAM:TIGR01129" /note="TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: cbk:CLL_A1028 protein export protein SecD" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecD" /protein_id="YP_002460071.1" /db_xref="GI:219669636" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR003335" /db_xref="InterPro:IPR005665" /db_xref="InterPro:IPR005791" /db_xref="GeneID:7260636" /translation="MKRGSILKLTAALLLIVIAVVFSIQPLTDSERGISLGLDLRGGV HLVLQAEPGPDGAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQ DPDKAVEALKTTAKLTFKDPQGNVVIEGGDLKDARAGQGERSYVVHLTFSPEGAKKFA DVTSRNIGQNIGIYLDDQLLQNPQVQAAITNGQAEITGYASLEEAAQYAVLLRSGALP VSLSIEEKRTVGASLGVDSLNKSINAGIVALVFILLFMLVLYRLPGLVANISLIVFTL IVLWALKGFGAVLTLPGIAGILLSIGMAVDLNIIIYERIKEELRLGKSLRASVEAGFS RAFLTVFDSNITTLFAAATLFFLGTSSIKGFAITLGIGIFASLFTAITFTRMLLRWIV GINPRMNTAWFGVKRENDASGKKTGEATPATQAATYEDVKASMPFYFNVVKRRYIWFA LSLIMIAVSLGSLFTQKLNLGVDFTGGTMLDMKFSQQVTQEKITQAMESVGLEGPVVQ LSDNDTSALIRTSALEEDKRNELLTALQTQVGDFDKESLKEDKVGPAIGQELTENAFL SLAIAAVLMLVYIGFRFQFAYAVSGILALVHDVIITVGIFSLFQWEIDATFVAAILTI FGYSINDTVVIFDRIRENEPRLKRGDSYEDMVDKSVWQMMGRSIKTVLTVLISLLAIY ILGGESTQGFALAMLIGVIAGAYSSVFNASQILVEIKKRMKPKRGGKAARTKA" sig_peptide complement(3842471..3842542) /locus_tag="Dhaf_3618" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.617 at residue 24" gene complement(3844782..3845444) /locus_tag="Dhaf_3619" /db_xref="GeneID:7260637" CDS complement(3844782..3845444) /locus_tag="Dhaf_3619" /inference="protein motif:TFAM:TIGR00277" /note="KEGG: chy:CHY_1513 HDIG domain-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002460072.1" /db_xref="GI:219669637" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:7260637" /translation="MKSVTVADLKADPIVQGYIEVGNRNLAAIGFTEHGLRHVGLVSN IAYNILEKLGYSERECELAAVAAYLHDIGNVINRSGHAQTGALLSAHILERHAMAPEE IAIVIGAIGNHDESDGNPVSNISAALILADKSDVHRSRVRNQDPATFDIHDRVNYAVE HSFLRVYPKDRVALEITINTEICPVMDYFEIFLARMLLCRRAASFLDTVFELKINEVK LL" gene complement(3845491..3846240) /locus_tag="Dhaf_3620" /db_xref="GeneID:7260638" CDS complement(3845491..3846240) /locus_tag="Dhaf_3620" /inference="similar to AA sequence:KEGG:BH1193" /note="KEGG: bha:BH1193 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460073.1" /db_xref="GI:219669638" /db_xref="GeneID:7260638" /translation="MTYEEHIQSELLRWQKKMLRPPGLLEKGSKAIQSKVNGLYPKKF FDTLTVTIKGLVRGVLFGLEFIPKGKPIKQAALMERDQKALELLKNYKRVAAAEGAGT GAGGIILGIADFPALIAIKMKFLFELAHIYGYSTESYKERLYLLFVFQLAFSSQEKRP GVFYNLVHWEETVKEYPELKAMELFDWEQFQVEYRDAIDLRKMLQMLPGIGAVVGAVA NYGLLEDLGHVGMNCYRLRILQEKGLIQVDL" gene complement(3846383..3846739) /locus_tag="Dhaf_3621" /db_xref="GeneID:7260639" CDS complement(3846383..3846739) /locus_tag="Dhaf_3621" /inference="protein motif:TFAM:TIGR00739" /note="TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mta:Moth_1693 protein translocase subunit YajC" /codon_start=1 /transl_table=11 /product="preprotein translocase, YajC subunit" /protein_id="YP_002460074.1" /db_xref="GI:219669639" /db_xref="InterPro:IPR003849" /db_xref="GeneID:7260639" /translation="MDQGTMTLLIYVVVFGGIMYFFMIRPQQKQAKQRRAMLDSLRVN DKIITAGGIYGKIRKVKEDSVIIQIADKVEIEVTKTGVGSVENRDIVVEKEKKADKKD KAEKKEEVVEQEQTAE" gene complement(3846828..3847946) /locus_tag="Dhaf_3622" /db_xref="GeneID:7260640" CDS complement(3846828..3847946) /locus_tag="Dhaf_3622" /EC_number="2.4.2.29" /inference="protein motif:TFAM:TIGR00430" /note="KEGG: cdf:CD2802 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase" /codon_start=1 /transl_table=11 /product="queuine tRNA-ribosyltransferase" /protein_id="YP_002460075.1" /db_xref="GI:219669640" /db_xref="InterPro:IPR002616" /db_xref="InterPro:IPR004803" /db_xref="GeneID:7260640" /translation="MAVRIEVLKEDNRTRARLGKLHTPHGVIETPVFMPVGTQATVKT MTPEELKDLGAGIILSNTYHLFLRPGHELIREAGGLHAFMHWDGAILTDSGGFQVFSL GDLRKITEEGVEFRSHLDGSKKFLSPEIATQVQMALGSDIVMAFDECTPYPATRDYAK ASLERTTRWLKRCQETLTTTDRQALFGIVQGSMYEDLRKQSAAEITELDLPGYAVGGL SVGEPKELMYEVLDYTVPLLPKDKPRYLMGVGSPDALIEGVMRGIDMFDCVLPTRIAR NGTALTRYGKLVVRNAESAHDFSPIDPTCDCYTCKNYSRAYLRHLIKADEILGLRLMT IHNLRFLTNLMSEIRAAIKENRLPEYREKFFYEYGYLK" gene complement(3847964..3848989) /gene="queA" /locus_tag="Dhaf_3623" /db_xref="GeneID:7260641" CDS complement(3847964..3848989) /gene="queA" /locus_tag="Dhaf_3623" /inference="protein motif:TFAM:TIGR00113" /note="Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /protein_id="YP_002460076.1" /db_xref="GI:219669641" /db_xref="InterPro:IPR003699" /db_xref="GeneID:7260641" /translation="MKLEDFDFELPEDRIAQHPVEPRDSSRLMVMNRWTGEIEHRVFR ELPELLQAGDVLVVNNTRVIPARLIGEKEGTQAKIECLLLTRRDKDVWETLIKPGKRL KAGQTVVFGDGLLRGELLEILPDGNRLVRFNYQGIFEEVLDQLGNMPLPPYITEQLQD KERYQTIYAKESGSAAAPTAGLHFTPELLERLQDKGVEIVEILLHVGLGTFRPVKVEN VEEHTMHSEYYRVTPDAAERINRAKSQGRRVIAVGTTASRTLESVAGENGRIEGKEGW TDIYIYPGYTFKILDGLITNFHFPKSTLVMLVSALAGRDQILKAYQIAIAEGYRFYSF GDAMMIL" gene complement(3849031..3850410) /locus_tag="Dhaf_3624" /db_xref="GeneID:7260642" CDS complement(3849031..3850410) /locus_tag="Dhaf_3624" /inference="protein motif:TFAM:TIGR02669" /note="TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: mta:Moth_1696 sporulation protein and related proteins-like" /codon_start=1 /transl_table=11 /product="SpoIID/LytB domain protein" /protein_id="YP_002460077.1" /db_xref="GI:219669642" /db_xref="InterPro:IPR013486" /db_xref="InterPro:IPR013693" /db_xref="GeneID:7260642" /translation="MLPLSDRLSFSVKKVFFFLMVSLALQAAPCQAKEIDVELVWKFK DAGWIKVEVEQGNYTLKEAGKDKQTAMPFPAGSNLELTWGGWSPALKKNYDPFQSWSG KELELNRQGAYGSFLVQTPDGQKVSYRGSLKIRWENGGCKLINRVDQEEYLKGVVSIE MSNSWAGDGLEALKAQAVAARTYMVRKTRTAAQITDSPDYDQAYSGRNVEGAANQAVE ATRGEILVDSITYQPIDALYSSHNGGYTELAENVWSNPDPHFISQPDPFSQGIGGPAD RWRFIIGADILGQAFEMGPIAKIELDKLPSGRVKKVRMQDIHGKLHEVSGRAFVQKFY PYGRPITVQAFLGNLFTVRQIPGDEPLFSFDLGELGVPSRLSELIERQKAMEAGSGPR LSRILSTNQGIRDIPAAHDVFVFNGRGWGHGVGMSQWGAYHMAQRGYTYGEILAFYYQ QTDLIKHYL" sig_peptide complement(3849031..3849129) /locus_tag="Dhaf_3624" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.994 at residue 33" gene complement(3850504..3851550) /gene="ruvB" /locus_tag="Dhaf_3625" /db_xref="GeneID:7260643" CDS complement(3850504..3851550) /gene="ruvB" /locus_tag="Dhaf_3625" /inference="protein motif:TFAM:TIGR00635" /note="promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvB" /protein_id="YP_002460078.1" /db_xref="GI:219669643" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004605" /db_xref="InterPro:IPR008823" /db_xref="InterPro:IPR008824" /db_xref="InterPro:IPR011704" /db_xref="InterPro:IPR013317" /db_xref="GeneID:7260643" /translation="MEERMITPQQLPGDQEGEVLRPHRLADYIGQTKVKDNLQIFIQA ALARGEALDHVLLYGPPGLGKTTLANIIATEMEVNIRTTSGPAIERPGDLAAILTSLE PRDVLFIDEIHRLSRTTEEILYSAMEDGCLDIVIGKGPSARSIRLTLPPFTLVGATTR AGQLASPLRDRFGVISRLEFYEVEDLIRIITRAAGILNLQITLEGASEIARRSRGTPR VANRLLKRVRDYAQVWEDGRVTQELAGKSLDRLEVDPAGLDRIDQKCLLTIIQMFAGG PVGLETLSATIGEEAETIEDVVEPYLLQQGFIQRTPRGRVATVRAYQHLNIPVNSSHQ EGGQGDSLFDAAED" gene complement(3851617..3852213) /locus_tag="Dhaf_3626" /db_xref="GeneID:7260644" CDS complement(3851617..3852213) /locus_tag="Dhaf_3626" /inference="protein motif:TFAM:TIGR00084" /note="KEGG: hau:Haur_2516 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: helix-hairpin-helix motif; RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvA" /protein_id="YP_002460079.1" /db_xref="GI:219669644" /db_xref="InterPro:IPR000085" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR011114" /db_xref="InterPro:IPR013849" /db_xref="GeneID:7260644" /translation="MLRGKVWEIQADKLILDVQGVGYQLSIPYGLLGKAHPGHELILY THVILREDELALYGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASEN ITLLTKVPGIGKKTAQRLILELKEKFKGRAIALEGIEGAGSLPQAAFHSEAMETLLAL GFSQEEAKKALQALPDSAQALSTEEQVRLALRSLAATK" gene complement(3852219..3852716) /gene="ruvC" /locus_tag="Dhaf_3627" /db_xref="GeneID:7260645" CDS complement(3852219..3852716) /gene="ruvC" /locus_tag="Dhaf_3627" /EC_number="3.1.22.4" /inference="protein motif:TFAM:TIGR00228" /note="endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase" /protein_id="YP_002460080.1" /db_xref="GI:219669645" /db_xref="InterPro:IPR002176" /db_xref="GeneID:7260645" /translation="MLILGIDPGTAIMGYGLIEKKGNRLFPVDYACWRTPAHTPMPER LLMLYHEIEAYIKEKQPHHVAVEELFFNRNTTTAISVGQARGVVLLAAAQCGLPVYEY TPLQVKQAVAGYGRADKQQIQQMVRALLGLQEIPKPDDTADALAIAICHAHSVNLLNR MGGAL" gene complement(3852821..3853825) /locus_tag="Dhaf_3628" /db_xref="GeneID:7260646" CDS complement(3852821..3853825) /locus_tag="Dhaf_3628" /inference="similar to AA sequence:KEGG:Swol_1838" /note="KEGG: swo:Swol_1838 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460081.1" /db_xref="GI:219669646" /db_xref="GeneID:7260646" /translation="MSFMHPERIYFEPAVLNYELGRQLQAKYATVPWEPIESHNNIEK LRKNPNQEFPRMKRLLILGVRKSLKYTPNQKVSDFLVPYTSSGCSAMCLYCYLVCNYN KCSYLRLFVNREQMMDKLIKTADQGEGELVFEIGSNSDLVLENTITGNLEWTIEEFAK KERGYLTFPTKFDRVEPLLALNHRERIIFRMSVNPEEIIQKVELGTSPLKARVQALNQ MAEAGYKVGILIAPVVLVEHWQELYAQLIEQLAELITPQAKKKLFIEIIFMTYSFIHR AINQEAFPKAVELYDQSRMTGRGRGKYWYKETVRVSGEEFLRKELAEKLKGIPILYVV" gene complement(3854032..3854790) /locus_tag="Dhaf_3629" /db_xref="GeneID:7260647" CDS complement(3854032..3854790) /locus_tag="Dhaf_3629" /inference="protein motif:PFAM:PF01709" /note="PFAM: protein of unknown function DUF28; KEGG: hmo:HM1_1824 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460082.1" /db_xref="GI:219669647" /db_xref="InterPro:IPR002876" /db_xref="GeneID:7260647" /translation="MSGHSKWANIKHKKAKADAQKGKIFTKLGRELIVAARAGGGDPN NNFRLKIAIDNAKSANMPNDNIQRAIQKGVGGGEGESYEELRYEGYGPGGVAIMVDIM TDNRNRTAGEVRHIFSKHGGNLGETGCVNWMFTEKGQLMILKEDLKCDEDELMLLVLE AGAEDLQQDEESFVVYTAPGDMEAVRQALLDQGIAIEEAKINQVPQNTIEIADLEQAK KLVRMMELLEDHDDSQGVYANFEFADSIDEEELD" gene 3854922..3855422 /locus_tag="Dhaf_3630" /db_xref="GeneID:7260648" CDS 3854922..3855422 /locus_tag="Dhaf_3630" /inference="similar to AA sequence:KEGG:HM1_0426" /note="KEGG: hmo:HM1_0426 cytochrome c nitrite reductase, small subunit NrfH" /codon_start=1 /transl_table=11 /product="cytochrome c nitrite reductase, small subunit NrfH" /protein_id="YP_002460083.1" /db_xref="GI:219669648" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7260648" /translation="MSPIPRKYKKLLVISIPVLAVFVGFIAYIYEYTSTTHYCGTTCH IMEEAYETQLHSVHREELVGCGDCHLYHGPNIAYSLIYKGYSGMKDVYKNAFAQPVVL HTSEWSQDVIQKNCLRCHQDVVANIRISDGPQCFDCHRNTPHGQGTQSFGIQTISTPL HSIGGS" gene 3855423..3856865 /locus_tag="Dhaf_3631" /db_xref="GeneID:7260649" CDS 3855423..3856865 /locus_tag="Dhaf_3631" /EC_number="1.7.2.2" /inference="protein motif:PRIAM:1.7.2.2" /note="PFAM: cytochrome c552; KEGG: chy:CHY_0243 cytochrome c552" /codon_start=1 /transl_table=11 /product="Nitrite reductase (cytochrome; ammonia-forming)" /protein_id="YP_002460084.1" /db_xref="GI:219669649" /db_xref="InterPro:IPR003321" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7260649" /translation="MRKSWKSFLLISLFLAVSSVLAFGCASQITPSPRTAATIPEGAL DSETWGKVYPDQYASQNKQKEMTKGNSKYGGSLPESHLEKYPIEKRLFAGYGFSEDYN DERGHVYALEDVTTTLRVNEKTISSCWNCKSPQVPGLIEQMGDDFWSTPFLQLKDQIT MPIACADCHDPETMNLRITRVTLLNALKERGIDPNQLSRQEMRTMVCAQCHVEYYFEP ETKRVTYPWKYGLTANDAEKYYEEINFKDWNHAETGAPMLKAQHPDYELFSTGVHAAN GVACADCHMPYVKEGTSKISSHHLQSPLNSISESCQTCHRQSEEYLKNQVIATQDKVF ATRTVLENALADAMDAIKTADKNANAKADAMSKARDLHRKAQWRWDYIAAENSMGFHS PNEALRVLGEGIDFARQAQLQANLAVGTAAGGAANPDAGQTPGAGTANEAAGGATPLP DNKNNDKKPTDGDGSAPNDETKQTEEKKQS" sig_peptide 3855423..3855497 /locus_tag="Dhaf_3631" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.456 at residue 25" gene complement(3856937..3857347) /locus_tag="Dhaf_3632" /db_xref="GeneID:7260650" CDS complement(3856937..3857347) /locus_tag="Dhaf_3632" /inference="similar to AA sequence:KEGG:Moth_1707" /note="KEGG: mta:Moth_1707 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460085.1" /db_xref="GI:219669650" /db_xref="GeneID:7260650" /translation="MRVAVIDGQGGGMGKHIVEQLRKRMPDLEILALGTNALATGAML KAGATEGASGEAAICYNAHRVDIIAGSLAIATVHGLLGEITPGIAGAISSSPALKLLI PIQRSNTVITGITRMPLPHHVEQLVDEVAARAKE" gene complement(3857435..3858427) /locus_tag="Dhaf_3633" /db_xref="GeneID:7260651" CDS complement(3857435..3858427) /locus_tag="Dhaf_3633" /inference="protein motif:TFAM:TIGR02124" /note="TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: hmo:HM1_1487 hydrogenase expression/formation protein HypE" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein HypE" /protein_id="YP_002460086.1" /db_xref="GI:219669651" /db_xref="InterPro:IPR000728" /db_xref="InterPro:IPR010918" /db_xref="InterPro:IPR011854" /db_xref="GeneID:7260651" /translation="MERIIMAHGSGGRLSHQLVQEIFQKHLSNDFLNQMNDATCLPGS EKLAVTTDSFVVSPIFFRGGDIGKLAVCGTINDLAVAGAQPRYLSLAVILEEGFPIGD LERIVMSIAETSRQAGAAIVCGDTKVVERGSADKIFINTTGIGMIQERLVGPHCIKPG DYVLISGTLGDHGISILADREGLEFETPVISDCAPLNHLIDSFYMPGVHCMRDPTRGG VGTTLNELARQAQVSILLEEEKLPLNPGVAGACGMLGLDPLYLANEGKVLVIVSPEAV ERVLIQMRAHPLGKEAAVIGRVEEADPGLVLLETPLGGKRIVGMLEGEHLPRIC" gene complement(3858428..3859531) /locus_tag="Dhaf_3634" /db_xref="GeneID:7260652" CDS complement(3858428..3859531) /locus_tag="Dhaf_3634" /inference="protein motif:TFAM:TIGR00075" /note="TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: sfu:Sfum_4014 hydrogenase expression/formation protein HypD" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein HypD" /protein_id="YP_002460087.1" /db_xref="GI:219669652" /db_xref="InterPro:IPR002780" /db_xref="GeneID:7260652" /translation="MHVNNYNSKQSVKEVAAGYLKEIRELAAAPYTVMEVCGTHTVAI AKNALRDLLPAQIRLVSGPGCPVCVTDSSDIDQFLYLAAQPHVITATFGDMIRVPGSQ KSLQMLRGEGADIRIVYSTLDALDLARKNPDKEVVFLGVGFETTVPTVCVSIEQAQKE DIRNYSILSMHKLVPPVLRALAEDPETEVDGFLDPGHACAIIGSEALAFMAEDYAMPG VVTGFEALDILEGLVMLLRQRDQGRAEIEIQYDKIVKPEGNRVAQALIHKIFEPVDAA FRGLGIIPLGGLGVRKEYEDWDAAKKFALPEFETVEIPGCRCGNVLKGQITPPECPLF ARKCTPLSPVGPCMVSSEGSCAAYYRYAQRSGI" gene complement(3859518..3859739) /locus_tag="Dhaf_3635" /db_xref="GeneID:7260653" CDS complement(3859518..3859739) /locus_tag="Dhaf_3635" /inference="protein motif:TFAM:TIGR00074" /note="TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: hmo:HM1_1485 hydrogenase assembly chaperone hypc/hupf" /codon_start=1 /transl_table=11 /product="hydrogenase assembly chaperone hypC/hupF" /protein_id="YP_002460088.1" /db_xref="GI:219669653" /db_xref="InterPro:IPR001109" /db_xref="GeneID:7260653" /translation="MCIAIPALVVSIDEMMAKVDMMGNERIVGTHLVPDVQVGDYVLV HAGFAIEIVDPQYAKETEELLIEEANARE" gene complement(3859739..3862015) /locus_tag="Dhaf_3636" /db_xref="GeneID:7260654" CDS complement(3859739..3862015) /locus_tag="Dhaf_3636" /inference="protein motif:TFAM:TIGR00143" /note="TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: pth:PTH_1696 hydrogenase maturation factor" /codon_start=1 /transl_table=11 /product="(NiFe) hydrogenase maturation protein HypF" /protein_id="YP_002460089.1" /db_xref="GI:219669654" /db_xref="InterPro:IPR001792" /db_xref="InterPro:IPR004421" /db_xref="InterPro:IPR006070" /db_xref="InterPro:IPR011125" /db_xref="GeneID:7260654" /translation="MTTAYFIHLNGIVQGVGFRPYVYRLAHEMGIKGWVNNSSHGVYI HAEGLQVPVFYRRLLQEVPPLAKITHEEYREVAFGNYADFAILQSREEGQADVLISPD IATCGDCLAELRDVQDLRYRYPFINCTNCGPRYTIIQDVPYDRAQTTMQSFPMCPVCA QEYADPLNRRFHAQPVACSQCGPAVQLLNAQGDFCAGLGIEQIARGEIIAIKGLGGFH LVCDGGNPTAVQRLRQRKERGAKPFALMARNLEVIRRYLKVSLKEEELLKSSAAPIVI LERKKESGNVLPDELAPGLHTLGVMLPYTPLHALLFDGAFDFLVMTSGNLSGRPLIYT NEEAVRELKGIADYFLLHNRDIFHPCDDSVVQVIGDEAVLHRRARGYVPLPQKCPQDL KASILGVGGELKNAFCLGAKDRAFTSQYIGDMEGYENFQRFRQELASFQKVVQIVPEV VAYDAHPDFQTTQFALAGPWPQKIKVQHHHAHLVSVLGEHGITAPALGVVCDGTGWGE DRRIWGFEFLKGNAEGYRRLAHLEYLPLPGGDAGAKHPLRIAYAYGKSLLSEREWLMT ERLWERLAGAEQKILDQQLEKRLQIFETSSGGRLFDAVSALLGICTSVTYEGQAAIEL ESKAALWSGKNSEDALEPRYLIEWAENGECLILKVKELYWGIIQDVLDGKEPAFIAYH FHDSLAHGIVRTVLELQVGEGPLVLTGGVFQNKLLTEKVLVLCKAFGIQVIRAKELPP GDGGLALGQILIGNERCS" gene 3862352..3862570 /locus_tag="Dhaf_3637" /db_xref="GeneID:7260655" CDS 3862352..3862570 /locus_tag="Dhaf_3637" /inference="protein motif:PFAM:PF00269" /note="PFAM: small acid-soluble spore protein alpha/beta type; KEGG: tte:TTE1773 small, acid-soluble spore proteins, alpha/be" /codon_start=1 /transl_table=11 /product="small acid-soluble spore protein alpha/beta type" /protein_id="YP_002460090.1" /db_xref="GI:219669655" /db_xref="InterPro:IPR001448" /db_xref="GeneID:7260655" /translation="MSNKTPMVPESENKLDQLKWEVAEELHLDDDIQERGFENMTTRE VGQIGGNMVKKMVAFAEEQMGKGADIKD" gene complement(3862718..3864349) /locus_tag="Dhaf_3638" /db_xref="GeneID:7260656" CDS complement(3862718..3864349) /locus_tag="Dhaf_3638" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_1731 long-chain-fatty-acid--CoA ligase" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_002460091.1" /db_xref="GI:219669656" /db_xref="InterPro:IPR000873" /db_xref="GeneID:7260656" /translation="MNDPVWYNCYEEGVPKRIEIENISLYEMFERSAKNFGQRPAIVF GGKTWTYTDMERDVDRLAKALSRLGVKPKDRISINMPNSATWMISFFAIMKVGAIVVQ TNPLYVEGELKALMNDSGAIGMITVAPLYPRVQGIRQETSLKWVLVEGLKAMGLDEGE GTCDFHGCLNDDSEVEWSKPVIDPQTDIAVLQYTGGTTGTSKGAMLSHGNLYANAYQI WEWIKGSPGQEKSLCVIPLFHIYALSVCMNTSILGGSAVIPVPKFDADLILKLINDEK PTLYPGTPTMYVALINHPKLKEHDVSSIRACVSGSAPLPVEVALRFGELTGGKLVEGY GLSEASPVTHINPFPSARVGSIGTPVSNTQAKIVDIELGDKELPVGEVGELAVKGPQV MLGYWQRENETRAVLRDGWLYTGDLARMDEDGYFYVVDRKKDMIITGGYNVYPREIEE ALYAHPAVREAICAGVPDSYWGEKVKAYVVLREEQQVTEEELLSFLKKELASYKVPKQ IEIRDNLPKTAVGKVLRRFLVEEEKQKLEEHAQEA" gene complement(3864588..3865649) /locus_tag="Dhaf_3639" /db_xref="GeneID:7260657" CDS complement(3864588..3865649) /locus_tag="Dhaf_3639" /inference="protein motif:TFAM:TIGR01905" /note="TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sus:Acid_1946 tetratricopeptide TPR_4" /codon_start=1 /transl_table=11 /product="cytochrome C family protein" /protein_id="YP_002460092.1" /db_xref="GI:219669657" /db_xref="InterPro:IPR010177" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7260657" /translation="MKSRKKILLGLLVLALAVTVLIGCNNQKPGPGTAVTPPPTDQQP VAQYVGSDSCKTCHAEYHTNFEKSHHALAFKPLSDYPLTQPAGEIKLFDAKATDKTGN LDLANKDQVYGVMMDHYVVAKAPEGFTDKVYRVAALEKSGDKYVVKPAKEADIDKDGK PDYTAESYTCGSCHSPGIEHNSKDYGVSCESCHGPGGNHVTAANKAGTMDPKTAVNAC NSCHESNPSKNDKGVWTANTHYGTRNYFASKHGQSASMNCLTCHDSHKPNASGLLLKA DKAQDICAKCHEGKSFDLEKMMWKNPTDARGHFTKDHSFGALPYDKLGDDKKTPEIEI TNQEAIDLITKLLPEAAKK" sig_peptide complement(3864588..3864659) /locus_tag="Dhaf_3639" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.711 at residue 24" gene complement(3865906..3866091) /locus_tag="Dhaf_3640" /db_xref="GeneID:7260658" CDS complement(3865906..3866091) /locus_tag="Dhaf_3640" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460093.1" /db_xref="GI:219669658" /db_xref="GeneID:7260658" /translation="MKVYVVKCMDTNFVSSIDKIFLNKQEAERYAALQTKKYDFVTFM VTEYQVFSDGSQCSLAV" gene complement(3866234..3867235) /locus_tag="Dhaf_3641" /db_xref="GeneID:7260659" CDS complement(3866234..3867235) /locus_tag="Dhaf_3641" /inference="protein motif:TFAM:TIGR01728" /note="KEGG: cdf:CD1484 putative aliphatic sulfonates ABC transporter,substrate-binding lipoprotein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein" /protein_id="YP_002460094.1" /db_xref="GI:219669659" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR007210" /db_xref="InterPro:IPR010067" /db_xref="GeneID:7260659" /translation="MLKRKTPFIYLLCLFLLLLGTQGCSTVKQGQPEEKKPQALTQLN ASYSTRPINVPAIVALDQHNFEKDFQGEGIDFKWTEIAAGPAQLEALASKSIDISTSM NYVSALLAKANGNDIKVVAGYSQFPKGIAIVAQTELNVKTLADLKGKKIALQKGTMLH EFLIKALKKENLSPGDVEMVAMESVDAAPALMGGQIDAAILPDPLLTKVVSSGKGTLV LNAEGLITGQTFIVARADFALEHPEAVKRFIQLHEESIHWAEQNKEQFYSVAGEQLKL EPKAVAALYPKFMFSTEINSEMIHELKLSAQFLQENGFIKSTINTDQLVDDLVGTSH" sig_peptide complement(3866234..3866314) /locus_tag="Dhaf_3641" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.239 at residue 27" gene complement(3867263..3867982) /locus_tag="Dhaf_3642" /db_xref="GeneID:7260660" CDS complement(3867263..3867982) /locus_tag="Dhaf_3642" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hwa:HQ2632A ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; sulfonate ABC transporter ATP binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460095.1" /db_xref="GI:219669660" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260660" /translation="MRPLLEIDGVRKEFITPRTNTTALAKVYMTVAGGEFICLVGPSG CGKTTLLRLIAGLELPTAGTVSILGKKVLGPSRQCGMVFQEPRLFPWLTVADNIGVGV KGRLSVSDLQQAVDYQLELIGLTDFAQVYPHELSGGMAQRVAIARALAIDPELLLLDE PFSALDALTRRRMQDEILQLWRATGKTMIMVTHDIDEAINLGQRVLVFSPSPGRITHV FDVEKEKRVEIKREIMSCLTL" gene complement(3867996..3868754) /locus_tag="Dhaf_3643" /db_xref="GeneID:7260661" CDS complement(3867996..3868754) /locus_tag="Dhaf_3643" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bay:RBAM_009130 SsuC" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002460096.1" /db_xref="GI:219669661" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7260661" /translation="MNERIIRKIHGLVFPALLIILWQGVSYFGWVNPYLLPSPGDIIG AFTELLFTGEIFTHIKSSLFRLGVGMAITIGLAVPLGLFIGLFSRAQKFITPTLAFLQ QIPTIAWIPVFILWLGIGEAMKIALMVYAAFFPVFINTLFGIQSVDQKLKEVAQAFSL GYQARITHVYLPSAAPHFFVGIRLGFSNCWRALVAAEIIASSKGLGYLLMEGRNLAQA ELIFVSIFIIGSLGALIDYGIKYLEQRALPWHKA" gene complement(3868798..3869832) /locus_tag="Dhaf_3644" /db_xref="GeneID:7260662" CDS complement(3868798..3869832) /locus_tag="Dhaf_3644" /inference="protein motif:PFAM:PF01757" /note="PFAM: acyltransferase 3; KEGG: npu:Npun_R6560 acyltransferase 3" /codon_start=1 /transl_table=11 /product="acyltransferase 3" /protein_id="YP_002460097.1" /db_xref="GI:219669662" /db_xref="InterPro:IPR002656" /db_xref="GeneID:7260662" /translation="MTAGAGSNSLVKRVLWIDILKGLGIIAVVLGHSGYQNGYFMFFF HMPLFVFASGYLYKKNSNMSWWEASKRKFKHLMVPYIAYMLLITLIMCSYNLVAGAPL LKALSLDWKSLILGGSLLNGAYGVFWFVTFLFTVQILYDFLQRKVKSSWFLGLIIIAF YGIAHWESTNYQHIFVPGNVDVALFGIIFYALGHLFHEKDWLNKEGVGRLLLLGAIAY LAVFFYLYAEGMIRFGLDLKHRQYYFLGTVILTPLTCTIIVAFLSKLLSRIKVIRTML EFLGKATMEIMYLHIMTGIIISKFIPLPWYLFLLAGLIFPSVWYYSLLKLKELKNIRS HTRYLAKEKI" gene complement(3870015..3870130) /locus_tag="Dhaf_R0078" /db_xref="GeneID:7260663" rRNA complement(3870015..3870130) /locus_tag="Dhaf_R0078" /product="5S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7260663" gene complement(3870272..3873184) /locus_tag="Dhaf_R0079" /db_xref="GeneID:7260664" rRNA complement(3870272..3873184) /locus_tag="Dhaf_R0079" /product="23S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7260664" gene complement(3873538..3875208) /locus_tag="Dhaf_R0080" /db_xref="GeneID:7260665" rRNA complement(3873538..3875208) /locus_tag="Dhaf_R0080" /product="16S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. Apr2 2, 2007" /db_xref="GeneID:7260665" gene complement(3875738..3876931) /locus_tag="Dhaf_3645" /db_xref="GeneID:7260666" CDS complement(3875738..3876931) /locus_tag="Dhaf_3645" /inference="protein motif:PFAM:PF00108" /note="PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: gbm:Gbem_1415 thiolase" /codon_start=1 /transl_table=11 /product="Thiolase" /protein_id="YP_002460098.1" /db_xref="GI:219669663" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR013747" /db_xref="GeneID:7260666" /translation="MYSKAFIPYGGYYSTPFARWQGVLQNEHSVELAAATAKRWFASK GIDPKIFKYLVLGKTIGQLHTFYAAPWAAALMGAPDIPGLHITQACSTSTTCLSQAAS SIETGLYDTSFCLLTDRASNGPFTLWPNPMGPGGELIKESWMMDNFAADPWAGSAMIQ TAENVVAKAGGITKEDVDRVTARRYEQYNDALANDRAFQKRYMFPVEYKISKKKTGIL EEDDGVTSSTYETLAPLKAVIPGGVHSFGAQTHPADGNCGLIVTTQDRAQELSTDKNI RIQILSYGYARAEKAHMAAAVVPASKMALDKAGIGTQDLKAIKSHNPFTGNDLFMANE MGLDVMNMNNYGCSLVYGHPQGPTAGRTIIEMIEELVMLGGGYGLFTGCAAGDTGASL VIKVS" gene complement(3877040..3879124) /locus_tag="Dhaf_3646" /db_xref="GeneID:7260667" CDS complement(3877040..3879124) /locus_tag="Dhaf_3646" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: chy:CHY_1598 putative iron-sulfur-binding reductase" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF224 cysteine-rich region domain protein" /protein_id="YP_002460099.1" /db_xref="GI:219669664" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260667" /translation="MLYWNIDGHWLIYPLAVITFIIFFYGYYRRYRLWKMGQPEKRWP GLWQGIKDVLIYGFGHKRILKEGYPGLMHAMIFWGFALLFFATLIVAIQADFGLQIFR GPLYLFIKVTANLFGLLALLGILMALWRRYVIRPQRLDNTKDDAIILALILLILITGF IVQGLRMAIEPDPWATYAFMGYIMAPWLASLFSEATLLSLHKIIWWIHPILAFTLIAY FPYSKLSHILLAPANQALRHHGPPGVPEPIDFEDESIETYGKSKLREFSWKTLFNTDA CVKCGRCQDHCPAYLSGKHLNPKQVIQDLRVHMEEVGKAYENYRKKHPTTAVGGGAGL QETVAAAQGSTGQENLPGEEELGLPELIGQVISENDIWDCTTCRSCEEQCPIFVEHVD KTVAMRRNLVLMESCFPPEAQLAFRNMENNGNPWGIGWSTRADYLQSLDVPTLAENPE AEILYYPGCSGAFDGRNQKVSAAIVKLLREAQVNFAILGNEEKCCGDSARRLGNEYLF HSLATENIKVLNGYGVKKILTQCPHCFNCLKHEYPQFGGDFEVLHHTEYLNDLLSSGR LQLNHGIGGADGRRITYHDSCYLGRYNTIYQAPRQLLQEVGLNLLEMAHTKEKSFCCG AGGGRMWLEEHQGERINVMRADEAIAPGVDRVGTACPFCLTMISDGVAAREAGEQVKV LDIAEILAEKIS" gene complement(3879170..3880159) /locus_tag="Dhaf_3647" /db_xref="GeneID:7260668" CDS complement(3879170..3880159) /locus_tag="Dhaf_3647" /inference="protein motif:PFAM:PF01012" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pth:PTH_1553 electron transfer flavoprotein, alpha subunit" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_002460100.1" /db_xref="GI:219669665" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:7260668" /translation="MPKGIWIFVEQAAGKIRKISLELLSQGRKIADQTGEPLVAVIAG EGIAPLAQEAAAYGVDQVYLLDSPQLAQYTTGVYTSALTKLIREKEPQAFLLGYTAVG KDLAPRLAQRLGVGLASDVIDIEVDSEKFLICKRPVYTGSAYSFVEIVTRPVLATVRA KSFPVAESTPSRQAEVIERTVTVDPEDLKVLVKDVALLVTSRPALTEADFVVSGGRGM KAQENFAILEGLADVMGGAVGASRAAVDSGWIDNQFQVGQTGSIVAPTLYVACGISGA IQHLAGMGASKFIVAINKDPEAPIFSVADYGIVGDLFEVVPLLTEEFKKLVSA" gene complement(3880194..3880967) /locus_tag="Dhaf_3648" /db_xref="GeneID:7260669" CDS complement(3880194..3880967) /locus_tag="Dhaf_3648" /inference="protein motif:PFAM:PF01012" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pth:PTH_1552 electron transfer flavoprotein, beta subunit" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_002460101.1" /db_xref="GI:219669666" /db_xref="InterPro:IPR014730" /db_xref="GeneID:7260669" /translation="MNIVVCVKQTIDTEAKIVLNSDGKVDVNGVTLVINPLDEYAIEE ALRMKEKFGGEVTVVTLGGEEATAAIRGALAMGADQAIHIKDPALGEVDEGIVAAILA KAVEPLPYDIILAGVMDTDIGSAQVAVRMAEKLGLPSISSVTKLDINGSQATALRVID GGLATLEVTLPAVITVVQGINEVRYPSVAGIMKAKKKPLTTVKLSDLGLNASDFALQA KVIHYTLPTPRKGGRILPGEAAESTRELARLLREEAKVL" gene complement(3880988..3881770) /locus_tag="Dhaf_3649" /db_xref="GeneID:7260670" CDS complement(3880988..3881770) /locus_tag="Dhaf_3649" /inference="protein motif:PFAM:PF00378" /note="Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_002460102.1" /db_xref="GI:219669667" /db_xref="InterPro:IPR001753" /db_xref="GeneID:7260670" /translation="MPENRVVELTVCNGVGVITINKPPVNALTLEVRGQLKETLNEVE KNTGIRVLVITGAGPKCFVAGADIKDFPNQFKEGPRENATIYKEMFSYLENTPRPVIC ALNGLALGGGLELALACDIRIADEKAKLGLTEVLLGLLPGLGGTQRLARLVGPAKAKE LLFSGKIVKADEALRIGLVNEVVPAGESLNEALKLAEKLAKGAGIAMGYDKLLINKGL ELSLADALEMEMHYVEKVFETEDLREGLDAFINKREAVFKNR" gene complement(3881796..3882056) /locus_tag="Dhaf_3650" /db_xref="GeneID:7260671" CDS complement(3881796..3882056) /locus_tag="Dhaf_3650" /inference="similar to AA sequence:KEGG:Igni_0624" /note="KEGG: iho:Igni_0624 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460103.1" /db_xref="GI:219669668" /db_xref="GeneID:7260671" /translation="MKVEMKVKSIKGHCAAGYQVGERVIYSEPNITSCEGSPLCLYAL SSFIPYLTALGRETEGKDWINQLRALQCPDPANTVVFSLQRN" gene complement(3882184..3883041) /locus_tag="Dhaf_3651" /db_xref="GeneID:7260672" CDS complement(3882184..3883041) /locus_tag="Dhaf_3651" /EC_number="1.1.1.157" /inference="protein motif:PRIAM:1.1.1.157" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bha:BH1995 3-hydroxybutyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxybutyryl-CoA dehydrogenase" /protein_id="YP_002460104.1" /db_xref="GI:219669669" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:7260672" /translation="MTMTKIGVLGAGSMGGGIAHLAAVKGLDVILCDVEQRFVDGAVQ RIAGFLDKNVAKQKMTVEEKDAALQRITTTTNMEDLASVPLVIEAIFEDMDIKKTAFQ KLDQICGPETIIASNTSSMSITTLAAATSRPDRVVGMHFFNPPLVMRLVEVIRGYYTS DETVAKVSDVSRAMGKTPVEVKKDTPGFIVNRIMMPQFLEAVRIAEEGIASIEDIDTA VKLGLNYPMGPFELMDFTGVEISVHVSDYFVEEYKDMKWNAPQLLKNIVRAGRLGKKT GAGWYDYDK" sig_peptide complement(3882184..3882249) /locus_tag="Dhaf_3651" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.940) with cleavage site probability 0.657 at residue 22" gene complement(3883123..3884877) /locus_tag="Dhaf_3652" /db_xref="GeneID:7260673" CDS complement(3883123..3884877) /locus_tag="Dhaf_3652" /inference="protein motif:PFAM:PF00441" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: chy:CHY_1607 acyl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_002460105.1" /db_xref="GI:219669670" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:7260673" /translation="MSDLPKGGSFLFGETRFQDVFTPEDFTLEHKMLYRTAMGFVTDR VLAVMEELEEKRDGLNKQLIQEAGELGLNGLDIPEEYDGLDLDKISTTIVAECIGKGG SFAMTQGGHTGIGSMPIVMFGTHEQKKKYLPGIVSGEKAGAYALTEPGAGSDAMSAKT RADLSPDGKYYLLNGTKQFITNSAFADLFIVYAKIAGDKYTAFIVDADSEGLSLGPEE KKMGIKGSSTRQVILDNVKVPVENILFEIGRGHIVAFNILNLGRYKLAANALGASKHA LELAAAYANERKQFGTPIANFGLIKEKLAKMAIKTYVMESMLYRTGGLLDGILHGLDT SGENGGQVAAKGIEEYALECSMNKIFATEAQGYVVDEGVQIHGGYGYCSEYSIERLYR DARIYRIFEGTNEINRTIIPITLLRRADKGDLPLQEAVQKLKEYIAAGGAAREDEAGL IQAAKDMFLLTMAAGLQKYGKNLQKEQEIVGKLADLAIQAFAMESAWLRTQKAVANEG ETKAKLKSWMTSAFIYGTIGYLESIAKEILSALAEGQELESLLKDLQAVTQCTLGNTI ALHRDIAAAVSEAGKYAV" gene complement(3884922..3886262) /locus_tag="Dhaf_3653" /db_xref="GeneID:7260674" CDS complement(3884922..3886262) /locus_tag="Dhaf_3653" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mta:Moth_2413 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002460106.1" /db_xref="GI:219669671" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7260674" /translation="MGKISISDVVDQIGVSKYTYKTYFLVGLTLIFCGFSYMIVSYTM PQMSAEWGLTKVQTGSLASWSLLGLMVGGMIAGIISDSIGRKKGLAIFTIWFSLLTFP IYFVNSFEAFAILRILGGVGFGACIPIAITLMAENVPTKNRGFFISSIMSFYVLGWVV AGVVAIYVVPTFGWRVCYLIGVLPVLYAFVLMAALQESPHWLLGKGREKEAIEVLKRI EMVSKGKANDYAPGSLFLPPRPKKVGVGALFSREYSRATMALWIIYFMGSVVIYGING WLPTLLVDKGYGLVKGYSFAVLQNVFGAIGGLCTGYVADIIGRRTNVIIGWIATAVAI LLLGVASNQWMVVICGMLVGLAMNWGLSGTQPLLAEGYPTEFRSTGVASAQAFGRVGG FLGPIVAGYVQQLGVGFTGTFVFFAVPAVIASFVALFFVVETKGKSIERISANA" gene complement(3886307..3887590) /locus_tag="Dhaf_3654" /db_xref="GeneID:7260675" CDS complement(3886307..3887590) /locus_tag="Dhaf_3654" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: afu:AF0020 L-carnitine dehydratase (CaiB-1)" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_002460107.1" /db_xref="GI:219669672" /db_xref="InterPro:IPR003673" /db_xref="InterPro:IPR005479" /db_xref="GeneID:7260675" /translation="MGRWKELERIPAPALTPVYGPLAGMRVLMTGSIVAAPFAASMLA EFGAEVIHVERPNVGDPYREQAPIVKRNDRKISAAWIQEGRNKLSLTLEINLKIPESK EIFLSMIKNCDVWLENMVWTEKLGITEEMLLEVNPKLVIAHISGFGRPQFGGVPEQCN RPSYDPIGQAEGGYMFVNGFPEPMPPSHAATFINDYMTAMFAVNGILMAYHHAQKTGK GQAIDVTQIESMSKVLNDTFVQYFELGRVRQRNGNKVAIFQPGNLFKTKDEKYLYIGA YGAAVYGRFIKALGLDLDKYSHETCGNSIEAINSELGLELNQKAIDWVAARDAEEALQ YLLSQKVPSGIVRTSADLAANEHYQKRGNFIEYTDETLGEKVKAFGFAPKLSVTPAQV WRGAPTLGQDTDNILSKLLGYSASEIAAFREKNVI" gene complement(3887864..3889207) /locus_tag="Dhaf_3655" /db_xref="GeneID:7260676" CDS complement(3887864..3889207) /locus_tag="Dhaf_3655" /inference="protein motif:PFAM:PF07690" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: abc:ACICU_00213 major facilitator superfamily permease" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002460108.1" /db_xref="GI:219669673" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7260676" /translation="MNRTYISEVIDQLGVSKYTYTMYILVGIALLFDGFDYMIVAYTM PQMAAEWGLSKVQTGSLTSWSLIGLIIGGLTAGIISDRIGRKKTLSIFVAMYSLLTLP IYFVHSFEVFAMLRILSGIGLGACIPIAVTMMTESAPTHKRGFFTSSIMAFYISGWVV AGIVAITIVPVFGWRVCYLLGGIPALYSLVLWFKMKESPYWLLSKGREKEAIDVVKTI EIAARGKAGEWPLGRLITPPAPPKVGVSMIFSKNYRKATLANWTIYFMGSVLIYGISG WLPTLLVESGFGVVKGYSFAVLQNIFAIIGAMSIGFFADIIGRRLNVSLSWFFTAVFA ILLGFATTQWQVILFIIIVGFLMNGALSSTQPLLTESYPTEFRSTGVAWAQAFGRLGG FSGPIAAGFIQQMGAGFTGLFIFFAIPSFIAAAVAFFFVVETKDKAIEKIVSANV" gene complement(3889568..3891496) /locus_tag="Dhaf_3656" /db_xref="GeneID:7260677" CDS complement(3889568..3891496) /locus_tag="Dhaf_3656" /inference="protein motif:PFAM:PF00158" /note="PFAM: sigma-54 factor interaction domain-containing protein; Propionate catabolism activator domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mta:Moth_0725 sigma-54 dependent trancsriptional regulator" /codon_start=1 /transl_table=11 /product="putative sigma54 specific transcriptional regulator" /protein_id="YP_002460109.1" /db_xref="GI:219669674" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010524" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7260677" /translation="MFGKIVLTSPDKKTTRLLEKIRKEYNFEIDAYEATFDDAVELIR GKVAHREHWDPIIATGGATLGLLRDNLGRMPWVNIFPTEYDLVIALEQAKKTKKTIGL FNPGQIDTEAIKAVCSAIQIDAHIYRYNSWKEVLVQVEKAYQDGVEVAIGAGEKISSA VERKNIQYVSVTSGEYTIRRAFKYAQLLVDLKRNEKVSHECIKTIADSTHEGMIHLNE NRILVNFNANAAKFFGLHEKDVIGKSVQDLSGCPSLAALLKDFDQKLNFLHHTPKGTI LVNKVPILHNHQFRGIMINFKEANQEEWEKTRATGTKGLVAKHHFRDIINNNSKMSEV ITMAMRYANTDCNVLIKGETGTGKELISQSIHNGHRQRSRKPFVAVNCASLDGSLLNS ELFGYSEGAFTGASKGGKPGLFEIAHGGTLFLDEIDKMKKDVQANLLRVLQEKEIRRI GSDQVVSVDVRIIAASNEDLLDLVRKGEFREDLYYRLNVLKLTLPPLRERRGDIPHLV RVYLQKYTEKYNKINIELPAAVLDKISHCEWYGNIRQLNHFIERCVVLCDDGNDLPEI ILMMLEEEFSTRPTLHAREEEEQDNDTINVRIRSLEEMNAEIVHRVKAKTKISNGELA LMMGISRPTLLKMLKSGR" gene complement(3891674..3893338) /locus_tag="Dhaf_3657" /db_xref="GeneID:7260678" CDS complement(3891674..3893338) /locus_tag="Dhaf_3657" /inference="protein motif:PFAM:PF00753" /note="PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mta:Moth_1069 hypothetical protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_002460110.1" /db_xref="GI:219669675" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR001587" /db_xref="InterPro:IPR004613" /db_xref="InterPro:IPR011108" /db_xref="GeneID:7260678" /translation="MPKEHKVQIIPLGGLGEIGKNMTVIRYDNQMIVIDAGLAFPEDE MLGIDIVIPDYSYLLEHKDMVQGILVTHGHEDHIGALPYLLKDLDAPIFATRLTLGLI QSKLKEGNLDNIKATVVRPRDTVKLGVFKVEFLSVNHSIPDAVALAIHTPLGTIVHTG DFKVDHTPVMGEKIDIHKFAELGDKGVLCLMSDSTNVERPGFTMSERSVGHMFEEAFN SAKDRIIIASFATNVHRLQQVITAAHHTNRKVAVVGRSMVNTVAIASELGYLDIPEDT LVDVDEVVNLPGNQACILTTGSQGEPMSALTRMAMSDHRRIEIQPGDTVIISANPIPG NEKSVSKTIDLLFKLGANVIYESYQGMHVSGHASQEELKLMLNMIRPQYFIPVHGEYR MLIKHAKLAEQMGISRENTFVADNGTIVEFTRHGASIAGKVPAGKVLIDGLGVGDVGN IVLRDRKQLSQDGILIVVMTISRSSGAIVAGPDVVTRGFVYVRESESMLEEAKDKVRQ TMNRLRENHVTEWAVLKGQVRETLSKHFYEKTRRRPMILPIIQEVE" gene complement(3893718..3894593) /locus_tag="Dhaf_3658" /db_xref="GeneID:7260679" CDS complement(3893718..3894593) /locus_tag="Dhaf_3658" /inference="protein motif:TFAM:TIGR00674" /note="TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: drm:Dred_1939 dihydrodipicolinate synthase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_002460111.1" /db_xref="GI:219669676" /db_xref="InterPro:IPR002220" /db_xref="InterPro:IPR005263" /db_xref="GeneID:7260679" /translation="MALNRIMTAMVTPFNDKMEVNYPEAEKLANYLIEHGNDGIVVCG TTGESPTVSAEEKIELFKTVKKAVGSRATVIAGIGSNTTDGSINLARQAEKTGVDGLM AVVPYYNKPSQEGLYQHFRAIAEAISLPLMVYNIPGRTSINLLPETVLRLSEIPNITS IKEAAGSMDQVSEMRRILPEDFLIYSGDDSLTLPMLSLGCDGIISVAAHVVGDEIKQL VDAWFNGEPQTALQWHLKLMPMFKGVFVTTNPVPVKYLLKKAGINAGGVKLPLVCAAP EEEAFLDDLYQKIKG" gene complement(3894623..3895852) /locus_tag="Dhaf_3659" /db_xref="GeneID:7260680" CDS complement(3894623..3895852) /locus_tag="Dhaf_3659" /EC_number="2.7.2.4" /inference="protein motif:TFAM:TIGR00656" /note="catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive" /codon_start=1 /transl_table=11 /product="aspartate kinase I" /protein_id="YP_002460112.1" /db_xref="GI:219669677" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001341" /db_xref="InterPro:IPR005260" /db_xref="GeneID:7260680" /translation="MRVLVQKFGGTSVSSAERRAQVAAKVSEAVREGYSPVVVVSAIG RSGDPYATDTFINLVNGITLESPKREMDLLMSCGEIISGVVLTSTLKSMGLEAILLTG GQAGIITNDCYGDARIIRVEPKGILDHLSEGRVVVVTGFQGVTEDGQVTTLGRGGSDT TASALGVALNAEAIDIYTDVEGIMTADPRIVEDARILDVVTYNEICHLAHQGAKVIHP RAVEIAMQRNIPIWIKCTFSDARGTLVTSIQPDMGAGTDITGDRTITGIAHTPNVTQI QVPTHDVADVLQVDKQIFKGMALADISVDFISVQPESVLYTVPDEIAEKAMKILDNLG FKPTAVPGCAKVSIVGAGIAGVPGVMANMVEALSDAGVRILQSADSHTTIWVLVNKED MVPAVQALHKKFLLGAC" gene complement(3895987..3896976) /locus_tag="Dhaf_3660" /db_xref="GeneID:7260681" CDS complement(3895987..3896976) /locus_tag="Dhaf_3660" /EC_number="1.2.1.11" /inference="protein motif:TFAM:TIGR01296" /note="KEGG: pth:PTH_1286 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="YP_002460113.1" /db_xref="GI:219669678" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR005986" /db_xref="InterPro:IPR012280" /db_xref="GeneID:7260681" /translation="MPNVAIVGATGAVGQEFLKILVERNFPVEELRLLATKRSAGKKI LWQGREIEVQETTHDSFKGIDIALFAGGSSSTEFAPSAVKSGAVVIDNSSAYRLDPEV PLVVPEVNPEDVKWHKGIIANPNCSTIIMAVALKPIFDLAGIKRVVVSTYQAVSGAGR EGIEELEDQVRNWVQGEEVKSQTFPYQIAFNLIPRIDVFQEGDYTKEEWKMVKETQKI FHVDTMPITATTVRVPVLRSHSESINIETERSVGLDEVKAAFQKAPGVIVEDNPAEDR YPMPWFTSDTDEVYIGRIRKDFSIENGINLWVVGDQIRKGAATNTIQIAELLL" gene complement(3897074..3897661) /gene="spoVFB" /locus_tag="Dhaf_3661" /db_xref="GeneID:7260682" CDS complement(3897074..3897661) /gene="spoVFB" /locus_tag="Dhaf_3661" /inference="protein motif:TFAM:TIGR02852" /note="involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme" /codon_start=1 /transl_table=11 /product="dipicolinate synthase subunit B" /protein_id="YP_002460114.1" /db_xref="GI:219669679" /db_xref="InterPro:IPR003382" /db_xref="InterPro:IPR014214" /db_xref="GeneID:7260682" /translation="MKLDGLKIGFAVTGSHCTLHEITEVMRKMVEEGADLTPIISYAV DTMDTRFGKAEDWKKKFEEITQKKVIQTIPDAEPIGPQKKFDCLLIAPCTGNTLAKLA NGITDTPVLMAAKAHLRNQRPLVIAVSTNDGLGLNARNIGTLLCTKNIFLVPFGQDSP ATKANSLVAHMDKIPDTILMAYEGKQIQPILVDYH" gene complement(3897680..3898591) /locus_tag="Dhaf_3662" /db_xref="GeneID:7260683" CDS complement(3897680..3898591) /locus_tag="Dhaf_3662" /inference="protein motif:TFAM:TIGR02853" /note="catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance" /codon_start=1 /transl_table=11 /product="dipicolinate synthase subunit A" /protein_id="YP_002460115.1" /db_xref="GI:219669680" /db_xref="InterPro:IPR006151" /db_xref="InterPro:IPR007698" /db_xref="InterPro:IPR014215" /db_xref="GeneID:7260683" /translation="MSAGLTGIRVAVIGGDDREIYMIPELQKLGAYIVGVGFEKAAPI QGVTLLSSPLEAVEKADVLLFPMYGTDERGDVKAKYSETPIVLNKELLKAVSPKVPLF IGWARPALKSAAEMLGIQIVETANLDQLAILNSIPSAEGAIQMAMEASPITIHGSESF VLGLGRCGWTLARTLKGMGAHVTGVARKPADLARALEMGLEAVHFADLDEKIGKAELI FNTVPHLILDKVMLEQVNHEAVIIDIASLPGGTDFEYAKAKGIKAMLAPGLPGKVAPK AAGKILAQVYPQLILRHLTTKNASLKF" gene complement(3898676..3899479) /locus_tag="Dhaf_3663" /db_xref="GeneID:7260684" CDS complement(3898676..3899479) /locus_tag="Dhaf_3663" /EC_number="1.3.1.26" /inference="protein motif:PRIAM:1.3.1.26" /note="catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate reductase" /protein_id="YP_002460116.1" /db_xref="GI:219669681" /db_xref="InterPro:IPR000846" /db_xref="InterPro:IPR011770" /db_xref="GeneID:7260684" /translation="MKKIRVFVSGAGGKMGREVVRTILDQEDMQLVGASDARQQGRDI GELLAMAPLGIEITGPLEVAHLKETRADIMVDFTNPQSVLKNAKCALAAGVVPVLGTT GLDEADISEIRDLVDQTKVGAFIAPNFAIGAILMMRFAQEAAKYFPHVEIIELHHDQK LDAPSGTALKTVEWISEVRKPLVQGHPNEYEKIKGSRGGDVDGIHIHSVRLPGFIAHQ EVIFGGLGQALTIRHDALSRETYMPGIMLAVRKASQLSNLVIGLENFLE" gene complement(3899636..3899917) /locus_tag="Dhaf_3664" /db_xref="GeneID:7260685" CDS complement(3899636..3899917) /locus_tag="Dhaf_3664" /inference="protein motif:TFAM:TIGR02888" /note="TIGRFAM: sporulation protein, YlmC/YmxH family; KEGG: hmo:HM1_2326 hypothetical protein" /codon_start=1 /transl_table=11 /product="sporulation protein, YlmC/YmxH family" /protein_id="YP_002460117.1" /db_xref="GI:219669682" /db_xref="InterPro:IPR014238" /db_xref="GeneID:7260685" /translation="MLLSDLAGKEIINLFDGAKLGLVGDADLAISASGAIEAIILTSR SGFSGLWGNNERDRDILVIPWEAIKKVGSEVIIVDMSGRTERINKGSLL" gene complement(3899930..3900232) /locus_tag="Dhaf_3665" /db_xref="GeneID:7260686" CDS complement(3899930..3900232) /locus_tag="Dhaf_3665" /inference="similar to AA sequence:KEGG:Daud_0938" /note="KEGG: dau:Daud_0938 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460118.1" /db_xref="GI:219669683" /db_xref="GeneID:7260686" /translation="MQALGLFLLAAGILASLRSRRYLLMWRTDTKPSLLSAAITQLVG TAGGIYLSLELLFSFLKIPENWWNPSTFIVEPLAVISLALAIVQPFAVQLWLKIKK" gene complement(3900301..3900756) /locus_tag="Dhaf_3666" /db_xref="GeneID:7260687" CDS complement(3900301..3900756) /locus_tag="Dhaf_3666" /EC_number="3.6.1.23" /inference="protein motif:TFAM:TIGR00576" /note="KEGG: pth:PTH_1279 dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase" /codon_start=1 /transl_table=11 /product="deoxyuridine 5'-triphosphate nucleotidohydrolase Dut" /protein_id="YP_002460119.1" /db_xref="GI:219669684" /db_xref="InterPro:IPR008180" /db_xref="InterPro:IPR008181" /db_xref="GeneID:7260687" /translation="MNSIKVKIAYVRKDKAPKLPQYATPGAAGVDLQASLDQELTIEP GQIVKIPTGLAIELPHAGVGAFVFARSGLASKYGLALANGVGVIDSDYRGEILVAVIN QGSEPFVVKDGDRIAQMVFLPVFIGEFYLADQLDETGRGCGGFGSTGVS" gene complement(3900771..3902045) /locus_tag="Dhaf_3667" /db_xref="GeneID:7260688" CDS complement(3900771..3902045) /locus_tag="Dhaf_3667" /inference="protein motif:PFAM:PF05193" /note="PFAM: peptidase M16 domain protein; KEGG: drm:Dred_1947 peptidase M16 domain-containing protein" /codon_start=1 /transl_table=11 /product="peptidase M16 domain protein" /protein_id="YP_002460120.1" /db_xref="GI:219669685" /db_xref="InterPro:IPR001431" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011765" /db_xref="GeneID:7260688" /translation="MYQKTVLPNGVRIITEEIDYVRSVAVGIWVGAGSRDEREGYEGI SHFIEHMFFKGTKNRTARDIAESLEAVGGQLNAFTTKEYTCYYAKVLDEDMDLAMDVL NDMFFESLFDENEIEKEKKVVIEEIKMYEDSPDELIHDLFSDHVWNDHPLGRPILGTE ESVKGLSREKILDFMDHHYAPDNLVIAVAGKIKHDEVLKKLAPLYGEFKRGGRRILEE TPKGQQVQEMILKDTEQMHLILGVPGLGQEDEDLYPMHILNNILGGGLSSRLFQEIRE QRGMAYTVFSYHSTYVDTGLFAIYAGTTPSNSQEVVECVLAEILDIKKNGISQSELQR TKSQIKGGLYLGLESASSRMSRLGKTELTYNRVISPEEVVEKLERVTVEDTKRVINRL WKRDKISLLMLGPAGNEVDMDALFEKIGWDEE" gene complement(3902051..3903190) /locus_tag="Dhaf_3668" /db_xref="GeneID:7260689" CDS complement(3902051..3903190) /locus_tag="Dhaf_3668" /EC_number="3.4.16.4" /inference="protein motif:PRIAM:3.4.16.4" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pth:PTH_1277 D-alanyl-D-alanine carboxypeptidase" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_002460121.1" /db_xref="GI:219669686" /db_xref="InterPro:IPR001967" /db_xref="InterPro:IPR012907" /db_xref="GeneID:7260689" /translation="MFKQKWTQAGVCVLISLSLSAAPVYAQTTDTNQGLIPTSSLAIT ADAAVLMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKPDELVVVSEKAAAVG ESTIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAK NTHFENTNGLPSKNHVSTAYDLALMARYGLQIPAFTSITRLKETEIHFIEPDFFMNLR NTNKLLWNYPYTDGVKTGTTTAAGKCLVAAATKDGRQLIAVVLHAPDRFGDAQKLLEW GFNETETLNYVQAGETIEFPAENSEPIKAFAQNPIQISILKTDKEKLEKKIVWTREPG LPIKAGDSLGAYEVWLNGEKLGSTPLYAESSVKPKGRLSNLLEGK" sig_peptide complement(3902051..3902131) /locus_tag="Dhaf_3668" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 27" gene complement(3903212..3903964) /locus_tag="Dhaf_3669" /db_xref="GeneID:7260690" CDS complement(3903212..3903964) /locus_tag="Dhaf_3669" /inference="protein motif:PFAM:PF01522" /note="PFAM: polysaccharide deacetylase; KEGG: pth:PTH_1276 xylanase/chitin deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_002460122.1" /db_xref="GI:219669687" /db_xref="InterPro:IPR002509" /db_xref="GeneID:7260690" /translation="MYVFKIPFKTLKLFGLILVLAVGLLIEQRVVGIVANLPTPIDQV KTEKKVMALTINVDWGGEFVPGILEALDKYHAKATFFLTGRWAKNNPEMVKELQARGH AIENHGYSHPHPDQISVSANQEEILKTEAIIQEITGTKTKYYAPPYGEKGASGLKAAE NLGYTTILWTLDTVDWRPESTPEIITKRIVDPAVRFGIKPTREGAIVLMHPKENTVKA LPNILSQLTKEGFQFITVNELITLEGVGDTTS" gene complement(3904034..3906205) /locus_tag="Dhaf_3670" /db_xref="GeneID:7260691" CDS complement(3904034..3906205) /locus_tag="Dhaf_3670" /EC_number="2.7.7.8" /inference="protein motif:PRIAM:2.7.7.8" /note="KEGG: hmo:HM1_2322 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein" /codon_start=1 /transl_table=11 /product="polynucleotide phosphorylase/polyadenylase" /protein_id="YP_002460123.1" /db_xref="GI:219669688" /db_xref="InterPro:IPR001247" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR015847" /db_xref="InterPro:IPR015848" /db_xref="GeneID:7260691" /translation="MTQEVLERSIQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAF ATGSAQPREGIDFFPLTVEFEERLYAAGKIPGGFIKREGRPSEKAILSARLIDRPIRP LFPEGYRNDVQVVAQVMSVDQDCASDITGINAASAALTISNVPFEGPVAAVTVGLIGD EFIINPTVEQSEKSVMHLTVAGTKDAVMMVEAGAQEVPEAQMLEAIMFGHREIQRIAE FIENYRLEALERNLAKPKQEVVMKQMPEEIVQAVKAFAYDKMDQAVRTEEKKAREEAI RQVKEEALAHFAEQYPEDLKTIDKILEDFVHKIVRRLITVEHIRPDGRALDEIRPISV EVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEESKRYMHHYNFPPYSV GETRPMRGPGRREIGHGALAERALLPVIPNENDFPYTIRLVSEVLESNGSSSMASVCG STLSLMDAGVPVKSPVAGIAMGLISEENHIAILSDIQGMEDHDGDMDFKVAGTSQGVT ALQMDIKIKGVSREILERALTQAKEGRLFILDKMLSVIEKPRPELSPFAPRIITASIH PDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFISAVDGEAGENALKIIQALTQEV EVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHISQLAHGRVEKVEDVVKLGDE ILVKATGIDKQGRLNLSRKEALPNPNPNPNGSTANKNPRNS" gene complement(3906468..3906734) /gene="rpsO" /locus_tag="Dhaf_3671" /db_xref="GeneID:7260692" CDS complement(3906468..3906734) /gene="rpsO" /locus_tag="Dhaf_3671" /inference="protein motif:PFAM:PF00312" /note="primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S15" /protein_id="YP_002460124.1" /db_xref="GI:219669689" /db_xref="InterPro:IPR000589" /db_xref="InterPro:IPR005290" /db_xref="GeneID:7260692" /translation="MMTAEKKKEIIAKFQQHEGDTGSPEVQIALLTERITYLTEHFKT HKKDHHSRRGLLKMVGQRRALLNYLKDMDFNRYRKIISDLGLRR" gene complement(3906855..3907811) /locus_tag="Dhaf_3672" /db_xref="GeneID:7260693" CDS complement(3906855..3907811) /locus_tag="Dhaf_3672" /inference="protein motif:TFAM:TIGR00083" /note="TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: drm:Dred_1953 riboflavin biosynthesis protein RibF" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibF" /protein_id="YP_002460125.1" /db_xref="GI:219669690" /db_xref="InterPro:IPR002606" /db_xref="InterPro:IPR015864" /db_xref="InterPro:IPR015865" /db_xref="GeneID:7260693" /translation="MQIIQELPSDPGHQCVLALGNFDGVHLGHQRLLKSGLEQAAQKG VDLAVLLFEPHPLKLLFPERVLGFLTTQKEQMRLFSEIGVDRVYLVPFTKEMADTSPE GFVRDILVKLGVIHIVVGFNYSFGALGKGTAEDLQCYGQDYGFGVSVLQPQTFEGKVI SSTAVRKALLNGDAVQAKKLLGRTYKLVGTVVEGERRGHDLGYPTANLRIYEELIIPK RGVYAVWAEIEGRLVHGMMNIGMKPTFHEEYALTVEIHFFDFSGDLYGMELAICCEEK IRDERKFNGFDELKGQLERDALKTKQVLEEIFGNPVQAVNAH" gene complement(3907856..3908740) /locus_tag="Dhaf_3673" /db_xref="GeneID:7260694" CDS complement(3907856..3908740) /locus_tag="Dhaf_3673" /inference="protein motif:TFAM:TIGR00431" /note="TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cth:Cthe_0988 tRNA pseudouridine synthase B" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="YP_002460126.1" /db_xref="GI:219669691" /db_xref="InterPro:IPR002501" /db_xref="InterPro:IPR014780" /db_xref="GeneID:7260694" /translation="MDGVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGV LPICVGKATRLAEYITNQGKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLI PQYLGSIRQIPPMFSAVKHQGKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPK AIFEVDCSKGTYIRTLCHDMGQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQ DDYSFLIPYIQVLDLPRVSLSPQRALAFRNGLSTAKSQIEVGAEIGEGCEVQVFSEGN FLGIGIWREQALCPYKVF" gene complement(3908724..3909704) /locus_tag="Dhaf_3674" /db_xref="GeneID:7260695" CDS complement(3908724..3909704) /locus_tag="Dhaf_3674" /inference="protein motif:PFAM:PF01368" /note="PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tte:TTE1391 exopolyphosphatase-like protein" /codon_start=1 /transl_table=11 /product="phosphoesterase RecJ domain protein" /protein_id="YP_002460127.1" /db_xref="GI:219669692" /db_xref="InterPro:IPR001667" /db_xref="InterPro:IPR003156" /db_xref="GeneID:7260695" /translation="MINSVITQMAEELRKASKVALFSHVSPDGDCIGSMLGIGLALEA LGKEVAMFNPDPIPRNLSFLPGVDKITQSMPDPLPETLLFVDCADLQRVQLQREDLPA DAVILNLDHHISNQNFGRINWVDSQAAASGELAYVLVRRLNVELTQEIAANLYTALLT DTGSFKYANTTAKTHQIAGELMETGISLGDIHHFVFDQTPMVKLELLRRGLNQLQFFA EGQLGMMTLRKQDFEESGAEESLSEGLIDHARTVEGVEVAVLLKEVKPDVVRVSLRSN RWFDVNRIADGFGGGGHQRAAGCTLHLSLEEAKQKVRQIIEEELKLGRSH" gene complement(3909694..3910071) /gene="rbfA" /locus_tag="Dhaf_3675" /db_xref="GeneID:7260696" CDS complement(3909694..3910071) /gene="rbfA" /locus_tag="Dhaf_3675" /inference="protein motif:PFAM:PF02033" /note="associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="YP_002460128.1" /db_xref="GI:219669693" /db_xref="InterPro:IPR000238" /db_xref="GeneID:7260696" /translation="MAKHRSNRLAETLKQEISQLIREELKDPRIGFVTVTSVEVADDL GNAKVYVSVLGDSQQAKDSLDALKRAAGFVRSEIGKRVRLRHAPEIVFKYDTSIEHGA HIAQLLRGVKQEEEKDEGESHDQ" gene complement(3910096..3913011) /locus_tag="Dhaf_3676" /db_xref="GeneID:7260697" CDS complement(3910096..3913011) /locus_tag="Dhaf_3676" /inference="protein motif:TFAM:TIGR00487" /note="TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: drm:Dred_1957 translation initiation factor IF-2" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="YP_002460129.1" /db_xref="GI:219669694" /db_xref="InterPro:IPR000178" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006847" /db_xref="InterPro:IPR013684" /db_xref="GeneID:7260697" /translation="MSIRVHELAKELNLSSKEVMSRLESIGVDVKNHLSAVEDQDANR LRTRIQKPQGKEQAVEPRKSVPSQESKNLTQGPAEGNRDKSQGLQVESSRVEGEGRPQ GQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDR PQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMG DRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRP MGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPPQRPPATP GTPAVEQPPKRQIGEKKKPQDRNFERKKEMEKEIRAPRGNRRNVKAAPREIRDTAPKH IVIPESLTVQDLAAKMSRKSGEVIKKLMDMGVMATINQEIDSETAVIIAGEMGVTVEV KIEKPITVIEEIEDDPAELRSRPPVVTVMGHVDHGKTSLLDAIRTTKVTASEAGGITQ HIGAYQVEINGQKITFLDTPGHEAFTAMRARGAQVTDIAILVVAADDGVMPQTVEAIN HAKAADVPIIVAINKIDKEESNPDRVKQELTEYGLVVEEWGGDTIAVPVSAKARMNIE QLLEMVLLVAEIKELKANPNRSATGTVIEAELDKGKGPVATVLVSKGTLNVGDIILAG SSFGRIRAMVDDKGRRVKKAGPSTPVEVQGLNEVPKAGQVFNVVDDEKHARQIAEARA NERKAEEVRQTTKVSLEDLFDRIKEGEVKELNVIIKADVQGSIEALKQSLLRLSTSEV RVNPIHGGVGAITETDIMLAAASNAIIIGFNVRPDANTKATAELQGVDMRLYRVIYDA IEDVKAAMTGMLDPDFKEVVQGRAEVRQVFKVPKVGTVGGSYVLNGKITRHSKIRVIR DGIVIHEGELESLRRFKDDAKEVVEGYECGIGVANFNDIKEGDIIEAFIMEEVKRQL" gene complement(3913055..3913351) /locus_tag="Dhaf_3677" /db_xref="GeneID:7260698" CDS complement(3913055..3913351) /locus_tag="Dhaf_3677" /inference="protein motif:PFAM:PF01248" /note="PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: hmo:HM1_2312 ribosomal protein L7AE family protein" /codon_start=1 /transl_table=11 /product="ribosomal protein L7Ae/L30e/S12e/Gadd45" /protein_id="YP_002460130.1" /db_xref="GI:219669695" /db_xref="InterPro:IPR004038" /db_xref="GeneID:7260698" /translation="MLERIYSLLGLARRAGKITSGESQIEVMLKKGKGFLLILAEDAP GTHKKYGKWAEDLRLPVLILGTKQDLGMAIGLSPRSTVLIMDEGFAKAILKIRS" gene complement(3913345..3913614) /locus_tag="Dhaf_3678" /db_xref="GeneID:7260699" CDS complement(3913345..3913614) /locus_tag="Dhaf_3678" /inference="protein motif:PFAM:PF04296" /note="PFAM: protein of unknown function DUF448; KEGG: chy:CHY_1768 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF448" /protein_id="YP_002460131.1" /db_xref="GI:219669696" /db_xref="InterPro:IPR007393" /db_xref="GeneID:7260699" /translation="MKTRKIPLRMCLGCQEMKPKKELIRVVRTPEGAVELDLTGKRNG RGAYICPDIECFKAAVKGKRFQKALEIELAPQVIEELERKLGREC" gene complement(3913624..3915105) /locus_tag="Dhaf_3679" /db_xref="GeneID:7260700" CDS complement(3913624..3915105) /locus_tag="Dhaf_3679" /inference="protein motif:TFAM:TIGR01953" /note="TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; KEGG: hmo:HM1_2310 transcription termination factor NusA" /codon_start=1 /transl_table=11 /product="NusA antitermination factor" /protein_id="YP_002460132.1" /db_xref="GI:219669697" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR010213" /db_xref="InterPro:IPR013735" /db_xref="GeneID:7260700" /translation="MNMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQN VRVHIDRMTGEFKVFARKNVVEEVEDSRTQVSMEEAQKIDPNYAIDDVVEYEVTPREF GRIAAQTAKQVVVQRIREAERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAI LTAQEQIPGETYQPFERIKTFVVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDG LVEIKGVSREAGARSKIAVYSRDANVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYS TDPEEFVANALSPAKVVGVYPKPNEKVALVVVPDYQLSLAIGKEGQNARLAAKLTNWK IDIKSESQALAQNLIPDKNEVQGEYEEYDEFADYAEYENYDEYEDYSEYDDYEENEDY DENATYGENYDDELVYDENDQYEEFDAYQNEELPYEESEDYAATPDNGEPKAENAEEN YAYTESGDKEERLTERDRSMMKYFEADEKNSRKEKKKKAKGKR" gene complement(3915152..3915610) /locus_tag="Dhaf_3680" /db_xref="GeneID:7260701" CDS complement(3915152..3915610) /locus_tag="Dhaf_3680" /inference="protein motif:PFAM:PF02576" /note="in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460133.1" /db_xref="GI:219669698" /db_xref="InterPro:IPR003728" /db_xref="GeneID:7260701" /translation="MGESIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDK EGGVDIDDCTNVSHLVSEVLDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVR VLTKEVYQGYKEFTGYLVGLIEDDIVLEYEKERMAIPRAIVDKANLTFEF" gene complement(3915798..3916676) /locus_tag="Dhaf_3681" /db_xref="GeneID:7260702" CDS complement(3915798..3916676) /locus_tag="Dhaf_3681" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bha:BH3611 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460134.1" /db_xref="GI:219669699" /db_xref="GeneID:7260702" /translation="MNKKIVSLMLVLICTMTLVACSTGTANVNQEKSPQQIAEESFAK WYGLKSYDMDMTMNMKFSVEDEVLDMSMTGKGTVFQNPMKMKMVMETTIPGMGQKMTI EQYAEQNEQKMAIYQNIENNWQKITFDDPAMMETMYMDPKDNLKLFMDHLVSAEIIGE EKIDGKDALKIKLVASGDIFDQIFQETAGDMLGLGNGLISADVFSQIGDMVYTIWVDK ATLDTLKCQMDLSENMRNLGKALAEEPNMPAEIKDIFANAEIFMEYTILNPNNAQDFT IPEEAINAPEMELPAS" sig_peptide complement(3915798..3915878) /locus_tag="Dhaf_3681" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.417 at residue 27" gene complement(3917030..3917155) /locus_tag="Dhaf_3682" /db_xref="GeneID:7260703" CDS complement(3917030..3917155) /locus_tag="Dhaf_3682" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460135.1" /db_xref="GI:219669700" /db_xref="GeneID:7260703" /translation="MDIKIKKILLYLTNTIVVLLALSSFYLVALALYSNLLRMLP" sig_peptide complement(3917030..3917119) /locus_tag="Dhaf_3682" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.596 at residue 30" gene complement(3917378..3917689) /locus_tag="Dhaf_3683" /pseudo /db_xref="GeneID:7260704" gene complement(3918429..3919493) /locus_tag="Dhaf_3684" /db_xref="GeneID:7260705" CDS complement(3918429..3919493) /locus_tag="Dhaf_3684" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460136.1" /db_xref="GI:219669701" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7260705" /translation="MRAVFRKGSKIKIRRTGSLILALVMCFTMTVQAAVVSAYEGNFD EVYKAEPIDTCQETFFRGDTYVKSEEFDDIYEDGNQYVMVIKSADEGSTQSVIIPVDR KNVEFSNAAAVEAFMSRENIPKEAIDSFNEKYQLYLEADEENIAPPALVLFEPAEAMV NKANGDPDQITYYTYNGWPMMTYQFNYTNLSSNWKTIKTGTATKDTASLVKEVSLSLG SILKGKLSFFSSGVSVLNAFLNHYGLTSTQVSKNVEDYFSARLVWDQVEKYTMRDFGG LTGWQTGLVTYKVTIKRLGQETYFANTGKVPYLTDRTFNEEVKSDHFDNPWATAFANG TYTVWEYISWSAGSVRYDFS" sig_peptide complement(3918429..3918530) /locus_tag="Dhaf_3684" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.959 at residue 34" gene complement(3919622..3919852) /locus_tag="Dhaf_3685" /db_xref="GeneID:7260706" CDS complement(3919622..3919852) /locus_tag="Dhaf_3685" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460137.1" /db_xref="GI:219669702" /db_xref="GeneID:7260706" /translation="MKIKTADMVQTILWGLIAVSWLIGYIFENGIALIVCVGLLMIII IIRILFWRCPYCEKYIGRDLGKYCRNCGKELK" gene complement(3920325..3921080) /locus_tag="Dhaf_3686" /db_xref="GeneID:7260707" CDS complement(3920325..3921080) /locus_tag="Dhaf_3686" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cbe:Cbei_1480 two component transcriptional regulator, LytTR family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LytTR family" /protein_id="YP_002460138.1" /db_xref="GI:219669703" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR007492" /db_xref="GeneID:7260707" /translation="MVLRVLIVEDDANMRLILKRALFGIPNVEVVGEAGNGTEAVGLA AELEPHVIIMDVDLPGKDGVEASREILNISPDVFLVYATGHPEYMAEAFEMYAFDYLV KPYRMERLTQTITRIQKLIESKGKGIQQSREEGSNSVGIKNKIAVKIEGKLTLIDTTK IIYTTRDKRKTVIHTIDGKVTVNESLEGLEKRLAGYNFMRTHRSYLVNLDRIVEIQPL SRNEYLVIFGETKERAYITDEKYRELQIKLNFR" gene complement(3921390..3921875) /locus_tag="Dhaf_3687" /db_xref="GeneID:7260708" CDS complement(3921390..3921875) /locus_tag="Dhaf_3687" /inference="protein motif:PFAM:PF04647" /note="PFAM: Accessory gene regulator B; KEGG: cbt:CLH_1354 accessory gene regulator B superfamily" /codon_start=1 /transl_table=11 /product="Accessory gene regulator B" /protein_id="YP_002460139.1" /db_xref="GI:219669704" /db_xref="InterPro:IPR006741" /db_xref="GeneID:7260708" /translation="MGIPDLSCSIANYFGRELELDEDKTDILRYGFEVIIGEGLKVIS IFVMASLLGLTPYVLVTFLTVGTYRLFSGGYHSETYSRCFIFSMFFFLGMGKITQLLL PYFKLSVAQIITLIFIVFVWSLWIAIKWAPAETPNKPLAEDEKADKRNFLLSGSCFGF W" gene complement(3921887..3922729) /locus_tag="Dhaf_3688" /db_xref="GeneID:7260709" CDS complement(3921887..3922729) /locus_tag="Dhaf_3688" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; KEGG: dau:Daud_0745 signal transduction histidine kinase regulating citrate/malate metabolism" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase regulating citrate/malate metabolism" /protein_id="YP_002460140.1" /db_xref="GI:219669705" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260709" /translation="MDIIKKAFPLTALIMFQLLVIALFNLSINIPHEVFAKGTMVSWL LPINIILLTLTFISVAVINNTFKNLEEEIENKLRMESQEQLKELLQTMRGQRHDFSHH FQTVYGFLSVDAYDEAKQYLEESLAQISVANEMIRSDNPGLNALLYVKSGEMERYGIS FSLDIRSSITSPLKPSELNAVVGNLLDNGIQKLSNTQLPNLQIVFEACQRGGLLILAI KDNGAPVEPLHLDKLFLPGFSTKSNGQGLGLYNVKQILEKYGGEIQVENDNGLTTFRV LLPL" gene complement(3922736..3923227) /locus_tag="Dhaf_3689" /db_xref="GeneID:7260710" CDS complement(3922736..3923227) /locus_tag="Dhaf_3689" /inference="similar to AA sequence:KEGG:Clos_2475" /note="KEGG: aoe:Clos_2475 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460141.1" /db_xref="GI:219669706" /db_xref="GeneID:7260710" /translation="MEIMPLLIVLFASIPEEFLITVLGLKLFGVKIRPLIGKIVVIAI LQAAISFSVRLLPLPFGIHTILQIPLFALPLYLLLGLPYLYSLVVILISATLYTILDA SIIPFLLYWTGIPLEAVLTNTTLRLLFFIPQFMIMLLLVIIVSLKRIKIFDINNYKLV NRE" gene complement(3923518..3924078) /locus_tag="Dhaf_3690" /db_xref="GeneID:7260711" CDS complement(3923518..3924078) /locus_tag="Dhaf_3690" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460142.1" /db_xref="GI:219669707" /db_xref="GeneID:7260711" /translation="MRLKLALLLLSSLLCLLNGCASKGAPPSASNVQENSSGETESKN EAAFNRADNFLANFSQEFSDFELLDYVKGSSKNAPIMLVGVAKNLKDNTSSTLFIVDS NGIGLVGLAAGLDAAYRSEDGLKLSDNVVLLSLNVWTQAESSVEGGFLENKVRKIHDF EITVTQNEEQGGVNTVYTNKETIRSD" sig_peptide complement(3923518..3923589) /locus_tag="Dhaf_3690" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.587 at residue 24" gene complement(3924206..3924394) /locus_tag="Dhaf_3691" /db_xref="GeneID:7260712" CDS complement(3924206..3924394) /locus_tag="Dhaf_3691" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460143.1" /db_xref="GI:219669708" /db_xref="GeneID:7260712" /translation="MKKLGFIIQILGLIYMLGIAILSFSTNPPFPMFTPDSISINVIP GVVLIVLGFFLKGKKGKE" gene complement(3924576..3925889) /locus_tag="Dhaf_3692" /db_xref="GeneID:7260713" CDS complement(3924576..3925889) /locus_tag="Dhaf_3692" /inference="similar to AA sequence:KEGG:Swol_0027" /note="KEGG: swo:Swol_0027 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460144.1" /db_xref="GI:219669709" /db_xref="GeneID:7260713" /translation="MYRTAIEELHRWKAKRNKKPLIIRGARQVGKTWLMKEFGRVAFA KTVYISLDNNRRMKELFSADLDVERIVTGLELYSGQKIDPANTLLIFDEVQEVPTALT SLKYFNENAPQYQIISAGSLLGVALHQGTSFPVGKVEFLDLYPLSFTEFLNAMDKGRY VELLQKGDFDMIATFKQTYVDMLKYYYYVGGMPEVVQSFSETKDFGEVREIQQRILDA YEQDFSKHAPHDVVPRIRMLWNSIPAQLTKENKKFIYGLIKEGARAKEYEQSMLWLTD CGLVHKVHRVNAPSLPLKAYEDLKAFKLFLVDIGLLSCMVRLNQGTLLDGNELFKEFK GALTEQYVLQQLRTLKELEAYYWTNDRGSAEIDFVVDDGHKVIPIEVKAETNLKAKSL KMYQEKFRPELSIRASMADYRRENRLLNLPLYMVEMMGLLLKEAE" gene complement(3926036..3926566) /locus_tag="Dhaf_3693" /db_xref="GeneID:7260714" CDS complement(3926036..3926566) /locus_tag="Dhaf_3693" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460145.1" /db_xref="GI:219669710" /db_xref="GeneID:7260714" /translation="MKSKKRLIPFVLLVLIFSFIPLGAFAAFDDYGYNPQGRSFKGTL DNWEAFIHNQSAAAWDPEATDVMFLERKWDKRFAPMLTGEIPLQGAWQKAKLWQYLSG EQAGWTWRQELEVVYSPNQPIPGAMELTENEMGIPGFYCVKFKEWVTGPKGQKVTIED LSVDSGIIQKALKAGE" sig_peptide complement(3926036..3926116) /locus_tag="Dhaf_3693" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 27" gene complement(3926862..3927674) /locus_tag="Dhaf_3694" /db_xref="GeneID:7260715" CDS complement(3926862..3927674) /locus_tag="Dhaf_3694" /inference="similar to AA sequence:KEGG:CAC3344" /note="KEGG: cac:CAC3344 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460146.1" /db_xref="GI:219669711" /db_xref="GeneID:7260715" /translation="MFDGATLVYKYDGSFEGLMCCVFASYEHKEIPLDILPPEGQPGL FDILKTIETDHQKAQRVYDSIPIRISLEAQELVKLGFLTCTPQKERLIFLFLRLGYKV GGKVMGMLTDDNVHALQKAVRNLTCESHRYKGFVRFSIYNEALVAMIEPENFVLPLLA YHFSNRYPNEVFMIFDKTHKAALIHQAGRVEILDIEDWELPEPDEEEVEYRRLWQQFY KTIAIESRDNPRCRMNFMPKRFWKHLTEFYPEQKVKAHPIPGEQARLLGGSS" gene complement(3927653..3928960) /locus_tag="Dhaf_3695" /db_xref="GeneID:7260716" CDS complement(3927653..3928960) /locus_tag="Dhaf_3695" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: cac:CAC3343 biotin synthase related domain-containing protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002460147.1" /db_xref="GI:219669712" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260716" /translation="MDVFDKLTILTDSAKYDVACTSSGVERKGRAGSIGNTVAAGICH SFAADGRCITLLKVLLTNVCVYDCKYCINRSSNDVPRAAFTPRELADLTINFYRRNYI EGLFLSSAVIKNSNYTSELLIKTLELLRHEYRFAGYIHVKAIPGTDNEVLTRLGYLAD RVSVNIELPSQESLKLLAPDKSKEAILRPMGLIKGKITENTTDLIKYRHAPKFVPAGQ STQLIVGATPDTDYKILTLAEGLYKKYQLKRVFFSAYIPVAEHSLLPAVSVKPPLLRE HRLYQADWLLRFYGFEARELLDEGHQNFNLHVDPKCNWALNHLDQFPVEINQAPYEML LRVPGIGVTSARRILRARKIAHLDFAGLKKLGVVLKRAQYFILCKGKTLAGLKVAPHN VMQALMSERIIAGLPSQAPQQLALFEEPPLSREDVIQCLTGQL" gene complement(3929141..3929695) /locus_tag="Dhaf_3696" /db_xref="GeneID:7260717" CDS complement(3929141..3929695) /locus_tag="Dhaf_3696" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460148.1" /db_xref="GI:219669713" /db_xref="GeneID:7260717" /translation="MGRLFAVILLLIFGIIGTLFNNTHHPSGRTIEEAIERSGREVVA ILHREKVNDGEVVFYHKGINNGEAHSVAAGYVQRTNSSWKWVFGGEHTGIDEVTAQYF PSTKGYVKSPFPLAYGESLREDIASIGVLTKNSDIEKKVRIVGNGEGKIWFVFLNPSD GILTKIVGYNQVGEIIFSSDYVEP" gene complement(3929872..3930117) /locus_tag="Dhaf_3697" /db_xref="GeneID:7260718" CDS complement(3929872..3930117) /locus_tag="Dhaf_3697" /inference="protein motif:PFAM:PF05016" /note="PFAM: plasmid stabilization system; KEGG: gka:GK3104 hypothetical protein" /codon_start=1 /transl_table=11 /product="plasmid stabilization system" /protein_id="YP_002460149.1" /db_xref="GI:219669714" /db_xref="InterPro:IPR007712" /db_xref="GeneID:7260718" /translation="MIYRKEAVKFLAKQDVSAQERIAKGLAGLLEIPPSGDIKLLKGY KKLYRLRVGSYRILFEISHTERIIYIQVIDSRGGVYK" gene complement(3930104..3930361) /locus_tag="Dhaf_3698" /db_xref="GeneID:7260719" CDS complement(3930104..3930361) /locus_tag="Dhaf_3698" /inference="similar to AA sequence:KEGG:GK3105" /note="KEGG: gka:GK3105 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460150.1" /db_xref="GI:219669715" /db_xref="GeneID:7260719" /translation="MVIRKEDIHNLVERLPEDDQKTVFDFMQYLLNRSTQKEEGWEQI NQADPDDEPLTEEELRQLNSDDGYVTGEDAKREFGLQVDLP" gene complement(3930527..3932254) /locus_tag="Dhaf_3699" /db_xref="GeneID:7260720" CDS complement(3930527..3932254) /locus_tag="Dhaf_3699" /inference="protein motif:TFAM:TIGR00409" /note="TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: drm:Dred_1967 prolyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="prolyl-tRNA synthetase" /protein_id="YP_002460151.1" /db_xref="GI:219669716" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR002316" /db_xref="InterPro:IPR004154" /db_xref="InterPro:IPR004500" /db_xref="InterPro:IPR006195" /db_xref="InterPro:IPR007214" /db_xref="GeneID:7260720" /translation="MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLP LGLRVLRKIEQIVREEMDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNR EFCLGPTHEEIITDLIRGEIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDL YSFDRDEAGLAESYKKMYDAYTRIFTRCGLTFRPVEADAGAIGGTGGTHEFMVLAESG EAAVVYCPDCDYAANVEKAECKPAPVAGDAPVGAYRGVDTPGTKTIEQVAEFLKVSKS DLVKSLLYQGDDKLFLILVRGDREINEIKVNNALGPFINLQLAGPEVVLEKLGCEPGY VGPIGAPKNLTVVADLEVPLMAKAVCGANAEDKHYVDAVPEKDFRIDQILDLRMVNAG EPCPQCGSPLKEARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYGIGVSRT MAAAIEQNNDKDGIIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVEAVLD DRDERPGVKFKDADLVGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEELAGRIQG MIREALGVK" gene complement(3932245..3933339) /locus_tag="Dhaf_3700" /db_xref="GeneID:7260721" CDS complement(3932245..3933339) /locus_tag="Dhaf_3700" /EC_number="1.17.4.3" /inference="protein motif:TFAM:TIGR00612" /note="KEGG: drm:Dred_1968 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein" /codon_start=1 /transl_table=11 /product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" /protein_id="YP_002460152.1" /db_xref="GI:219669717" /db_xref="InterPro:IPR004588" /db_xref="GeneID:7260721" /translation="MERKLTKTVRIGDVIIGGGSPIVVQSMTNTDTRDIPATLAQIQA LARAGCEVVRLAVLDREAGYALGEIALKSELPVIADIHFDYQLALLAIEQGVHGLRLN PGNIGARWKVQEVVRACKEREIPIRIGVNAGSLEKEILEKYQGVTPEGMVESALGHIH LLEEEGYDKIKVSLKASHVPLMLAAYRKMSARVDYPLHIGVTEAGTVRSGVVKSAVGI GSLLAEGIGDTLRVSLTGDPVQEIPVALEILKVLGLRNRGVELISCPTCGRTQVNLAE LAEKVEDKLSHLPPLDRPLKVAVMGCAVNGPGEAREADFGIAGGKGMGLLFKKGEIVA RLSEEELLPALLAEIENYVKQYGREQHSCV" gene complement(3933352..3934416) /locus_tag="Dhaf_3701" /db_xref="GeneID:7260722" CDS complement(3933352..3934416) /locus_tag="Dhaf_3701" /inference="protein motif:TFAM:TIGR00054" /note="TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: hmo:HM1_2265 peptidase M50" /codon_start=1 /transl_table=11 /product="membrane-associated zinc metalloprotease" /protein_id="YP_002460153.1" /db_xref="GI:219669718" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR004387" /db_xref="InterPro:IPR008915" /db_xref="GeneID:7260722" /translation="MVSAIAVVFAFGLLVMIHELGHFIVARLNGIKVLEFAFGFGPKI IGFQGKETAYSLRLIPLGGFVKLYGMDAETDENGNQVLAATTDPRSFSNKKVWQRMSV IAAGPIMNLVLAIFLFMIVFAYFGIATATNTNVVGSLIEGMPAQAAGIEAGDKIVSVN GVETPTWTDLTQAIHIKPDQEVVLVVEHQGVQRALTIGTQKDPASGNGLVGISPEVVY QKTTLLEAARYGLEQTINFTRLILVTLTQMITGETKAELGGPVAIVQAIDQSAESGWE NYLGFIGILSIQLGLLNLFPIPALDGSHLVFLLIEGLRGKPMNPERQNFIHFLGFVFL MCLMLAVTYQDILKLFTGKG" gene complement(3934553..3935698) /locus_tag="Dhaf_3702" /db_xref="GeneID:7260723" CDS complement(3934553..3935698) /locus_tag="Dhaf_3702" /EC_number="1.1.1.267" /inference="protein motif:TFAM:TIGR00243" /note="catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" /protein_id="YP_002460154.1" /db_xref="GI:219669719" /db_xref="InterPro:IPR003821" /db_xref="InterPro:IPR013512" /db_xref="InterPro:IPR013644" /db_xref="GeneID:7260723" /translation="MKRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIEL QAREFKPQIIGLMEEKAARELKQRVADLDIEVVSGMEGLLRTVTDEVPDTVVTAISGR IGLEPTMEALKAGKDIALANKETLVAGGDLVMGTAQRLGRTILPVDSEHSAIFQCLEE DPRTLDKIILTASGGPFRGWSEEQLREVTPERALQHPNWAMGAKITIDSATMMNKGLE VIEAHHLFNMEYDQIDVLIHPQSVIHSMVQYCDGSVLAQCGRPDMRLPIQYALTYPTR WPNPFERLDLRGKTLSFFDPEDYDFPALKLAYACGKRGGTLPAVMNAANEVAVHAFLA RRVAYLEIIGLVDKVCSEHDVLDATDLETILNADHWARIRTEELIHS" gene complement(3935714..3936811) /locus_tag="Dhaf_3703" /db_xref="GeneID:7260724" CDS complement(3935714..3936811) /locus_tag="Dhaf_3703" /inference="protein motif:TFAM:TIGR02872" /note="TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: swo:Swol_0888 protein of unknown function UPF0118" /codon_start=1 /transl_table=11 /product="sporulation integral membrane protein YtvI" /protein_id="YP_002460155.1" /db_xref="GI:219669720" /db_xref="InterPro:IPR002549" /db_xref="InterPro:IPR014227" /db_xref="GeneID:7260724" /translation="MNLQDEPKLKQNINRLAVITFILVLLKVITFFFMEFMPVFGQVL SQFLAAFLPFIIAFFIALLLEPLVLRFMQGLKASRPIAAVLALVLAILGIGSIVFLIV VRLYTELSDLGNSFPSYGYLVGFFNNILGTIDNFIQLNPQIQISINNATQGLIDSLQG WALTGSKVLLNFISALPGVFIVLVVSVVATFFMSASYPGVKNFFSNLVPRKWKPGARS VSRALGAAVVGFVRAEVILISVTGIILTVGLLWMGNPYAFTIGFISALLDLLPIVGTG MIFVPWIVGLFILGSVSEGIKLLIIYLIATVIRQILEPKVMSQNIGIHPLATIISMYV GLKLLGGFGLILGPGLVIIYEALRKAGFFGK" gene complement(3936816..3937598) /locus_tag="Dhaf_3704" /db_xref="GeneID:7260725" CDS complement(3936816..3937598) /locus_tag="Dhaf_3704" /inference="protein motif:PFAM:PF01148" /note="PFAM: phosphatidate cytidylyltransferase; KEGG: pth:PTH_1258 CDP-diglyceride synthetase" /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="YP_002460156.1" /db_xref="GI:219669721" /db_xref="InterPro:IPR000374" /db_xref="GeneID:7260725" /translation="MLTRTLSALVLVPVLLGLTYLGGVYTALLVTTVSLIALKEALAI GQKLGFKAWTISSGIFSMLWLVLIFAGEIQWNFPLMIAWLLFAMGRAALGYPKVSLGE AGYNCFAPIYTVVLFSHLYLIRGFSEGIAWGILTFILVWATDTFAYLIGRVMGKHLLA PRVSPKKTIEGSVGGLVFCILSGILAWKMIGGAPLAGYIALSGIVAISAQIGDLFESA LKRSVNIKDSGNVIPGHGGILDRFDSLLFVIPIMYYWVLIVG" sig_peptide complement(3936816..3936896) /locus_tag="Dhaf_3704" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.928) with cleavage site probability 0.577 at residue 27" gene complement(3937609..3938379) /locus_tag="Dhaf_3705" /db_xref="GeneID:7260726" CDS complement(3937609..3938379) /locus_tag="Dhaf_3705" /EC_number="2.5.1.31" /inference="protein motif:TFAM:TIGR00055" /note="KEGG: tpd:Teth39_1220 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase" /codon_start=1 /transl_table=11 /product="undecaprenyl diphosphate synthase" /protein_id="YP_002460157.1" /db_xref="GI:219669722" /db_xref="InterPro:IPR001441" /db_xref="GeneID:7260726" /translation="MWHRFWDKKEQSKTLADQLDKNNLPRHIAIIMDGNGRWAQKRGL PRTVGHKAGVEALRDIVKACSNLGIEALTVYAFSTENWSRPKEEVNILMNLLIDYLRR ELDELHDNKVRVQMIGNMEQLPLEAQRELKRSIKKTVNNGGLILNLALNYGGRAEITC AVRQLCEKVLKKELTPEEITGELISQHLFTSGLSDPDLLIRTSGELRVSNFLLWQIAY TEIIVTECLWPDFSPDQLVEALLEFQKRERRFGGLNKR" gene complement(3938457..3939014) /gene="frr" /locus_tag="Dhaf_3706" /db_xref="GeneID:7260727" CDS complement(3938457..3939014) /gene="frr" /locus_tag="Dhaf_3706" /inference="protein motif:PFAM:PF01765" /note="Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="YP_002460158.1" /db_xref="GI:219669723" /db_xref="InterPro:IPR002661" /db_xref="GeneID:7260727" /translation="MINDVLKEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEY YGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLI PQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDV QKMTDKFVKEIDRIMGTKEKEIMEV" gene complement(3939014..3939736) /gene="pyrH" /locus_tag="Dhaf_3707" /db_xref="GeneID:7260728" CDS complement(3939014..3939736) /gene="pyrH" /locus_tag="Dhaf_3707" /inference="protein motif:TFAM:TIGR02075" /note="Catalyzes the phosphorylation of UMP to UDP" /codon_start=1 /transl_table=11 /product="uridylate kinase" /protein_id="YP_002460159.1" /db_xref="GI:219669724" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001057" /db_xref="InterPro:IPR015963" /db_xref="GeneID:7260728" /translation="METPRYRRVILKLSGEALAGSQGFGIAHEMLVTVAEQVVEIQKL GVEVALVVGGGNIWRGIAGSKQGMDRANADYMGMLATVMNALALQDAMEKAGAATRVL SAIEMRQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFSTDTTAALRAAEIEAEAILM AKRVDGVYDSDPLKNPEAKKYDRLTFLDVLSQGLGVMDSTAASLCMDNNIPLIVFDLN KKGNIRKGIMGESIGTYVGRDK" gene complement(3939854..3940507) /gene="tsf" /locus_tag="Dhaf_3708" /db_xref="GeneID:7260729" CDS complement(3939854..3940507) /gene="tsf" /locus_tag="Dhaf_3708" /inference="protein motif:TFAM:TIGR00116" /note="EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu" /codon_start=1 /transl_table=11 /product="elongation factor Ts" /protein_id="YP_002460160.1" /db_xref="GI:219669725" /db_xref="InterPro:IPR000449" /db_xref="InterPro:IPR001816" /db_xref="InterPro:IPR014039" /db_xref="GeneID:7260729" /translation="MAEVTAAQVKELRERTGAGMMDCKKALNEVGGNMDKAIDFLREK GLAAAAKKEGRIAAEGIVEAYIHGGGRIGVMLELNCETDFVANTDGFKQFARDIALQI AAAKPRYLAKADVPEEELEHEKNILRAQALNEGKPEKIVDKMVEGRISKFYKEVCLLE QEFVKDPDKTINDLVLEKTAKIGERIVIRRFTRYEMGEGIEKREEDFAAEVMKEMNR" gene complement(3940652..3941386) /gene="rpsB" /locus_tag="Dhaf_3709" /db_xref="GeneID:7260730" CDS complement(3940652..3941386) /gene="rpsB" /locus_tag="Dhaf_3709" /inference="protein motif:PFAM:PF00318" /note="one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S2" /protein_id="YP_002460161.1" /db_xref="GI:219669726" /db_xref="InterPro:IPR001865" /db_xref="InterPro:IPR005706" /db_xref="GeneID:7260730" /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMARYIFTERNGIYIIDLQ KTVRKVEEAYNYVRNLAADGGTVLFVGTKKQAQESVKEEAERCGMYYVNERWLGGMMT NFQTIQKRVSRLRELEKMEAEGVFEVLPKKEVAALRHEMEKLERFLGGIKSMKKLPDA LFVVDPRKERIAVAEARRLNIPIVGIVDTNCDPDEIDVVIPANDDAIRAVKLLTGRIA DAIIEGQQGSDEAEEAEEAAEEVVAE" gene complement(3941539..3941982) /locus_tag="Dhaf_3710" /db_xref="GeneID:7260731" CDS complement(3941539..3941982) /locus_tag="Dhaf_3710" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460162.1" /db_xref="GI:219669727" /db_xref="GeneID:7260731" /translation="MEEQVYSYQVKPLLIPGGLYLVITPLVLAVLHYGLKIAALEFNV LRVIYLLTALGIAAIWLYGRSKNFRVSDNQLVFGSLRGEHSLSPAEIRRIALFTTKQG KEIVQIKTKQQDYYLSDLYFPFPELMTELEQYIRENEIRTNFSRA" gene complement(3942031..3942819) /locus_tag="Dhaf_3711" /db_xref="GeneID:7260732" CDS complement(3942031..3942819) /locus_tag="Dhaf_3711" /inference="protein motif:PFAM:PF06018" /note="CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor" /codon_start=1 /transl_table=11 /product="transcriptional repressor CodY" /protein_id="YP_002460163.1" /db_xref="GI:219669728" /db_xref="InterPro:IPR010312" /db_xref="InterPro:IPR013198" /db_xref="InterPro:IPR014154" /db_xref="GeneID:7260732" /translation="MKNLLEKTRAISKLIQKAAGHSVDFDEMANVLSESIQSNCYIVG RRGKILGYSFMQNFGCNTMEDIVVHTERFPESYNEGLLKVTETRSNTTQVANGCVFNE KERCHFNNKITTILPILGGGERVGTLVLAKFDQDFSEADLILAEYGATVVGMEILRIK AERAEEEARKKAAVQIAVGTLSYSELEAVEHIFAELGGGDGLLVASKIADRVGITRSV IVNALRKFESAGVIESKSLGMKGTYIRVLNDYLLEELDKISHNK" gene complement(3942865..3944241) /gene="hslU" /locus_tag="Dhaf_3712" /db_xref="GeneID:7260733" CDS complement(3942865..3944241) /gene="hslU" /locus_tag="Dhaf_3712" /inference="protein motif:TFAM:TIGR00390" /note="heat shock protein involved in degradation of misfolded proteins" /codon_start=1 /transl_table=11 /product="ATP-dependent protease ATP-binding subunit HslU" /protein_id="YP_002460164.1" /db_xref="GI:219669729" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004491" /db_xref="InterPro:IPR013093" /db_xref="GeneID:7260733" /translation="MEQLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGM QEEVLPKNILMIGPTGVGKTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRD LVEISLRMVKAEKMEEVEIQAAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKE ETVTPEIERDRTFIRERLHRGELDEQVIEVEVEDNQPLLPDFLGTGMEINTNLQDMMA GMLPKKRHKRKVTVREARRILTTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIA GRDGASGPDVSRGGVQRDILPIVEGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIP ELQGRFPIRVELESLSIEDFQRILTEPQSSLIKQYSALLETEGIKVEFTENAIDELAK VAYEVNSNTENIGARRLHTIVERVLEELSFEASELPEDYTVTINREYIQHRLGNIVRN QDLSRYIL" gene complement(3944254..3944784) /locus_tag="Dhaf_3713" /db_xref="GeneID:7260734" CDS complement(3944254..3944784) /locus_tag="Dhaf_3713" /inference="protein motif:PFAM:PF00227" /note="heat shock protein involved in degradation of misfolded proteins" /codon_start=1 /transl_table=11 /product="ATP-dependent protease peptidase subunit" /protein_id="YP_002460165.1" /db_xref="GI:219669730" /db_xref="InterPro:IPR001353" /db_xref="GeneID:7260734" /translation="MFHATTIVAVKKGDQVAMAGDGQVTMGQATVMKHKARKVRRLFH GKVLAGFAGSVADAFTLFEKFENKLEEYQGNLQRAAVELAKDWRMDKALRNLEALLIV ADKQSMLLISGSGEVIEPDDGIAAIGSGGNYALAAARALVKNTDLQPAQLVQEAMEVA SSICVYTNDQIIVEEL" repeat_region 3944792..3946818 /note="IS element" gene 3945424..3946671 /locus_tag="Dhaf_3714" /db_xref="GeneID:7260735" CDS 3945424..3946671 /locus_tag="Dhaf_3714" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS116/IS110/IS902 family protein; KEGG: fgenesh4_pg.C_scaffold_8901000001; . ; K07486 transposase" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002460166.1" /db_xref="GI:219669731" /db_xref="InterPro:IPR003346" /db_xref="GeneID:7260735" /translation="MSLFVGIDVSSSDFKVRILDERGNEPVKRLRALNDQPGCEQVAR YLFDACAQVNVDRLVIGLEATSVYSWPLQMFLAEDHSLAPLQPQIYSFNPKVVANFKK AYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNY FLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVAARPLDELIDFLMEKGKRH FEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEI RHFPNTLITIPGIGPVLSAGIIAEIGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDT PLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRM VDALLRSNQIYRPHGNRGNANQA" gene complement(3946904..3947800) /locus_tag="Dhaf_3715" /db_xref="GeneID:7260736" CDS complement(3946904..3947800) /locus_tag="Dhaf_3715" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: swo:Swol_0842 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_002460167.1" /db_xref="GI:219669732" /db_xref="InterPro:IPR002104" /db_xref="InterPro:IPR004107" /db_xref="GeneID:7260736" /translation="MQADHALSLFDGHLKTQNRSQHTLMAYHKDLIQFFVFAARELGE EPEKVTVDQVDIYIVRSFLGEMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQ RIATPKLGRKLPHFLSLEELDRLIRTPDCATLLGARDQVILELLYGSGLRVSELADLN RQDIDAGSSLLRVRGKGNKERIVPLTNYALEAARQYLEMREDKQEALLLNYQGTRLSV RSIRRILDGLALEAGLSQHLHPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIY THLTKERLREVYEQNHPRAKKM" gene complement(3948593..3949906) /locus_tag="Dhaf_3716" /db_xref="GeneID:7260737" CDS complement(3948593..3949906) /locus_tag="Dhaf_3716" /inference="protein motif:TFAM:TIGR00137" /note="TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine" /codon_start=1 /transl_table=11 /product="tRNA (uracil-5-)-methyltransferase Gid" /protein_id="YP_002460168.1" /db_xref="GI:219669733" /db_xref="InterPro:IPR002218" /db_xref="InterPro:IPR004417" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7260737" /translation="MSAIKVIGAGLAGAEAAWQIARQGIEVELYEMRPVQMTPAHHTG HFAELVCSNSLKGAGLDNAAGLLKEEMRRLDSLLMRVADQYAVPAGGALAVDREQFSQ EITKLLQEHPLIQVHREEVKSLPQAGIAVIATGPLTAEDLAGEIQQVTGEDALAFYDA AAPIVTLESIDLEKAFWASRYDKGDPDYLNCPMTEEEYKRFYHELLKAETAEVKGFEK GKVFEGCMPVEVMAARGEQTLTFGPLKPVGLIDARTGQRSYAVVQLRKENRAGTLFNL VGFQTHLKWGEQQRVFRLIPGLENAEFVRFGVMHRNTFLNAPKVLKADYSLQKTPQLF FAGQITGVEGYVESTASGLVAGLNAVRRLKNLPTLIFPQETALGALARHLEGSPSVDF QPMSINYGLLPPLEVRIKAKKEKNAKISARALARLEEFKAAEGLD" gene complement(3949908..3951998) /locus_tag="Dhaf_3717" /db_xref="GeneID:7260738" CDS complement(3949908..3951998) /locus_tag="Dhaf_3717" /EC_number="5.99.1.2" /inference="protein motif:TFAM:TIGR01051" /note="KEGG: drm:Dred_1984 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="YP_002460169.1" /db_xref="GI:219669734" /db_xref="InterPro:IPR000380" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR005733" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013497" /db_xref="InterPro:IPR013498" /db_xref="GeneID:7260738" /translation="MAKTLVIVESPAKAKSISKFLSNNYTVKASMGHLRDLPKSQMGV DVDNDFEPKYIAIRGRGDLIKELRAAAKTANKILLASDPDREGEAIAWHLGHLLGLDL AEKCRIEFHEITKPAITAAIKHPRQIDSSKVDAQQARRVLDRLVGYQLSPFLWRKVKK GLSAGRVQSVAVRLICDREEEIREFIPEEYWTLTASLKSEGGVFSAKLARKGEHRIAI ASEEEMQKVLQELADQTYRVKDVRTKEKKKQPSPPFTTSSLQQEAHRKLNMSPKRTMM LAQQLYEGIELGKAGGIGLITYMRTDSVRISETAQEEAKEFIAEHYGADYYPPEPRQF KSKGRAQEAHEAIRPTSILRTPDSVKEFLSRDQLRLYRLVWERFLASQMSAAVLDTLT VEVEAGEYLFRANASTVRFPGYLAVYEDGQDENDDQEEGTLAANIQPDESLNVLQLQE KQHFTEPPPKYTEASLVRKMEEEGIGRPSTYAPTIETIQSRGYVAKEGKQLSPTELGE IVVSILKEYFPEIVDLEFTANMEKRLDDIEEGALPWKAVIRDFYGPFAESIEEADQVM GKVQIEDKVSEEICENCGRNMVIKMGRYGKFLACPGFPECRNTKPLLEEVGRPCPDCG NPLVIRRSKKGRKFYGCSTYPECEFVSWELPAPEPCPKCGGLMVVKTSKQGQKYVCTN SECRFDKQVEEQAE" gene complement(3952142..3953311) /locus_tag="Dhaf_3718" /db_xref="GeneID:7260739" CDS complement(3952142..3953311) /locus_tag="Dhaf_3718" /inference="protein motif:TFAM:TIGR00732" /note="TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mta:Moth_1025 DNA processing protein DprA, putative" /codon_start=1 /transl_table=11 /product="DNA protecting protein DprA" /protein_id="YP_002460170.1" /db_xref="GI:219669735" /db_xref="InterPro:IPR003488" /db_xref="GeneID:7260739" /translation="MCKESLKGAIKDTLIEEKLMRAMIHTIRGVGNSRLRHLIARYGS AVNALQPSKGSQHSPEEHWQQLIAQKCQEINPGEVLEALQSQGIKLIIPEEEGYPDLL RQLPDAPPLLYYKGALPVRQECLAIVGARKATPYGRAAAEALAKDIAGQGIVVVSGLA RGIDAAAHRGALAGKGITWAVMGCGLNHMYPPENQKLAEEILAKGGALWSEFPPGMPP EPQFFPARNRLISGMSRGVVVVEAALKSGALITVDFALEQGREVFAVPGPIFSQMSKG PHHLIRQGAKLVESFEDIWVEIPAFAGVDHLSPPSPDRGTESVESGKQEGKRGISSEQ QQILNQLSDVPTHIDQITMNSEVPPEQIPLALLELQLAGRIEQLPGQLYVLAYKC" gene complement(3953459..3954316) /locus_tag="Dhaf_3719" /db_xref="GeneID:7260740" CDS complement(3953459..3954316) /locus_tag="Dhaf_3719" /inference="protein motif:TFAM:TIGR02772" /note="TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: mta:Moth_1489 DNA end-binding protein Ku" /codon_start=1 /transl_table=11 /product="Ku protein" /protein_id="YP_002460171.1" /db_xref="GI:219669736" /db_xref="InterPro:IPR006164" /db_xref="InterPro:IPR009187" /db_xref="GeneID:7260740" /translation="MHTVWKGSISFGLVNVPVKMHAATETHEFHFNYLHKDCHNRIRY IKKCPHCEVEVAAENIIKGYEYEKDHYVIMEEEDLASLEAPLSRSIDILDFIDLSDID PIYYQKSYYLSPEEAAHKAYKLLCQAMSDTGKVAIAKLTMRSKQHLACLRIIDQSIMV LETMYYPAEIRHLEASWDNVSPTDTEIAMARQLIENLAAPFAPEKYRDELREQVKELI EKKVSGETYRVAAAPEPGKVVDLMEALRASIAMTDQKKQQNTAESETEEKPTKSTLTP RGRRKVKGA" gene complement(3954533..3955084) /locus_tag="Dhaf_3720" /db_xref="GeneID:7260741" CDS complement(3954533..3955084) /locus_tag="Dhaf_3720" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: aoe:Clos_2845 peptidoglycan binding domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460172.1" /db_xref="GI:219669737" /db_xref="GeneID:7260741" /translation="MKKILGVVLSLGLIVGLAGCSSQAPAATAASTPEPIKMGRVDAA AHGTNAVAIAVVAVQGDKIVGVSLDEYQFMPADKAKGLANTEGLAAKNYKDPAQVLAS KIDNNEYYSNNMKEKAGSTVAYADNFNAIVEFCEGKTISELEGILSSTPAEKMPVDTV SGSTLADTAGYIKAVVDAAKAAK" sig_peptide complement(3954533..3954622) /locus_tag="Dhaf_3720" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.976 at residue 30" gene complement(3955599..3956201) /locus_tag="Dhaf_3721" /db_xref="GeneID:7260742" CDS complement(3955599..3956201) /locus_tag="Dhaf_3721" /inference="similar to AA sequence:KEGG:Moth_1159" /note="KEGG: mta:Moth_1159 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460173.1" /db_xref="GI:219669738" /db_xref="GeneID:7260742" /translation="MNYSAAHDVALEKFRKATLEEISEYSGYPIDGNRIKIEFLDRRF EVDYPSGQFYAETTLNEEISVPTQILILHYLVNRSPAMQTGQLISYKELPGGNIYIQP FTNRAINPLVKTFGSQRSKLIQAAVALGGEVVSLGDAAVVLSVFPKVPITLVIWEADD EFPATGNILFDSSAGTVLPTEDYAVLASQVVFALRKLASQ" gene 3956416..3958755 /locus_tag="Dhaf_3722" /db_xref="GeneID:7260743" CDS 3956416..3958755 /locus_tag="Dhaf_3722" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: efa:EF1341 ABC transporter, ATP-binding/permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460174.1" /db_xref="GI:219669739" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003838" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260743" /translation="MLELKDIKKTYRVGDIETKALDGINLSFRDKEFVAILGTSGSGK TTCLNMIGGLDHYDSGDLIIKGKSTKAFKEYEWDAYRNNSVGFVFQSYNLISHISIVA NVEMGMTLSGVSKQAKRQKALDILEKVGLKEHLHKKPNQLSGGQMQRVAIARALANDP EILLCDEPTGALDSTTSVQIMDLIKGVSKDRLVIMVTHNPQLAKTYADRIIRFSDGKI IDDTNPYGAPPQPEYFHLKKTGMSFLTALNLSFRNLWTKKGRTFLTALASSIGIIGIA VILSLSTGFRSEIDEFQFDAMAEFPIIISQETQQMNANDLNNMTLEIRDRIYGTPAAS TADEIVIVDSSKNVITHKNDLSQEFIDYLENVSPDIVGSIGYTRVVQMNLLRKTEDKY LPITLSNGPPSGNMTSSSSVGLSSFPSAVSGNNSYLADNYELLNGDYPLQLTDVVLVL NNQNQIEKGTLGALGFAVEGSDRIAFSAVVGTEYRVIHNNDFYTKTSFGTYLPANDYE KNYTSEQGFTIRISGVVRPKAGTSMSMLASGIAYDDQLSQKVIDNAMDSDIVIAQRDA DYNVLSREKIDANTKELLLAYLGGDPSPYMVMVFPKDFDAKDEVINYIEQYNVGKAEE DVITFTDLAGTLSSLTKGIMDGITLVLIAFAAISLVVSMIMISIITYTSVLERTKEIG ILKALGARKKDITRVFDAETFILGVFSGVLGVMVAWSCTFPINQAIHESTGLTNASHL RLDHAVLLVILSTVITVLGGHIPARLASQKDAVEALRTE" gene complement(3958761..3959591) /locus_tag="Dhaf_3723" /db_xref="GeneID:7260744" CDS complement(3958761..3959591) /locus_tag="Dhaf_3723" /inference="protein motif:PFAM:PF01261" /note="PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; KEGG: mbu:Mbur_2015 endonuclease IV" /codon_start=1 /transl_table=11 /product="Xylose isomerase domain protein TIM barrel" /protein_id="YP_002460175.1" /db_xref="GI:219669740" /db_xref="InterPro:IPR001719" /db_xref="InterPro:IPR012307" /db_xref="GeneID:7260744" /translation="MPLLFGTAGVPLSAKERSTEAGVKRVRELQLDAMEVEFVQGVRM GEEKAQKIAQIAVEEKVALSCHGPYWINFNSQEPEKVAASRERLLHSARISKILGVKS VVFHPAFYHQDDPQVVLVRTAGELMKVREILDAEGNDVILRPETTGKPSQLGTLQEVL TLAQAVPGVLPCIDISHLHARSNGRINTYDEFCQVLEAAAESLGDRWVKHVHFHVSGI DYGVKGEKKHLILKESDLRYPELMKAFHTFGVEGLVICESPNLEEDALLLQTTYRTMA" gene 3959824..3960003 /locus_tag="Dhaf_3724" /db_xref="GeneID:7260745" CDS 3959824..3960003 /locus_tag="Dhaf_3724" /inference="similar to AA sequence:KEGG:BH0060" /note="KEGG: bha:BH0060 small acid-soluble spore protein (minor alpha/beta-type SASP)" /codon_start=1 /transl_table=11 /product="small acid-soluble spore protein (minor alpha/beta-type SASP)" /protein_id="YP_002460176.1" /db_xref="GI:219669741" /db_xref="GeneID:7260745" /translation="MSRRRSTMSDNLKQQIAQELGFSNTLNQEGFSGVSSRDCGNMVK KAIEIAERNMAGRLS" gene complement(3960082..3960513) /locus_tag="Dhaf_3725" /db_xref="GeneID:7260746" CDS complement(3960082..3960513) /locus_tag="Dhaf_3725" /inference="protein motif:PFAM:PF00011" /note="PFAM: heat shock protein Hsp20; KEGG: bld:BLi02478 hypothetical protein" /codon_start=1 /transl_table=11 /product="heat shock protein Hsp20" /protein_id="YP_002460177.1" /db_xref="GI:219669742" /db_xref="InterPro:IPR002068" /db_xref="GeneID:7260746" /translation="MALIPNDPFRMFNHYWDEMERNYLRGRGKEELSQFLYRVDVEET ADQVFVTAEIPGLEKREDLHIEVDEKLLTISGEIKRAASTSERSSHHTERYYGKFSRT LTLPAVVKADGSHASYKNGILELSFLKDRHPAARTIEVDFH" gene complement(3960582..3960776) /locus_tag="Dhaf_3726" /db_xref="GeneID:7260747" CDS complement(3960582..3960776) /locus_tag="Dhaf_3726" /inference="protein motif:TFAM:TIGR00003" /note="TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: ttj:TTHA1718 heavy metal binding protein" /codon_start=1 /transl_table=11 /product="copper ion binding protein" /protein_id="YP_002460178.1" /db_xref="GI:219669743" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006122" /db_xref="GeneID:7260747" /translation="MNQTLKVTGMTCNHCKAHVEKALLKVGGVQQVDVNLEKGEAVVA GSAGREELIKAVEDAGYNAE" gene complement(3960835..3963765) /locus_tag="Dhaf_3727" /db_xref="GeneID:7260748" CDS complement(3960835..3963765) /locus_tag="Dhaf_3727" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: gur:Gura_1532 heavy metal translocating P-type ATPase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_002460179.1" /db_xref="GI:219669744" /db_xref="InterPro:IPR001756" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006122" /db_xref="InterPro:IPR006403" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:7260748" /translation="MSKKNTAIKVTGMTCEHCVGRVKKALESLPELENVNVSLENGEA SFDWTGEGLSMARVKDVIEEAGYTVIEDQEAQQRVPVQAQGMLMKELNVYGMTCEHCV RRVKKALENLPEVADVEVSLAESKAAFRHNPAITTEAQIKEAIQEAGYSTEATESIEV TEASVPDIQESESPAQESVNEKKQLKITGMTCANCALTIEKGMAKLPGVKAATVNFAS EKLSLDYDPALLDEKTILEKVKDLGYGAYMERDEGKAQFKVSGMTCANCALTIEKKLR NTPGIQTVAVNFATESVTAEYDPNLIDLETIYEQVRDAGYTPIENKEESREDNHVKSQ RNWVIFSAVLSAPLMPMMFMPMTHGIMYTMFILATIVQFTAGLTFYRGAYHALKNRST NMDVLVAMGITAAYGYSVMTTFPHIFFEGDTFFDTSALLITFVRFGKYLEAKAKGRAG QALKRLLELQADRARLLINGEEKEVPASSVKIGDIVLVKPGEKIPVDGVIVEGQASID ESMITGESIPVDKGAGENVIGATINRSGSIKVSTTKTGKDSVLSGIIKMVEDAQGVKP PIQRLADKISNVFVPVVVAISILTFIIWYVFLDSAFVFAFTAAIAVLVIACPCALGLA TPTAIMVGSGVGLNRGILFKSAAVLEGIAKVEAIGFDKTGTLTKGKPEVTHLMAYEGY AQKDLLRIAAAGENPSIHPLAQAIVQRAKDEGIEVEEVQDYHEESGHGTLCSYQGKKL LIGNKKLMLKENIPTEAVEKDFQELANEGKTTSFVAYDGKVIGIIALADVLKESTQEA IKRLHGLGIKTFMITGDNKKVATVIGNEVGIDEVVAEVLPQDKIEIIKRYQNDGLKVA MVGDGINDAPALAQADIGIAIGSGTDVAKETGDVVLVRNDLLDVERAIRLGRKTLTKI KQNLFWALIYNTLGIPIAAGVLFPITGELLPPEWAGLAMAFSSVSVVTSSLLLSRYSK ELVD" gene complement(3963813..3964148) /locus_tag="Dhaf_3728" /db_xref="GeneID:7260749" CDS complement(3963813..3964148) /locus_tag="Dhaf_3728" /inference="protein motif:PFAM:PF02583" /note="PFAM: protein of unknown function DUF156; KEGG: drm:Dred_2141 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF156" /protein_id="YP_002460180.1" /db_xref="GI:219669745" /db_xref="InterPro:IPR003735" /db_xref="GeneID:7260749" /translation="MDKKMEHCPACHDSNSQKSERLSHHNEKTIRELANRMNRIEGQI RGIKGMIENHAYCDDVLNQIASAQAALNGVSKLLLEKHMKSCVLEQLQEGNEQVIDEL VKTMHRMMK" gene complement(3964330..3964686) /locus_tag="Dhaf_3729" /db_xref="GeneID:7260750" CDS complement(3964330..3964686) /locus_tag="Dhaf_3729" /inference="similar to AA sequence:KEGG:CKL_1450" /note="KEGG: ckl:CKL_1450 predicted transporter protein" /codon_start=1 /transl_table=11 /product="transporter protein" /protein_id="YP_002460181.1" /db_xref="GI:219669746" /db_xref="GeneID:7260750" /translation="MLGQIIISVILGAFGQILVKIGAKNLELDFAPENLLRSLGAIMQ NFPVMSGLFLYGVSFILWIKVLTKTELSYAYPFVSLGYIFIMAFSVMVFKENISFYRV LGTVLVIVGVIFISRS" gene complement(3964688..3965947) /locus_tag="Dhaf_3730" /db_xref="GeneID:7260751" CDS complement(3964688..3965947) /locus_tag="Dhaf_3730" /inference="similar to AA sequence:KEGG:CKL_2364" /note="KEGG: ckl:CKL_2364 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460182.1" /db_xref="GI:219669747" /db_xref="GeneID:7260751" /translation="MFWILLIGLLADALWVMLVPTVPFSDFSYYHHLATQIAAGGPWG DTYTSVGYPIFLGFFYKLFGSSLWVAKCLNIALSTTNNILVYFLLKKISIPGRLRNTF LLLFVLFPMNVYYNSLVASEILFTTGLLSVLLLYFSNLRWKYVGIGLLTGLNAMVKPF FPAFVLAVFLVEVLSERNFRQSLKRSGIVLLVALVVLSPWLYRNSKIFGEFCYISNNS GIVLYINNNSQNKVGGWMPAEDVADSLVKTPVYQEANALEKNKMLSAAAKEWIAGHPV EFVGLGIKRLARTFLFVGDINYALRGTALAVPSIQMFLAAPGSNWLSFFLFLTSELVR APVFWLGCLGILSYSWRVLRGFFRSGGGGPRRINKEKLTLLITFLMFAGIYFITEGQS RYAFPTVMMLIYFALWRVYQWQDEMGE" gene complement(3965947..3966903) /locus_tag="Dhaf_3731" /db_xref="GeneID:7260752" CDS complement(3965947..3966903) /locus_tag="Dhaf_3731" /inference="protein motif:PFAM:PF01040" /note="PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase" /codon_start=1 /transl_table=11 /product="UbiA prenyltransferase" /protein_id="YP_002460183.1" /db_xref="GI:219669748" /db_xref="InterPro:IPR000537" /db_xref="InterPro:IPR000834" /db_xref="GeneID:7260752" /translation="MSLMARLETLKDKKPDFDPQKKNTMQAIAQLVRPRQWVKNSFVF IGLLFTQNLNQHLILKVIIAAVAFCLVSSAVYVMNDFVDRDYDRNHPTKCKRPLASNR VTLSAAGSVFVLFLLGGLLLGWHVSKIAAGILVLYVAQNLAYTKGLKRIVLIDVFIIA LGFMMRILMGTWGVGIPPSEWLLLCGFMVALFMGFGKRCSELNELSVDAGLHRPVLER YSPGLLNQLLGITAGGVIFTYSLYTLDSATVALHHTTNLIYSVPFVIYGIFRYLYLIH KGEAGDPSKLVTKDRHLIAVVMLWVLYVLWTLKLHDLVLGVL" gene 3966897..3967619 /locus_tag="Dhaf_3732" /db_xref="GeneID:7260753" CDS 3966897..3967619 /locus_tag="Dhaf_3732" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: chy:CHY_0834 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460184.1" /db_xref="GI:219669749" /db_xref="GeneID:7260753" /translation="MTYTPYLLILNNNYSIVVAIHKYTIRYSTNPSHFLYFLIMFQKL FFALYNPKLVLYDYLESKFERDAQLIRRVDKLDNGQFQELVIQQLSTLTKSIDTLAIN QEVMQADINTMKADITDMKTDISNLKQSQVRMEKDIDAMKIDITDMKTDISNLKQSQV RMEEDIEVMKIDITDMKTDISNLKQSQARMEEDLTRKITALFDSRELQKDVNQNVSRS LERIEAKIDILQIETAYLKRIK" gene 3967760..3969283 /locus_tag="Dhaf_3733" /db_xref="GeneID:7260754" CDS 3967760..3969283 /locus_tag="Dhaf_3733" /inference="protein motif:TFAM:TIGR00368" /note="KEGG: pth:PTH_1690 ATPase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="Mg chelatase, subunit ChlI" /protein_id="YP_002460185.1" /db_xref="GI:219669750" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR001208" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004482" /db_xref="InterPro:IPR011704" /db_xref="GeneID:7260754" /translation="MFAAVHGMAVSGIQAHLIRVEVDVSNGLPEFSIVGLAKAAVRES RERVRSAIKNSGFDFPLQRITVNLAPADLKKDGSSLDLPIAIGILAATGQCSFAGLSH TVFVGELSLEGQLRPVPGILAMAVSLAPHSDYDLIVPPENLPEANLIEEIKSGSAAYL AQLVHSLETDQLFGNPQAKSSSPEVTADHPIDLSSIRGQQQAKRALEIAAAGGHNLLL IGPPGSGKTMLAKAYAGILPPLTRSESLEVTKIYSIAGLLGHNGQLIRKRPFRQPHHS ATVSGILGGGHDLKPGELILANHGVLFLDELPEFSRGVLESLRQPLEDRELTLTRQRG SVRYPARLSLVCSMNPCLCGWNGDSARVCTCTPWQISHYRGRISGPLLDRLDLHIEVP RVEFDELHRYPESETSADVQKRVLKARQCQWIRLGESRTNAEMSAGETSAFCRLDSTG EQLLRSVFDRQHLSARSHDRILRVARTIADLDSEDSILPRHLAEALQYRALDRPGAH" gene complement(3969430..3971316) /locus_tag="Dhaf_3734" /db_xref="GeneID:7260755" CDS complement(3969430..3971316) /locus_tag="Dhaf_3734" /inference="protein motif:PFAM:PF05935" /note="PFAM: Arylsulfotransferase; KEGG: lbr:LVIS_2143 arylsulfate sulfotransferase" /codon_start=1 /transl_table=11 /product="Arylsulfotransferase" /protein_id="YP_002460186.1" /db_xref="GI:219669751" /db_xref="InterPro:IPR010262" /db_xref="GeneID:7260755" /translation="MNPIKSEQIPHIIHRQKDLEEAFLAEFSAGHYTLENPLVKLNPY DICPLTAMVLFETPVATEATIIVRGKEHPGDIRHTFPADKKHILPVYGLYADYENKIE IVLANGQKNTITLKTEPLHPDVPVATSIKTTPEYMGNNLMFLTAAMKAMPVGYDYAGE VRWYATRNFAFDLKRMPNGHILIGTERLVKLPYFTTGLYEMAFSGKIFKEYRLSGGYH HDQFVMEDGNILVLTFDFYSGTVEDMCVLLDAITGEILKSWDYKRVLPQDVAGSGSQD AHDWFHNNAVWYDKKTHSLSFSGRHQDVVINLDYDTGELNWIIGDPEGWPQDMVDKYF FTPVGEGEFDWQYEQHACVVLPDGDIMLFDNGHFRAKKKENYLPNGRNFSRGVRYRID TEKMTIEQVWQYGKERGAEFFSPYICNVEYYNEGHYLVHSGGIGYENGETCEGMAVMK VLQPEFKDSVFTFNSITCELKDDVLMYELQVPANCYRAEKLPLYYAHETAELGAGEIL GNLIETQETKMKIKAVETGERVPDHYEASITEEEDRVLFNAIFEAGEMAQLLLVDGDG GVKRYPVNTVPQAFQAMCVGTFQKADPRNIDVYINKTGLSGKYQVKLIAEEKLYETGV SITA" gene complement(3971401..3972924) /locus_tag="Dhaf_3735" /db_xref="GeneID:7260756" CDS complement(3971401..3972924) /locus_tag="Dhaf_3735" /inference="protein motif:PFAM:PF00939" /note="PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter)" /codon_start=1 /transl_table=11 /product="sodium/sulphate symporter" /protein_id="YP_002460187.1" /db_xref="GI:219669752" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR004680" /db_xref="GeneID:7260756" /translation="MEPVAGADKVTASNKIILPNDKKVYIHCLIGLAIMAIFWFMAPI EPITPVGMKVVGAFLGMVYLWSAVGSLWPSLLGLTLIALSGYGGQGAVGFKAVFLNAF GADTVLLTLFAMVLFGAMDEAGCTKYIARWLLTRKIINGRPYAFMGVVWFTCYVISTL VSPITGLILMWPITLRIMDTLKIERGDKIWPFFFVGMFAVMTLGQPFFPFMGAQLIVV SAYGSMTGVPADLTPVPYVSYMALNFIMTMLLMVTYIIILKFILRPDVNKLKGVDADQ LAREQPLPPMVWPQKTMMIMIPLYLIMLLVPSFLDKSNPVVNLLATLGPLGVTIVWII FFCIIRYQGKEVLNFKEVSYKQFNWGIFFMIAAAVYGANALSNDATGVKDFLLNALNP ILGGQSEMGFVAIMFTVALILTNFANNAAMAVVLMPVVLAFCDQMGLNPMPVAMGVTM MVFVAMLTPAASPHAGMMHGRTDIYKTGEILRLGFPICLVTLVYYIFIGYPLAKMLF" gene complement(3973236..3974165) /locus_tag="Dhaf_3736" /db_xref="GeneID:7260757" CDS complement(3973236..3974165) /locus_tag="Dhaf_3736" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002460188.1" /db_xref="GI:219669753" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR001990" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7260757" /translation="MRVEQLDQIVKIHEHGSLSKAASALFISQPSLSVSVSRLEEELG LKIFERSNTGVAPTEQGEAALALARTILTLSEKIKGMMDGRKVLIRNLQMAIPGAFAN AIAPDLLVKFHEIYPEVNLHIHEAPYYEIVENMDRGAYSIGVIPCGQDGKKDLLKQLN DVEIEWEIISGGQAKLLLFLSSKNPLADKERISFSDIKSMKMISYKENYIQTSRNLRC PLHKPIIVEDIELLKRLISADFGFSIFPEILAYNDLYMSSGRIKAIPMHELSEQWDIF ILYSHHESLSFIERELLALVKELIRDNLISQIE" gene complement(3974182..3975105) /locus_tag="Dhaf_3737" /db_xref="GeneID:7260758" CDS complement(3974182..3975105) /locus_tag="Dhaf_3737" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: drm:Dred_2673 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002460189.1" /db_xref="GI:219669754" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:7260758" /translation="MRIEQLQHIIEVNNKKSISEAAKTFFMSQPQLSHSMKNLEDELG YKLFRRNRGGLIPTCQGKEVVGLAREIINTIEELKSLASGEANLTGNLSLTLAPGAFN SFAGLLITRFNEKYPNVNLMITEDIGIAIVDKVAMGTCLMGVPVWTSNDDDTMRKLLD SNDLAYEEIIEDDLCLVIGKRHPLAAKESIELADLEGMTFVDYCGRYRNLLRNCGIDT AKREFLIVYNREVMKTIIAKNQGIAVFPRFFLHNDLFFEQELLSYRAIEKITDKVKMK MYLIYSRTEPLSHSAKQLKKMLSEIIAGNPS" gene complement(3975132..3976937) /locus_tag="Dhaf_3738" /db_xref="GeneID:7260759" CDS complement(3975132..3976937) /locus_tag="Dhaf_3738" /EC_number="2.7.13.3" /inference="protein motif:PRIAM:2.7.13.3" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bcy:Bcer98_1201 multi-sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002460190.1" /db_xref="GI:219669755" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260759" /translation="MNFDLRPRSISMKLWAAITALILAVLGGLGVTITLLFGDFYFQQ TLDTLGKEVEEISHYLGEQPNWSQRLFAIDEIRLSSDTQMVVIDRYSEIIAIKGGNVA ASFGTNDRIGWGDVSGEMSWLIRSLYPSDFLSRTDIAEVLAGKVITIKAIPRNKTGQA MLIAAAPLGNPSEAIVVLGTSPAPVQDSINAFRRMTLYVSLAAVVLATLVSLVFARQV TRPLALMQKGASQMANGDFQPITGVRSRDELGELADVLNSMGESLKNHMTWLSEERNL LLGIVEGISDGVIMLDGEGEILYTNEPAKALWQGSGSEEESSERKETLMAFLRESMEG VEIDKKIHFNLDTQVLQVAMATTQFEDGKQGYVAVLRDITASLRAEKERRDFMASVTH ELRTPLHLIQGYLEAIQDGVIAKEEQTEHIDLVLEEAKRLAKLVMELQELDRFESWKN FEKKEIDLAGFIQELGYRFQGRADELGIHLQMDNGKGVIHANRDRLLQVFINLIENAF RHTPEGKSVYIRIIDSEEHIQFNVEDQGEGIPPQALPHIFDRFYRVDKSRSRKEGGMG LGLSIVMLIVEAHNGEIKVESEVGKGTTFKVILPK" sig_peptide complement(3975132..3975224) /locus_tag="Dhaf_3738" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.809) with cleavage site probability 0.593 at residue 31" gene complement(3976964..3977656) /locus_tag="Dhaf_3739" /db_xref="GeneID:7260760" CDS complement(3976964..3977656) /locus_tag="Dhaf_3739" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bha:BH1580 two-component response regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002460191.1" /db_xref="GI:219669756" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7260760" /translation="MNAILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQ DYALLIVDLMMPEIDGWKVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKP FSTKELVARVKALLRRSRGNTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFEL LYFLAKNPSRVFSREQLMETVWGYDFYGDARTVDTHVKKIREKLADPKVRSMLATVWG VGYKFDPEAVNE" gene complement(3977819..3978184) /locus_tag="Dhaf_3740" /db_xref="GeneID:7260761" CDS complement(3977819..3978184) /locus_tag="Dhaf_3740" /inference="protein motif:PFAM:PF02021" /note="PFAM: protein of unknown function UPF0102; KEGG: dau:Daud_0666 protein of unknown function UPF0102" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0102" /protein_id="YP_002460192.1" /db_xref="GI:219669757" /db_xref="InterPro:IPR003509" /db_xref="GeneID:7260761" /translation="MSEHRQALGRYGEELAVKHIRQAGLTVLECNYRCPLGEMDIIAQ EGETIIFIEVRTRSTGSRGWGEESITAKKRERLYRIATHYLKFRNYKEWPSLRFDLIA IRCQNQEGKQPDIIWIRGI" gene complement(3979088..3980578) /locus_tag="Dhaf_3741" /db_xref="GeneID:7260762" CDS complement(3979088..3980578) /locus_tag="Dhaf_3741" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01770" /note="KEGG: hmo:HM1_2206 proton-translocating NADH-ubiquinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I)" /codon_start=1 /transl_table=11 /product="proton-translocating NADH-quinone oxidoreductase, chain N" /protein_id="YP_002460193.1" /db_xref="GI:219669758" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR010096" /db_xref="GeneID:7260762" /translation="MMSFELSLLSTEIIMAVLGLGLFAVGLILPRGSRQGMFPLTLFA LLGTLAYAVYDFFYGGNAAFLQGMYMHDQFAGFFKILFLVAALLVVLSTKNYVAKFQA YRGEFYPLLLLAALGMMLMAGAGDLLTMYVGLELMTITFYILVAYHPNDPKSSEAGIK YLVLGAASSAVLLYGISLIYGLTGSTQMFTVAMSLGAEANTVTILATVMMLAGFGFKI SLVPFHMWAPDIYEGAPAPITAFLATASKAAGFAALVRFYVLMMYNHSMAEAGLILLL VLAAITMIIGNLMAFPQKNIQRLMAYSGIAQAGYIIVGVIAVSIASSVSQWGVDPVSA FVDGIKGVLFYLMIYVFANLGAFAVITHVAQSQGSTEIKDYAGLAKRSPLAAAVLTLS VLSLAGIPPLAGFVGKFYLFSAVINQGHVWIAVIGFVMSMISVYYYLSIVKIMYLGDG EGLPEVPVHGAAKFGMIFSMIVTIVLGIYPTPLAQMALTAASSLVK" gene complement(3980578..3982137) /locus_tag="Dhaf_3742" /db_xref="GeneID:7260763" CDS complement(3980578..3982137) /locus_tag="Dhaf_3742" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01972" /note="KEGG: hmo:HM1_2205 proton-translocating NADH-ubiquinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)" /codon_start=1 /transl_table=11 /product="proton-translocating NADH-quinone oxidoreductase, chain M" /protein_id="YP_002460194.1" /db_xref="GI:219669759" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003916" /db_xref="InterPro:IPR003918" /db_xref="InterPro:IPR010227" /db_xref="GeneID:7260763" /translation="MSPLALQPEVGSFILPFALLAPILAAFIIVFLPKEEGKTIKLVA ALGTLTSLLLSLYVFFAYDRSLAGMQFNLTIPLIPDIGVNLAFGVDGISIPMLLLTNL IAFTAVYSSWNIENRVKEFFVLLLILIAGVMGTFIARDLFIFFLFYEIVVIPIYIMVI IWGSTKRVTKEYAGMKLTIYLLLGSALLLVAMVSLWVNATNQLAAMGQGPTFMFDELA RLQYDETFQIICFGLLAVGFGSLISMFPFHSWSPDGYAGAPTAVSMIHAGVLKKIGGY GLIRLGLMVFPLGAKFWAPVIAVLAVVNVLYAAFIALAQKDLKYVVGYSSVSHMGYVL IAVAALNITSINGAVAMMFAHGVMSALFFSMIGFIYEKTHTRNIAELGGLAHQMPRLA VGFLLAGMAGLGLPGTVNFIGEFTIFIGTVKVLPVHAVVGIAGIIFTAVYSLRLIANV LFGPRRKEWDHLKDLRGPELVPLVVLVFVIIITGVFPNTVLQLIDTGVQSSGLAKVLE AVTQAKMGGLF" gene complement(3982137..3984092) /locus_tag="Dhaf_3743" /db_xref="GeneID:7260764" CDS complement(3982137..3984092) /locus_tag="Dhaf_3743" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01974" /note="KEGG: chy:CHY_1417 proton-translocating NADH-quinone oxidoreductase, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I)" /codon_start=1 /transl_table=11 /product="proton-translocating NADH-quinone oxidoreductase, chain L" /protein_id="YP_002460195.1" /db_xref="GI:219669760" /db_xref="InterPro:IPR001516" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003916" /db_xref="InterPro:IPR003918" /db_xref="InterPro:IPR003945" /db_xref="GeneID:7260764" /translation="MFKEMNDLFQWAWLIPFLPFLSFLLIALVTKRSKRLSSTISILA ILTSFGLSIAIGLGVIQSGSQIVENPVLTTVNWLSIGGLHIDFGTLIDPMSAMMLFVV TLVASMVQIYSIGYMHGDPGFSRYYAFQSLFAASMLGMVLATNLLQLFIFWELVGLCS YLLIGFWFFKVSAREAAKKAFITTRVGDFGLLLGILFLYNTFGTLDFYGPGSLSVQMA TSFHDFALIGGVSYLTIMAILVFIGPVGKSGQFPLHVWLPDAMEGPTPVSALIHAATM VVAGVYLVARMFFLFDNASPFALQLVAGMGAFTAIFAATIAIAQDDIKRILAYSTLSQ LGYMMFALGVGSLTASMFHLMTHAFFKALMFLGAGSVIHALHHKQNIWDMGGLWKKMP ITGTTFFIGVLAIAGIPPFAGFFSKDEILLAAYHGHPIIFAVGLFTAFLTAFYMSRLF FVAFMGEEKPENHPHESPWVMTLPLIILAFFSVVGGWVALPEHNFGYFVHYGEFHHES INWMIATISIIAGVLGIGLAYITYVTRAIKAENVVARFPGVYKLLKNKYYIDEIYLWF IHKVMDGIVAKVLYWFDLYIVDGIVNGLAALTRGSGRALRRTTTGQMQTYALVFFVAI VVIYLVFALGEGQLSALNPAAMLGGVK" gene complement(3984112..3984444) /locus_tag="Dhaf_3744" /db_xref="GeneID:7260765" CDS complement(3984112..3984444) /locus_tag="Dhaf_3744" /inference="protein motif:PFAM:PF00420" /note="PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: hmo:HM1_2203 proton-translocating NADH-ubiquinone oxidoreductase, chain K" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone oxidoreductase chain 4L" /protein_id="YP_002460196.1" /db_xref="GI:219669761" /db_xref="InterPro:IPR001133" /db_xref="GeneID:7260765" /translation="MSISVGLGSYLLVGAMLFCLGLYGVFVKRNIIAILMSIELMLNA VNINFIAFSRFAPWANPGTNPLIGQVAAIFVIVVAAAEIAVGLALVIAIYRNRRTTNV DEFNWLKW" gene complement(3984441..3984953) /locus_tag="Dhaf_3745" /db_xref="GeneID:7260766" CDS complement(3984441..3984953) /locus_tag="Dhaf_3745" /inference="protein motif:PFAM:PF00499" /note="PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: mta:Moth_0983 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone/plastoquinone oxidoreductase chain 6" /protein_id="YP_002460197.1" /db_xref="GI:219669762" /db_xref="InterPro:IPR001457" /db_xref="GeneID:7260766" /translation="MSTMATIVFFIFAIIAVASAWGVVTSKNIVHSAFFLALSFAGVA VLYVLLNAEYLAAVQLLVYAGAISIMVIFAVMLTLRGDVAESSPVTKKWTQGALVSAL VFIVLALVILTNSDWRILAMPALAGGTTVELSKLLLSWYMVPFEAAAILITVALIGAV IIAKGGHESK" sig_peptide complement(3984441..3984509) /locus_tag="Dhaf_3745" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.613 at residue 23" gene complement(3984950..3985357) /locus_tag="Dhaf_3746" /db_xref="GeneID:7260767" CDS complement(3984950..3985357) /locus_tag="Dhaf_3746" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_2991 4Fe-4S ferredoxin, iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002460198.1" /db_xref="GI:219669763" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260767" /translation="MLGKGLLTGMGIVLKKMLGPNITEFYPEVMPNLPKTVRSSMGLE PDKCISCTLCALACPNKVITLTSEKDENNKKVLKTYHMDVGRCLFCGLCTEACPTNAL TVTQEFENSVFYPEDLYWDMIERSKRNGKEGNE" gene complement(3985362..3986417) /locus_tag="Dhaf_3747" /db_xref="GeneID:7260768" CDS complement(3985362..3986417) /locus_tag="Dhaf_3747" /EC_number="1.6.99.5" /inference="protein motif:PRIAM:1.6.99.5" /note="PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: mta:Moth_0981 respiratory-chain NADH dehydrogenase, subunit 1" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (quinone)" /protein_id="YP_002460199.1" /db_xref="GI:219669764" /db_xref="InterPro:IPR001694" /db_xref="GeneID:7260768" /translation="MEAIRALNELPKNIAAAIRGLFADPYSLWADLTMTLIGMILIIV VIVISALLLIVLERKIAGWGSQRPGPNRLGPRGWFQTIADALKLLGKEDLTPANADRI MFKIAPMFIFGIPILTLTIIPFGYAMTVIDLELGVFFYLGITSVSTLALLMAGWSSNN KYSLLGGMRAVAQMISYEIPLIFSLLGVVMLTQTFNLTKIVEAQAALPFIFLQPIAFI IFLICGQAEVNRAPFDLLEADQEIIAGPFTEYTGLRWGLFYLGEYANLVAMCALATTV FLGGWQGPGVLPGWAWFWLKVGLLIFISMWVRWTFPRIRIDHLMHLAWKVLLPLALLN ILLTGLGIYIYQLVIGG" gene complement(3986442..3987554) /locus_tag="Dhaf_3748" /db_xref="GeneID:7260769" CDS complement(3986442..3987554) /locus_tag="Dhaf_3748" /EC_number="1.6.99.5" /inference="protein motif:PRIAM:1.6.99.5" /note="PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: mta:Moth_0980 NADH dehydrogenase subunit D" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (quinone)" /protein_id="YP_002460200.1" /db_xref="GI:219669765" /db_xref="InterPro:IPR001135" /db_xref="InterPro:IPR014029" /db_xref="GeneID:7260769" /translation="MTDLYNEGTEELLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPK IGYLHRGLEKIAESRTYPQFIPYTDRLDYLASPHNNLAYVQTVEKLMGLEIPERAEYL RIILAELARFASHQVFIASAALDMAGWTAWGYPFRDRERILDLFEMMSGSRLTVNCMR IGGVSAEPPAEFWPALESFLDDMPEKLEEYFNIYMGNEIAQARMKKVGILSKEVAENL CITGPALRASGVQYDVRKAEPYGIYDRFDFEVPVLYGCDTYDRNLIRFMEMNESLKII RQAVRDIPEGPIMAKVPKIIKPPAGEVYHRVENPKGELGFYIVSNGTPKPERVKIRAG AFVNLQCLNEIGVGTYIQDLIASFASLDAVLGEVDK" gene complement(3987567..3988058) /locus_tag="Dhaf_3749" /db_xref="GeneID:7260770" CDS complement(3987567..3988058) /locus_tag="Dhaf_3749" /inference="protein motif:PFAM:PF00329" /note="PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: tye:THEYE_A0913 NADH-quinone oxidoreductase chain C" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (ubiquinone) 30 kDa subunit" /protein_id="YP_002460201.1" /db_xref="GI:219669766" /db_xref="InterPro:IPR001268" /db_xref="GeneID:7260770" /translation="MGNNELLKKRVDELASRVSGTVEEILDTLVLTVKAPYITETLTA VKSFGEVPCDFLHDIGGVDKLDHFQVVYQLTSLRGPQKLRVKAIVDRDNPVIDSVTRI WAGADFMEREAYDMFGIQFKGHPNLKRIYMWDDFEGFPLRKDYVTEPAEVRNVMRVRR EDD" gene complement(3988048..3988569) /locus_tag="Dhaf_3750" /db_xref="GeneID:7260771" CDS complement(3988048..3988569) /locus_tag="Dhaf_3750" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01957" /note="The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase subunit B" /protein_id="YP_002460202.1" /db_xref="GI:219669767" /db_xref="InterPro:IPR006137" /db_xref="InterPro:IPR006138" /db_xref="GeneID:7260771" /translation="MDVAKEKELREAEALMEKNVLLTSIDKVLNWGRGHSFWPVTFGL ACCAIEMMAAGGPRVDISRFGYEVFRASPRHADVMIVAGTCTRKMAPLLRMIYDQMPE PKWVIAMGSCASAGGPFADSYSMLTGVDKIVPVDVYIPGCPPRPESLVYGLLQLQHKV NHPDKVRLLKHGK" gene complement(3988560..3988916) /locus_tag="Dhaf_3751" /db_xref="GeneID:7260772" CDS complement(3988560..3988916) /locus_tag="Dhaf_3751" /inference="protein motif:PFAM:PF00507" /note="PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: hmo:HM1_2196 proton-translocating NADH-ubiquinone oxidoreductase, chain A" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone/plastoquinone oxidoreductase chain 3" /protein_id="YP_002460203.1" /db_xref="GI:219669768" /db_xref="InterPro:IPR000440" /db_xref="GeneID:7260772" /translation="MSDNFAAVGIALVVAIAINLIMMLMPKLLAPKKPVPEKLTPYEG GNQTIGRTWLGFKSNYFLYALVFTAFDVETVFLFPWALSFRQLGTFAFIEMFVFIVIL LVGFWYAWKEGALEWM" gene complement(3989041..3989823) /gene="rnhB" /locus_tag="Dhaf_3752" /db_xref="GeneID:7260773" CDS complement(3989041..3989823) /gene="rnhB" /locus_tag="Dhaf_3752" /EC_number="3.1.26.4" /inference="protein motif:PRIAM:3.1.26.4" /note="RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids" /codon_start=1 /transl_table=11 /product="ribonuclease HII" /protein_id="YP_002460204.1" /db_xref="GI:219669769" /db_xref="InterPro:IPR001352" /db_xref="GeneID:7260773" /translation="MKGISRMSIREVSEVLNTEPSEEFLKACAQDERLGIQNLIVRYY KEWEARLVEAERIEALLREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFN LPGLNDSKKLTESKREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEG LKVRPHFLLIDALELPSLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYP EYGFAKNKGYGTREHLMALRRHGVSPIHRRSFAPVQQQLDIV" gene complement(3989923..3990753) /locus_tag="Dhaf_3753" /db_xref="GeneID:7260774" CDS complement(3989923..3990753) /locus_tag="Dhaf_3753" /inference="protein motif:TFAM:TIGR03596" /note="TIGRFAM: GTP1/OBG protein; PFAM: GTP-binding protein HSR1-related; KEGG: bcl:ABC2285 GTPase" /codon_start=1 /transl_table=11 /product="GTP1/OBG protein" /protein_id="YP_002460205.1" /db_xref="GI:219669770" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR006073" /db_xref="GeneID:7260774" /translation="MSIQWFPGHMAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLL QEMLGDKPKIIILNKVDLADPYWTEIWTRKLRQSNPVLAVSATSGAGVGKIVPEVERL MAHKIEKWTAKGIRARSIRVMIVGIPNCGKSSLVNNLIGSAKAKTGNKPGVTRGNQWI RIHERVELLDTPGLLWPKFEDPEVGKKLGAVGAIRDEVLNLEELSLWVLEQLKENYPE ALTRYTEDVQNLDLEGIGRKRGCLVKGGQVDILKAAQIFLREFRAGSLGKFTLDHTVK" gene complement(3990777..3991289) /locus_tag="Dhaf_3754" /db_xref="GeneID:7260775" CDS complement(3990777..3991289) /locus_tag="Dhaf_3754" /EC_number="3.4.21.89" /inference="protein motif:TFAM:TIGR02227" /note="KEGG: mta:Moth_0972 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="YP_002460206.1" /db_xref="GI:219669771" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR011056" /db_xref="GeneID:7260775" /translation="MKHKTRIGWLIWVLAAVVVCAALLRLFVLQPYTISSNSMEPTLV PGDRILVNRFAYQYGTPTRGDIVVFAYPKDTSRTFVKRVIAVDGETVELKGNQVYVNG SLIQEPYLKQGDYSPFEPETIPAENIFVLGDNRRESGDSREWGVLPRSYIIGKAWFVY SPFQRIKFFW" sig_peptide complement(3990777..3990842) /locus_tag="Dhaf_3754" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.931 at residue 22" gene complement(3991726..3992067) /gene="rplS" /locus_tag="Dhaf_3755" /db_xref="GeneID:7260776" CDS complement(3991726..3992067) /gene="rplS" /locus_tag="Dhaf_3755" /inference="protein motif:PFAM:PF01245" /note="this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L19" /protein_id="YP_002460207.1" /db_xref="GI:219669772" /db_xref="InterPro:IPR001857" /db_xref="GeneID:7260776" /translation="MDFIRMIEEEQMKKDLPAFRPGDTVRVHVKVVEGTRERIQAFEG VVIKMKGGGLRRTFTVRRVTYGVGVERTFPLHSPRIDRIEVIRRGIVRRAKLYYLREL SGKAARIRDRR" gene complement(3992276..3992833) /locus_tag="Dhaf_3756" /db_xref="GeneID:7260777" CDS complement(3992276..3992833) /locus_tag="Dhaf_3756" /inference="similar to AA sequence:KEGG:CHY_1429" /note="KEGG: chy:CHY_1429 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460208.1" /db_xref="GI:219669773" /db_xref="GeneID:7260777" /translation="MGDLYVALLHAPVYNKNMETIATSITNLDIHDIARSTTTYGVKR YYIVHPAEAQRALAQRIMGYWQEGFGAEYNPNRQEAFARVKLASELAEVEEEIFKEQG RRPLKIATDARRYPHTLGYAAVRDKIENGEEPLLLLFGTGWGLLREVMEECDIILEPI YGPGEWNHLSVRSAAAIILDRLRGH" gene complement(3992846..3993637) /gene="trmD" /locus_tag="Dhaf_3757" /db_xref="GeneID:7260778" CDS complement(3992846..3993637) /gene="trmD" /locus_tag="Dhaf_3757" /EC_number="2.1.1.31" /inference="protein motif:TFAM:TIGR00088" /note="methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(1)-)-methyltransferase" /protein_id="YP_002460209.1" /db_xref="GI:219669774" /db_xref="InterPro:IPR002649" /db_xref="InterPro:IPR016009" /db_xref="GeneID:7260778" /translation="MMKFTVLTLFPEMFAPVHESILKRAQAAQLIEVSLINFRDYAAS KHKNVDDVPYGGGAGMVLKPEPLFAALRDLPPSPGRRRIVLLSPQGEVFQQRKAEEWS RWDELVFICGHYEGFDERTRSLADEEVSLGDFVLTGGELAAMVMMDAVARLLPGVLGE KASAEEDSHSGGLLEYPHYTRPPVFEGMEVPDVLLSGHHRRIEEWRRKESLRRTFLKR PDLFAKVEFQASDFNLLEELIQEHPELAQERSRWEHLRPKPKKRR" gene complement(3993634..3994146) /locus_tag="Dhaf_3758" /db_xref="GeneID:7260779" CDS complement(3993634..3994146) /locus_tag="Dhaf_3758" /inference="protein motif:TFAM:TIGR02273" /note="TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: mta:Moth_0969 16S rRNA processing protein RimM" /codon_start=1 /transl_table=11 /product="16S rRNA processing protein RimM" /protein_id="YP_002460210.1" /db_xref="GI:219669775" /db_xref="InterPro:IPR002676" /db_xref="InterPro:IPR007903" /db_xref="InterPro:IPR011961" /db_xref="GeneID:7260779" /translation="MDEVLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQE QRRLKVLHANVHQSEVYLTLEGINTRDEAEAIRGWAVKADRDQVPPLKEGWYYFELEG MQVYEGDVLLGTLAQVIQTGANDVYLVKGDQGEICVPALKTVVKHVDVAGKRMDVELP PGLIDGEELR" gene complement(3994926..3995156) /locus_tag="Dhaf_3759" /db_xref="GeneID:7260780" CDS complement(3994926..3995156) /locus_tag="Dhaf_3759" /inference="similar to AA sequence:KEGG:HM1_2184" /note="KEGG: hmo:HM1_2184 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460211.1" /db_xref="GI:219669776" /db_xref="InterPro:IPR004088" /db_xref="GeneID:7260780" /translation="MKELVEVLAKALVDHPEQVLVAQSETEKSVHLQLTVAPEDMGKV IGKQGRIANAIRTLVKAAAVKDGRRVHVDIDQ" gene complement(3995179..3995445) /gene="rpsP" /locus_tag="Dhaf_3760" /db_xref="GeneID:7260781" CDS complement(3995179..3995445) /gene="rpsP" /locus_tag="Dhaf_3760" /inference="protein motif:PFAM:PF00886" /note="binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S16" /protein_id="YP_002460212.1" /db_xref="GI:219669777" /db_xref="InterPro:IPR000307" /db_xref="GeneID:7260781" /translation="MATKIRLRRMGAKKNPFYRLIVADSNAPRDGRFIEEIGFYDPTK QPEVLNIDEEKAMKWLATGAQPSDTAKSLLRKAGVLAKYHESKK" gene complement(3995505..3996866) /locus_tag="Dhaf_3761" /db_xref="GeneID:7260782" CDS complement(3995505..3996866) /locus_tag="Dhaf_3761" /inference="protein motif:TFAM:TIGR00959" /note="KEGG: hmo:HM1_2182 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="signal recognition particle protein" /protein_id="YP_002460213.1" /db_xref="GI:219669778" /db_xref="InterPro:IPR000897" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004125" /db_xref="InterPro:IPR004780" /db_xref="InterPro:IPR013822" /db_xref="GeneID:7260782" /translation="MFQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVN FKVVKDFVAKVKERSIGQEVLESLSPGQQVIKIVNEEMVALMGGVSSKINISSKPPTV IMLVGLQGAGKTTHGAKLANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVPVFS LGQENPVKIAAASLQHANSQGLDVVIIDTAGRLHINEELMGELREIKTAVKPHEILLV VDAMTGQDAVNVAESFHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEK MDAIEPFFPERMASRILGMGDVLTLIEKAQEAFDEKQAREMEQKLRKQEFTLDDFLDQ MQQLKKMGPLNSLLEMIPGVGKQMKDVQVDEKDMAHVEAIIHSMTAEERRKPALIKDS RKRRIAKGSGTSVQEVGRLLKQFEQMQKMMKQFAGGSGMGMMGKGKKGKKGKKLGLPF PFK" gene complement(3996893..3997261) /locus_tag="Dhaf_3762" /db_xref="GeneID:7260783" CDS complement(3996893..3997261) /locus_tag="Dhaf_3762" /inference="protein motif:PFAM:PF04297" /note="PFAM: putative helix-turn-helix protein YlxM/p13 family protein; KEGG: hmo:HM1_2181 putative helix-turn-helix protein, ylxm / p13 like protein" /codon_start=1 /transl_table=11 /product="putative helix-turn-helix protein YlxM/p13 family protein" /protein_id="YP_002460214.1" /db_xref="GI:219669779" /db_xref="InterPro:IPR007394" /db_xref="GeneID:7260783" /translation="MERFAKMALLADFYGPLLTPKQGRIWDLHYEQDFSLVEIADLEK ISRQAVYDLLKRTEKILQGYEDKLGLIRRFADEQHKLSEVHQLVQEFEQKDFSNEKAW ERHQSISQKIDEIYRDIEAS" gene complement(3997444..3998739) /locus_tag="Dhaf_3763" /db_xref="GeneID:7260784" CDS complement(3997444..3998739) /locus_tag="Dhaf_3763" /inference="protein motif:PFAM:PF01979" /note="PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pth:PTH_1728 cytosine deaminase and related metal-dependent hydrolases" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_002460215.1" /db_xref="GI:219669780" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:7260784" /translation="MSKILIRAMVLPMTGPEDFYPEGEIGIENDRILFVGEKGSAPDS FIPDQIIDLPEDVVMPGLINTHTHAAMTMLRSYADDLPLMPWLQTKIWPFEDKMSDED IYWGTLLALGEMIQSGTTTMLDMYASMDQVAKAVLEAGTRGVLSRGLIGNAPNGERAF AENMDLVKNYHGAGQGRIQVMFGPHAPYTCSGEFLQRVKQEADRLGVGIHIHVAETED EIKTIKEQYGKTPVQWLEELGLFGGHVVAAHCVHLTEEDQEIMAQNKVFIAHNPESNM KLNSGTAPIPELRSRGVVVGLGTDGTSSNNNLDMFGEMRSAAFQQKLVKGATALPAYE VLQMATVDGARTLGLHDVGVLAPGYKADLISINFDQPHFYPRFSIPAHLVYVAHAGDV RTVMVDGKILMQERQLMTIDIKRVCREVEKRAKGIAQGL" gene complement(3998800..3999438) /locus_tag="Dhaf_3764" /db_xref="GeneID:7260785" CDS complement(3998800..3999438) /locus_tag="Dhaf_3764" /inference="protein motif:PFAM:PF00596" /note="PFAM: class II aldolase/adducin family protein; KEGG: drm:Dred_2062 class II aldolase/adducin family protein" /codon_start=1 /transl_table=11 /product="class II aldolase/adducin family protein" /protein_id="YP_002460216.1" /db_xref="GI:219669781" /db_xref="InterPro:IPR001303" /db_xref="GeneID:7260785" /translation="MLKEKILEIGQKIAQSGMVAGTWGNISAWDSDRNGYWITPSGMD YFSLKEEDLVLLSMDNTVLEGKRKPSSELLLHGQIYKQRPDVKGIVHTHSPFATAHAV SRLPLPGIVEDLVMIAGGQVAVARYELPGTLELALSAVQALEDKNAVFLANHGLVGVG FSLAEAFKVCQVVEKSAQIHIMSRLLGKPAALSPEDIQIMRRAYQESYGQRA" gene complement(3999438..4000475) /locus_tag="Dhaf_3765" /db_xref="GeneID:7260786" CDS complement(3999438..4000475) /locus_tag="Dhaf_3765" /EC_number="5.3.1.23" /inference="protein motif:TFAM:TIGR00512" /note="KEGG: chy:CHY_1556 aIF-2BI family translation initiation factor; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related" /codon_start=1 /transl_table=11 /product="translation initiation factor, aIF-2BI family" /protein_id="YP_002460217.1" /db_xref="GI:219669782" /db_xref="InterPro:IPR000649" /db_xref="InterPro:IPR005251" /db_xref="InterPro:IPR011559" /db_xref="GeneID:7260786" /translation="MKALEWMGDSLKILDQTRLPVEIKYRMAATYEEVAEAIEKMEVR GAPAIGAAAAYGYALGAIGYSGELADLPAHMEKVQHRLAETRPTAVNLFWALRRMEDR LRDQHEAKELAEIRQALVAEAENIAEDDRRVNRLIGEHGNAIVTAEANILTHCNAGAL ATVEYGTALGVIRAAQQAGKKVHVYAGETRPFLQGARLTALELMNDHIPVTLIADNMA GFLMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKV PSGQDIPIEERNPKELREVFGVQVAPPEVPVYNPAFDVTPAKLITGIITEKGIVTSPY SVNLLKMMVRS" gene complement(4000491..4001267) /locus_tag="Dhaf_3766" /db_xref="GeneID:7260787" CDS complement(4000491..4001267) /locus_tag="Dhaf_3766" /inference="protein motif:PFAM:PF01048" /note="PFAM: purine or other phosphorylase family 1; KEGG: dau:Daud_0647 methylthioadenosine phosphorylase" /codon_start=1 /transl_table=11 /product="purine or other phosphorylase family 1" /protein_id="YP_002460218.1" /db_xref="GI:219669783" /db_xref="InterPro:IPR000845" /db_xref="GeneID:7260787" /translation="MIGGTGLETVALLDLRTESIATPYGKVTVEIGRFEAHDEPIVFM SRHGKGHTVPPHLVNYRANIWALKELGVRKIIATAAVGSLSSRLQLGDIVLLDQFLDF TKSRPQTFYEGGGQGVLHVDMTEPYCRSVQAVIREAGESIGVPLQGGAAYVCTEGPRF ETPAEIRMYQILGGECVGMTSVPEVVLARECGMCYATIAMVTNEAAGIADHPLTHQEV VESLQAAGNKAAGLIQETFRILRHEQDCRCQMANAEVGKF" gene complement(4001279..4002241) /locus_tag="Dhaf_3767" /db_xref="GeneID:7260788" CDS complement(4001279..4002241) /locus_tag="Dhaf_3767" /inference="protein motif:TFAM:TIGR00064" /note="KEGG: drm:Dred_2067 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="signal recognition particle-docking protein FtsY" /protein_id="YP_002460219.1" /db_xref="GI:219669784" /db_xref="InterPro:IPR000897" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004390" /db_xref="InterPro:IPR013822" /db_xref="GeneID:7260788" /translation="MYKEEVQLAGFFTKLKAGLTKTRDQFVTKVEEILTGRRKIDEEL YEELEEVLIRSDVGVNTSFELVEGLRKEVKKRKLQEAEELKVVLQELIAELLGEEESM NFAEHGPSIFLVVGVNGVGKTTTIGKLAHYFQEEGKKVILAAGDTFRAAAIDQLEVWG QRAGVEVIKQKEGADPAAVAYDALQAAKSRGADLVIMDTAGRLHNKVNLMEELRKVKR VIEREIPGAPHEVLLVLDATTGQNALQQAKLFQEVAGVTGIVLTKLDGTAKGGVVLGI QGEINIPVKWIGVGEGMEDLRPFIPQDFASALFDQTQDDEEEEI" gene complement(4002408..4003955) /locus_tag="Dhaf_3768" /db_xref="GeneID:7260789" CDS complement(4002408..4003955) /locus_tag="Dhaf_3768" /inference="protein motif:TFAM:TIGR01813" /note="TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: glo:Glov_0943 flavocytochrome c" /codon_start=1 /transl_table=11 /product="flavocytochrome c" /protein_id="YP_002460220.1" /db_xref="GI:219669785" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR010960" /db_xref="GeneID:7260789" /translation="MTQKAVDRRQFLKTMALAGVSIAGMGTLVGCSAGAANPAPQPAQ AGPEWKEETDVVVIGSGFAGLAAALEVLEAGSQVIILEKMPVSGGNSAINGGDMCCAN TKMQKAAGVEDSVELMVADMLKAGGNINHVDKATLVAEKSNEALEWCQNYLGMKFREK LNYHGGHSVLRAHQSEEASGSGYIKAMLAKLEGKGISVSNNRKFVRFMENDEKRIIGV EVLDGYKYGNESSGTPLLIKARKAVIIASGGFSQDIRMRTIHDPRITDKFSSTNHLGA TGEALREALKHEAMDVHMDWIQLGPWTSPDEKGFGYVPQFVERLVGFAPMIDVKTGKR FIMESGNRKVRADAIIALGEPGIHVADEYAVKLQILPQILEGAMGNGSIKKYDTLEEV AKAYNVPVEPFLAEIKRWNSFVLKGKDDDFNCMIMEGAKPTEQGPFYVTRMWPKVHHT MGGLMTNLQTQVINQDFEPIKGLYAAGEVTGGIHGAVRLGGVACTDCIVNGRISGQEA AKAEAWG" sig_peptide complement(4002408..4002515) /locus_tag="Dhaf_3768" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.640 at residue 36" gene complement(4003981..4004448) /locus_tag="Dhaf_3769" /db_xref="GeneID:7260790" CDS complement(4003981..4004448) /locus_tag="Dhaf_3769" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: glo:Glov_0887 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460221.1" /db_xref="GI:219669786" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7260790" /translation="MGTGKEGPSAQFKLAFLLGCLLFVFIAVMGCDGQQAASQTKPQG GAGEGGQAALVNTGEQADNTHSKMGLQCEQCHEQGVENPVKQEQCLSCHKGMAEVALL TKEKEPNPHGPHHYDTADCTTCHSIHAKSQMMCSTCHDFPWINELNEELWTKL" sig_peptide complement(4003981..4004073) /locus_tag="Dhaf_3769" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.612) with cleavage site probability 0.448 at residue 31" gene 4004696..4005910 /locus_tag="Dhaf_3770" /db_xref="GeneID:7260791" CDS 4004696..4005910 /locus_tag="Dhaf_3770" /inference="protein motif:COG:COG3835" /note="KEGG: mta:Moth_1380 CdaR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, CdaR" /protein_id="YP_002460222.1" /db_xref="GI:219669787" /db_xref="GeneID:7260791" /translation="MAHTDEVKVSLTHSVLEMNNLEHVLSYLRESTGRNVIISDYKGT IYNLGSDQEQLPQSFFSIILNWDEGSPYLWDEELLTLCYKVGTSEKDGFIFVEPAHSE ECHELIPSLEKASLAVKTYFNLAHSMEKLNNVYTNNFIADILLCNINIKELLKQNSFL LNYDLNNLYYVCIMLTDRILTEIEKQALLAYTRDWLKLNKLDIFCTVWDNKYLVHICP THYDVKILDVDSGWKKSLDNITRYHEDVRKKFNFKATFGIGNKYLIDKLHLSYQEALY AIHLSELTGNGNQVRHIYDLGVYSLIFSNSLDHLKSLYKKYLNALILHDKVNNSMLLD TLRCYFDANLNINETAERLFLHINTLRYRLKRVEELTNTSFQKAYDRTNLYIALKVYD VLGRLELIDPSQ" gene complement(4005998..4007395) /locus_tag="Dhaf_3771" /db_xref="GeneID:7260792" CDS complement(4005998..4007395) /locus_tag="Dhaf_3771" /inference="protein motif:PFAM:PF07664" /note="PFAM: Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: ckl:CKL_0948 FeoB1" /codon_start=1 /transl_table=11 /product="Ferrous iron transport B domain protein" /protein_id="YP_002460223.1" /db_xref="GI:219669788" /db_xref="InterPro:IPR011619" /db_xref="InterPro:IPR011640" /db_xref="InterPro:IPR011642" /db_xref="GeneID:7260792" /translation="MSSITPDPLLKLYRDTETIREDFGHSITDRVVIDIFAYSEKLAN RVVCREQEQARRWREGIDKIVISRAFGYPIMLGILGLIFWITIVGANVPSQLLATALF AFQDTLTQGFNALGAPAWLHGVLVLGMYRTLAWVVAVMLPPMAIFFPLFTLLEDLGYL PRVAFNLDHMFKKAKACGKQCLTMCMGFGCNAAGVVSTRIIDSPRERLIAILTNNFVP CNGRFPTLIAIASIFIAGMAAFSQSLLAAGSVILMVLFGILVTFGVSWGLSMTLLKGE PSSMVLELPPYRRPKVRSVLYRSMLDRTLFVLRRAVIVAAPAGAATWVLANVWVGEAS ILTHIAAFLDPAAKVIGLDGFILMAFILGIPANEIVIPVLLMSYLATGQLTDFSTLAE LKEVLLANGWTWLTALNTMLFSLLHWPCATTLLSMYKETGSKKWTALGFLLPTTIAFI VCFMIAQTVYALGWV" gene complement(4007392..4008207) /locus_tag="Dhaf_3772" /db_xref="GeneID:7260793" CDS complement(4007392..4008207) /locus_tag="Dhaf_3772" /inference="protein motif:PFAM:PF01926" /note="PFAM: GTP-binding protein HSR1-related; KEGG: cth:Cthe_1404 GTP-binding protein, HSR1-related" /codon_start=1 /transl_table=11 /product="GTP-binding protein HSR1-related" /protein_id="YP_002460224.1" /db_xref="GI:219669789" /db_xref="InterPro:IPR002917" /db_xref="GeneID:7260793" /translation="MNLKIGDQTAPLMPKGRIRRESFGISSAADQWIIALAGNPNVGK STVFNALTGLRQHTGNWPGKTVNNAQGYFTYHNQSFMLVDLPGTYSLLAHSVEEEIAR DFICFGQPDATVVVLDATSLERNLNLALQIMEITPRIIVCVNLMDEARKRGIVIDFEA LQKELGVPVVATAARHNQGLEELQRAIFDIAVGNQATQPKQIVYSEDVERAIQLLQPQ IEKVGMSTILSPRWLALRLLDSDPAFIEEIGRFVAMNGEQEIDLQREEGKVAL" gene complement(4008264..4008512) /locus_tag="Dhaf_3773" /db_xref="GeneID:7260794" CDS complement(4008264..4008512) /locus_tag="Dhaf_3773" /inference="protein motif:PFAM:PF04023" /note="PFAM: FeoA family protein; KEGG: cbt:CLH_1793 hypothetical protein" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_002460225.1" /db_xref="GI:219669790" /db_xref="InterPro:IPR007167" /db_xref="GeneID:7260794" /translation="MDTQLLVPLSTLKQGEKAYVVDLELNGLLRRRVLDLGIVPGTSL QCVGTAPAGDPIAYLVRGTVIALRSEDARSIRVNSALV" gene complement(4008748..4010472) /locus_tag="Dhaf_3774" /db_xref="GeneID:7260795" CDS complement(4008748..4010472) /locus_tag="Dhaf_3774" /inference="protein motif:PFAM:PF00015" /note="PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: gka:GK1311 methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002460226.1" /db_xref="GI:219669791" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:7260795" /translation="MKAIANLKVSTKLVMSFCLLALITFAVGGLGVFNTLRLQEMDQE LYTYQTLPLLELRVIHGSFEENRAYIRDIILEEDPAQIETHLKAIEQNRQIIDQALAT FEQSLRTEEETLQFTYLDNVLENFDYHLDQVMELCRHGNKTFAYTVLAQDGPKLSANF SAAIDNLSLIKEQTGHEVAAANKARAESAFWQTIIFVLAAGVLAVVLGVTISRLISTP LSALAKAANEIASGNLVSQFPAKYRTAKDEIGQLGMVFQTMTENIRNLIHQVHESAGM VAASSEELSAGAGHAAEAGSQVAHAVSATADGAQVQVTALSETMATVENMAKVIEQIA ANSTSATLIAEKAAQAAVQGSSKIDTVVVKMADIKQSVEHSALVVSELGTRSKEIDQI VSTISGLAAQTNLLALNAAIEAARAGEEGRGFSVVAEEVRKLAEQSQQAAKQIAVLIQ SIQLDTQRAMTAMTEGTSEVQAGYAAVNEAGGVFADIAALVRTASDQIMEISAGVEGM SMDSHSMVNSVSKVEEISRQTSDQTQVVSAATQEQSSALTEIASSSGALAQLADQLQQ AVSRFKIT" sig_peptide complement(4008748..4008834) /locus_tag="Dhaf_3774" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.475 at residue 29" gene complement(4010469..4010984) /locus_tag="Dhaf_3775" /db_xref="GeneID:7260796" CDS complement(4010469..4010984) /locus_tag="Dhaf_3775" /inference="protein motif:PFAM:PF04205" /note="PFAM: FMN-binding domain protein; KEGG: lin:lin2786 hypothetical protein" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002460227.1" /db_xref="GI:219669792" /db_xref="InterPro:IPR007329" /db_xref="GeneID:7260796" /translation="MKKRLLIMVLWMITAGTLLACSPQTENAQFVEESKTRLIPGTYR AEFDQPDSRGWTPFLVMEINDEGKIAEVNFDYISTEGTFKTQDADYNQRMTAANGLGP KTYCPRFAKNLIIYQDPAQVDGITGATSSSQEFKQLAQAAYAAAEKGSQGTVYLSHIP EGDQGSGEGDS" sig_peptide complement(4010469..4010531) /locus_tag="Dhaf_3775" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.980 at residue 21" gene complement(4011166..4011579) /locus_tag="Dhaf_3776" /db_xref="GeneID:7260797" CDS complement(4011166..4011579) /locus_tag="Dhaf_3776" /inference="protein motif:PFAM:PF01325" /note="PFAM: iron dependent repressor; KEGG: drm:Dred_2721 iron dependent repressor" /codon_start=1 /transl_table=11 /product="iron dependent repressor" /protein_id="YP_002460228.1" /db_xref="GI:219669793" /db_xref="InterPro:IPR001367" /db_xref="GeneID:7260797" /translation="MLSPSLEDYLEEIYRFSMENSVVRVTDISKKLGVSLPSVSKALH KLNNQGYINYHRYGEIVLTEQGCLKGNYLVERNQMLQEFLALIQSQCDIPAETEAIEH YISDSTIQSLRRLVTFFKENPACYEAFLRFEYEQN" gene complement(4011951..4012883) /locus_tag="Dhaf_3777" /db_xref="GeneID:7260798" CDS complement(4011951..4012883) /locus_tag="Dhaf_3777" /inference="protein motif:PFAM:PF10588" /note="PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: pth:PTH_2647 hypothetical protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin, iron-sulphur binding, conserved site" /protein_id="YP_002460229.1" /db_xref="GI:219669794" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006963" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260798" /translation="MEWLTLSIDGREVSVPKGTTVLEACRMHDITIPTLCHDPELTPA GACRLCVVQIEGMRNLPPSCVTQATQGMVVHTQNEKVRKARKTILELLVANHPLDCMT CQKMGDCSLAEYAYEYGVKGEIYRGERRRLPIEDSNPYILRDLNKCILCGKCVATCEA VAERSVIGFVNRGFHAKVATFMDTDLKDSTCVYCNRCVAVCPVGALIDKNTLGKGRAW EVRKEEVICTFCEAGCKFEINSKDGKVIAVTAKSASSGRPLCLKGRVGSDFRYNPERK EKPFVNKDGEFVQITWAEFLGLGDIAEKLALLAE" gene 4013101..4013661 /locus_tag="Dhaf_3778" /db_xref="GeneID:7260799" CDS 4013101..4013661 /locus_tag="Dhaf_3778" /inference="protein motif:PFAM:PF01066" /note="PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ckl:CKL_2305 hypothetical protein" /codon_start=1 /transl_table=11 /product="CDP-alcohol phosphatidyltransferase" /protein_id="YP_002460230.1" /db_xref="GI:219669795" /db_xref="InterPro:IPR000462" /db_xref="GeneID:7260799" /translation="MNSSDERMLKSIPNWLSLSRIFLSLALLFLEPLSLSFYAMYIAC GLSDMLDGFIARKTGTTSTLGAKIDSLADLVMAVVLLVILWPILNPGAVILLWVIFIG VIRLAAMMVARIKYNSLASLHTYGNKATGLLLFLFPLLLSFSHAAVLMYIICVLASIS AIEELLIHLTSDELLLNRKGWFEGKK" gene 4013849..4014052 /locus_tag="Dhaf_3779" /db_xref="GeneID:7260800" CDS 4013849..4014052 /locus_tag="Dhaf_3779" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460231.1" /db_xref="GI:219669796" /db_xref="GeneID:7260800" /translation="MDNKEERLSNEEDENMNGAVKDQGYRKTSLSSQKLKEISVRPVA IKDGKFLFDRKNKDHRYIVNEGE" gene 4014063..4014437 /locus_tag="Dhaf_3780" /db_xref="GeneID:7260801" CDS 4014063..4014437 /locus_tag="Dhaf_3780" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: amt:Amet_2124 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460232.1" /db_xref="GI:219669797" /db_xref="GeneID:7260801" /translation="MHWFSLGDVFYFDVGFDDVPEESKRRPAIIMMQEGEDLFILVST TSIPPNDPPKYFDQFKIPILNWRRSGFLKPSWGLGFKLIHVTRQELMGSVKKEDILGK IHVTDFDMLLNEIEYIHRNSSR" gene 4014648..4015088 /locus_tag="Dhaf_3781" /db_xref="GeneID:7260802" CDS 4014648..4015088 /locus_tag="Dhaf_3781" /inference="protein motif:TFAM:TIGR01909" /note="TIGRFAM: C_GCAxxG_C_C family protein; KEGG: drm:Dred_2420 C_GCAxxG_C_C family protein" /codon_start=1 /transl_table=11 /product="C_GCAxxG_C_C family protein" /protein_id="YP_002460233.1" /db_xref="GI:219669798" /db_xref="InterPro:IPR010181" /db_xref="GeneID:7260802" /translation="MEDLALEARNRTGDNFKQGFNCAESIFKAFNEMCNSPMSPEVLK LATGFGGGLGHAGCMCGALAGSTMVLGILKGRTRTEESREPSYELTKEFHDLFESKFG TTCCRALNPYPFDTPEHLRNCLKITGGTGKLLMEFLQEKNLLTD" gene complement(4015254..4017401) /locus_tag="Dhaf_3782" /db_xref="GeneID:7260803" CDS complement(4015254..4017401) /locus_tag="Dhaf_3782" /inference="protein motif:PFAM:PF04205" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; Protein kinase ATP binding, conserved site; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="FMN-binding domain protein" /protein_id="YP_002460234.1" /db_xref="GI:219669799" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR007329" /db_xref="InterPro:IPR017441" /db_xref="GeneID:7260803" /translation="MSKQFSRRDFLKGAAAAGAGAMTMGLTACSPAAAGNSPSGAGTA DNMVLSDQTYRNLKWKFEVMPEEYPIPEEKITKTVTHDIIIIGSGMSGLCTAVSTKES GADVRVISAGKRPISRGGSNHAIGSKKQKELGIDYTPDTASGRHAAKVEKHSAACYID ERKWSTWINNSGPAMDWMIDKMASKGLKVCLEPGYVDPDGILTVPAASHSFYNEEVPF GMLFGAPLCAQAYADIFKDMGGEIDFQTRALYLIRDDNNTGRVSAVVAQNLETGEYIK YSANRAVVLATGDFSKDPDMMAKYSPWAWNLYRNSIDTTKVDYDVALAFNGLYPGDGH KMGLWIGAGWQKTYPNAPMINCGAPGPKVNSIDNFWGINLTSDGKRYHNEVTNFSYGA IAILQLPDHIAYSVWDSRYAYIQDIWETFGCSVNNENGILGATPEQMIAGWEADVEAG TCWKANTIEELVDKMGFKGEARANAIESINNYTKYAEQGRDEEYHVNPSVLHPIKTQP FYAARTHFGKDAMTFLCVTGGLRTNEYMQVCEDDDTPIDGLFNTGIMVGDYYAGTYNF VMPGQNLGGVCNCLSYILGRRLADQNFKFRSGKIQRVSTPEDESAQNDGSSMASLGGG DASYNDGVYTGTGSGGMGGDVKVEVTIENGKLASLTYTDNETPEIGGKALPTLVEQAV SANAATVDSVSGATMTSTAFKAALADALTKAAK" sig_peptide complement(4015254..4015358) /locus_tag="Dhaf_3782" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.962 at residue 35" gene complement(4017568..4018437) /locus_tag="Dhaf_3783" /db_xref="GeneID:7260804" CDS complement(4017568..4018437) /locus_tag="Dhaf_3783" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; KEGG: tex:Teth514_0147 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_002460235.1" /db_xref="GI:219669800" /db_xref="InterPro:IPR000847" /db_xref="GeneID:7260804" /translation="MDIQQLRYFVAVAQYGKVKDAADAMFISRQAVSKALAQLENELG QLLFQRTHNGIMLNERGQRFVDRAEVLVREFDVLNADMRKDEQVCRVRICFPFTTYHY FWNVLEPFLVKNEDRLRVDVINCLDAQCHMMFENSLVDMAVSFLRFGPGTDDQLVATS PILFAVNEKNPLAGKVSLALGDLAHVPLIYYMNGYEDSFWLDKNCRKGDYEVNDILLA FDLVRQNKGIFAVPELAVLQPMQGIVFLPYHGPSDYDNFYCAVTEQAVRDKRRRQACF NLREALLQAGSEK" gene complement(4018668..4020173) /locus_tag="Dhaf_3784" /db_xref="GeneID:7260805" CDS complement(4018668..4020173) /locus_tag="Dhaf_3784" /inference="protein motif:PFAM:PF00015" /note="PFAM: chemotaxis sensory transducer; KEGG: cth:Cthe_0266 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_002460236.1" /db_xref="GI:219669801" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="InterPro:IPR010916" /db_xref="GeneID:7260805" /translation="MENSSILKSNVKRVNRFNVILIWIISTLLSGQSFLTMGAVYGVN VLACTFGAALVATLALLFNLKFNRHESITALIISFSIVVSASYLGHMTHGATTATIFI VYLGSLAMIAMYFRVRLLLTYAVLLNLFLSVFYFIDPQGLLGPNYSVLEFARRAAVMD LIVIIFFFLTKWGNEYIMASYAKEQDARELLQKLTEAMGRIDQDTSVLNDSISESYTY VQDIEQMSKQTTIAVEEIAKGVGENSVSTGKIVDQTNEAVAIIEETRKLSTETTKEAQ MMKDIVVKNAYGIKQMVEQMSTIDTAIGATLVNVSELQKHMTQINNALANITTIAAQT NLLALNAAIEAARAGEAGKGFSVVANEVSKLAEMSAATVKEIFEIIELVQMTTATSLA KATHGKHAVDAGTEVIAQIQERFEHLEESAESIAASVKEEDAMISDLAAAFAEIKGQL ENISTVSEQQSASTEEILASIENQNSKISEVTHAMTSISELSHNLRSILNA" sig_peptide complement(4018668..4018784) /locus_tag="Dhaf_3784" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.904) with cleavage site probability 0.500 at residue 39" gene complement(4020211..4021005) /locus_tag="Dhaf_3785" /db_xref="GeneID:7260806" CDS complement(4020211..4021005) /locus_tag="Dhaf_3785" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: tde:TDE1263 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460237.1" /db_xref="GI:219669802" /db_xref="GeneID:7260806" /translation="MPACLTHYQFGQEILDRLDPELKSCALAYQGEFDVGLQGPDIFF FYKPYRKTRIAAYGNACHDQPAIEMFRTILKKVHHKGPLAYMMGLICHYILDANCHPY VYKHSSDMSEHHLMEAAYDRHILTRSGRDQARHLTIPSSGLDFQAMAELWPGMSTATI KKCVTSQRNYIWLLDQPRILSVCQAVAGSRGKFTAMSLPDELSWIQEKYARNLDVLYS KALEEGPEKIRQAWAQMGTRNMDSSGFELNYKGEAVFEGAEKREND" gene complement(4021037..4022275) /locus_tag="Dhaf_3786" /db_xref="GeneID:7260807" CDS complement(4021037..4022275) /locus_tag="Dhaf_3786" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: bad:BAD_0202 hypothetical protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002460238.1" /db_xref="GI:219669803" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7260807" /translation="MSKLERNWILYDVGNSAFVLLTSTIIPIYFKNLAAADGISNAAS TAYWGYASSISTMIIAILGPILGTVGDLRGYKKALFLIFMAIGAAGCLALALPVGWLA FLGLYIIGKSGFSGSLIFYDAMLPDITSEERVDRVSSHGYAWGYIGSCIPFVICLGLI LTADGTGLGAAAATQLAFLITALWWILCTVPLMGSYRQVYALESGGRPVRESLSRLWH TLTHVQKHKSVFTFLIAFFLYIDGVYTIIAMATSYGKDVGISDHNLLLALLLTQVVAF PFAILFARLTKKFEATKLISAAIIGYLAITLFAFQLDKAWEFWLLAVCVAVFQGGIQA LSRSYFARIVPKEKANEFFGIFDIFGKGAAFFGMLLMSVITQITGHSRFGVLGLAVLF GVGLWALRHHVCESKKAQAF" gene complement(4022528..4024381) /locus_tag="Dhaf_3787" /db_xref="GeneID:7260808" CDS complement(4022528..4024381) /locus_tag="Dhaf_3787" /inference="protein motif:PFAM:PF05569" /note="PFAM: peptidase M56 BlaR1; KEGG: cth:Cthe_1810 peptidase M56, BlaR1" /codon_start=1 /transl_table=11 /product="peptidase M56 BlaR1" /protein_id="YP_002460239.1" /db_xref="GI:219669804" /db_xref="InterPro:IPR008756" /db_xref="GeneID:7260808" /translation="MEAVFKIVLTTSFYAGIVGMVILLVKNLLQDKLNPRWHYWLWIV LLVKLIIPFGPESAFSLYNILEPLSQEIKFSSVPETVGDAGIYSPEGTQAGNERPGLP AQEPVASAQNLRTYVADALPIIWLSGLLLMFVWLVYAGFSFAGKLKTHAQPASPAVQA LLEECKTRAEVKGEIAVFIQDIVKVPSLVGMFKPRILLTPDTLRLKEQDISYILLHEL SHYRRKDLWVNYLLLILQIIHWFNPVIWYCFRRIRQDMEVAADEGVLSLLKVSEHKEY GKALLAVLETINTKTRLMPRLIGMVDERKNIERRIRMIKMADFFKSRRKRVILTGILC VVILGGLLWTSASARVTSDEGGEDTDAISQNSAAQPVTGQSIEEAVSLAVKEKGKGYL EGEALTEGHKILEVEEKDGTVIAYTVASIGWFGFENGIFTGVSGSGAIPTVMTFAKNA NGEYSLLEYKEAEDGGGYGDSIKRNFPQRLWDSIFSGEHYPELVVQKEAQARQYLQSI GRDAQVSQGYVEKKLVDINVEASNRLFAELTKGDAELNRFPYWIGTKEYLDQGERFIY ETSQGKTSDGYDLVTFRKSKEDGRIEREYQYKIVGNELTLVFLQSTPELKP" gene complement(4024384..4024758) /locus_tag="Dhaf_3788" /db_xref="GeneID:7260809" CDS complement(4024384..4024758) /locus_tag="Dhaf_3788" /inference="protein motif:PFAM:PF03965" /note="PFAM: Penicillinase repressor; KEGG: cth:Cthe_1811 CopY family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="YP_002460240.1" /db_xref="GI:219669805" /db_xref="InterPro:IPR005650" /db_xref="GeneID:7260809" /translation="MKTIPQISEAELEVMKILWELKSCTSAQIIERLAEVSDWKPKTI HTLITRLVSKEAVSAVKIDGKSYLYSPGVSEEEYKRYANQSFLHKLYNGSLNLMLASF IKEQHLSKSEIEELKKMLDEEM" gene 4025011..4025856 /locus_tag="Dhaf_3789" /db_xref="GeneID:7260810" CDS 4025011..4025856 /locus_tag="Dhaf_3789" /inference="similar to AA sequence:KEGG:Bsph_3778" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460241.1" /db_xref="GI:219669806" /db_xref="GeneID:7260810" /translation="MNDLVKERTPQIIAAEINNYKESTGRIQLSCAVEIGRRLMEAKA LLPHGEWGKWLQEYVSYSQLTAERYMKVAREYGQTRGDSPGEEKAKSSTLKILSYSQA LTLLDVPEEERVEFIAELDIENMSVRQLQRAIKEREQARWEKEETEQENKELQKALEG EKAENSELKKERDDLKTKAGELEKEKQNLEQDVEKRKAENSKLKEKPLFKSNQKLRAD LTAAQIKNATHKVAFKFEALERAFKELTYELNLLLMIDKDVYGEYRKTLRKFLLKCLE EKVGN" gene 4026040..4026720 /locus_tag="Dhaf_3790" /db_xref="GeneID:7260811" CDS 4026040..4026720 /locus_tag="Dhaf_3790" /inference="protein motif:SMART:SM00419" /note="SMART: regulatory protein Crp; KEGG: chy:CHY_1835 carbon monoxide oxidation system transcription regulator CooA-1" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002460242.1" /db_xref="GI:219669807" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7260811" /translation="MPARMKLTDIDLIEALGSPEYSDLLSIFQERTFQKKQIISLPNH EENLVMLVKKGRVRVFLSYEDKEFTLSILEPGDIFSMHTRAFTQALDNDTVLLVAKTK KFGEMITRYPQFSLIMIKVLGDLLKNSITIINGLVFQEAHTRLAEFLINAAKDKGCQV AEGIQLELGLNVEDISTILGTSRQTVSFLLNDFYKNGLLLKVNRRTLIIKDMDMLKKM LDKNDQLK" gene 4026884..4027372 /locus_tag="Dhaf_3791" /db_xref="GeneID:7260812" CDS 4026884..4027372 /locus_tag="Dhaf_3791" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_1825 iron-sulfur cluster-binding protein CooF" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002460243.1" /db_xref="GI:219669808" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260812" /translation="MSKGKNRFIHADLSRCLSCKSCELACGLAHAGYEIEGAAAGQMK LKPRVSVVQQGTTVVLTQCRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCAR ACPFGSITMTTEMVERADGKKSNRTKALKCDLCFSRNKEIKAEGCACIQACPTKVLSL SL" gene 4027419..4029326 /locus_tag="Dhaf_3792" /db_xref="GeneID:7260813" CDS 4027419..4029326 /locus_tag="Dhaf_3792" /EC_number="1.2.99.2" /inference="protein motif:TFAM:TIGR01702" /note="KEGG: chy:CHY_1824 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase, catalytic subunit" /protein_id="YP_002460244.1" /db_xref="GI:219669809" /db_xref="InterPro:IPR004137" /db_xref="InterPro:IPR010047" /db_xref="GeneID:7260813" /translation="MSLRFSIDEAVQKLLPVAEKDKIQTVWDRHKDQQPQCGFGKMGI CCRICWKGPCRVDPFGKGAQRGICGADAHTIVARNLIRGIAAGAASHSDHGRHIALTM REVGKGNASAYTIKDEEKLKRIAQRLGIDWEGKSIRELTKEVADASLEDYSRQDSKIP CRWAELTMTQERAAKLKQWDVMPHNIDAAVAEIMSRTHVGCDADPVNILLGGVKGAVA DYTGMYLSTELSDALFGTPAPTVTEANLGVIKEDAINIAVHGHNPLLSEVVCDAAAML NDLAKQAGAPGGFNIVGVCCTGNEVMVRHGVPLATNYLSQEMPILTGALEAMVVDVQC IMPSLGAIAQCFHTQLITTMSTTKIPGATHVQFDKENAVESARKILELAVDAYQRRDP KRVNIPQVKEKAIVGFSAEAVIGALSQLDAHDPLQPLLDNIVNGNIQGICLFAGCNST NTLQDRSFVELAKGLAAHNVLLLATGCGAGALAKHGLMTQEATLAYAGDGLKAVLTAI GQANGLNGPLPLVLHMGSCVDNTRAVSVAVAIAQKLGVDLDRLPLVASAPEAMSEKAV AIGTWAVALGLPTHLGTVPQVLGSQVVTEVLTEKIKDITGGYFIVETDPEEAVKKLFA VIQEKRAGLNL" gene 4029352..4030137 /locus_tag="Dhaf_3793" /db_xref="GeneID:7260814" CDS 4029352..4030137 /locus_tag="Dhaf_3793" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gbm:Gbem_0074 cobyrinic acid ac-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_002460245.1" /db_xref="GI:219669810" /db_xref="InterPro:IPR002586" /db_xref="GeneID:7260814" /translation="MKIAVTGKGGVGKTTLSGTLARLLAADGYRVLAVDADPDANLAS ALGIPEENYRGITPFAKMKALAEERTGADGGYGTFFILNPKVDDLPEQFCVEHEGVKL LLMGTVEQGGSGCVCPEHTLIKRLMQHLLVQRDEVVIMDMEAGIEHLGRGTAGAMDAL IVVVEPGRRSVQTARQIQELARDLGIQRVFVVASKVRSAEDLEFVGEALSDFPLLGQV TFSREIMDADLEGKALFDLGGEPVAEIRKIKENLIQLISSMDE" gene complement(4030201..4030935) /locus_tag="Dhaf_3794" /db_xref="GeneID:7260815" CDS complement(4030201..4030935) /locus_tag="Dhaf_3794" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2651 amino acid ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460246.1" /db_xref="GI:219669811" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260815" /translation="MKLKISNLEKAFAGKTVLKDINIDLEYFRSLAIIGPSGGGKSTL LRMIAGLQRPDRGEIHINGERIHYSETLLHEYRKTIGVVFQSYNLFPHLTALDNITLP LTVVHKFSKEKAEIIALDLLDRFQLKVHMDKKPHQLSGGQQQRIAVARALSIESRFLL FDEPTSALDPELTSEVLDMIKELQEQDKDLILVTHEMGFARQSCDYVLFIADGQIIEH GSSARIFKEPQSLELKNFLNKILEWR" gene complement(4030925..4031713) /locus_tag="Dhaf_3795" /db_xref="GeneID:7260816" CDS complement(4030925..4031713) /locus_tag="Dhaf_3795" /inference="protein motif:TFAM:TIGR01726" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU2650 amino acid ABC transporter, permease protein, putative" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_002460247.1" /db_xref="GI:219669812" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:7260816" /translation="MNRPNLLWKNEESHHPTRVQQAFNIALVSAFMLGVLLWAFYSLD YTLRLDTVYLYRTKFIDGFLMTIIIAFFSLILSLIIGSFLAFAGKSRFLPLHYFSKAY VEIIRGTPLLVQIYVFFYIIATAMHLSNRYVLGVIILSVFSGAYICEIIRAGIESIEA SQIETARSLGFTSYQRYRYIIIPQVFKRILPPLAGQLVSLIKDSSLLSVIAVSELTKN VQEVDSFTFATFENYIVLALLYMILTVPISYASKVLERKFNYEA" gene complement(4031901..4032746) /locus_tag="Dhaf_3796" /db_xref="GeneID:7260817" CDS complement(4031901..4032746) /locus_tag="Dhaf_3796" /inference="protein motif:PFAM:PF00497" /note="PFAM: extracellular solute-binding protein family 3; KEGG: gsu:GSU2649 amino acid ABC transporter, amino acid-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_002460248.1" /db_xref="GI:219669813" /db_xref="InterPro:IPR001638" /db_xref="GeneID:7260817" /translation="MKKNYLLLLTAALLISSILLGCSKSQAPANQPSQAGNDATAAQE LIVGMELAYPPFEMTDEKGNPTGVSVDFAKDLGAALGRPVKIENMAFSGLIPALQTKK IDMVISSMTITDERKKTVAFSDPYAKAWLALLINEKSSVKEVKDLNAPGRKVAVKNGT TGHIYAQANLPQAEIMVFEKESACILEVGQGKADAFIYDTLSIYRAWKQNEKTTRANL NPFQDKVEEWGVALRQDDKELTAKVNQFIGEYKKNGGFTRLAERYLPQEKKDFAALGV KFFFD" sig_peptide complement(4031901..4031966) /locus_tag="Dhaf_3796" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.863 at residue 22" gene 4033617..4034039 /locus_tag="Dhaf_3797" /db_xref="GeneID:7260818" CDS 4033617..4034039 /locus_tag="Dhaf_3797" /inference="similar to AA sequence:KEGG:Csac_2103" /note="KEGG: csc:Csac_2103 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460249.1" /db_xref="GI:219669814" /db_xref="GeneID:7260818" /translation="MTNHLIYPIVVEKADDEGLGMYFPDFPGTAILSLDITDGIRRAK EMLANLVIEKEEQALPLPIPSAPEDITLYDASDRIVFIEVYLPPYRNEAKNKSVTKNC TLPKWLRDAGEEAGLNFSQLLQTSIKDALGINESKMQP" gene complement(4034248..4035024) /locus_tag="Dhaf_3798" /db_xref="GeneID:7260819" CDS complement(4034248..4035024) /locus_tag="Dhaf_3798" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: fgenesh4_pg.C_scaffold_8901000002; . ; K09023 protein RutD" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_002460250.1" /db_xref="GI:219669815" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:7260819" /translation="MPYIKVQGKNIFFRQNDKAISHRPTILCVHGAGGTGKKWANQLS GLRDFHLIALDLPGHGLSEGEAVDSIQSYKESIWEFVQAMKLTSFVIAGHSMGGAIAL QFALDYPEWLKGLITVGSGGRLRVNPVMLKSLSRGEHPLESIRFSYSPKAAAKILEDA AEEMKAVSTQVLWADFQACDNFNVIDSIQQINLPTLVICGQEDRMTPVKYSEYLAQQI PQASLVLIPEAGHMAMIEQPEAVNKAITEFMMDSLNPAQR" repeat_region complement(4035228..4037254) /note="IS element" gene complement(4035376..4036623) /locus_tag="Dhaf_3799" /db_xref="GeneID:7260820" CDS complement(4035376..4036623) /locus_tag="Dhaf_3799" /inference="protein motif:PFAM:PF02371" /note="PFAM: transposase IS116/IS110/IS902 family protein; KEGG: fgenesh4_pg.C_scaffold_8901000001; . ; K07486 transposase" /codon_start=1 /transl_table=11 /product="transposase IS116/IS110/IS902 family protein" /protein_id="YP_002460251.1" /db_xref="GI:219669816" /db_xref="InterPro:IPR003346" /db_xref="GeneID:7260820" /translation="MSLFVGIDVSSSDFKVRILDERGNEPVKRLRALNDQPGCEQVAR YLFDACAQVNVDRLVIGLEATSVYSWPLQMFLAEDHSLAPLQPQIYSFNPKVVANFKK AYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNY FLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVAARPLDELIDFLMEKGKRH FEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEI RHFPNTLITIPGIGPVLSAGIIAEIGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDT PLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRM VDALLRSNQIYRPHGNRGNANQA" gene 4037262..4037948 /locus_tag="Dhaf_3800" /db_xref="GeneID:7260821" CDS 4037262..4037948 /locus_tag="Dhaf_3800" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bfs:BF2902 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460252.1" /db_xref="GI:219669817" /db_xref="GeneID:7260821" /translation="MNTKVMTAIPFTIDRDWLFTHLHIKPGKPYVEDVENMIEQALTI GKPKAAYRLAYIESKGEDFVVVDGFKFTSRVLRVNLAETFKVVPYVITCGEELERWAK TFHHMFESYCADGIMEAVMHSARVAFFSQIAEEYNLGHAVNMNPGSLEDWPLKEQAPL FQLLGDVKSLIGVELKESFLMSPIKTVSGFRFSKEGSYENCQLCPREKCPGRRAPYEQ NLYAEKYQLK" gene complement(4037968..4038618) /locus_tag="Dhaf_3801" /db_xref="GeneID:7260822" CDS complement(4037968..4038618) /locus_tag="Dhaf_3801" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460253.1" /db_xref="GI:219669818" /db_xref="GeneID:7260822" /translation="MEQLKKDIKKDIVVTVCILATIGLIILGRQFFAYVEFRMKFCIP LYSETDILLHDPNSNSMMLTNEEDIKELLDSMKSIKFAGIRPLTPTFADNSPYTISVR AKNGHYLLNVSDDSTQSYFRGEHDAKIVHYEETLRIVKRLFEGQSTDYREFEMSFLVR KRHCHDSVRWICLVPASPMASACLGHFIQRNHRSSRCSLWHHHGGIGRLPKNIKLL" gene complement(4038744..4039409) /locus_tag="Dhaf_3802" /db_xref="GeneID:7260823" CDS complement(4038744..4039409) /locus_tag="Dhaf_3802" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0384 ABC transporter related protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460254.1" /db_xref="GI:219669819" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7260823" /translation="MNIIELKEIYKIYGKSDYRTIALNNINLAIEKGDFLAIMGPSSS GKSTFLNILGCMDVPTSGEYYLNGVLINSQSDRALSNIRNHTVSFIFQNFALLKDYSL YENIELPLLHRKIPSKQKKEKIMHYSSKLGINSILRKKPQETSGGQQQRAAIARALVC ESEVILADEPTGALDQKTGENLLLLLKQINQEGKTILIVTHDSKTANYANKIITINDG EIV" gene complement(4039406..4040671) /locus_tag="Dhaf_3803" /db_xref="GeneID:7260824" CDS complement(4039406..4040671) /locus_tag="Dhaf_3803" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: bca:BCE_3084 ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002460255.1" /db_xref="GI:219669820" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7260824" /translation="MPSIKIALKSLGKRKLTTILFIVQFTITIYMLHTAVMGIKTNSY QEKYLNADIDKTMHLTLFNVTYAEYFRSSFLTLAEYINNLPGVEGFGGYDLTNTFFAE LENDNAFLTKRKELTKGSFKEQYPHAVEIIKMDQGVYQLAKLQIVQGRSFQDSDFNPN QKTIPILIGEAYSQIIKLDQMITDSNTGIQYKVIGFIGNDSRWFNEHDYIGNKLVSLS DKFVAPFSSSENSILEKSNSLFYTLSNTEEQENISMLIENKAKELNLGIACKSIREEL LLYKQNNREIMFSHLFICIFLGVMSLFGLITVSVSTVLARKREFGIRMVTGASKAYIR SLIIKENFIIIAISALLASLAILTMNYLAVKQAINDGEMINPMQDSSLETVLLSIIII MGITFLSSILPVHKVNSLKPVEMIGGNDR" gene complement(4040691..4041827) /locus_tag="Dhaf_3804" /db_xref="GeneID:7260825" CDS complement(4040691..4041827) /locus_tag="Dhaf_3804" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: cpr:CPR_1981 permease domain-containing protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF214" /protein_id="YP_002460256.1" /db_xref="GI:219669821" /db_xref="InterPro:IPR003838" /db_xref="GeneID:7260825" /translation="MYKIITLLKRQFIAHTVSIIFLLIGFIVSILLISIGTSAVLGLK QAAIMKENATPQNALAMTYAFSKKSSFDDHLEIIKNISVNSGVMVANHSLYFNEDQSK HPLTAIFFQEESKWTYPYYDGRYLKTSEINQGASVILIGKNLLGLTHKKDGIKYLDIE GEEYEVIGLIGVKNQYTTWDSRILMPLTSVPESTRSEIESSGCTMILYNDEKLPMDDF NTLKDKILQVDKDAMITAEELNPGSEKIIIDLFAQKDSLVIFTLLVYVIALINLVNIT SYWINDRRYEIGVRKAFGHTNLQVAMMLFSEMFLVLLTGCIIALVLHMLLNQILSNML DYPSTVTYVNWLTAIIFTMASSLAATIIPIVKSMKIQPIEIMRK" sig_peptide complement(4040691..4040810) /locus_tag="Dhaf_3804" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.920) with cleavage site probability 0.479 at residue 40" gene complement(4042025..4043062) /locus_tag="Dhaf_3805" /db_xref="GeneID:7260826" CDS complement(4042025..4043062) /locus_tag="Dhaf_3805" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460257.1" /db_xref="GI:219669822" /db_xref="GeneID:7260826" /translation="MDSADANKNKVRELFFFILCGLVLICSISFSVYVANLDEINNRI LVMIYGLIIKPIIGVSAALLIAGLLAKIGVLNTDVLSAKAKKILFFIGLVLVTITAFY MLLMGLLCMGYQYAGTDNWVSAVNRSQLYQTLYQPFRSVYYKAVYFFYNNVGTLGALF LFFAKNRLENGIRERPNKTNIKKGNVGQLLFYSVFGLAFICGVIFRIYIEKTAESTSH HILTGIIYLVWVKPLVLVSAALLIAGLLTKIGLLNVDHLSAKSKKIIFIMGLIFVSVT VFYMLLMGLFYTGLQYAETDNWVKAVINSQVFIMLTKPFFSLYDEKMFLIRNTVCTIG ALFLFVTINKS" sig_peptide complement(4042025..4042129) /locus_tag="Dhaf_3805" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.956) with cleavage site probability 0.936 at residue 35" gene complement(4043763..4044281) /locus_tag="Dhaf_3806" /db_xref="GeneID:7260827" CDS complement(4043763..4044281) /locus_tag="Dhaf_3806" /inference="protein motif:PFAM:PF04892" /note="PFAM: VanZ family protein; KEGG: bcz:BCZK2396 teicoplanin resistance protein" /codon_start=1 /transl_table=11 /product="VanZ family protein" /protein_id="YP_002460258.1" /db_xref="GI:219669823" /db_xref="InterPro:IPR006976" /db_xref="GeneID:7260827" /translation="MKKNIKIILLIYVIIIIRITLFPINPVIRIQLSFIDYNLIPFQF LKGGFDKIQYFLSPEHTYSINIIASTLIDMYKNFACNILLFCPLGFLLPMLYEINNRL KRIIVISFASSVSIEVLQLIIIITTITPGRAFDIDDIIANTIGGIIGFYFFVICNKFY KKKLLNRETLHP" gene complement(4044669..4045697) /locus_tag="Dhaf_3807" /db_xref="GeneID:7260828" CDS complement(4044669..4045697) /locus_tag="Dhaf_3807" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460259.1" /db_xref="GI:219669824" /db_xref="GeneID:7260828" /translation="MKTKKIIIFMTLIIGLLSIGYVCLAEGSVFFAKDSIIENNPGGI NKYTAEISDTIKLQDITVSASEEIADDGSLIFNVKNTSDNSILGSFWYKPWLENRPIY LKLSNGDIILGKEKIYSYKEKKVVPLTEGTGLETVFDYDVSGDNLAIVGKRSSNNAGI EVVIKNLTTGKAKSIDTFKYSGFNYPEVIYLGWSDGKLFYDYFENTPKIKEYSLQNDK SEVYFEGAGEAQVSPDGSKIVFTQINLKDRHDSKIVLSDLKNNQIIATLDGSRKLFWD NDYLIIKNVDQAKLVVYDIKNKGIKAGEYPIEEQPYEVNVTGDGIKVKSYSFKNETII DTEKEFNK" sig_peptide complement(4044669..4044743) /locus_tag="Dhaf_3807" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.607 at residue 25" gene complement(4045717..4046541) /locus_tag="Dhaf_3808" /db_xref="GeneID:7260829" CDS complement(4045717..4046541) /locus_tag="Dhaf_3808" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidase M23; KEGG: esi:Exig_1184 peptidase M23" /codon_start=1 /transl_table=11 /product="Peptidase M23" /protein_id="YP_002460260.1" /db_xref="GI:219669825" /db_xref="InterPro:IPR016047" /db_xref="GeneID:7260829" /translation="MRKKIFKYSALLLICFVFVLSCATFSFAGYDLGLPSPVSSPVNA GYLYGEKLNSSSTYGHMGMDFAAPIGTSIYSTYVGKVITKGDLGGASYGKYIVIESTH PYYTNTKFYHYYCHMSELSSSIQVNTTYPAGTYLGLSGQTGNASGPHLHYEIRMGANN WYAQRNPEGFLGRSSKDNYAALRGKVLTSSGSYARAIRISGATKGTDVNYGASYSYYV MENGSAFPDESAYGLNYYITRINPGSITLNYNNGARTSTVSASSNTDTLVPSVSLP" sig_peptide complement(4045717..4045803) /locus_tag="Dhaf_3808" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.886 at residue 29" gene 4047261..4047698 /locus_tag="Dhaf_3809" /db_xref="GeneID:7260830" CDS 4047261..4047698 /locus_tag="Dhaf_3809" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460261.1" /db_xref="GI:219669826" /db_xref="GeneID:7260830" /translation="MLLMKKLIVVFLTIVLCTMASPFTSYADAGNDLTPQASLYIRST SATIQPQGNGKLYLENILGATRIVDQLGVKTIEIQTLKNGYWQSTYTIVKNDYLYNTG TYVYACYYSGTPGTQYRSYVEFYVSNAGGEETKIVTSQPVTAN" sig_peptide 4047261..4047344 /locus_tag="Dhaf_3809" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.929 at residue 28" gene complement(4047776..4048645) /locus_tag="Dhaf_3810" /db_xref="GeneID:7260831" CDS complement(4047776..4048645) /locus_tag="Dhaf_3810" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460262.1" /db_xref="GI:219669827" /db_xref="GeneID:7260831" /translation="MAKERDSLDVINDKEIIRMILSEKESDVLVKEKLYRILYEASAV DEVSMDTDLIDECIKAINLIEGKEEYLSEEKMKTMRQNVDQAYKEWQSSQHKTLVGKR IAQVAAAFILIFFTSSTVASALGYNLFQSVVDWGKDTFNLSTQSQPVEEGNSNVAERK TYSDIQEVIKDIPVKPLLPQWVPEGFVFKYGETFKLQNHSKALLYFQEDSSKVIVFDL SIYAEGEQAVADTNFEKDENLVEVYEKDNIKHYILRNLGQTQAIWSHNNTVYNISGDI TADDLIKIIDSMN" gene complement(4048729..4049283) /locus_tag="Dhaf_3811" /db_xref="GeneID:7260832" CDS complement(4048729..4049283) /locus_tag="Dhaf_3811" /inference="protein motif:TFAM:TIGR02937" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: cth:Cthe_2992 ECF subfamily RNA polymerase sigma-24 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_002460263.1" /db_xref="GI:219669828" /db_xref="InterPro:IPR014284" /db_xref="GeneID:7260832" /translation="MWPWNRLKDETFYEDLCYKYYERIYLYCLRRVKGQEELLDLVEE CTQNTFLEARKQLAKLVNHPNVEGWLYTTARNLVNLSFRSMYTKNKYEISMDDHILEA WAQVDNELEELFNGTADLDKLCEEILEGLQADEYELYRDYFKNNMSVSELAGKHEISA TAMTTRIYRLKKKIKKSVRIYFEK" gene complement(4049760..4053356) /locus_tag="Dhaf_3812" /db_xref="GeneID:7260833" CDS complement(4049760..4053356) /locus_tag="Dhaf_3812" /inference="protein motif:TFAM:TIGR02168" /note="TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: gtn:GTNG_1046 SMC protein (chromosome partition protein)" /codon_start=1 /transl_table=11 /product="chromosome segregation protein SMC" /protein_id="YP_002460264.1" /db_xref="GI:219669829" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR010935" /db_xref="InterPro:IPR011890" /db_xref="GeneID:7260833" /translation="MAKADTLPVFLKSITIQGFKSFADKVKLELGQGLSVVVGPNGSG KSNVADAIRWVLGEQSAKNLRGSKMEDVIFSGSSVRRPVGMAEVSLFFDNSTGIFPLE YQEVIITRRVYRDGEGQYFINRSSCRLKDIHELFMDTGAGKEGFSIIGQGRVEEILNL RSEERRTLIEEASGITKYRMRKREALKRLDETEHNLERIRDILAEIEGQLGPLEEQAT IAREAVELTTEQKALEIEMVAFDLKEVRHKLTSSVQETEELQSAIAAAVADLSQKESG ILSNKVKLNLLDEQIQKQQETTYQLDQAVNQIVQELRLRQEREGYLGEQINRVTTELS NHEEKVRQSTEQLRALEDRKALLHKTLDQANQALAADEQRLVEAKARNGLEEIEILRG SLSHLQSKLAESSAELNRLTHQLATLNSTHEQLIKEKKDKEGALLSHEQQEAQVQEQL KTQEGLQTDIRLQAEKAQQENAQFREQSKAGQRELQELNRDLEKKSARYHALKNLEDS LEGYQRGVRELMLAKKKNQPSCGDLCGTLADLLQVEERYEVAIEVALGAGIQNIVTAT ERGAKEAVHYLKSHNLGRATFLPLDVIQGGKAAVAKEAAKDPGFIGVAVDLITFAEKY RKAFESQLGRTLIVTDMEAATRVARASGYRARIVTLEGDQVHPGGSLTGGSLQRKGSN ILGRSREIQELRQECDERRTQQKELELKAGALSIQIQKGEENLKHLMAEEQELKSALA VLRTQELNLRAQAQRIRDEITAVTIRVAGIEQERDELQSHKALEAEEQSKLTDSIQEA QEALARQEEKNRQASREMEQLQERLTQTKVQAAKWEQELKQAVERLVQDQALLGENKH LLERKRKDLQDLEESKARLAFEQGDWESRRREAGEQQQQAQEVLIALRKEREVLSKEL MDQEGLAQKKRQEQQTLEQKLHNLELKTARWDAEWETGSKRLLEEFDLTWEEAQAYQS ERNRAELAARVQEIKLRMELLGPVNQAAIEEYPKLQERFDFLSVQKQDLEEANESLQQ LIAELDKTMSERFEEGFIAVNEAFKVVFKELFNGGYAELRLVDPANLLDTGVEIIAQP PGKKPQLLSLLSGGERALTAIGLLFALLKVKPSPFCVLDEIEASLDDANVSRFAQYIH RLANSTQFLVISHRKGTMEAADVLYGITMEESGVSKLLSVQLEGQDKDTRMA" gene complement(4053349..4054137) /locus_tag="Dhaf_3813" /db_xref="GeneID:7260834" CDS complement(4053349..4054137) /locus_tag="Dhaf_3813" /EC_number="3.1.26.3" /inference="protein motif:PRIAM:3.1.26.3" /note="PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: pth:PTH_1738 dsRNA-specific ribonuclease" /codon_start=1 /transl_table=11 /product="Ribonuclease III" /protein_id="YP_002460265.1" /db_xref="GI:219669830" /db_xref="InterPro:IPR000999" /db_xref="InterPro:IPR001159" /db_xref="InterPro:IPR011907" /db_xref="GeneID:7260834" /translation="MEKKHQGTAKTTKHNLQGNKRHKYHADTLQRIPTGIGLAKRLEL DDPPNRLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEG ELTKMRAAVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVY LQYGFQEARRVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQREETEVTYRILAEEGPDH NKRFTAGVFLQGNLRGKGIGRTKKEAEQRAAQQVLDEFGGENNG" gene complement(4054158..4055396) /locus_tag="Dhaf_3814" /db_xref="GeneID:7260835" CDS complement(4054158..4055396) /locus_tag="Dhaf_3814" /inference="protein motif:TFAM:TIGR03150" /note="TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: pth:PTH_1739 3-oxoacyl-(acyl-carrier-protein) synthase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) synthase 2" /protein_id="YP_002460266.1" /db_xref="GI:219669831" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR017568" /db_xref="GeneID:7260835" /translation="MEKQRAVITGMGVVSPVGSNLETFWNSLITGQSGIDFVTRFDVG DMPTKVAGEIKDFEPTDWLDRKESRHMDRFTQLAMAAAKMAVQDSGLNLDQVNKERAS CIVGTGVGGVTTLEQQKEVLMNKGPGRISPFFIPMLISNMAAGHISLEFGLQGSSLSV ATACASATNAIGEAMRLIEHGYADVVLCGGTEAPIVPLAFAGFCAMKAMSTEKENPRE ACRPFDARRSGFVMGEGAGILVLESLEHAQKRQARIYAELSGYGSTCDAYHITSPAPG GAGAIQSMQAALTGAEVRPEEVDYINAHGTGTNANDSAETAAIKALFGEAAQKVAISS TKSMTGHLLGAAGAIEAIACALTIKNSMIPPTINYGEPDPECDLDYVPNAARPKEVQV ALSNTFGFGGHNATIVLKRY" gene complement(4055445..4056389) /locus_tag="Dhaf_3815" /db_xref="GeneID:7260836" CDS complement(4055445..4056389) /locus_tag="Dhaf_3815" /inference="protein motif:PFAM:PF03060" /note="PFAM: 2-nitropropane dioxygenase NPD; KEGG: hmo:HM1_2167 2-nitropropane dioxygenase" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="YP_002460267.1" /db_xref="GI:219669832" /db_xref="InterPro:IPR004136" /db_xref="GeneID:7260836" /translation="MKIPELRIAHHIAKMPVIQGGMAVRISMAPLAAAVAEEGGIGLI AGSGLSVEELKQEIREARKRTKGIIGVNIMFAVREFAQLVKAAFDEKIDLLVSGAGFS RDMFTWGQEAGIPVVPIVSSAKLARLSEKLGAAAVIVEGHEAGGHLGTERPMREILPE VKEAVKIPVIGAGGVMDGQDVAEVLRLGADGVQMGTRFALSTESSAAPEWKQHLLDAQ AEDMVIVHSPVGLPGRGIRNPFTEALAAGKNVRRIGCDQCLKHCERNFCIMERLIKAQ QGDMKEGLVFSGAHYSRIKKVLSVHEIFEDIREQILRA" gene complement(4056632..4056859) /gene="acpP" /locus_tag="Dhaf_3816" /db_xref="GeneID:7260837" CDS complement(4056632..4056859) /gene="acpP" /locus_tag="Dhaf_3816" /inference="protein motif:TFAM:TIGR00517" /note="carries the fatty acid chain in fatty acid biosynthesis" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="YP_002460268.1" /db_xref="GI:219669833" /db_xref="InterPro:IPR003231" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR006163" /db_xref="GeneID:7260837" /translation="MSVFDKVKSIVVDQLGVEEDEITLETTFADLNADSLDIVELIMA LEEEFDLDIPDEDAEKIRNVGDAVNYIKENQ" gene complement(4056898..4057641) /locus_tag="Dhaf_3817" /db_xref="GeneID:7260838" CDS complement(4056898..4057641) /locus_tag="Dhaf_3817" /inference="protein motif:TFAM:TIGR01830" /note="TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: lsp:Bsph_1519 3-oxoacyl-(acyl-carrier protein) reductase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_002460269.1" /db_xref="GI:219669834" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR002424" /db_xref="InterPro:IPR011284" /db_xref="InterPro:IPR013968" /db_xref="GeneID:7260838" /translation="MLLNNSVAIVTGGSRGIGRAIALELARAGAKVVVNYAGHGEKAE ETLSLIQEAGGEALAVQADVSQVEDVERLIQTTLKTYGKIDILVNNAGITRDTLLLRM KETDWDAVLDTNLKGVFLCTKAVSKSMMKQRSGVIINISSVVGITGNAGQANYSAAKA GIIGFTKSIAKELGSRGIRVNAVAPGYISTDMTESLGEEVREQVMTQIPLGRMGQPED IARTVVFLASPAASYITGQTLAVDGGMAM" gene complement(4057647..4058588) /locus_tag="Dhaf_3818" /db_xref="GeneID:7260839" CDS complement(4057647..4058588) /locus_tag="Dhaf_3818" /inference="protein motif:TFAM:TIGR00128" /note="TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: drm:Dred_2073 malonyl CoA-acyl carrier protein transacylase" /codon_start=1 /transl_table=11 /product="malonyl CoA-acyl carrier protein transacylase" /protein_id="YP_002460270.1" /db_xref="GI:219669835" /db_xref="InterPro:IPR004410" /db_xref="InterPro:IPR014043" /db_xref="GeneID:7260839" /translation="MAKIACIFPGQGSQYVGMGKELFATGWGQEVLTTGQRVLGEELI RILLEGPEEELKKTTYTQPAILLTSMAAWRGLQEAGIRPDYLAGHSLGEYSAYTAAGS ISLEEALRVVRRRGELMQAAVPEGQGAMAAILGLENAKVEEACRQAREEGGWIVGPAN YNSPGQVVISGETDGVQKACHYAKELGAKRALPLAVSGPFHSPLMAEAGKELRQVLAA VAWQDPNVPVIANIDAQEVREGSMIVESLVRQVSGAVLWEQSIRLLGEQGVDTFIELG PGKVLTGLVKKILPGATLINVEDSSSLGKATCIFKGE" gene complement(4058607..4059554) /locus_tag="Dhaf_3819" /db_xref="GeneID:7260840" CDS complement(4058607..4059554) /locus_tag="Dhaf_3819" /inference="protein motif:TFAM:TIGR03151" /note="TIGRFAM: enoyl-(acyl-carrier-protein) reductase II; PFAM: 2-nitropropane dioxygenase NPD; KEGG: drm:Dred_2074 2-nitropropane dioxygenase, NPD" /codon_start=1 /transl_table=11 /product="enoyl-(acyl-carrier-protein) reductase II" /protein_id="YP_002460271.1" /db_xref="GI:219669836" /db_xref="InterPro:IPR004136" /db_xref="InterPro:IPR017569" /db_xref="GeneID:7260840" /translation="MIKTKLCDLIGIEYPIFQGGMAWTATGELAAAVSEAGGLGIIGA GQAPADWLRQEIHKIKKVTNKPYGVNVMLMSPFVEDVMQVIVEERVPVITTGAGNPGK YIPMLKEVGTKIIPVVASVALARRLEKAGVDALIAEGMESGGHIGEISTLPLVPQVVD AVSIPVIAAGGIYDGRGMVAALALGAEGVQMGTRFMCAEECTISSKVKEMILKAKDRD TVVTGRSTGHPVRCLGNKLTREFEQLEKEGTDPEVLEKMGAGKLRLAMVEGDTQNGSV MSGQIAGAVQKIEPAAVIIQDVMQGAERELARLSQRFGR" gene complement(4059558..4060553) /locus_tag="Dhaf_3820" /db_xref="GeneID:7260841" CDS complement(4059558..4060553) /locus_tag="Dhaf_3820" /EC_number="2.3.1.41" /inference="protein motif:TFAM:TIGR00747" /note="FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl carrier protein) synthase III" /protein_id="YP_002460272.1" /db_xref="GI:219669837" /db_xref="InterPro:IPR004655" /db_xref="InterPro:IPR013747" /db_xref="InterPro:IPR013751" /db_xref="GeneID:7260841" /translation="MVSVGIVGTGSYVPDKVLTNFDLEQMVDTNDQWIVSRTGIKERH IAAPETPVSELCYQAALRALEDAKLAPEELDLVIVATITPDFVFPATACLVAERLGAK KAAGFDLQAACTGFLYGVATAAQFIATGIYKNALVIGGETLSKILNWEDRGTCILFGD GAGAAVLQPVEEGYGFLGYDLGMDGAGGSLLTMPGGGSMHPASAETVAKKMHTIQMAG SEVFKFAVRIMGETALKALDKAGLGIGDVDCLIPHQANTRIVDAAVKRLGIDAGKVVV NLDRYGNMSAASIPVALDEAARSGRLNYGDIMVMVGFGGGLTWGAAVVKWSKRGV" gene complement(4060594..4061598) /locus_tag="Dhaf_3821" /db_xref="GeneID:7260842" CDS complement(4060594..4061598) /locus_tag="Dhaf_3821" /inference="protein motif:TFAM:TIGR00182" /note="involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY" /codon_start=1 /transl_table=11 /product="putative glycerol-3-phosphate acyltransferase PlsX" /protein_id="YP_002460273.1" /db_xref="GI:219669838" /db_xref="InterPro:IPR003664" /db_xref="GeneID:7260842" /translation="MRIAVDAMGGDHAPAEIVKGALRSIEQFDIEVILVGQPERIKEF LPQGEVPARVRIKEATEVVEMDEHPAQAVRRKKDSSIVVATRLVKEGEADALVSAGST GAQMAASLLGLGRIKGIDRPAIVTVLPTLEGGKLLLDVGANPDAKPEHLLQYAMMGSI YAESILGIQNPKVGLLNIGTEETKGNELTQATYPLLQKAPLNFIGNVEGRAIPYGQAA DVVVCEGFVGNVVLKTTEGLAGALFQLIKEKITATPLRKLGALAIKPGLKEIAKMMDY AEYGGAPLLGVNGISIISHGSSNEKAIFNAIRVAKECVESGFIEEIKKELPRFTAAQE" gene complement(4061617..4062186) /locus_tag="Dhaf_3822" /db_xref="GeneID:7260843" CDS complement(4061617..4062186) /locus_tag="Dhaf_3822" /inference="similar to AA sequence:KEGG:STH1446" /note="negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria" /codon_start=1 /transl_table=11 /product="fatty acid biosynthesis transcriptional regulator" /protein_id="YP_002460274.1" /db_xref="GI:219669839" /db_xref="GeneID:7260843" /translation="MTRHHKHERHQALREEIDKNPFSTDEELARHFGVSVSTIRLDRT ELSIPELRERTKAVAHEAYDTLKSLGEAELVGELRGLHIGESGSTLLKIEESMVLSKA RVTRGHHLFAQANSLAIALVDAEIVLTGSVDMKFLRPVRYGETVLAEGKVLRRKGNKY WVEITAHVNQDLVLTGTWVVFAVEKPLEV" gene complement(4062478..4063917) /locus_tag="Dhaf_3823" /db_xref="GeneID:7260844" CDS complement(4062478..4063917) /locus_tag="Dhaf_3823" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sen:SACE_5266 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460275.1" /db_xref="GI:219669840" /db_xref="GeneID:7260844" /translation="MKIISDKIRTRRDFAFYVFKKASFQSLLRFADIILEIVGFIMLI IGLPVAIISTQLVCSVLGAVIFFIGLILNIIKYGKYSKYELKRTNAFDITKIIQCESE FSSDKGTVEFTREELILSENSEGKKDIDWIFMSHELNKYLCDTSYTLKLEDQKDDSVK KEQITRLIKGHWDTLSRYLIHKATEAFKNGKAFYNEDKLCMADGFSLNSDAHVLKINC SKGGYYDSYLTNNIYEHRLRDKNGDKKSIAYASEAFSQMRPYSKKGDKYNKADISESD TLRAYRNTLLNNEFGVSTIAITRDNYIFQLIQSDRAQSSGQLIVPSGSGSCDYDDICG DDFRKTITYAMQRELWEETGFKCPRKQKRQRIEKFGETHVIGFFRWLKRNGKPEMLGI SYIDVNYNDIKPNAAEVKKEAVLVDRIRTIDDLKEYLKRIKAQTHPIGYNDYDGVSVP LLALVIALEELLKDTEMALKVANVLRLQV" gene complement(4064257..4064436) /gene="rpmF" /locus_tag="Dhaf_3824" /db_xref="GeneID:7260845" CDS complement(4064257..4064436) /gene="rpmF" /locus_tag="Dhaf_3824" /inference="protein motif:TFAM:TIGR01031" /note="some L32 proteins have zinc finger motifs consisting of CXXC while others do not" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L32" /protein_id="YP_002460276.1" /db_xref="GI:219669841" /db_xref="InterPro:IPR002677" /db_xref="GeneID:7260845" /translation="MGVAQHRQSKSRVRKRRAMWKLTAPNHIECPQCHKPKLSHHVCP SCGYYKAKEVISMGE" gene complement(4064467..4064976) /locus_tag="Dhaf_3825" /db_xref="GeneID:7260846" CDS complement(4064467..4064976) /locus_tag="Dhaf_3825" /inference="protein motif:PFAM:PF02620" /note="PFAM: protein of unknown function DUF177; KEGG: pth:PTH_1748 metal-binding protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF177" /protein_id="YP_002460277.1" /db_xref="GI:219669842" /db_xref="InterPro:IPR003772" /db_xref="GeneID:7260846" /translation="MHINVAQIRRDENGTAHFDLKEDFSAFESELEGVDFVAPVHVQL QVNNTGKSLIVNGSIETELKAQCGLCLEPFHYQIHQDYEDEWVFAPQATEEQLETALV FHKDEIDLTERILEQIVLALPMRFICSSECKGLCPVCGVNLNEKSCECSQDKIDPRFA ALANWPRED" gene complement(4065042..4066241) /locus_tag="Dhaf_3826" /db_xref="GeneID:7260847" CDS complement(4065042..4066241) /locus_tag="Dhaf_3826" /inference="protein motif:TFAM:TIGR00016" /note="TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cth:Cthe_1028 acetate kinase" /codon_start=1 /transl_table=11 /product="acetate kinase" /protein_id="YP_002460278.1" /db_xref="GI:219669843" /db_xref="InterPro:IPR000890" /db_xref="InterPro:IPR004372" /db_xref="GeneID:7260847" /translation="MKILVINCGSSSLKYQLLDMDTQTPIAKGLVERIGLPGAVLTHR PADGEKEIITAEIPNHTVAIQLVLDALVNPEYGVVKSLEEIGSVGHRVVHGGEKFASS VLITDEVMQAIEECIELAPLHNPPNIAGIEACQKLMPGVPQVAVFDTAFHQTMPPHAY LYGLPYEFYEKYKIRKYGFHGTSHKYVSQRAAKLLNRPAEGLKLISCHLGNGSSITAI KDGKSIETSMGFTPLEGLMMGTRSGDLDPAIVSFIQQKENLSSDEVNDFLNKKCGVLG LSGVSSDFRDIEQARDQGNYRAALALDVFSHDVKKYIGSYAAVLNGADAIIFTAGLGE NSAEMREAVVDGLQYLGAKLDLEKNKVRGKEADISAPEATCRVLVIPTNEELMIALDT LDIIQKG" gene complement(4066453..4067214) /locus_tag="Dhaf_3827" /db_xref="GeneID:7260848" CDS complement(4066453..4067214) /locus_tag="Dhaf_3827" /inference="protein motif:PFAM:PF01734" /note="PFAM: Patatin; KEGG: nth:Nther_1351 patatin" /codon_start=1 /transl_table=11 /product="Patatin" /protein_id="YP_002460279.1" /db_xref="GI:219669844" /db_xref="InterPro:IPR002641" /db_xref="GeneID:7260848" /translation="MMERGLVLGAGGARGLAHLGFLQVLEEESIKVDCIVGCSIGAVF GALWAAGMDLYRLERLITYQGFSKRLWDLAVSRDGLVKGEKVLEAMRLLTRDLTFAEL KIPLAVVATDLETGERVVFREGSVAHAVRASISIPGIFKPYRYQGRLFVDGAVKNRLP IQVAKDIGAEKVLAVDVKKGLSTKLNTAMDVMLQALEILEEEVFCTQKEKADVLIQPE VGHIGVLQFDLAEEAIALGRTAAKSQISEIVRNFY" gene 4067293..4068447 /locus_tag="Dhaf_3828" /db_xref="GeneID:7260849" CDS 4067293..4068447 /locus_tag="Dhaf_3828" /inference="protein motif:PFAM:PF07670" /note="PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_0938 nucleoside recognition" /codon_start=1 /transl_table=11 /product="nucleoside recognition domain protein" /protein_id="YP_002460280.1" /db_xref="GI:219669845" /db_xref="InterPro:IPR011642" /db_xref="GeneID:7260849" /translation="MASILRVIPFFLLAIGMFYYPQEVVRSAADGLSLWWNYVVPALL PFFILSELLLASGFVHFLGVLMEPLMRPVFRLPGQASFVVAMSLTSGIPIGAILTTRL CQENALSQIEGERLLTFTCNPSPGFMFGAVASSMLLKPELGIVLVGSVYLGNILVGIL FRFYGGRGTSSSPAPTSLGRAVQALRKAQGQDPRPFGQMFGDAVRQSVNTILVVGGFI VFFSVLVNMLETYHITGGIGTLIHGLSGGLVSGQEVSALVNGTLEATLGCRSIIDSFS SLNLTIGLLAGVLGWGGLSAFAQVASFTGSANLRFLPFVIGRILHSIFAFLLSQLFLT LIKIPVFDLHLAPGPFGFMETWQMSSWIFCGIMLCFLLLSLGVRVFYSSK" gene complement(4068655..4069188) /locus_tag="Dhaf_3829" /db_xref="GeneID:7260850" CDS complement(4068655..4069188) /locus_tag="Dhaf_3829" /inference="similar to AA sequence:KEGG:HM1_2155" /note="KEGG: hmo:HM1_2155 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460281.1" /db_xref="GI:219669846" /db_xref="GeneID:7260850" /translation="MNRLERIALENDVMALLDELEEIVDRGTKIPMTGKVLVDDHVVF DLLDRIRAALPEELQNAKWVLSERQKIMDEAHTEAERLLERGKTYIEKMAEESEIVKQ AQGYAEDIARQAQAYAKEVKLGAIQYTDEMLLQVEQNVAETLQAVRRNREELRSLAKR DQREKPGDKGNPAQGES" gene complement(4069185..4069727) /locus_tag="Dhaf_3830" /db_xref="GeneID:7260851" CDS complement(4069185..4069727) /locus_tag="Dhaf_3830" /inference="protein motif:TFAM:TIGR00095" /note="TIGRFAM: methyltransferase; PFAM: methyltransferase small; Protein of unknown function methylase putative; KEGG: cth:Cthe_1277 putative methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_002460282.1" /db_xref="GI:219669847" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR004398" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR016065" /db_xref="GeneID:7260851" /translation="MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEKTPGAR VLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGIEQARLIGMDAFAY LEQHREERFDLIFIDPPYHQGLVEKSLKLLAAPCRLTDSGVIIAETAKDENLESYDPF EIKKTGEYGDTKIWYLQRTE" gene 4070022..4071008 /locus_tag="Dhaf_3831" /db_xref="GeneID:7260852" CDS 4070022..4071008 /locus_tag="Dhaf_3831" /EC_number="3.4.24.78" /inference="protein motif:TFAM:TIGR01441" /note="Initiates the rapid degradation of small, acid-soluble proteins during spore germination" /codon_start=1 /transl_table=11 /product="germination protease" /protein_id="YP_002460283.1" /db_xref="GI:219669848" /db_xref="InterPro:IPR005080" /db_xref="GeneID:7260852" /translation="MKKADLFRNFNVTIDLAVEAHELLRGDADTEVPGVSMEEEDFEH ATVTTIKILNEQGVQEMGRPQGTYITIDVPEVHDNNYLIHQEITKTLSDKLSKLMNLP EDASILLVGLGNWNATPDALGPQVIDKSLVTRHLFNYTPAELQGKLRKVSAIAPGVLG ITGIETAEIIRGIVEHVKPDLVIAIDALAAGSLERIGTSIQISDTGISPGAGVGNHRT GINEETLGCRVIAIGLPTVMNAAIIANNCLESLLDELKSSPSLYRLYKEFSPKVFEQI LNKALYPYHNNLMVTPKEIDSLIETTARIIAGALGMSLHPGISVEEYQMYMQ" gene complement(4071009..4071611) /locus_tag="Dhaf_3832" /db_xref="GeneID:7260853" CDS complement(4071009..4071611) /locus_tag="Dhaf_3832" /inference="protein motif:PFAM:PF01797" /note="PFAM: transposase IS200-family protein; KEGG: cth:Cthe_2031 transposase IS200-like protein" /codon_start=1 /transl_table=11 /product="transposase IS200-family protein" /protein_id="YP_002460284.1" /db_xref="GI:219669849" /db_xref="InterPro:IPR002686" /db_xref="GeneID:7260853" /translation="MDTESLAHTRWNCKYHIVFAPKYRRQIIYGKIKKDIGKIIRTLC DYKKVEIIEANACADHIHMLVSIPPKLSVSAFMGYLKGKSSLMIFDRHANLKYKYGNR HFWCRGYYVDTVGRNKKAIEQYIRKQLQEDIAADQLSIKEFIDPFTGETVEKKKNSPP TPLGVARDRVRLAELSVSLKAQPVPCPYRARANHPLSGWS" gene complement(4071793..4071915) /locus_tag="Dhaf_3833" /db_xref="GeneID:7260854" CDS complement(4071793..4071915) /locus_tag="Dhaf_3833" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460285.1" /db_xref="GI:219669850" /db_xref="InterPro:IPR001448" /db_xref="GeneID:7260854" /translation="MADTKQTNQPVLSAALEQFKYEVAQEIGIANRKHKKFPNT" gene complement(4072055..4074472) /locus_tag="Dhaf_3834" /db_xref="GeneID:7260855" CDS complement(4072055..4074472) /locus_tag="Dhaf_3834" /inference="protein motif:TFAM:TIGR00643" /note="KEGG: dth:DICTH_1012 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase RecG" /protein_id="YP_002460286.1" /db_xref="GI:219669851" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004609" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260855" /translation="MIGNQGKIVLNHLQRAIAAEEKQGCCNTGVIGGFHLFLKGILSR LEQLEKNEDFKVLKDITGHYKDWSPLQRRQALAHLRRFIEEHQELEAHQEAGSQGQAS VQPENRSLPEKEPPQPSDTLPVSEKSDPDKKERTAKPSPSRSLQFLKGVGPERAKLLA QIGLHTVKDLFFYFPRRYEDRSLQSIGELKDGELASVAGKVVAGQIARGKLKVVKLSI EQDGRLVYAVWFNQTYILKQYPVGTSVIVTGKVRWQQRVPEIQATDIQKAGAAQPAAI LPVYSETARLSSKVIRTIVQGVLGQAPELFPEFLPPEEGKGWVPRAQAYQEIHFPRTF HSLGQARERLVFEEVLFLQLSVARLRSGVQRENSPQLKSGESLVQRFLASLPFELTQA QKRVIQEIFRDMANTQGMARLVQGDVGSGKTAVAMAALLMAVGSGYQGAMMAPTEILA LQHYQSLAAAFKPLGLHVVCLLGSQTKSERDKILTEIAYGKAHVIVGTHALIQESVQF HSLGLAITDEQHRFGVKQRTSLQTKGENPHVLVLTATPIPRTLALTLYGDLQLSALDE MPQGRKPIMTRKLTERGRPSLEKFMEEQMEKGRQIYVVCPLVEESENVDLISATERFQ SLLERFPNRRVSLLHGRMKGVQKEEIMTAFQKGEVDILVSTTVVEVGVNVPNATVMVI EGAERFGLAQLHQLRGRVGRGSEQSYCFLLSDAKNSRRLEVLCETQDGFKIAEEDLKI RGAGELLGTRQHGVMELRLADLSRDGRLVEQAYQLAQKVLTHPDRYPGVWQECDQFFS LENIGLH" gene complement(4074469..4075332) /locus_tag="Dhaf_3835" /db_xref="GeneID:7260856" CDS complement(4074469..4075332) /locus_tag="Dhaf_3835" /EC_number="4.3.1.17" /inference="protein motif:TFAM:TIGR00718" /note="KEGG: cno:NT01CX_1254 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain" /codon_start=1 /transl_table=11 /product="L-serine dehydratase, iron-sulfur-dependent, alpha subunit" /protein_id="YP_002460287.1" /db_xref="GI:219669852" /db_xref="InterPro:IPR004642" /db_xref="InterPro:IPR005130" /db_xref="GeneID:7260856" /translation="MRSTMDYLALAEEKGKRFGEIVLKEQAEEAEKSQDELRTRMAAN LQVMREAVQSGLRGERKSLSGLVGGEALKVETLRRSGKSLIGERVSGAIARALAVVEV NASMGKIVAAPTAGSCGVLPAVLLTAEEALGSSEEDMMTALFCAAGIGMIIADRANVS GAEGGCQAEIGSAAGMAAAAAAELAGGSPQACIHAAAIAMKSFLGLVCDPVAGLVEVP CVKRNATAATVALAAAEMALSGIESAIPLDEVIDAMNEIGKSMPCSLRETAQGGLAIT PTGQRIQAEFL" gene complement(4075373..4076044) /locus_tag="Dhaf_3836" /db_xref="GeneID:7260857" CDS complement(4075373..4076044) /locus_tag="Dhaf_3836" /inference="protein motif:TFAM:TIGR00719" /note="TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: mta:Moth_1947 L-serine ammonia-lyase" /codon_start=1 /transl_table=11 /product="L-serine dehydratase, iron-sulfur-dependent, beta subunit" /protein_id="YP_002460288.1" /db_xref="GI:219669853" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004643" /db_xref="InterPro:IPR005131" /db_xref="GeneID:7260857" /translation="MGRSTVFDLIGPVMVGPSSSHTAGAVRLGAMARKICGGQIVEAV LTLHGSFAETGKGHGTNLALAAGLLGMHTDDERIPQALAMAEEQGIAIKFRSGDLGDV HPNTVKIKLKAKEGQEVEVVGSSIGGGRIIIGGIDQFKVEIMGDYHTLVVLQNDLPGV VAQVSSLIAATQINIAQMRVSREKKGAHALMIIETDQAIDPAALALIKKLPAVNQAMA IEPLD" gene complement(4076127..4077809) /locus_tag="Dhaf_3837" /db_xref="GeneID:7260858" CDS complement(4076127..4077809) /locus_tag="Dhaf_3837" /inference="protein motif:PFAM:PF02734" /note="PFAM: Dak phosphatase; KEGG: aoe:Clos_1440 Dak phosphatase" /codon_start=1 /transl_table=11 /product="Dak phosphatase" /protein_id="YP_002460289.1" /db_xref="GI:219669854" /db_xref="InterPro:IPR004007" /db_xref="GeneID:7260858" /translation="MNGDTGNMITGQQWKQMMRSGARALERKKHDVDALNVFPVPDGD TGTNMNFTIQSAVRDADKTSGATVAEVAAAVSMGSLMGARGNSGVILSQLLRGIAKGL EGHKEAGGQQIAQALQMGVDTAYKAVMRPVEGTILTVAREVAKGAQSSAKQGSDPVKV LKDAYGRGQLTLEKTPDMLPTLKQAGVVDAGGQGFLIILSGWIAALEGQEIEEENVLP VSQVEPQTVRGITAVEDLEFPYCTEFLVKGQNLQVEKIREDLADRGDSLLVVGTEEVV KIHVHVKNPGKILDYAIQWGTLHEVAIHNMLAQNEAMAHAQKMEDIPEENRSKAGQEQ EPGSGEEKEHGIVAVAMGEGIAEVFKSLGVDEVIFGGQTMNPSTENLVEAVRKVAAKN VYILPNNGNIVMAARQVKDIVTDRNVFIIPTKSIPQGISALVNYNPYGDAEENARTME EGLSLIKSGEVTYAVRDSQFGDLEIKEGDILGLIEDVIQVTGRERLQVAQETLGKMNW KEHDLLTVFYGEDVSEEQAQELRAWIEAEAPHIELELYPGNQPLYYYIFGVE" gene complement(4077952..4078308) /locus_tag="Dhaf_3838" /db_xref="GeneID:7260859" CDS complement(4077952..4078308) /locus_tag="Dhaf_3838" /inference="protein motif:PFAM:PF03780" /note="PFAM: protein of unknown function DUF322; KEGG: sth:STH1360 putative alkaline-shock protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF322" /protein_id="YP_002460290.1" /db_xref="GI:219669855" /db_xref="InterPro:IPR005531" /db_xref="GeneID:7260859" /translation="MGKEINNNLGKIDISEEVIATIAGAAAVECYGLVGMASRKSSDK FSELLGRENLARGVVVSIDDNQVVIDLYIIVGYGVKISEVAANVIERVRYTTENLTGL KVAQVNVNVQGVRVLD" gene 4078588..4078779 /gene="rpmB" /locus_tag="Dhaf_3839" /db_xref="GeneID:7260860" CDS 4078588..4078779 /gene="rpmB" /locus_tag="Dhaf_3839" /inference="protein motif:PFAM:PF00830" /note="required for 70S ribosome assembly" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L28" /protein_id="YP_002460291.1" /db_xref="GI:219669856" /db_xref="InterPro:IPR001383" /db_xref="GeneID:7260860" /translation="MANVCAICGKGVASGIQVSHSHIRTKRTWKPNLQRVHAIVNGTP TRISVCTRCLRSGKVQRAV" gene complement(4079604..4080488) /locus_tag="Dhaf_3840" /db_xref="GeneID:7260861" CDS complement(4079604..4080488) /locus_tag="Dhaf_3840" /inference="protein motif:PFAM:PF01430" /note="PFAM: Hsp33 protein; KEGG: drm:Dred_1343 HSP33 protein" /codon_start=1 /transl_table=11 /product="Hsp33 protein" /protein_id="YP_002460292.1" /db_xref="GI:219669857" /db_xref="InterPro:IPR000397" /db_xref="GeneID:7260861" /translation="MNNKYADELWLGTLSNGEIRWVALGMTNTVEEAANRHHTTPVAT AALGRLMGASLLLASSMKAEEAITLRLLGDGPLGGVVAVGNAQGEVRGYVHEPQVELP LNPQGKLDVSGAVGAGEFVVSRSLSNGESYTGMVPMVSGEIADDLVHYLLNSEQVRSA ALLGVMVGKDSHVAGAAGMLFQLLPDASEESIQALEAQLARIQGISQIAADSSTMAEL VAQLIGDLDYRVLEKRPVQYKCTCSKERVSETLISIGKEGFEDLIKDQQAELVCHFCN ERYHFNEEELRELYEQSK" gene complement(4080532..4081227) /locus_tag="Dhaf_3841" /db_xref="GeneID:7260862" CDS complement(4080532..4081227) /locus_tag="Dhaf_3841" /inference="protein motif:TFAM:TIGR01378" /note="TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: tte:TTE1497 thiamine pyrophosphokinase" /codon_start=1 /transl_table=11 /product="thiamine pyrophosphokinase" /protein_id="YP_002460293.1" /db_xref="GI:219669858" /db_xref="InterPro:IPR006282" /db_xref="InterPro:IPR007371" /db_xref="GeneID:7260862" /translation="MRIAVVANGEWDQEWGKRELAAYDRLIAVDGGGNHIVRAGFVPD ALLGDLDSAEPETLEICRQKGTVIVCYPAEKDETDLELALEYAVKLMEQEEGTVKAEK AGVQGWESQDVFLLGAMGGRIDHLLGNLFLLQGFLKRGVRIRMKGPDQELWLLEGLGK LTGKKGQKLSVIPITAKAVVRTEGLYYPLYDEILYRDSPRGISNVFLGEDAIVDVSEG TALIVVLSPDNRR" gene complement(4081224..4081898) /locus_tag="Dhaf_3842" /db_xref="GeneID:7260863" CDS complement(4081224..4081898) /locus_tag="Dhaf_3842" /EC_number="5.1.3.1" /inference="protein motif:PRIAM:5.1.3.1" /note="PFAM: ribulose-phosphate 3-epimerase; KEGG: drm:Dred_1716 ribulose-phosphate 3-epimerase" /codon_start=1 /transl_table=11 /product="Ribulose-phosphate 3-epimerase" /protein_id="YP_002460294.1" /db_xref="GI:219669859" /db_xref="InterPro:IPR000056" /db_xref="GeneID:7260863" /translation="MIKIAPSILSADFAHLGDQVALVEKAGAEVLHIDVMDGHFVPNI TIGPLVVKALRPYSQMRFDVHLMIEHPERFIEEFAKAGADHITVHLEATPHIHRAIQQ IKGLGLTAGVSINPATPLDGIKYILDELDMVLIMSVNPGFGGQKFIPAVLPKIEVLHR HLDQMQSSCEIEVDGGINLDTAPAVVKAGANILVAGAAVFACADPARAVQELREAAQG YKGDPK" gene complement(4081900..4082790) /locus_tag="Dhaf_3843" /db_xref="GeneID:7260864" CDS complement(4081900..4082790) /locus_tag="Dhaf_3843" /inference="protein motif:TFAM:TIGR00157" /note="TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: drm:Dred_1715 ribosome small subunit-dependent GTPase A" /codon_start=1 /transl_table=11 /product="ribosome small subunit-dependent GTPase A" /protein_id="YP_002460295.1" /db_xref="GI:219669860" /db_xref="InterPro:IPR004881" /db_xref="InterPro:IPR010914" /db_xref="GeneID:7260864" /translation="MISGILLKGYSGFYYVFAEGRVWECSLRGRFRIRNQGFLPGDRV KILPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFACVSPAPDLNLLDRLIVQVTA AQIKPILVLNKIDLGSRGESTAENTFPADGLDFYRQLGCELVKVSTKTGEGLAELQEH INGKVSVLAGPSGVGKSSLVNALSPGLELKTGDVSRKLKRGRHTTRHVELMVCGEGLL ADTPGFSSLYLPAMKREELTDYFWEFQDVGECRFADCQHHKEPDCAVKAAVASGRIQP SRYEHYCQFLEEVIAAERRY" gene complement(4082827..4084566) /locus_tag="Dhaf_3844" /db_xref="GeneID:7260865" CDS complement(4082827..4084566) /locus_tag="Dhaf_3844" /inference="protein motif:PFAM:PF00069" /note="PFAM: tyrosine protein kinase; PASTA domain containing protein; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: pth:PTH_1781 serine/threonine protein kinase" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase with PASTA sensor(s)" /protein_id="YP_002460296.1" /db_xref="GI:219669861" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR005543" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR017442" /db_xref="GeneID:7260865" /translation="MSKILSNRYEIIEKIGSGGMAIVYKAKDLLLNRIVAIKILHEQF TADEEFVRRFRREAQSAASLSHANIVSIYDVGKDGETEYIVMEHIEGQNLKDIIRNYA PLSTEQTLELGIQIAEAIRHAHEHHIIHRDIKPHNILVTEDGRIKVTDFGIARAVSAA TMTHTGDIVGSVHYLSPEQARGIQTNEQSDLYSLGIILYELLTGKVPYDGETPISIAL KHLQELAVPPSKLNARVSPALENLVMRSIAKSPDQRYATAKDLLQDLRKVQAGLPVDK TVDEDQDLESTRVHSSLRAGVNSALASEEKEAGRKKAKVPLFRKRWPWVALLALVLIM GGGWVALSQWFNVGTTTVPPLVGKTIQEAGYFAEQKGLSLDPNTQEEYNNDMEKGKIT RTDPEEGAVVKKERGIKVWVSLGPEQARIPNLKTGDITQEAAINFLESQGFKRDNIVA QEDQNSSLPKGIVVEQDPAPGSDWPKNGKITLTVSAGKVDEPKPMPNVISRSPADAKA ILEQQYELKVIVDSENSTEYPSDVVMATDPKPGDMVKKGDTVRIIISRGPGPIAFNPV ILGHVAKLDKIAQ" gene complement(4084563..4085981) /locus_tag="Dhaf_3845" /db_xref="GeneID:7260866" CDS complement(4084563..4085981) /locus_tag="Dhaf_3845" /EC_number="2.4.1.129" /inference="protein motif:PRIAM:2.4.1.129" /note="PFAM: penicillin-binding protein transpeptidase; KEGG: mta:Moth_0911 peptidoglycan glycosyltransferase" /codon_start=1 /transl_table=11 /product="Peptidoglycan glycosyltransferase" /protein_id="YP_002460297.1" /db_xref="GI:219669862" /db_xref="InterPro:IPR001460" /db_xref="GeneID:7260866" /translation="MKKGLRNVAIGFSLSIIGLSFGLVYWQVARSAELMDNPANRRLI LMEQRVVRGGIFDRNGEVLAQTEVKEDEKTRIYPKGEALEPLIGYATLLRGSSGLEAH LGDWLLGIKDATAEQTLEQVFQLPRQGNDVVLTLDYGLQKVAYEGLKGKIGSAVAIDP RNGEVLALVSQPSFDGNTVDEDWENISKKPGSPFLNHAFALYTPGSTLKVMTSAALLR AGLDTSDLYHCTGTAIINGQVIREQNDKAHGWVNYNLALAESCNTYFATYGVQAGDKV FLEAAKSFGFGQEIPFELPVKRSTLTNEEAVPSRMDDNLLAASAFGQGEVLVSPFHMA LITAGIANQGVIMKPHIVDQVMDENQNVLYRKKPEPWLTPLSSQEAERIKSAMVTAVN EGTAAPGGIAGFQVAAKTGSAEPGGNVRTHAWYIAFAPADNPQIAVAVLVENGGTGGG ASAPIARAIIETALRQKAGDNS" sig_peptide complement(4084563..4084658) /locus_tag="Dhaf_3845" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.859) with cleavage site probability 0.422 at residue 32" gene complement(4085978..4087264) /locus_tag="Dhaf_3846" /db_xref="GeneID:7260867" CDS complement(4085978..4087264) /locus_tag="Dhaf_3846" /inference="protein motif:PFAM:PF01098" /note="PFAM: cell cycle protein; KEGG: pth:PTH_1783 cell division membrane protein" /codon_start=1 /transl_table=11 /product="cell cycle protein" /protein_id="YP_002460298.1" /db_xref="GI:219669863" /db_xref="InterPro:IPR001182" /db_xref="GeneID:7260867" /translation="MKRVWILRLLILSILWVGLGVLALDGKANEQILWQAGVFSLLLL IGAALEKLVAYQGDPFLLPTVQMILVIGLVFITRIRPASALKQFWWACLGLFIFYCVL YALRDYRALGRFRYLSGLGAVVLLLITLLFGVTQGGATSWLHIGGMGFESEELVKVAM LIFLASYLSEHEEVLRVGTVQIGRLSLPDWRTLGPFLVMGGFSLLLLAAQKSLGTALV FYSLYVLVLYVVTERVLYLGVALPVFLSTGTLGYFLFSHVQVRVATWLNPWGDPSGGG YQIAQSLFAIGGGKILGTGLGNGIGASQVPAASTDFIFSIIAEELGFAGAMALLMLFL VVVLRAFHISIQAADRFGQILAAGIGILVGTEAIIILAGVTKLLPLTGIPLPWVSYGG SSLLIHFLLLGILANISHAEAAGPLHIKNKGREYAA" sig_peptide complement(4085978..4086049) /locus_tag="Dhaf_3846" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.947 at residue 24" gene complement(4087269..4087988) /locus_tag="Dhaf_3847" /db_xref="GeneID:7260868" CDS complement(4087269..4087988) /locus_tag="Dhaf_3847" /inference="protein motif:PFAM:PF00481" /note="PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: drm:Dred_1711 protein phosphatase 2C domain-containing protein" /codon_start=1 /transl_table=11 /product="protein serine/threonine phosphatase" /protein_id="YP_002460299.1" /db_xref="GI:219669864" /db_xref="InterPro:IPR001932" /db_xref="InterPro:IPR010822" /db_xref="InterPro:IPR014045" /db_xref="GeneID:7260868" /translation="MRVLSFSETGCVRKNNEDAFLALPEYGVYAVADGMGGHLAGEVA ARTALDELIKGAPHLGAQENEDLENQVREILVRANREVYMSSTRNPATEGMGTTLTVL VFRETKVVLAHVGDSRAYVWRNEQLIQLTRDHSLVGELVRLGQISSEEADSHPKRHML VRAVGAGWDVEVDSQFLELQTGDIFFLCTDGVSNVISDRELEEEFLQKGSWEEHLERL HQLIIERGAPDNFTALCCITE" gene complement(4087969..4088418) /locus_tag="Dhaf_3848" /db_xref="GeneID:7260869" CDS complement(4087969..4088418) /locus_tag="Dhaf_3848" /inference="protein motif:PFAM:PF00498" /note="PFAM: Forkhead-associated protein; KEGG: pth:PTH_1785 signaling protein" /codon_start=1 /transl_table=11 /product="FHA domain containing protein" /protein_id="YP_002460300.1" /db_xref="GI:219669865" /db_xref="InterPro:IPR000253" /db_xref="GeneID:7260869" /translation="MQGILVLGRILFIGLIYLFLFRILTALLADLQVKGLIRKGEKEF GRFEVLSGGELLPKGRVFRIDQKGLKIGRGKNNDVVLADHFASMDHVLVRHHKGVTTL EDLGSTNGTWVNGERISSPVQLVAGDYVKIGSITFQYSRWQNESSKL" gene complement(4088467..4089270) /locus_tag="Dhaf_3849" /db_xref="GeneID:7260870" CDS complement(4088467..4089270) /locus_tag="Dhaf_3849" /inference="protein motif:PFAM:PF00498" /note="PFAM: Forkhead-associated protein; KEGG: pth:PTH_1786 signaling protein" /codon_start=1 /transl_table=11 /product="FHA domain containing protein" /protein_id="YP_002460301.1" /db_xref="GI:219669866" /db_xref="InterPro:IPR000253" /db_xref="GeneID:7260870" /translation="MNLLARFEEVAESLFTGMFKKNNNSRLQPVELAKELVRIMQKNK QVSISQVYVPNVYRVFLHSSDWSPFANFGDAFLIELSKYLHAEGKKSGFTFLSKPSIE LHSDDTVKPHEMFIEVDFDDSIEVLWDDDDEYEEEAQEAVESVDWRDQTNIFQGELPY NLRNSYEQSRKIRYALEIIQGPDSGKTFPLEEETIHIGRHGQCEIVLQDPEVSRRHLK LSSDGEDWVIDDLGSTNGTWLNGQRIAKQKIGLGDRVEIGQTIFILRHH" gene complement(4089267..4090340) /locus_tag="Dhaf_3850" /db_xref="GeneID:7260871" CDS complement(4089267..4090340) /locus_tag="Dhaf_3850" /inference="protein motif:TFAM:TIGR00048" /note="TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: hmo:HM1_2136 radical SAM protein" /codon_start=1 /transl_table=11 /product="radical SAM enzyme, Cfr family" /protein_id="YP_002460302.1" /db_xref="GI:219669867" /db_xref="InterPro:IPR004383" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260871" /translation="MNTMKRMDCRDLNQSELTQHCAELGLPKFRGRQVFQWVQQKAVQ NWEELRNIGAGDRQKLQEGLFLQPLRKVREQIAQDGTRKFLFRCADGETLECVLMDYD RRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPD FQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKD NPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTNRRITFEIALISGQ ATLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESMGIPVSVR EEKGTDIDAACGQLRRQLECEQK" gene complement(4090355..4091716) /locus_tag="Dhaf_3851" /db_xref="GeneID:7260872" CDS complement(4090355..4091716) /locus_tag="Dhaf_3851" /inference="protein motif:TFAM:TIGR00563" /note="TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: drm:Dred_1707 sun protein" /codon_start=1 /transl_table=11 /product="sun protein" /protein_id="YP_002460303.1" /db_xref="GI:219669868" /db_xref="InterPro:IPR001678" /db_xref="InterPro:IPR004573" /db_xref="InterPro:IPR006027" /db_xref="GeneID:7260872" /translation="MDKITSRALAVQILRRIEEEKAYANLVMQKALHDLSDPRERQLA TLLVNGTLKHRLTLDYALRRHLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINE GVELTKKQQGKYTSLVNSVLRRVLETGWDMLWPSKEKEPVRFLSLRYSHPEWMVKRWL KRYGMADTEALCQANNEPAPVWIRTNTLKISRADLQARLEGEGVKVTIGERVPESLVI EDFGSLDKLPSFQEGHFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRME NQGEILAFDIHPHKVKLIEDLAARLGITIIRAQAGDARELAGVKDASCHKVLVDAPCS GLGVLRRRADMRWHKEEDEIKTLPALQLAILERAAQCVAAGGELVYSTCTIEPEENFE VVKAFRANHPEFITVDFSGELPYSLASEQDRKQAAKGFLQILPHKQGMDGFFLAKFRR VEV" gene complement(4091753..4092715) /locus_tag="Dhaf_3852" /db_xref="GeneID:7260873" CDS complement(4091753..4092715) /locus_tag="Dhaf_3852" /EC_number="2.1.2.9" /inference="protein motif:TFAM:TIGR00460" /note="KEGG: pth:PTH_1790 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein" /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="YP_002460304.1" /db_xref="GI:219669869" /db_xref="InterPro:IPR000549" /db_xref="InterPro:IPR001555" /db_xref="InterPro:IPR002376" /db_xref="InterPro:IPR005793" /db_xref="InterPro:IPR005794" /db_xref="GeneID:7260873" /translation="MRLVFMGTPDFAVPTLQALAAHGHDVAGVFTQPDRPSGRGKNLK PSPVKTAAQELGLPVYQPPKVKSPESLEILKELAPEVIIVVAYGQLLSKEILGLPPYG CINVHASLLPDWRGAAPIHWSILKGDQRTGVTTMQMDEGLDTGDMLLKTELPIGEDTT TGELHDALAQAGAQLLIATLEQLHKGKLPRTPQKGPVRYASLLTREHEKIDWARSAQD IHNQIRGLNPWPGSYILFREETVKVWKSSISAQARGDGAEPGLPALKDFKPGEIIAWD QQGLLVQTGEGLIRIVEVQPAGKKPMPARDFFLGRRGQAGESFG" gene complement(4093298..4093750) /gene="def" /locus_tag="Dhaf_3853" /db_xref="GeneID:7260874" CDS complement(4093298..4093750) /gene="def" /locus_tag="Dhaf_3853" /EC_number="3.5.1.88" /inference="protein motif:TFAM:TIGR00079" /note="cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="YP_002460305.1" /db_xref="GI:219669870" /db_xref="InterPro:IPR000181" /db_xref="GeneID:7260874" /translation="MAIYQIVEIGSEVLREKAVPVKEITPNIAKLLDNMLDTLYDANG VGLAAPQVGVSKRVVVIDVGEGPLELINPVIIAKEGEDLDDEGCLSIPGITGQVARAA KVKVEALNRQGELQVIEGEGLLSRCLQHEIDHLEGILFVDKAKKTSRR" gene complement(4093917..4096244) /locus_tag="Dhaf_3854" /db_xref="GeneID:7260875" CDS complement(4093917..4096244) /locus_tag="Dhaf_3854" /inference="protein motif:TFAM:TIGR00595" /note="KEGG: bsu:BSU15710 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="primosomal protein N'" /protein_id="YP_002460306.1" /db_xref="GI:219669871" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR005259" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260875" /translation="MHYAEVLVDVANRRLDQVFHYQIPEGLSLKRGMRVLVPLQYRQV QGVVVRITEQLPQEIAHSALKPILGIVDTMYVVPEDLVDLALWLAETTICSIAQSLHT VWPLLKGKVEEYVIPMASQEDEDVKALKILDSETYQALAVIFRSRNKTLPLSTYLKRS GLSKTQVEHLAKQGWLKLESRFTSGVPRKVQAALTPEERVGDDLGDRESMTGMMHEAD IELNVHQGPDYLRTLTPEQGKVCEKVTQALDKQSYETLLLHGVTGSGKTEVYQRLIGE VLVKGGSAILLVPEISLTSQIARYFQDQFGEQLIVLHSGLQVGEKAKAWQDILQGKIR IVVGARSAVFAPLPDLRLIILDEEHESAYHQEENPKYHARNVARKRMEQLRGVVLLGS ATPSLEAYAAAQTGKVPLLTMEERVNRRPLPPVEVVDMREELIKGNRSMFSLSLQDKL KRTLERGEQSMLFLNRRGYSTFVVCRECGYVIRCHDCDIALTYHTQGHTMRCHYCNHE EVPPRTCPECGSRYIRFFGQGTQRVEDEIKGLYPAARILRLDFDTTRSKDAYEDILGK FRRQEADILVGTQMMAKGLDFPNVTLVGVVAADQMLNMPDFRARERTFQLLTQVAGRA GRSQKPGQVVIQTYTPEDRAIIQASQHNFKGFFWEEIGYRKARNYPPFTHVIRVTLIH EKEEKVIKGAHSLVNSLRQGIVSDQNGHTSLDILGPAPAVIPRLKNHFRWQVSVKGKL MDTLREFLHQGVRRFARDPISSGIQLNIEVDPLSM" gene complement(4096469..4096789) /locus_tag="Dhaf_3855" /db_xref="GeneID:7260876" CDS complement(4096469..4096789) /locus_tag="Dhaf_3855" /inference="protein motif:PFAM:PF01906" /note="PFAM: protein of unknown function DUF74; KEGG: sil:SPO2021 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF74" /protein_id="YP_002460307.1" /db_xref="GI:219669872" /db_xref="InterPro:IPR002765" /db_xref="GeneID:7260876" /translation="MIVTTTPNIDGRKIQNYYGIVTGEAIMGANVVRDIFAGITDIIG GRSGAYEEKLQDARQIALKEMEQNAARMGANAVVGVDIDYEVVGQSGSMLMVSASGTA VTVV" gene 4097164..4098408 /locus_tag="Dhaf_3856" /db_xref="GeneID:7260877" CDS 4097164..4098408 /locus_tag="Dhaf_3856" /inference="protein motif:TFAM:TIGR00801" /note="TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: tte:TTE2407 xanthine/uracil permease family protein" /codon_start=1 /transl_table=11 /product="uracil-xanthine permease" /protein_id="YP_002460308.1" /db_xref="GI:219669873" /db_xref="InterPro:IPR006042" /db_xref="InterPro:IPR006043" /db_xref="GeneID:7260877" /translation="MIREVQIHERLSLAQTIPLGLQHVFAMFGATVLVPFLTGLSPAV ALLSSGIGTIVFLLLTKSQIPAYLGSSFAYIASLTYFVKDQNNLAAAMGGALVIGIIY VLLFALMSYFGSSWIHKIVPPVVAGPVVAIIGLSLTPTAAGMASEQWYIAIFTLAVTA FLSIYAKGFLKIIPILAGIVIGYIVAAFAGLVDFTAVTASVSVDSWDKIIVSPINADT WQAPVFNKAAILMFAPLAFVTIIEDLGHMIVLGNITHSDPIEKPGFNRVLLGNGLATG IASFLGGPPVTTYGENIGVLAVTRVYSTFNIWVAAFIAIILSFVNPLQALIMSIPTAV MGGVSLYLFGMIGVTGLRTLIEARVDFSKNKNLIIASVIFAVGIGVQSHGVAYATLAG IILNLVLREEKDEVAGSGKEVS" gene 4098590..4098982 /locus_tag="Dhaf_3857" /db_xref="GeneID:7260878" CDS 4098590..4098982 /locus_tag="Dhaf_3857" /inference="protein motif:PFAM:PF05168" /note="PFAM: HEPN domain protein; KEGG: drm:Dred_0896 HEPN domain-containing protein" /codon_start=1 /transl_table=11 /product="HEPN domain protein" /protein_id="YP_002460309.1" /db_xref="GI:219669874" /db_xref="InterPro:IPR007842" /db_xref="GeneID:7260878" /translation="MDNKVEYWFSIADYDFETAKAMLETKRYLYVGFMCHQTIEKALK AIIARDCADGELPPKTHDLTKLSIRAKLIDIMSDEQQDFIEELNPLNIEARYPEYKER IAQTLDSEVGQTLIKRTEGLLCWIKEQL" gene 4098958..4099269 /locus_tag="Dhaf_3858" /db_xref="GeneID:7260879" CDS 4098958..4099269 /locus_tag="Dhaf_3858" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_1696 DNA polymerase beta subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002460310.1" /db_xref="GI:219669875" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7260879" /translation="MLDKGTVINTVTQYADAVTKEFSPAAIVLFGSYAKGEAHDESDI DVAVIFNGFSGDWLKASSLLWRLRRGISYDIEPHLLDTTDDKSGLVQHVFKTGQIIYQ S" gene complement(4099558..4100223) /locus_tag="Dhaf_3859" /db_xref="GeneID:7260880" CDS complement(4099558..4100223) /locus_tag="Dhaf_3859" /inference="similar to AA sequence:KEGG:CLK_1999" /note="KEGG: cbl:CLK_1999 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460311.1" /db_xref="GI:219669876" /db_xref="GeneID:7260880" /translation="MSKGALILLTRIAVPGRVKTRLMPLLSGAECAALQKAMTLDTAY ALATLERELFIFYSDEGPVELLDELPEKARLYPQKGRGLGARMYNALDTVLTLGYKDC LLLGSDLPLLDPGEVAKAGRILEEKDIVFCPSTDGGYWLVGMHTPFRPVFQGQRYSTG SVLADALACCAAHGLRPGLGPVRRDLDTPEDLAWLLAVKAANPQLRGRVMDWLQTWQG SRG" gene complement(4100216..4100899) /locus_tag="Dhaf_3860" /db_xref="GeneID:7260881" CDS complement(4100216..4100899) /locus_tag="Dhaf_3860" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: cbf:CLI_2678 glycosyl transferase, group 2 family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_002460312.1" /db_xref="GI:219669877" /db_xref="InterPro:IPR001173" /db_xref="GeneID:7260881" /translation="MISVIIPVYNEEQTLATFLPSLDSLAGEHEVLFSDGGSTDGTLE LLTGHRVITGAKGRAAQCNRAGAEARGDVLFFLHCDSIVPADALFHIRAAVDRGARWG CLTLRFDNTGLLYRLGGHMSNLRVRWGHIAFGDQGIFVTRALFEQVGGFPELPIMEDY EFSLGLKRMKVFPVQVKSRIITSSRRFQAGGIFRVTWSMQRLRAMYRRGVDIETISRE YRDVRRGNE" gene complement(4100896..4101879) /locus_tag="Dhaf_3861" /db_xref="GeneID:7260882" CDS complement(4100896..4101879) /locus_tag="Dhaf_3861" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: cbf:CLI_2048 radical SAM domain-containing protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002460313.1" /db_xref="GI:219669878" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7260882" /translation="MGDARLERLDGIPAFETKFGDQALMDTAERLSVLQINVGKRCNL ACKHCHVEAGPNRTEEMSREVMEACLRLLEENPFATVDITGGAPELNPHFRWLVGECA KGCAHVIVRTNLVILLEEGYTDLPEFYRDHRVNVVCSLPHYTAKNTDRMRGEQVFRRS IEAMKRLNEVGYGQEPELVLDLVYNPGGAFLPPSQTAMEAEYKEHLLREYGVSFSHLF TITNNPIGRFGAFLERSGNLEDYMYRLYGAFNASTLESMMCRFQVSVGWDGRLYNCDF NQAADLPMADGATIFDWTGKPMAKQRIRFGKHCYACTAGQGSSCGGATEGV" gene complement(4101883..4102215) /locus_tag="Dhaf_3862" /db_xref="GeneID:7260883" CDS complement(4101883..4102215) /locus_tag="Dhaf_3862" /inference="protein motif:TFAM:TIGR00778" /note="TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: cbf:CLI_2047 4-carboxymuconolactone decarboxylase" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase like protein, AhpD family" /protein_id="YP_002460314.1" /db_xref="GI:219669879" /db_xref="InterPro:IPR003779" /db_xref="InterPro:IPR004675" /db_xref="GeneID:7260883" /translation="MATYYEAKDLEKFATMGECASELWEKFMGYYGAVFAEGNLTARE KSLIALAVATAVQCPYCIDSYTQDCLSKGVTEEQMTEAIHVACAIRGGASLVHGVQMK NIVKKLEL" gene complement(4102230..4102979) /locus_tag="Dhaf_3863" /db_xref="GeneID:7260884" CDS complement(4102230..4102979) /locus_tag="Dhaf_3863" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: fma:FMG_0304 iron-sulfur binding reductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460315.1" /db_xref="GI:219669880" /db_xref="GeneID:7260884" /translation="MKTRQLITLLEKSHYPFRNYPKVSCATLLFPGCSFPSQFPKTMD ALAELCREHGVGVAYDCCGKPVAELKGERHTVRIGEKMTERLERLGVGEVVCLCPNCL EYLGETLAFPVISIYALLSRWGYTSQSPPPSGVVFRPCPDREAGRLLEEIGELVSLAG LRTMERVPCCGLRGDIAAHGPAAADKLCALVKEEGAGETIYTYCASCSGQFQRQGCGQ VRHLLSSLLGVEEEPDAAHALFNRARRKFAK" gene complement(4102976..4103638) /locus_tag="Dhaf_3864" /db_xref="GeneID:7260885" CDS complement(4102976..4103638) /locus_tag="Dhaf_3864" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_1407 hypothetical protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002460316.1" /db_xref="GI:219669881" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7260885" /translation="MNNRKPWLFLGLAVLVLIGNLIFGWSDDLANQETLPLMRRALED NFALALLLYGVLTVAGCVLLALPGVTFAIVAGVLFGPVWGTLACWLAVTLGACLSFLA GRYFLKDTLKPQLEKNSYLNRLLFAGAGQRDVFLLAITRLVPLFPYNLQNFAYGITDI RFLPYALYSALFMLPGTAAYTVGAAGVASPERRGPYLIVAGVLLAVVLTLSFILKKGV KE" sig_peptide complement(4102976..4103050) /locus_tag="Dhaf_3864" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.919) with cleavage site probability 0.625 at residue 25" gene complement(4103628..4104341) /locus_tag="Dhaf_3865" /db_xref="GeneID:7260886" CDS complement(4103628..4104341) /locus_tag="Dhaf_3865" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: cpr:CPR_0543 DedA family protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein" /protein_id="YP_002460317.1" /db_xref="GI:219669882" /db_xref="InterPro:IPR015414" /db_xref="GeneID:7260886" /translation="MNEQRWSKKYRKWTVWAVTILAVIICLIVPPLRSGLGSVFTLLS SMDVSQVVEYIRSFGPWAVVVSFCLMLLQSVAAPLPAFLITFANAMIFGWWQGAILSW SSAMAGAAICFWLARLLGRDTVEKLASKTALSSVDVFFRQYGKHTILICRLLPFVSFD LVSYAAGLTGMSFGGFFLATGIGQLPATLVYSYVGGMLTGGARLFVTALLILFALTVL IYLFRKIYQERKREATDEQ" sig_peptide complement(4103628..4103732) /locus_tag="Dhaf_3865" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.673) with cleavage site probability 0.537 at residue 35" gene complement(4104547..4105047) /locus_tag="Dhaf_3866" /db_xref="GeneID:7260887" CDS complement(4104547..4105047) /locus_tag="Dhaf_3866" /inference="protein motif:PFAM:PF00581" /note="PFAM: Rhodanese domain protein; KEGG: cbb:CLD_2814 putative lipoprotein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_002460318.1" /db_xref="GI:219669883" /db_xref="InterPro:IPR001307" /db_xref="InterPro:IPR001763" /db_xref="GeneID:7260887" /translation="MRKLLSLTMCLLLSVSVLAGCTQATPASGGSAAPAADRAEADIS WQYKTADETKAMLDAQESVIILDSRPDDMYTKGHIPGAYHVPSYPMDTPELEQVLKDA VPNLQGDDPIVIVCKSGNKGAKRAISFLQDQGVAPERLFILEGGGDGWKIPEYTTTAN DSTIPN" sig_peptide complement(4104547..4104621) /locus_tag="Dhaf_3866" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.500 at residue 25" gene 4105332..4106939 /locus_tag="Dhaf_3867" /db_xref="GeneID:7260888" CDS 4105332..4106939 /locus_tag="Dhaf_3867" /EC_number="2.3.2.2" /inference="protein motif:PRIAM:2.3.2.2" /note="PFAM: gamma-glutamyltranspeptidase; KEGG: sth:STH3166 gamma-glutamyltranspeptidase" /codon_start=1 /transl_table=11 /product="Gamma-glutamyltransferase" /protein_id="YP_002460319.1" /db_xref="GI:219669884" /db_xref="InterPro:IPR000101" /db_xref="GeneID:7260888" /translation="MLYDPLYHPYPSKRSLSFASRGMVATSQGLAAQAGLDILKKGGN AIDAAIATAACLTVVEPTSNGMGGDAFALVWTKGRLHGLNASGTAPASLSGHDLIKAG HQEMPQYGWIPVTVPGAPAAWAALSERFGRLPLTEVLKPAIDYAEQGYPVSPVLGQNW QIAYTKYAQELKGEEYESWFKTFAPQGRAPFIGEIWRSPDHARSLAQIAASKAQAFYK GDLADRIDAFSQKYGGYLRKRDLEDYQPLWVDPIHLHYRGYDVWEIPPNGHGLVALMA LNILKGFQFSAKDSIETYHKQIEAIKLAYVDGRKYIADPRSMEVKISDLLSEGYALER RKLIGQTALLPEPGTPPKGGTVYLAAADDEGNMVSMIQSNYMDFGSGLVVPGTGISLH NRGNNFSLDPHHANFLEPKKRPYHTIIPGFLTKDGNTVGPFGVMGGFMQPQGHVQVLM NAIDFHLNPQAALDAPRFLWVQDRHVQVERSLPSHIGDGLSRMGHEIEWSANTGLFGR GQIIWRNDKDVLVGATEPRTDGVVAAW" gene complement(4107049..4108413) /locus_tag="Dhaf_3868" /db_xref="GeneID:7260889" CDS complement(4107049..4108413) /locus_tag="Dhaf_3868" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2846 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002460320.1" /db_xref="GI:219669885" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260889" /translation="MKSMLRILGRYVGSAAGIALILLILNAALFLLWVTGAKQENGNS YRVSVIADGLAKEGEEYTLADSARQAMSVRYEWAMLLSDSGEILWSLNLPRELSRTYT IPEVASFTKWYLQDYPVYVWRHQDGLLVVGCPKGSVWKTGMEMPQSIMDKTILWIPIV LAANGLAAVLLALLLGLRLFRSMHTLVKGIEQMAAKQPVQLGTNGVLGELAAALNQTS RELQRQEIALQKREQARTSWIAGISHDIRTPLSMVMGYASQLEDNQELPRPAREQAGI VRQQSQRIKTLVNDLNLASKLEYDMQPLHQEEVLLAPLLRQIAADFLNGGLARPYSLE LDVGESARQAKVLGDQELLRRAVYNLIQNSIRHNPQGCAIRITLERVNSCWVMAVADN GKGFDQELLDRLKEENSLTGMPSHGLGLTLVRQIARVHEGTTEFENLPEGGCRVVINL PPSS" sig_peptide complement(4107049..4107132) /locus_tag="Dhaf_3868" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.954) with cleavage site probability 0.769 at residue 28" gene complement(4108410..4109129) /locus_tag="Dhaf_3869" /db_xref="GeneID:7260890" CDS complement(4108410..4109129) /locus_tag="Dhaf_3869" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2845 two component transcriptional regulator, winged helix family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002460321.1" /db_xref="GI:219669886" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7260890" /translation="MNTIFDCKLLLVDDEPDLRGMLVEILHKEGFQRVRTAASCQQAK ELFQTEQPQVVILDVSLPDGDGFSLMSEFRSISAVPVLFLSARDEDENRLLGLGLGAD DYITKPFLPRELLLRLKAVLTRTYFPPTLRQSKKPLFRLGEAVVDLNSALVTRPQGQV TLTAKEYILLAKLYENRGSIVTGDSLCRAVWGDDLYGYENTLMVHIRRLREKIEPEPS SPRYLLTVRGLGYKLTGVVEK" gene 4109276..4110190 /locus_tag="Dhaf_3870" /db_xref="GeneID:7260891" CDS 4109276..4110190 /locus_tag="Dhaf_3870" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2844 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460322.1" /db_xref="GI:219669887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260891" /translation="MADIIKTQGLCKHYGKTPGVSDLDLSVAEGAVYGFLGPNGAGKS TTLKMILGLVKPTAGSITVFGKTMNHRSRMSILKDVGSLIESPSYYGHLSGYENLRII ATLKGTPEKDIGRVLEIVRLENQKNKKTNQYSLGMKQRLGLACALLGNPRLLILDEPT NGLDPAGIQEMRELIRSLPKEYGITVLVSSHLLSEIEQMATNLGIISKGRLVFQSSLG ALHQKSSPSIAIRTLDNHRAAAVLREQGIAVQCQQDYLLLPAFADGELSRLTLNLFEQ KVGVVRIEQREKSLEDIFLELTGSAVSL" gene 4110187..4110939 /locus_tag="Dhaf_3871" /db_xref="GeneID:7260892" CDS 4110187..4110939 /locus_tag="Dhaf_3871" /inference="similar to AA sequence:KEGG:Cbei_2843" /note="KEGG: cbe:Cbei_2843 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460323.1" /db_xref="GI:219669888" /db_xref="GeneID:7260892" /translation="MRKALSVEFRKTRHRKIWLIVAALLGFQLLWFFWGLKHMDAGKL QQGWLLCLYQFPVLNAIILPVVTAVVASRLSDVEHKGQTFRLLNTVMPAGKLFDAKFL CGAFYILAIVILQVMAMLLAGYAKGFTESPPLPQLGYYLLFTSWVTLTLLLIQHIVSL LSTNQMIPLSLGLLGGFAGLFIMYLPPQFARLIPWGYYGVLMQVGMNWDRETRVTDFY WTDIDWPGFLIITAAFLLFYSGGRALFRRKEV" gene 4110942..4111676 /locus_tag="Dhaf_3872" /db_xref="GeneID:7260893" CDS 4110942..4111676 /locus_tag="Dhaf_3872" /inference="similar to AA sequence:KEGG:Cbei_2842" /note="KEGG: cbe:Cbei_2842 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460324.1" /db_xref="GI:219669889" /db_xref="GeneID:7260893" /translation="MFGRALRAEGMKLRHSPVWLAFILLPILPALIGTFNYLLNIGIL QDGWYSLWTQHTLFSCYFFLPAIIGVYCSYLYRLEHLNHNWNSVMTMPIPVSCFFLAK LCIASAMVIFTQVWTGALYLLSGKLAGLSSPVPGQFPEWLLTGAAAAIAICAVQLCLS LMIRSFAVPVGLALMGGIAGLGMLAKGYGVFFPYSLLSLGMRANQPGGPMQCDLGHFL LSCALYVLACVLWAVLWMKRRDVHTG" gene complement(4111815..4112027) /locus_tag="Dhaf_3873" /db_xref="GeneID:7260894" CDS complement(4111815..4112027) /locus_tag="Dhaf_3873" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460325.1" /db_xref="GI:219669890" /db_xref="GeneID:7260894" /translation="MSAVSKQIIDMIDMLPESEQKLAFEMIKRMVLAWDSDFTKLTPS ERARLTEAEKEIANNETVSHSDIDWN" gene complement(4112042..4112302) /locus_tag="Dhaf_3874" /db_xref="GeneID:7260895" CDS complement(4112042..4112302) /locus_tag="Dhaf_3874" /inference="protein motif:PFAM:PF05016" /note="PFAM: plasmid stabilization system; KEGG: gka:GK3104 hypothetical protein" /codon_start=1 /transl_table=11 /product="plasmid stabilization system" /protein_id="YP_002460326.1" /db_xref="GI:219669891" /db_xref="InterPro:IPR007712" /db_xref="GeneID:7260895" /translation="MEIVYSRVAFKAINSLDKSTKLRVKAGIEGLLEVPPKGDIKQMQ GLNPPTFRLRIGRYRILYEYISLNNKEVLMIKDIGSRGDIYK" gene 4112603..4112872 /locus_tag="Dhaf_3875" /db_xref="GeneID:7260896" CDS 4112603..4112872 /locus_tag="Dhaf_3875" /inference="protein motif:TFAM:TIGR01552" /note="TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: drm:Dred_2468 prevent-host-death family protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_002460327.1" /db_xref="GI:219669892" /db_xref="InterPro:IPR003756" /db_xref="InterPro:IPR006442" /db_xref="GeneID:7260896" /translation="MIIKPTSSLRTELGEITKICKEKAEPVYLTKNGEGELVIMSIAA YEHREAMLDLRTKLLEAEKQRLNGAPSYTSDEVREYIRSLHNDQV" gene 4112859..4113167 /locus_tag="Dhaf_3876" /db_xref="GeneID:7260897" CDS 4112859..4113167 /locus_tag="Dhaf_3876" /inference="protein motif:TFAM:TIGR02385" /note="TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: swo:Swol_1411 hypothetical protein" /codon_start=1 /transl_table=11 /product="addiction module toxin, RelE/StbE family" /protein_id="YP_002460328.1" /db_xref="GI:219669893" /db_xref="InterPro:IPR007712" /db_xref="InterPro:IPR012753" /db_xref="GeneID:7260897" /translation="MIKYKVTLLQVARDDIGEIFIYIGADNPESALGISEKIIEKIDL LAEFPYAGKIVPDSALAKQEYRMLIVSNYIVFYKVIDNEVIVYRVLHGMRDCPGLFNE" gene 4113160..4113354 /locus_tag="Dhaf_3877" /db_xref="GeneID:7260898" CDS 4113160..4113354 /locus_tag="Dhaf_3877" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460329.1" /db_xref="GI:219669894" /db_xref="GeneID:7260898" /translation="MNSRNFPMGKLPLKFNKDQRTLAPRLMSGQGSLLPSAIIDAKLP HRAAALKMAKVTMGFTFEVR" gene complement(4113265..4113975) /locus_tag="Dhaf_3878" /db_xref="GeneID:7260899" CDS complement(4113265..4113975) /locus_tag="Dhaf_3878" /inference="protein motif:PFAM:PF02965" /note="PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: bfs:BF2902 hypothetical protein" /codon_start=1 /transl_table=11 /product="Vitamin B12 dependent methionine synthase activation region" /protein_id="YP_002460330.1" /db_xref="GI:219669895" /db_xref="InterPro:IPR004223" /db_xref="GeneID:7260899" /translation="MAEAGTLAVLVPEITIEELFTAQGADLSRRSPRQDMVDLNIKLL AEARELAKVSIIWQEVKVLGSQQQELYLEGGLTLRGSLLPKVLGPAESAVLFAMTIGE GIDERVKEYTHQGKTLEAFILDAAGSAILAKAAYHAISELAGLYKEKQLDTTFSLGPG HSYWKGLEDVRTIIDYLKGEQIGISLTDSNLMLPKKSIAMVMGVGSNLPDFKGKTHCD FCHLKGSCTMRELGVNNC" gene complement(4113990..4115840) /locus_tag="Dhaf_3879" /db_xref="GeneID:7260900" CDS complement(4113990..4115840) /locus_tag="Dhaf_3879" /inference="protein motif:PFAM:PF00111" /note="PFAM: ferredoxin; KEGG: amt:Amet_2099 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_002460331.1" /db_xref="GI:219669896" /db_xref="InterPro:IPR001041" /db_xref="GeneID:7260900" /translation="MKEVRIVFQPGEISVPVIAGTTIMEAMNRSGLGEDFPCGGRGKC GKCRVKVREGLEDFTAIDEDHLTAQELAEGIRLACATKINRDMMVEMQSPKKLQHHIL IDSAERAFHIQPHLLKVFAEIAQPSLSEHKSDWQRLQESLAGLGSSVHDLQAPLSVLR RLPDTLRESANRVTTVVYGSQVLGIEQGDTTGTLLGMAFDIGTTTIVGYLLDLNSGRE LEVVSTLNPQAQYGGDVISRITFAGKEEKGLDTLHQAVTGAMNRLIGEAVDKAGVSRN QLYGISVAANTTMHHLFLGITPRTIGMSPYVSAVNQGLVVAPEELGLEINQAGRVFVL PNIAGFVGADTTAVLLAADLEKRDQVTLILDIGTNGEIVLGSQDRMVACSAAAGPAFE GAQITSGMRGAEGAIDHISFDHGLSYTVIGNGRPIGICGSALLDGVAGFVELGMINKR GKFLEPEKLTHPSALKLKDRLIKYEETWAFQLVEAGQTRHGRPILITQNDIRELQLAK GAIAAGVKILQEAMGIECDDIKEVLLAGAFGNYLNPHSACVIGLIPRELESRIKTIGN AAGNGAKIALLSAQEFSRAKDLAGEVSFVELGSYPGFNTIFAQNTYFKLD" gene complement(4115922..4116641) /locus_tag="Dhaf_3880" /db_xref="GeneID:7260901" CDS complement(4115922..4116641) /locus_tag="Dhaf_3880" /inference="protein motif:PFAM:PF07702" /note="PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: amt:Amet_2098 GntR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_002460332.1" /db_xref="GI:219669897" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:7260901" /translation="MFGMDEKMINPVYLQIVEELKRKINSGSLKPGDAVASESALSRE YGASRMTVRKGLAILAKDGYIYSIPGKGSFVQKPELNKYTIYYDEMKNSINTVDRSRL LEVNIIMPDEKLAGELQITRNKNVIVIRRLFFTEGKPIAYDLKYLPYSKGMPIVEEEL EQATFPEMVSGSVSSFSLKKELTIYAQPPDEEIRRHLKIHDDLALLVIEQRIHNEENK PIGFCVTYFRGDYIKLKGRSE" gene complement(4116617..4117267) /locus_tag="Dhaf_3881" /db_xref="GeneID:7260902" CDS complement(4116617..4117267) /locus_tag="Dhaf_3881" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2097 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002460333.1" /db_xref="GI:219669898" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7260902" /translation="MKDFGTTEELLINYVEQLEETKVFELANHALDQGMNPLDLVNLI IEGMSRVGKRYEAKEYYIADLIMAGIIFRGVLELKPMTSYFSSHHKKKSGKVLLGTVK DDIHDIGKEIFRALLETHGFEVLDLGVDVSGETFVKKTREFKPDIIGLSGVLTSTIDQ MKQVIDILAAAGLKDQVRIIAGANYLNADGCSYIGADAFATDASKGIEICLEWMKR" gene complement(4117393..4118091) /locus_tag="Dhaf_3882" /db_xref="GeneID:7260903" CDS complement(4117393..4118091) /locus_tag="Dhaf_3882" /inference="protein motif:PFAM:PF07796" /note="PFAM: Protein of unknown function DUF1638; KEGG: amt:Amet_2101 hypothetical protein" /codon_start=1 /transl_table=11 /product="Protein of unknown function DUF1638" /protein_id="YP_002460334.1" /db_xref="GI:219669899" /db_xref="InterPro:IPR012437" /db_xref="GeneID:7260903" /translation="MVKESAGGTVLIACKMLQHELNKAIAENGCPYPIIWIDSEYHTD PNGLRAKLQEEIDRLEEVKTILLAYGCCGNGTVGLKATTGDLIIPRTEDCISMLMSRQ GQTYLRPKATFFMTKGWLEGTHSMAREIEHAVKRYGPERAKKIFEQMFRHYKHLMLID TKSYSIEECLAEVELLAQSLNLELTFAEGDVWFLRKLLSGSFAQDFSITPRGETVSQQ DFACCDQDLPRQPY" gene complement(4118105..4118911) /locus_tag="Dhaf_3883" /db_xref="GeneID:7260904" CDS complement(4118105..4118911) /locus_tag="Dhaf_3883" /inference="protein motif:PFAM:PF00809" /note="catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein" /codon_start=1 /transl_table=11 /product="methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase" /protein_id="YP_002460335.1" /db_xref="GI:219669900" /db_xref="InterPro:IPR000489" /db_xref="GeneID:7260904" /translation="MIIIGEKINGTIPSVKQAIAERNEEFIRNLALKQTEAGAHFLDV CASTAPEYEVETLIWLMNIVQDTVDTPLCIDSPNAAVIKEVFKHARRPGLINSVSEEG DKCEIIFPLLEGTEWQVIALTCDNKGIPSDTETRVEITKRIVEKAQKHGITPDRIHLD PLVLALSADNKSLLNFTETLKLVKELYPTIKVTSGLSNISFGMPLRKVVNQGFLTIAL YAGMDSAILDPTNRDMMATLMATEALLGRDRLCRNFANAFRKNKIGPIKE" gene complement(4118986..4119129) /locus_tag="Dhaf_3884" /db_xref="GeneID:7260905" CDS complement(4118986..4119129) /locus_tag="Dhaf_3884" /inference="similar to AA sequence:KEGG:Amet_2096" /note="KEGG: amt:Amet_2096 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460336.1" /db_xref="GI:219669901" /db_xref="GeneID:7260905" /translation="MNTDYYKTWEEYLAAHPEIDEQEAQVMAPKMQSYEDMMFSFIMF LCA" gene complement(4119143..4120288) /locus_tag="Dhaf_3885" /db_xref="GeneID:7260906" CDS complement(4119143..4120288) /locus_tag="Dhaf_3885" /inference="similar to AA sequence:KEGG:Amet_2095" /note="KEGG: amt:Amet_2095 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460337.1" /db_xref="GI:219669902" /db_xref="GeneID:7260906" /translation="MSDKMAERTQLFTDLIDGKIPKRVPIMSMFTHEFAIQYAGMDLK KVQWDTTDLEACFEKVCEDFYSDLLPVSAFRMPSFYKILGSRNFVMGSNGFLQHPEVE GLKVEEYDDFIASPYNCIVEKVLPNLYSELNADPVTRSIVMAKAFKAYTDENNNLFRI YGNLIGKYGYGTVSFFAAFCEAPFDILTDQLRGFKNISMDVRRIPDKVEAAVDAVTPL MIKMGTQPFPNKYNATFIPLHMAPYLRGKDFDRFYWPSFKKLVEGLAEKGMRSYLFVE EDWMRYIDYLAELPAGTVMTFEYGDPKLVKEKLGKKHIIGGFYPLTLLKTGTKQECID KAKELNDILAPGGGYYFSFDKAIITADSVNIDNTRAVLDYVANNANY" gene complement(4120281..4120928) /locus_tag="Dhaf_3886" /db_xref="GeneID:7260907" CDS complement(4120281..4120928) /locus_tag="Dhaf_3886" /inference="protein motif:PFAM:PF02310" /note="PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: amt:Amet_2093 cobalamin B12-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_002460338.1" /db_xref="GI:219669903" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR006158" /db_xref="GeneID:7260907" /translation="MLDLNALTQAIGDLDEGQVVSLLEEFVASKPSMAEANQVVAACQ KGMSIVGDFYEKKEYYVGDLIFAGELLSEAFDLLKPVIGGDSNSKVGSIVVGTVQGDM HHTGKNIFASMVEAAGFVVHDLGIDVEPGVFVDKVKEVKAEILGMSGVLTLAIDSMKA TVDALAAAGLRDQVKVIIGGNPVTEEACKQIGADMFTTNAAEGVKICQRWVEQHV" gene complement(4121157..4121969) /locus_tag="Dhaf_3887" /db_xref="GeneID:7260908" CDS complement(4121157..4121969) /locus_tag="Dhaf_3887" /inference="protein motif:PFAM:PF02361" /note="PFAM: cobalt transport protein; KEGG: lrf:LAR_1364 cobalt ABC transporter permease component" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_002460339.1" /db_xref="GI:219669904" /db_xref="InterPro:IPR003339" /db_xref="GeneID:7260908" /translation="MFIDYLPGDSLLHRLHIRTKICGFLVAVIWGFLFQNPLYNLSCL LGILILALQSKIPVQKVWQMIRPLMPICLFLLLFTGITYPQERFQSEISQVILFSAAN EGRLALSVGGFLTGINYICRLLIMVLGSSLLTLTTPLDEFMEFLNRLRVPAEITFMIT TALRFIPTLDKKRLLIIEAQRARGVRINDQSSIGRLKTYLAIMVPLFVNAILIAEDLA KGMLNRGYGYSSSITPSHEHPSTAMDYWILGALLLCLGGGLYLRVGLNLGVL" gene complement(4121960..4123741) /locus_tag="Dhaf_3888" /db_xref="GeneID:7260909" CDS complement(4121960..4123741) /locus_tag="Dhaf_3888" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0225 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460340.1" /db_xref="GI:219669905" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260909" /translation="METVIELRDVSYRYPRAEEESLKQVSLAVAKGKFIALMGPTGAG KTTLSLCLNGLIPQFLQGELQGEVRIGGEETREVRVQDLAKQVGLVLQDAESQIVGRT VGEDVAFGPRNFGVPLQEIHRRVAQALAKVRLNGYDQRSTAELSGGEKQRLVIAGVLA LEPELLVMDEPASELDPEGRFQVYRTLDDLCREKERTILVVEHSSEEILHRAHEVIVL KHGKVAWQGIPEQLFRNIPLLQEFGIKPLPVSLLGWSFWQRGWIEGQDIPLDVAEAES LIRNLIGRPSLQNRVVPPSEPPARGKVHQEKEAEKSSLNSALIQITQLVHRFESGQIG VQGIDLTIEKGEFVALAGSNGAGKTTLAKHINGLLKPTEGEVIVKGLNTKDVDTAQLA KTVGYVFQNPDHQIFSVSVEKELEFGLKNAGFTRTEIAERITQALALTGLENYRQVHP YTLSKGERQFIAVASVLALTPEILVIDEPTTGLDWVGVEKIMKLLQQLHRKGTTILMI SHDMDSVADYAERVIILREGQVMIDAPPWEAFADESMLRQAAVLPPQLCVLNQRLQDL GYSAQSAEEFRQALFQLIEEGERKPCL" gene complement(4123754..4124266) /locus_tag="Dhaf_3889" /db_xref="GeneID:7260910" CDS complement(4123754..4124266) /locus_tag="Dhaf_3889" /inference="similar to AA sequence:KEGG:HM1_1580" /note="KEGG: hmo:HM1_1580 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460341.1" /db_xref="GI:219669906" /db_xref="GeneID:7260910" /translation="MIEPAKKTTIPKSAQNIRRIAIMAVFLALSAVGALIKIPSPLGT VALDSAPGFFSALAFGSIEGCIVIAIGHLLTSAVVGFPLGIPMHLVIAIEMAVFALIY RLVNKKIGLIPAVIITSLLNGVVAAFSVFPIGGMGAVLGLMPFLLLGSVLNVAVSALA YKALKGSRLI" sig_peptide complement(4123754..4123855) /locus_tag="Dhaf_3889" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.921) with cleavage site probability 0.683 at residue 34" gene complement(4124353..4125126) /locus_tag="Dhaf_3890" /db_xref="GeneID:7260911" CDS complement(4124353..4125126) /locus_tag="Dhaf_3890" /inference="similar to AA sequence:KEGG:HM1_1579" /note="KEGG: hmo:HM1_1579 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460342.1" /db_xref="GI:219669907" /db_xref="GeneID:7260911" /translation="MGYQGRDVEVVALNDAQYLVAACDSCGAIGEKELDAVKVPWRVT GRMTARVALLEVLAVGAVPQMLSIAIANEPLPAGEEIMKGVREELKAMNLLSLPAAVS TEKNMPTEQTGLGITVIGLCDQDKLRIGRARPGNSLFCLGLPKVGTEAADPEDPDILQ GIHLIQLLNIPGVYDIIPVGSQGIRGEAEALAQAVGARFGEDSQCRLDINKSAGPSTC LIFTAAEDIELGDFGKLPIHKIGRLEEDGGGGLLTENED" misc_binding complement(4125233..4125415) /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 114.65" /bound_moiety="adenosylcobalamin" gene complement(4125583..4126773) /locus_tag="Dhaf_3891" /db_xref="GeneID:7260912" CDS complement(4125583..4126773) /locus_tag="Dhaf_3891" /EC_number="2.5.1.6" /inference="protein motif:PRIAM:2.5.1.6" /note="catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="YP_002460343.1" /db_xref="GI:219669908" /db_xref="InterPro:IPR002133" /db_xref="GeneID:7260912" /translation="MAKKLFTSESVTEGHPDKICDQISDAILDAIFAKDPNARVACET SVTTGLVLVSGEITTNCYVDIPSTVRQTIREIGYTRAKYGFDADTCAVLTSIGEQSAD IALGVDRALEAKNGEMSEEEIEAIGAGDQGMMFGYATNETESYMPLAIDLAHRLARRL SEVRKSDILDYLRPDGKTQVTVEYEDNRPVRIDTIVISTQHHPEATQERIRRDLLEHV VFPVVPSELLDESTRYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGMARHGGGAFSG KDPTKVDRSAAYAARYVAKNVVAAGLAERCEIQLAYAIGVAQPVSVLVETFGTAKIDE EKIGELVKNNFDLRPAGIIKTLNLRRPIYRQTAAYGHFGRTDLDLPWEKTDKAAALRE QAGL" gene complement(4126779..4127981) /locus_tag="Dhaf_3892" /db_xref="GeneID:7260913" CDS complement(4126779..4127981) /locus_tag="Dhaf_3892" /EC_number="4.1.1.36" /EC_number="6.3.2.5" /inference="protein motif:TFAM:TIGR00521" /note="KEGG: cth:Cthe_1313 phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein" /codon_start=1 /transl_table=11 /product="phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase" /protein_id="YP_002460344.1" /db_xref="GI:219669909" /db_xref="InterPro:IPR003382" /db_xref="InterPro:IPR005252" /db_xref="InterPro:IPR007085" /db_xref="GeneID:7260913" /translation="MLRGKKLLIGVTGGIAAYKAADVVSRLRKQGAIVYVAMTKGATE FIAPLTLRTLSANPVYVDMFEEPKVWNVEHIALAEAVDAVLVAPATANLLAKMTVGLA DDFLSTVLLATQAPIFVAPAMNHHMYHHPATQENLKRLRERSVRILGPAAGFQACGTD GDGRMSEPQELVEALQSFFAASGVLAGKKALVTAGGTQEPLDPVRYLGNRSSGRMGFA VAEALREAGAETILVSAPNELPTPPGVRRINIMTAQEMHAAVMGEFARMDIVVKAAAV ADYRPAVSAEQKIKKAGTNLALELVPNPDILAECGRKKENQFLVGFAAETENLYEHAQ AKMQRKNVDMLVANDVTQPGAGFGSPTNIVSLLFPDGKKIDLPQMNKLDVARRLVQEI AERLSEKE" gene complement(4127981..4128187) /locus_tag="Dhaf_3893" /db_xref="GeneID:7260914" CDS complement(4127981..4128187) /locus_tag="Dhaf_3893" /inference="protein motif:TFAM:TIGR00690" /note="TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: hmo:HM1_2128 DNA-directed RNA polymerase, omega subunit" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, omega subunit" /protein_id="YP_002460345.1" /db_xref="GI:219669910" /db_xref="InterPro:IPR003716" /db_xref="InterPro:IPR006110" /db_xref="GeneID:7260914" /translation="MKQPSLDILLSKVDSKYTLVLAAAKRARTLMEDPEFEVNYRGSK PVSLAFDEIAKGKYHFELTREGIK" gene complement(4128190..4128792) /gene="gmk" /locus_tag="Dhaf_3894" /db_xref="GeneID:7260915" CDS complement(4128190..4128792) /gene="gmk" /locus_tag="Dhaf_3894" /EC_number="2.7.4.8" /inference="protein motif:PRIAM:2.7.4.8" /note="Essential for recycling GMP and indirectly, cGMP" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="YP_002460346.1" /db_xref="GI:219669911" /db_xref="InterPro:IPR000850" /db_xref="InterPro:IPR008144" /db_xref="InterPro:IPR008145" /db_xref="InterPro:IPR017665" /db_xref="GeneID:7260915" /translation="MEQNHGLLIVLSGPSGAGKGTLCQELLRQLPQVKYSVSATTRQP RPGEVDGLHYYFRSREEFQTMIEQDQLLEWAEFCGNYYGTPQFAVEQAIQAGNDVILE IEIQGALQVKQRFPQGVFIFVVPPSMDELSQRIHKRGTESEEVIQKRLQTAARELEYV SEYDYVVVNDEIPLAVDKLKSILLAEKCRVKRKPYVFQGV" gene complement(4128806..4129081) /locus_tag="Dhaf_3895" /db_xref="GeneID:7260916" CDS complement(4128806..4129081) /locus_tag="Dhaf_3895" /inference="protein motif:PFAM:PF04025" /note="PFAM: protein of unknown function DUF370; KEGG: mta:Moth_0891 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460347.1" /db_xref="GI:219669912" /db_xref="InterPro:IPR007169" /db_xref="GeneID:7260916" /translation="MDIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDAGMLI DATYGRRTRAVIICDSHHVILSAVQPETVAHRLSAKEASNTAEDPAD" gene complement(4129097..4129966) /locus_tag="Dhaf_3896" /db_xref="GeneID:7260917" CDS complement(4129097..4129966) /locus_tag="Dhaf_3896" /inference="protein motif:PFAM:PF08340" /note="PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: hmo:HM1_2124 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460348.1" /db_xref="GI:219669913" /db_xref="InterPro:IPR005229" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR013527" /db_xref="InterPro:IPR013551" /db_xref="GeneID:7260917" /translation="MTGFGRGEASGYGYQFTIELKAVNHRFFETSVRMPRHLNSLEDR IRKILQSKINRGRIDVYVNVKETEEKKRLVKVDKDLALSYDKTLKELALALNTTYETD IYRLAALPEVFDLEDTDIDLELIWEPLSRAVAEALNGFTAMRQVEGEGLAADLLHRLH TIMLAKDEIAGYTDSIVIDYQTRLQERIEVLLGDKAILDEARLANEVAFFADRASITE ELVRLQSHIDQGREALQSSEPVGRKLDFLVQEMNREINTIGSKANNLSITQHVVQMKS ELEKIREQVQNLE" gene complement(4130400..4134431) /locus_tag="Dhaf_3897" /db_xref="GeneID:7260918" CDS complement(4130400..4134431) /locus_tag="Dhaf_3897" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: amt:Amet_1127 putative CoA-substrate-specific enzyme activase" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002460349.1" /db_xref="GI:219669914" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7260918" /translation="MYSVGIDIGNVSVKVVLLSETQTILYRRYELHGGKALVAAAGIL KEMTEIYPEEHLYGALTGVYGKVLGDEFGQVSDIPALELGLKVLCPQAKSAMEMGSQN ARYLTRLSGHTLPLYGVNESCAGGTGSFFEDQMRRLGLELEDYSPIIEKAQGVPRLSG RCSVFAKTDMIHRQQEGVPVADILLGLCYAAVKNFKATIVKGMPIEKPLALCGGILKN KGVIQGVKDVFGLTDEELIADEDLIFVQAVGAARYALANQLLVPASKLIHAFHRTEAQ VKLGTSLPRLSPLALREGTRTEDPQCQEIAEGTHCVLGIDVGSTSTNLVVADGEGRLL DFQYLRTQGDPQRVVREGLASLGQRLGSRLIIDAVGVTGSGRHLIGEMIGADTIKDEI TAQAKAALKVNPHADTVFEIGGQDSKYISLERGEVSDFQMNKICAAGTGSFIEEQALR LGIPIEEYGGIALKAQSPLDLGERCTVFIESNIGAALANGEEKPDILAGLCHSVIRNY LHKVVGNKPVGQEIVLQGGVCYNPSVVAAFQGIFGDRVQVSPCFSVSGAYGVALLAGE SMGLSPSRFQGFDLSPQNKVKSAQDKAERLEISLSSHHNDFSHHNDFSHHNYFAEAKK MLLGDYTGRIDPKKKTIGVPYVLVVHKFFPMIKGFFESLGFNVLLSDESNEKTIALAQ NYAQAETCYPVKLIYGHMAELAEKGVDYIFLPSILTMKHETSRVHHNYSCVYMQKAPE FVFKTLKLADKGIQLLNPVFNLDYGKPAMAGAMIEIGTSLGKMKPFCVKALAEGAMGV RRYTAQVEKAGRELLDSLPDQEKVIVIMTRNYGISDPVLNMGIPQEFIKRGYKVITLG HLPGHDLDLSHEYENLYWPFGQHIIGGAKIIRNHPNLYAVYLNNHGCGPDTMISHLFR QEMGDKPYLNIEVDEHYSKVGVITRIEAFINTLEHRPAPGEVKRDFLKDLPRREVSLR KTPEQGVPVYFPHLYPYADLLGDTLKRNGYEGHELPPTTVSSLNLGKSKTLAKEYLSF TALLGDVLHKAQDQEKMQVILPATEGGEIDGLYSRVIYDILARENMDHVAIISPTLET LPFQSSLCPQLFISILAGDLILAAPAAAREDLRQRLKSLASLSVEDLLEAAHEVARDL RDLQELQDVQDIQALWDVRALKPEAGKIAVLGEPYVLYNAYLNGELFKEVEKKGKKIA TMPLSEYLCFLWHTRCENKKERGVVAGYISQMERLSAALGENTPFAPSFADLLASADD LIPDFAGANGRYRRGKTMDWQRQGIPCIEVASLYENAQTVLHLLAGEEDGLVLRLGFD ESGVATMKDRLHSFLYYMERKKD" gene complement(4134466..4134807) /locus_tag="Dhaf_3898" /db_xref="GeneID:7260919" CDS complement(4134466..4134807) /locus_tag="Dhaf_3898" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: asu:Asuc_2103 cupin 2 domain-containing protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002460350.1" /db_xref="GI:219669915" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7260919" /translation="MTEKLIKNIEHSAPFKLLDLVAYEPGKVASLTLAQKPGVGLTIL AFAEGEGVSTHAAPGDAMAYIMDGEAEITIDETRYRLKAGEGIVMPAGIPHAVQSITS FKMLLTVVKNS" gene complement(4134810..4135151) /locus_tag="Dhaf_3899" /db_xref="GeneID:7260920" CDS complement(4134810..4135151) /locus_tag="Dhaf_3899" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2980 hypothetical protein" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_002460351.1" /db_xref="GI:219669916" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7260920" /translation="MARLKNLPQERPLPLASLIEARENQVLSMALAQSDRVQISLFSF ADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFK MLQITLIDEER" gene complement(4135173..4135859) /locus_tag="Dhaf_3900" /db_xref="GeneID:7260921" CDS complement(4135173..4135859) /locus_tag="Dhaf_3900" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1128 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460352.1" /db_xref="GI:219669917" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:7260921" /translation="MLQLHEISKSFGTLPVLNKVSFTVEDGEIVALIGPSGCGKSTLL NIIAGIQKPDEGALSGGSDAMAYVFQDDRLLPWRTVWDNIRLVRDKENRSVIQELIDT VGLSGFETYYPAQLSGGMKKRCGIARSFYYESHLLLMDEPFQGLDYCLRREMLHLLLK VWQKHKQGVLFITHEIDDALTIASRIIVLSPRPSEISKEFMLPGQEGRDPGSPELTDI RREIIAAITN" gene complement(4135843..4136610) /locus_tag="Dhaf_3901" /db_xref="GeneID:7260922" CDS complement(4135843..4136610) /locus_tag="Dhaf_3901" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_0438 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002460353.1" /db_xref="GI:219669918" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7260922" /translation="MKNRGLLTKDSGYKLLSFLMVISLWKVLTLHFSPLIVPTMGSVL AEIYRILTSPDLYAMIPLTAGRLLAGLSLGVSLGLVLGILMGNFSQVKGVLSPLVGIM QTVPPVSWVVLALVWFGFNGKPAVFIVILSTLPVITINVCAGFRRIDKNLLEMASLYR FSKVKRLRHVILPSILPYFKSAFQIALGSGWKIAVMAEVLTTSDGIGGMIKLGRLNVE PESIIAWSILVVLLFYLSDFLIGKFLFRKEKNYAATP" gene complement(4136622..4137656) /locus_tag="Dhaf_3902" /db_xref="GeneID:7260923" CDS complement(4136622..4137656) /locus_tag="Dhaf_3902" /inference="similar to AA sequence:KEGG:Dred_0437" /note="KEGG: drm:Dred_0437 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460354.1" /db_xref="GI:219669919" /db_xref="GeneID:7260923" /translation="MKKTLSRTIPILIMFFLMLTLAACGTAQPAQSAGPKNQETQGTQ ETASEPMTIKVGVPTAPPALPVLHMMETKALGENVNIELSIWDEPETLIAMVQDGEHA LFAFPLTVVSKLYNKGLDVRLMNVNTWGVTYFLTSDPDIKEWQDLKGKTVYVPLQSSP PDALTQYFLHEAGLEAGKDLEIIYASTPEIATLLASGKAAYATLIEPQVTRALLANPQ LRIAFSFEEEWQRVNATDTKIPNAGFGTTQKFIDAYPELTAQFQEAYAQSTQWANENP EQMGELAEKYLGLKKELVAKALPSMGLTFQSAQDSKTELKMFYELLWNFEPSMIGGKV ADDGLYYGGK" sig_peptide complement(4136622..4136720) /locus_tag="Dhaf_3902" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 33" gene 4137808..4138485 /locus_tag="Dhaf_3903" /db_xref="GeneID:7260924" CDS 4137808..4138485 /locus_tag="Dhaf_3903" /inference="protein motif:PFAM:PF00027" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_002460355.1" /db_xref="GI:219669920" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:7260924" /translation="MKKIDSVLQSMPLFKNIQPDKYTNVLSCLNGRIQDYAKGEIIYS LQDPLKSAGIVLAGRVNMSMVSVTGTEHYVQQFDPGDIFGEALACQADPMDNGVLQIT AVQKSSILFVCLSHLFMEKALTCPYASQVALNLLKEVVDNNIFLSRKVEILSQKKIRD RIFIYLQSVGRSGNTVNIPFNRQELANFLGVDRSALSRELCLMRDEGMIDFYKNEIIL LRNDLIS" gene complement(4138501..4140023) /locus_tag="Dhaf_3904" /pseudo /db_xref="GeneID:7260925" gene 4140636..4143215 /locus_tag="Dhaf_3905" /db_xref="GeneID:7260926" CDS 4140636..4143215 /locus_tag="Dhaf_3905" /inference="protein motif:PFAM:PF00384" /note="PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mta:Moth_1389 trimethylamine-N-oxide reductase (cytochrome c)" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_002460356.1" /db_xref="GI:219669921" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:7260926" /translation="MASLFDSITHSAMSRRRFIQASAAAAASLSLAGCGNSLTTASAD KMTAQEGKWITAACWHNCGGRCLNKAYVVDGVVVRQKTDDTHPDSPDYFQQRACLRGR AQRNQVFGADRLKYPMKRKHWEPGGGDKSLRGRDEWVRISWDEALDLVAAELKKAKET YGNRSLFACGTEVGRLLNLYGGHITRWGTTSYGAWKFTPGKIGYSFNAGEETINDRID LRGCETIILLGSNPAWSSAGSPSYHFLQMKQAGAKFIGIDPFYNDTYALLEADWIPTR PQTDVALLTSVAYTLITEDDPSTNPLIDWDFLKRCTIGFDGDSMPEGADPKENFKDYV LGTYDGVPKTPEWAAEICGVEPNTIRSLARQFTKTKKVAFLAGWASARNQNVDGLPQM IMTIGAMTGHIGKPGHCTGVSCHAGAGNGGDALVSPGKDGLPGVKNPLDDVFNDAHIW RSIVDGKYVYMGPGGQDPGVERDVDIHVIYHAGRALLQTTDGMNLGIEAHRKVDFVVT HAQFLTTTAKYSDIVLPINTEWERVGGFLTGNREMAIMYSQVTESLYEAKSDQWIVTE LAKRLGFKPEELYPFDEKQQFFNKIAGSKVVTPDGKDFEPLVTITAADIAQWGVQGTP QQGRITLPELQEKGIYQVERYPGDNYGYIACADFVTDPENNPLPSESGKFEIYCRSLA EVINGTGFSKIKPIPTHIPAPDGYESTFKDWGNKVKGDYPYQVLNPHYLRRSHTVFDN VQWLRETWPNPVFINTKDAESKGIMDGDTVLLTSRHGKTLRRACLTERFMPGVIGLPH GAWVDIDEKTGIDTAGADNILCGSVPTGQGVSGWNTCAVNMEKYAGAPLIPDIEKPQR IFF" sig_peptide 4140636..4140755 /locus_tag="Dhaf_3905" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.337 at residue 40" gene 4143233..4143811 /locus_tag="Dhaf_3906" /db_xref="GeneID:7260927" CDS 4143233..4143811 /locus_tag="Dhaf_3906" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ccv:CCV52592_2106 peptidase T" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_002460357.1" /db_xref="GI:219669922" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR017900" /db_xref="GeneID:7260927" /translation="MGQKGFYFDMTACVGCRTCQIACKDKNNLNVGTFFRKVRAYETG VFPQPGIYHYSETCNHCEKPKCAEGCPTTALHKLENGIVDHDKNKCIGCRFCVWNCPY GVPQFIEALGQISKCDMCKDLVEEGANPVCVDACPLRAIHWGELEELKAQYGSGSVRD LAILPDSSITQPSLLVKAKTIALEKDYREKEI" gene complement(4144007..4144858) /locus_tag="Dhaf_3907" /db_xref="GeneID:7260928" CDS complement(4144007..4144858) /locus_tag="Dhaf_3907" /EC_number="5.1.1.7" /inference="protein motif:PRIAM:5.1.1.7" /note="PFAM: diaminopimelate epimerase; KEGG: mta:Moth_0888 diaminopimelate epimerase" /codon_start=1 /transl_table=11 /product="Diaminopimelate epimerase" /protein_id="YP_002460358.1" /db_xref="GI:219669923" /db_xref="InterPro:IPR001653" /db_xref="GeneID:7260928" /translation="MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVG GDGLIMVLPSDKADARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLA GILTLQLSITGDQVTGVRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFTAVS MGNPHCVLFVEDYETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAG PTLACGTGACASVVAAVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGV LLEDALS" gene complement(4144902..4145099) /locus_tag="Dhaf_3908" /db_xref="GeneID:7260929" CDS complement(4144902..4145099) /locus_tag="Dhaf_3908" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460359.1" /db_xref="GI:219669924" /db_xref="GeneID:7260929" /translation="MFEFLIGFVLADNIDTLSYIVVGLLAIFTVSLIIKKVFKLALIF VLITIMAYYLVPDLFASIALP" gene complement(4145301..4145561) /locus_tag="Dhaf_3909" /db_xref="GeneID:7260930" CDS complement(4145301..4145561) /locus_tag="Dhaf_3909" /inference="similar to AA sequence:KEGG:EF2565" /note="KEGG: efa:EF2565 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460360.1" /db_xref="GI:219669925" /db_xref="GeneID:7260930" /translation="MEYIITFKNTNWAIKSEQYLLGEKLQVKVMPLPAQISAGCGICL RIPAAEIETALDILTARQVEGVGLYTRVEQNKGYTYSEIIGR" gene complement(4145564..4146694) /locus_tag="Dhaf_3910" /db_xref="GeneID:7260931" CDS complement(4145564..4146694) /locus_tag="Dhaf_3910" /EC_number="2.8.1.7" /inference="protein motif:PRIAM:2.8.1.7" /note="PFAM: aminotransferase class V; KEGG: cpy:Cphy_1489 cysteine desulfurase family protein" /codon_start=1 /transl_table=11 /product="Cysteine desulfurase" /protein_id="YP_002460361.1" /db_xref="GI:219669926" /db_xref="InterPro:IPR000192" /db_xref="GeneID:7260931" /translation="MIYFDNSATTLIKPPEVGEAVAYAINHFGNASRSFYDAAMTASR EIYRTRAAIAALVGSAEPLNIAFTSSSTESLNLVIGGLVKQEDAVITTVTEHNSVLRP LYLKGCRLDFIDCDENGVLQWDAFEELIRPETRFLICTHGSNVTGNITEVKRLYDLCR AHDLTMILDVSQTMGLIPVSGDMADVLCFTGHKGLFGPQGTGGIIVNRRLPFEIVKTG GAGVHSFAMFQQNEMPDVFEAGTLNSHSLYGLQKGVEFILHTGIEAIHSRENRLTQLF VEGIKEIEGLRLYGDFSGGNRLPVVSLNIEGLPASDLAGLLWEKYGIATRAGSHCAPL LHQRFKTVETGMVRFSFSYFNTEEEIATGSRALKTIAEEYGR" gene complement(4146701..4147495) /locus_tag="Dhaf_3911" /db_xref="GeneID:7260932" CDS complement(4146701..4147495) /locus_tag="Dhaf_3911" /inference="protein motif:TFAM:TIGR00241" /note="TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cbb:CLD_1289 putative CoA-substrate-specific enzyme activase" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_002460362.1" /db_xref="GI:219669927" /db_xref="InterPro:IPR002731" /db_xref="InterPro:IPR008275" /db_xref="GeneID:7260932" /translation="MKKIFVGIDSGSTQCKAVVMSEEGLLDTLAVKTGWNPKTSAEES LAVLKERNDLDSREILVAATGYGREAIDFAEYTMTEITCHAYGGIYLMPDIQGIIDIG GQDSKVIQIQAGKPVNFLMNDKCAAGTGRFLKMACDTLEIPLDQIDEFTDPHQAVSIN SMCTVFAESEIIGLLAMQKDRAQIMAGVLQSIARKIQQQAGKLEFTADKPILMTGGLS QSGLLIDTIAQHIGYEVKSCSQALYAGAIGACLCAAQKSNHSIRGV" gene complement(4147492..4148646) /locus_tag="Dhaf_3912" /db_xref="GeneID:7260933" CDS complement(4147492..4148646) /locus_tag="Dhaf_3912" /inference="protein motif:PFAM:PF06050" /note="PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cbl:CLK_3113 putative R-2-hydroxyglutaryl-CoA dehydratase subunit" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_002460363.1" /db_xref="GI:219669928" /db_xref="InterPro:IPR010327" /db_xref="GeneID:7260933" /translation="MSEIQLPSQFESFAEARKQGFIAVKNLKEQGKKVAGVFCTYAPV ELVLAAGAVPVGLCAFSDETIPEAEKVLPRNLCPLVKSSYGFAITDKCPYMFFSDLMI GETTCDGKKKMYELLGEFKNLHVMQLPQTQQDEASQELWYQEVLRLKDRIEQDFGVTI TEEGIKNAIKVKNEERKLLKEFYELSKSCPPPITGAEQLKVLYGSQFKFDPEAKNREI RETIDKVKADQAKGVENVSPAAKRILITGCPLAGVTEKVVRAIEESGGVVVAYENCIG VKPVERLVDETIDPYKALADRYLQIGCSVMTPNPNRLDLLSRLVREFKVDGVVEMTLQ ACHTYNLETTQIRKHMQKEDMPFISVETDYSTSDAAQLKTRLAAFIEMLS" gene complement(4149011..4149583) /locus_tag="Dhaf_3913" /db_xref="GeneID:7260934" CDS complement(4149011..4149583) /locus_tag="Dhaf_3913" /inference="protein motif:PFAM:PF05685" /note="PFAM: protein of unknown function DUF820; KEGG: tex:Teth514_0292 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF820" /protein_id="YP_002460364.1" /db_xref="GI:219669929" /db_xref="InterPro:IPR008538" /db_xref="GeneID:7260934" /translation="MSIPKANKKHTYADYLTWPGEERWEIIDGTPLLQSAPTWQHQAI SGELFRQFSNYLADKPCHIFGAPFDLRLPLAAEADEDATYVFQPDLTVICDKTGLKGT GYFGVPELVIEVSSISTGKFDKVSKFNAYEKAGVREYWIVEPEQKVVSVFKLQDGRYG RPETYTEEDTIGVGIFPDLAIELKRVFADL" gene 4149906..4150151 /locus_tag="Dhaf_3914" /db_xref="GeneID:7260935" CDS 4149906..4150151 /locus_tag="Dhaf_3914" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: tde:TDE1305 DNA-binding protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002460365.1" /db_xref="GI:219669930" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7260935" /translation="MSKSWDINDKRFIQIGLRIAYYRKLNEMTQDQLAERIGITSKYL SQVETPSCVQPISLKTLFAIADLFHVPPHKFLEFDKD" gene complement(4150399..4153140) /locus_tag="Dhaf_3915" /db_xref="GeneID:7260936" CDS complement(4150399..4153140) /locus_tag="Dhaf_3915" /inference="protein motif:TFAM:TIGR01494" /note="TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: drm:Dred_1692 ATPase, P-type (transporting), HAD superfamily, subfamily IC" /codon_start=1 /transl_table=11 /product="ATPase, P-type (transporting), HAD superfamily, subfamily IC" /protein_id="YP_002460366.1" /db_xref="GI:219669931" /db_xref="InterPro:IPR000695" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR004014" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006068" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR013055" /db_xref="GeneID:7260936" /translation="MRQQAWHVLPWLDVVKALEVHPGKGLNLKEVNRRLGEVGRNILE TKKGVHPVFLFLGQFKDFMVLVLLAATIVSALLGEIADAVTIMAILVLNAVLGFIQEF RAERSIESLKSLTAPEARVLRDGLESRIPAADLVPGDIVLLEAGDRIPADIRWIQAVN VEVEESALTGESHPVAKRLAPLTDELTPMADRVNMGYMGTSLVGGRGAGVVVATGMET EMGVIAGMIQSVEEEETPLQKRLAQLGKYLVIISIIVCGIVVLTGVLRGEGFYKMFLA GVSLAVAAIPEGLPAIVTVALAIGVQRMVKRKAIIRKLPAVETLGCATVICSDKTGTL TQNEMTVRQIYTDRTMVAVTGQGYDPKGDFHGADPTKEKGPLQSALKIASLCNNSSLT RKGVQVAGMFRAAGKDSPWGIEGDPTEGALLVAAAKAGIWRETLERKEERVGEIPFDS DRKRMSVIYKGKREKKAYVKGAPDEILRRCRHELTSEGIVELNELRRRAILRANDEMA KKALRVLALAEKPLQENERIDERVEEDLTFVGLMGMIDPPRASAAKAIKVCRRAGIKP VMITGDHRLTAEAVARELGILKGNGDGILTGSDLDRMSDEALEKEVMNISVYARVTPK DKLRIVRALKKNDQVVAMTGDGVNDAPAVKEADIGISMGKTGTDVTKEASAMVLADDN FATIVAAVEEGRAIYDNIRKFIRYLLSCNIGEVLVMFLAALVGLPLPLLAIQILWVNL VTDGLPAMALGVDGMDKDIMNRKPREPGESIFARGLARKIMVRGLIIGLGSLLVFVTA MFLGVNMLAARTMAFTTLVFSQLFHVFDCKSETRGIFEVGIFSNPYLVAAVIGSTLMQ LSVIYLPPLQAIFKTTPLMGWQWALILAVAGGPSILIGLYRLVRNTWRGKEIMVGGK" gene 4153335..4155293 /locus_tag="Dhaf_3916" /db_xref="GeneID:7260937" CDS 4153335..4155293 /locus_tag="Dhaf_3916" /inference="protein motif:PFAM:PF05833" /note="PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: hmo:HM1_2121 fibronectin-binding protein" /codon_start=1 /transl_table=11 /product="Fibronectin-binding A domain protein" /protein_id="YP_002460367.1" /db_xref="GI:219669932" /db_xref="InterPro:IPR008532" /db_xref="InterPro:IPR008616" /db_xref="GeneID:7260937" /translation="MALDGITLHHLVQELAPQLAGARIDKITQPEKEEIHLQLRSQGQ SYRLLLNISATAARLHLSQTSKKNPASPPMFCMILRKHIEGGKILALEQLGLERIVLL TVQNYNEYGDLATLHLYLEIMGKHSNLILVDPQSGLILDGLKRYSHALSRHREVLPGR LYLAPPSQGKADPLASEEEWRTILFRDGLSEKVVDLLVRHYAGISPELAREIMTRSGL AQTITLDQCGDIDLSRIFQAYTLLANPAHTPPLEPTLYYQGAVKLTRPNPLPTAFTLL PFQQYQGLPAQSFPTLAEAVASFYQSKASSNTLEAKRGSLRKIIQEQLQHLHKKKGIY EDTLATAAKGLNYQRWGELLTANIYRLELGMKEIAAEDYNEESLPQVNIPLDPQLTGI ENSQRYYRLYNKAKATIQKTTPLKDAVEEEIAYLNSVLLSLEQATVPSELDEVHKELI EENYLSGKHHGKHHGKPLAGEGKNPGQNKQKGKPHKNSKQGQGGKGAKDAKGAKQGAK QGSKQGSKADSPQPKIYFSSQNRPILVGKNNRQNDWLTLKKGRPQDLWLHTKNIPGSH VLIPLEEGEEFPDDATLEEAAALAIHFSQAKGSTLVPVDYTHVKNIKKPNAAKPGMVI YEKNWTLYLTPQEEIVERLLASEGEEMP" gene 4155384..4155698 /locus_tag="Dhaf_3917" /db_xref="GeneID:7260938" CDS 4155384..4155698 /locus_tag="Dhaf_3917" /inference="protein motif:PFAM:PF01381" /note="PFAM: helix-turn-helix domain protein; KEGG: drm:Dred_0891 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_002460368.1" /db_xref="GI:219669933" /db_xref="InterPro:IPR001387" /db_xref="GeneID:7260938" /translation="MDIQERIKQLMDTKGWSEYKLAKEANLPQSTISHLFKRNNAPTY PTIEAICRAFGITMAQFFADEGEAVVLTLDQKELLLLWGTLTQEQRQIVISTMKHFNN ND" gene complement(4155815..4156402) /locus_tag="Dhaf_3918" /db_xref="GeneID:7260939" CDS complement(4155815..4156402) /locus_tag="Dhaf_3918" /inference="similar to AA sequence:KEGG:TTE1566" /note="KEGG: tte:TTE1566 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460369.1" /db_xref="GI:219669934" /db_xref="GeneID:7260939" /translation="MSSKKPRVRYELNSGDVSYLTDEEIRSILRAADELVAIGGRSML AKILKGSKDKKVREHGLDQCPAYGYYQELTLSEITNRIDWLIKKDYLKIEYRDRLPVL VFSEKGWEIERETYAEELLQQLIQLLEGKDYSFVQDLKDRNRGMILLLLEKIRRTGNA RFIPLLKAWKEIEYKKVQTEIQKVIDYLLKEGTLR" gene 4156538..4158025 /locus_tag="Dhaf_3919" /db_xref="GeneID:7260940" CDS 4156538..4158025 /locus_tag="Dhaf_3919" /inference="protein motif:PFAM:PF07719" /note="PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pth:PTH_0148 hypothetical protein" /codon_start=1 /transl_table=11 /product="Tetratricopeptide TPR_2 repeat protein" /protein_id="YP_002460370.1" /db_xref="GI:219669935" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="GeneID:7260940" /translation="MSYSIITEYSNQLHQLLVSVSQHLYFDKDGYVTYQKKPLGVNIK SCHKSRKEHLVYYVLRDHFSGTFTFQIATTKRLIPLADFLHYAWSEPKGEEKFIWGMP DSLFIPQMIASEELLSGLEALNVRPLHPPSGFASGVRVIRDIENDLCFFMRETVDYSL EGLNKLRFRVYQYLINSSHRDNKFSNWKAGLTYQSHPRITPVYSDFVNFFPADDPKAP SPIPLNQVPKDKQLEKRTRKSKKATPDYPPFSEEKLSHAQELIYDAWEEPNRQKCLAL ARKALRISPYCADAYTLLAEKCELLKERQELYTKGVEAGRMALGDSFFQEESGHFWGY LKARPYMRALAGLSECLWKNGLRQEAIESYKELLRLNPNDNQGIRYILINCLLAEGLD GEAEKLLSTYPESSCFMLYSKALLSFRRLKHRKAEASLKEALLSNPHVPPYLLGSKHL PWPLPAYYSPGSIEEAVIYAADACTVWKNTPNALTWLTEKLKSIT" gene complement(4158177..4158899) /locus_tag="Dhaf_3920" /db_xref="GeneID:7260941" CDS complement(4158177..4158899) /locus_tag="Dhaf_3920" /inference="similar to AA sequence:KEGG:XF1748" /note="KEGG: xfa:XF1748 5-amino-6-(5-phosphoribosylamino)uracil reductase" /codon_start=1 /transl_table=11 /product="5-amino-6-(5-phosphoribosylamino)uracil reductase" /protein_id="YP_002460371.1" /db_xref="GI:219669936" /db_xref="GeneID:7260941" /translation="MSRPYIFCHMMTSLDGKIMGSYMDTPEGEAAGKAFYNIAFGSNP HYQHQGWLSGRMTTDDNFTFYKPPVLDEEAPPVPEGDFVALPNAPMYYVSVDPSGKLG WENSQLTYEDTTAHVLEVLTEKAGNAYKAFLLKLGISYIIAGKDALDYALAMAKLKSL FGIQSLMLGGGGVLNWSFIQAGMCDELSVLIAAAADGSSETPTLFEARSGLAAESPVG FTLKSAEVKEGGSVWLRYTVNK" gene complement(4158997..4160166) /locus_tag="Dhaf_3921" /db_xref="GeneID:7260942" CDS complement(4158997..4160166) /locus_tag="Dhaf_3921" /inference="protein motif:PFAM:PF00465" /note="PFAM: iron-containing alcohol dehydrogenase; KEGG: mmp:MMP0802 iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_002460372.1" /db_xref="GI:219669937" /db_xref="InterPro:IPR001670" /db_xref="GeneID:7260942" /translation="MFNMYVPTRFVFGSGRLRELHQQKMPGKKALITISNGKSVRENG ALDRTQEQLRLAGVAMVVFDKIGANPTKTAVMEGAKSARDHGCDFIVALGGGSVMDAA KAIAMMATNDGDLWDYVGGKTGKGQALRHEPLPLVCITTTAGTGSEADQWGVVTNEET NEKIGVGGYDASFPVVSIIDPELMVSVPPKFTAYQGFDALFHATEGYISKFASPMSDM YALTAIENVGNYLVRACRDGRDMEAREGMAFANTLSGVVMTVSVTTAEHSLEHAMSAY HPELPHGAGLIMISRAFYEFFIEKHACDQRFVRMAQALGMKDAARPEDFITMLVKLQE NCGVADLKMSDYGMTPDEFDKLAANARETMGGLFAANPYAMTHEDCVEVYRKSYR" gene complement(4160159..4160575) /locus_tag="Dhaf_3922" /db_xref="GeneID:7260943" CDS complement(4160159..4160575) /locus_tag="Dhaf_3922" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: mbn:Mboo_0949 cupin 2 domain-containing protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_002460373.1" /db_xref="GI:219669938" /db_xref="InterPro:IPR013096" /db_xref="GeneID:7260943" /translation="MPNKEVFPKGSQAVANFTGAAFVNMLVPDGSGTYNCQVYDVIFE PGCRNDWHSHPGGQILLCTDGIGYYQEKDQPARRLQRGDVVEIPPQVEHWHGAAPDSS FTHIGISPNTRKGGATWLLPVTDEEYQQATGGNNHV" gene 4160704..4161174 /locus_tag="Dhaf_3923" /db_xref="GeneID:7260944" CDS 4160704..4161174 /locus_tag="Dhaf_3923" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: oih:OB0785 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002460374.1" /db_xref="GI:219669939" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7260944" /translation="MQQYSIGEVANIAGIAISTLRYYDREGLFPNLDRSEGGTRKFTD TEIETLGIIECLKTSGLSIKEIKLFLDWCQEGNSSLQKRRNLFYERLEVVTKQMEELQ KTLNTLRFKCWYYDTALAAGTEEVPKNLPPEEIPEDILAYQRSGCLNNSGHKHL" gene complement(4161375..4161485) /locus_tag="Dhaf_3924" /db_xref="GeneID:7260945" CDS complement(4161375..4161485) /locus_tag="Dhaf_3924" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460375.1" /db_xref="GI:219669940" /db_xref="GeneID:7260945" /translation="MSESRFKNSITLIVIEMIVYAAALVVLLNWGFHSAV" gene complement(4161491..4162201) /locus_tag="Dhaf_3925" /db_xref="GeneID:7260946" CDS complement(4161491..4162201) /locus_tag="Dhaf_3925" /inference="similar to AA sequence:KEGG:CHY_0355" /note="KEGG: chy:CHY_0355 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460376.1" /db_xref="GI:219669941" /db_xref="GeneID:7260946" /translation="MGKEQVYQRFDIHQRIQHMGMFISFFVLTITGLPIKFEQSRLSQ GVVSLFGGFDNLFYVHLLGGVLMIFASVYHLIYLVVVPLGGKKKSWAIVPTFKDFKDL IQNLGYFFGFKKEPARFDRYSYKEKFDYWAVFWGMVIMAGSGLMMWYPQFFTLFLPRW VIDSSRYAHTDEAILAISAIFIWHFYNVHFNNRYFPMSKAWYVGTLTREEMEEDHPIE LERIEREPNVLSKDKTKE" gene complement(4162207..4162842) /locus_tag="Dhaf_3926" /db_xref="GeneID:7260947" CDS complement(4162207..4162842) /locus_tag="Dhaf_3926" /inference="similar to AA sequence:KEGG:CHY_0354" /note="KEGG: chy:CHY_0354 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460377.1" /db_xref="GI:219669942" /db_xref="InterPro:IPR011031" /db_xref="GeneID:7260947" /translation="MNKKKRWAFKGIIFTFFFSFWLFANGAEVLAQLNCNQCHADVAN EFKSSVHSSLSCTSCHSDVTTYPHPESAKVDKKKSVAMCTTCHTGRVEDSYQHSFHGK AVFLGSQRSASCVDCHSAHEVLSHNNPNSQVAKENVPQTCAKCHDNPSPGFAQGTEHF ELSAMGPGKPMYYTAKFFVWLTMIAMTLLVIHIELQLYRELRTILQKRRRS" sig_peptide complement(4162207..4162287) /locus_tag="Dhaf_3926" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.919 at residue 27" gene complement(4163215..4163454) /locus_tag="Dhaf_3927" /db_xref="GeneID:7260948" CDS complement(4163215..4163454) /locus_tag="Dhaf_3927" /inference="similar to AA sequence:KEGG:PTH_0422" /note="KEGG: pth:PTH_0422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460378.1" /db_xref="GI:219669943" /db_xref="GeneID:7260948" /translation="MAITTTKVVRLTFTTTGGKTFSITIPNPKDDLQQAEAVAVMNSL IESDLFLTAGGSLLGIRDIKVVDTQTNDLYDPPQV" gene complement(4163505..4163729) /locus_tag="Dhaf_3928" /db_xref="GeneID:7260949" CDS complement(4163505..4163729) /locus_tag="Dhaf_3928" /inference="protein motif:PFAM:PF07872" /note="PFAM: protein of unknown function DUF1659; KEGG: dth:DICTH_0366 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1659" /protein_id="YP_002460379.1" /db_xref="GI:219669944" /db_xref="InterPro:IPR012454" /db_xref="GeneID:7260949" /translation="MAVTSTPLSSALVIVYQAGLTPLGAPVTRQKSLNGLRFDADEQA IYNAAHALFSLSQYSVLDVLNRKTFELLEE" gene 4164167..4165009 /locus_tag="Dhaf_3929" /db_xref="GeneID:7260950" CDS 4164167..4165009 /locus_tag="Dhaf_3929" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: lsp:Bsph_3778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460380.1" /db_xref="GI:219669945" /db_xref="GeneID:7260950" /translation="MNPTVPERTSLIIAVEINSIKDQTEKLVLHNFIEIGRRLHEAKA LLPHGEWLQWLEESVDFSPNRAAKLMRLYDAYGLPHSSLLDSDAQDQVLSKLSYTQAL ILLGVPEEERTQLLLDLDIENMSTRELKKAVDKQKQIQQEKERAEQENTALRQALDGV KEANTELAKERDSLKQEAVELRKTQQALQENVEKATLQNKKLKENMNYKSYQRVRNDL AAAQTKLFTSQVAFKYEALERAFKELSYELDLLANLDAQVHAGYMSKLNDFLLKAMRG RMQG" repeat_region complement(4165531..4166023) /note="CRISPRs" /rpt_unit_range=4165531..4165560 gene complement(4166165..4166428) /locus_tag="Dhaf_3930" /db_xref="GeneID:7260951" CDS complement(4166165..4166428) /locus_tag="Dhaf_3930" /inference="protein motif:TFAM:TIGR01573" /note="TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: tpd:Teth39_0135 CRISPR-associated Cas2 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas2" /protein_id="YP_002460381.1" /db_xref="GI:219669946" /db_xref="InterPro:IPR003799" /db_xref="GeneID:7260951" /translation="MFVILVYDMGEKRVAKALKRCRKYLNWVQNSVFEGEISESNLAK LKMELDRIIVPEEDSVIIYTLRTTRYSEREIMGLRKGGQNLII" gene complement(4166529..4167524) /locus_tag="Dhaf_3931" /db_xref="GeneID:7260952" CDS complement(4166529..4167524) /locus_tag="Dhaf_3931" /inference="protein motif:TFAM:TIGR00287" /note="TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: tpd:Teth39_0134 CRISPR-associated Cas1 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas1" /protein_id="YP_002460382.1" /db_xref="GI:219669947" /db_xref="InterPro:IPR002729" /db_xref="GeneID:7260952" /translation="MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFG EVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRL LLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNI REHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPR IGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENG RRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW" gene complement(4167593..4168102) /locus_tag="Dhaf_3932" /db_xref="GeneID:7260953" CDS complement(4167593..4168102) /locus_tag="Dhaf_3932" /inference="protein motif:TFAM:TIGR00372" /note="TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: pth:PTH_1915 endonuclease" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas4" /protein_id="YP_002460383.1" /db_xref="GI:219669948" /db_xref="InterPro:IPR002785" /db_xref="InterPro:IPR013343" /db_xref="GeneID:7260953" /translation="MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDPNLDLGRF IHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELK ERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRN CAYKEFCWA" gene complement(4168125..4170542) /locus_tag="Dhaf_3933" /db_xref="GeneID:7260954" CDS complement(4168125..4170542) /locus_tag="Dhaf_3933" /inference="protein motif:TFAM:TIGR01587" /note="TIGRFAM: CRISPR-associated helicase Cas3; SMART: DEAD-like helicases; KEGG: pth:PTH_1916 helicases" /codon_start=1 /transl_table=11 /product="CRISPR-associated helicase Cas3" /protein_id="YP_002460384.1" /db_xref="GI:219669949" /db_xref="InterPro:IPR006474" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260954" /translation="MSRLIPFAQCIARPDEQGGTHLLKDHLLGVKEAVEQRLKSECCP YCHDRIFIRLAGLAGVCHDMAKAHRRWQSYIRGQNKGGPNHAPEGAFLFSYLGFHLLQ QESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEEMDLPGITRFIEQIYPE LRQVPITAEALDQWIDRLYDVLQEASDGLDLGYSPDYGKAMAQLTFWRELTTALIAGD RFHVAPMERVGFSQEDHIRHDRALDEFCRNNGEQVMADIRGQAQRQILNQLARDPRRR IYTLEMPTGYGKTITALKIAAWLGREQGYEKIIYVAPYLSILEQTSGVMEKAMGASVL EHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTL RRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQ PGCLAVNPVQQIERYQVEQKREMDEQGVAGYLLKGSELLAADERGLSQAAILNTIADA YLVYKQLAARVEPSQLKLLHGMMIPLHKRVEIEKIRHFQAENKREGQYVVSTQIIEAG VDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSEL QKLTDELLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQF KPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRL SFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAV EGFDAII" repeat_region complement(4171123..4172621) /note="ISDha7" gene complement(4171382..4172553) /locus_tag="Dhaf_3934" /db_xref="GeneID:7260955" CDS complement(join(4171382..4172302,4172302..4172553)) /locus_tag="Dhaf_3934" /ribosomal_slippage /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_002460385.1" /db_xref="GI:219669950" /db_xref="GeneID:7260955" /translation="MSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTVRNW LKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDILKKGYRHLRPKQPEIIYQMI KKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQAMIG LDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLLNQK FKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEALRN AVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFFSTI KSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKAA" gene complement(4172575..4172805) /locus_tag="Dhaf_3936" /db_xref="GeneID:7260956" CDS complement(4172575..4172805) /locus_tag="Dhaf_3936" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460386.1" /db_xref="GI:219669951" /db_xref="GeneID:7260956" /translation="MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSET QAISKKVDMTWRAIQELMTHTRFVGHRRVRVK" repeat_region complement(4173056..4174144) /note="CRISPRs" /rpt_unit_range=4173056..4173086 gene complement(4174329..4175024) /locus_tag="Dhaf_3937" /db_xref="GeneID:7260957" CDS complement(4174329..4175024) /locus_tag="Dhaf_3937" /inference="protein motif:TFAM:TIGR02593" /note="TIGRFAM: CRISPR-associated protein Cas5; PFAM: protein of unknown function DUF522; KEGG: pth:PTH_1917 hypothetical protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas5" /protein_id="YP_002460387.1" /db_xref="GI:219669952" /db_xref="InterPro:IPR007552" /db_xref="InterPro:IPR013422" /db_xref="GeneID:7260957" /translation="MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILG IEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEE YTEQLLDFLTGERAVYTTYLGTAYALTKPILYKVYPEVSYPVAEGKEIEMRTVVPTAL IREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDL RVAQFGEDLVCLV" gene complement(4175068..4176018) /locus_tag="Dhaf_3938" /db_xref="GeneID:7260958" CDS complement(4175068..4176018) /locus_tag="Dhaf_3938" /inference="protein motif:TFAM:TIGR01595" /note="TIGRFAM: CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: fgenesh4_pg.C_scaffold_20621000001" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein, CT1132 family" /protein_id="YP_002460388.1" /db_xref="GI:219669953" /db_xref="InterPro:IPR006482" /db_xref="GeneID:7260958" /translation="MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVS IKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKE DMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMD STADGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQH RQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFD LTRLLAAVAEKQDKIAQCRIWAHPGVTISGDIAPWLQPLW" gene complement(4176011..4178068) /locus_tag="Dhaf_3939" /db_xref="GeneID:7260959" CDS complement(4176011..4178068) /locus_tag="Dhaf_3939" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: pth:PTH_1919 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460389.1" /db_xref="GI:219669954" /db_xref="GeneID:7260959" /translation="MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFL LEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPC YLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAEL ITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIG RAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTK GIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGI PMVLPLTDGDSRQLFVKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTIL YYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSARETGKIQEAFGVREQPVYRTQ NLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELV FHYSFLYFLKEYEEKILHKQGGVRTLADWDEFKALYAQGKLELSHLAKAEQLGFAAGL LLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFR PMLAQTLLEFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTESDPEVKEEDGGR DNE" gene complement(4178226..4178570) /locus_tag="Dhaf_3940" /db_xref="GeneID:7260960" CDS complement(4178226..4178570) /locus_tag="Dhaf_3940" /inference="protein motif:PFAM:PF01934" /note="PFAM: protein of unknown function DUF86; KEGG: swo:Swol_0604 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF86" /protein_id="YP_002460390.1" /db_xref="GI:219669955" /db_xref="InterPro:IPR008201" /db_xref="GeneID:7260960" /translation="MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFC IGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELV QQINQLLGEKRT" gene complement(4178560..4178859) /locus_tag="Dhaf_3941" /db_xref="GeneID:7260961" CDS complement(4178560..4178859) /locus_tag="Dhaf_3941" /inference="protein motif:PFAM:PF01909" /note="PFAM: DNA polymerase beta domain protein region; KEGG: swo:Swol_0603 hypothetical protein" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_002460391.1" /db_xref="GI:219669956" /db_xref="InterPro:IPR002934" /db_xref="GeneID:7260961" /translation="MSMDVAEIKDKLFPIFEAAPIYQAILFGSFAQNKATDSSDVDIV IDSRGELLNIKFYGVLEDITQTLGRKVDLFEISEIRPGSPIDHEIRQQGVLLYDR" repeat_region complement(4179352..4183305) /note="CRISPRs" /rpt_unit_range=4179352..4179382 gene complement(4183712..4184452) /locus_tag="Dhaf_3942" /db_xref="GeneID:7260962" CDS complement(4183712..4184452) /locus_tag="Dhaf_3942" /inference="protein motif:TFAM:TIGR01877" /note="TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: pth:PTH_1921 hypothetical protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas6" /protein_id="YP_002460392.1" /db_xref="GI:219669957" /db_xref="InterPro:IPR002743" /db_xref="InterPro:IPR010156" /db_xref="GeneID:7260962" /translation="MNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKG YSDGNRAFKLFCFSLIQGVYQMDRVNKRIAFEGELKLTVSSPLQDFCQSLVNVLLTKG VMRLGAQELEIDRISAGQYKVRENKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETD YSRLFNENLRKKYRALYGSEGPEGEVEIRPLGIQRMRIVNYKNTVIKGYAGKLLLSGP KELLQLAVDGGIGSKNSQGFGCVEIING" gene complement(4184736..4185281) /locus_tag="Dhaf_3943" /db_xref="GeneID:7260963" CDS complement(4184736..4185281) /locus_tag="Dhaf_3943" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: lwe:lwe1316 acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002460393.1" /db_xref="GI:219669958" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7260963" /translation="MIYFETPRLIFRDWKEQDLREFRMMNKDSRVMRYFPETLTEQET DSLYEMIRDELSLGYGAYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIAWRLNYAAW GKGYATEGAKACLDYGFNTLGLDEVYSFTAKANLPSENVMKKLGMKKVMEFKHPHVAE NSPLAEHVLYRCQLKSREEDG" gene complement(4185527..4185694) /locus_tag="Dhaf_3944" /db_xref="GeneID:7260964" CDS complement(4185527..4185694) /locus_tag="Dhaf_3944" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460394.1" /db_xref="GI:219669959" /db_xref="GeneID:7260964" /translation="MTDYKKMYFQLAAKVADAMDILLKAQREGEKEFMDGEPFPEGKV MVIQDEGCECE" gene complement(4186629..4187129) /locus_tag="Dhaf_3945" /db_xref="GeneID:7260965" CDS complement(4186629..4187129) /locus_tag="Dhaf_3945" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; KEGG: rca:Rcas_3032 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002460395.1" /db_xref="GI:219669960" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260965" /translation="MFLMAKLDDGQIRFNQERFDLAALGRQIIHEASLQTGGKRLDFE LSCVEEVACFCGDRFYLQQAVENIVANAIRHSNDNGKIGISITVEKGMYHFAVSDTGS GIEPQDLPHIFEPYYTKKQAGFHTTGLGLGLAISREIVRRLGGTITVASRPGEGAVFT LLLPPS" gene complement(4187362..4188258) /locus_tag="Dhaf_3946" /db_xref="GeneID:7260966" CDS complement(4187362..4188258) /locus_tag="Dhaf_3946" /inference="protein motif:PFAM:PF02518" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbb:CLD_0526 two component sensor kinase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002460396.1" /db_xref="GI:219669961" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7260966" /translation="MLPWILCAGLSLAVAVLCVKIRLLHQSMDEIRVEFKERLTLDTN TLISISSTDPRARRLAADINTQLRLLRRQRRHYLNGDRELKEAVTNISHDLRTPLTAI CGYLELLEEEEKSAAAARYLAFIANRTETLKQLTEELFRYSLILAARDTMQMELLSVK GVLEESLAAVYPALLERRITPVVHLPEQPVKRRLDKGALSRIFGNILNNALKYSDGDL EVRLRDNGEVLFTNTAAALDEVQVGKLFNRFFTVEAARHSTGLGLAIAKTLVEQMNGE ITAHYREQKLSICIRFPLAEPD" gene complement(4188274..4189107) /locus_tag="Dhaf_3947" /db_xref="GeneID:7260967" CDS complement(4188274..4189107) /locus_tag="Dhaf_3947" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: bpt:Bpet0290 putative ABC-2 type transport system permease protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460397.1" /db_xref="GI:219669962" /db_xref="GeneID:7260967" /translation="MGNLLTAGFCRLGKNKVFWLGMLAMLAISTGMMLNASRQAGAMM AEGYLRTLDDYYFKLAPVIGLCCAIFASLFIGTEHSEGTLRNKIVVGRTRPAIYLANY VICFAAGVCFVALWLLGGLVGIPVLGVWEMGTNGVLLYVVTALCFTGAWTGMFTLLAM LSSNKATTAVLAILLALGLLVAAALLYNSLCVPELNSGMVITKNGMEMAEPTPNPNYV SGMKRTLYQLVLDCLPSGQGILMANQELGRPLLSLAASGVIALATTAAGVFAFGKKDL K" sig_peptide complement(4188274..4188396) /locus_tag="Dhaf_3947" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.928) with cleavage site probability 0.420 at residue 41" gene complement(4189129..4190013) /locus_tag="Dhaf_3948" /db_xref="GeneID:7260968" CDS complement(4189129..4190013) /locus_tag="Dhaf_3948" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2734 ABC-type multidrug transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460398.1" /db_xref="GI:219669963" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260968" /translation="MDYVLTTHALSKHYGQFKALNGLSLHVPQGAIYGFVGKNGAGKT TLIRLVCGLQRPTSGDYSLYGVSSRTREIVKSRRRMGAVVETPSIYLEMTARENLKEQ YRVLGLPSFEGIPELLELVGLAEAGQKKAKNFSLGMKQRLGIAVALCGDPDFLVLDEP VNGLDPQGIIEMRELILKLNREQRITVLISSHILDELARLATHYGFIDGGRMVKEISA GELEEACRKCLRVEVSSTETLARVLDGLQLDYKILSERRADVFAKVNISQLTLALARE GCEVISVQERDEGLEAII" gene complement(4190152..4190811) /locus_tag="Dhaf_3949" /db_xref="GeneID:7260969" CDS complement(4190152..4190811) /locus_tag="Dhaf_3949" /inference="protein motif:PFAM:PF00072" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpy:Cphy_0358 two component transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_002460399.1" /db_xref="GI:219669964" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:7260969" /translation="MRILIIEDDLHIGNMLEEVLVKKGYAVARAYSGTEALLALPVEK PDLILLDLMLPGLSGEDIMPKLKGIPVIVVSAKTDIDDKVGLLLEGAVDYITKPFHMK ELLARVVVGLRKGPEPDKSVLAFADIRLYTALHTVWVAEKEVRLTRTEYAILKLLMQN PAQVITKSLLLDRISEDTPDCTESSLKMHISHLRRKLREASGQDYIEAVWGIGFKLKT D" gene complement(4191109..4191350) /locus_tag="Dhaf_3950" /pseudo /db_xref="GeneID:7260970" gene 4191475..4192695 /locus_tag="Dhaf_3951" /db_xref="GeneID:7260971" CDS 4191475..4192695 /locus_tag="Dhaf_3951" /inference="protein motif:PFAM:PF01420" /note="PFAM: restriction modification system DNA specificity domain; KEGG: yps:YPTB0536 putative type I restriction enzyme, S subunit" /codon_start=1 /transl_table=11 /product="restriction modification system DNA specificity domain protein" /protein_id="YP_002460400.1" /db_xref="GI:219669965" /db_xref="InterPro:IPR000055" /db_xref="GeneID:7260971" /translation="MGEIVKKLKSYPLSRDVETKERTGYRYIHYGDIHKQIADLIVQD EDLPSIKEGDYIPLNQGDLVLADVSEDYTGIAEPSIILHEPKTKIIAGLHTIAIRPQS ATSLYLYYLLHTERFKKFGSHVGTGLKVFGITFNNLSLFQIKTPSFPEQTAIGNFFRT LDDTITLHKRKLDKLKELKNGYLQKLFPQPGEDVPRVRFAGFNEPWEVRSFENILAPA VASNTLSRAELSYEKGSIKNIHYGDILVRFGVYIDIARDPIPCIANGRIIDYKNKLLQ EGDVIFADTAEDETVGKAVEITNISNFQVVSGLHTMAYRPKIKMSPYYLGYYLNSHSF RYQLLPLMQGVKVLSLSRKNLSKTLIRYPAVLSEQSQIGDFLRNLDEQIFTLYNKLGK LKQLKSFYLQKMFI" gene 4192771..4193703 /locus_tag="Dhaf_3952" /db_xref="GeneID:7260972" CDS 4192771..4193703 /locus_tag="Dhaf_3952" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: lwe:lwe0480 bacteriophage integrase, putative" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_002460401.1" /db_xref="GI:219669966" /db_xref="InterPro:IPR002104" /db_xref="GeneID:7260972" /translation="MLTKERTLQYFHEYFSEWIEIYKRGAVRPVTYQKYLMTLQRLTE LSPNLKICELDKRKYQTLLNDYAKTHERQTTMDFHHHLKSAILDAMDEGLLTIDPTRK VIIKGKPVSDKKNKFLSQFELQSLLKSLNLTDKPNWDWFILLVAKTGLRFSEALALTP KDFDFECQKVKISKTWNYKNAEGGFGETKNLSSKRTIQIDIQLNTQIERLSKDLADDE PIFVQGRVFNSTVNNRLKVLCKKAGVPIISAHCLRHTHASLLIFAGVSIASIAKRLGH SSISTTQETYLHIIKELESQDNDKIMSHLSMITQ" gene complement(4193726..4194967) /locus_tag="Dhaf_3953" /db_xref="GeneID:7260973" CDS complement(4193726..4194967) /locus_tag="Dhaf_3953" /inference="protein motif:PFAM:PF01420" /note="PFAM: restriction modification system DNA specificity domain; KEGG: ypy:YPK_3673 restriction modification system DNA specificity subunit" /codon_start=1 /transl_table=11 /product="restriction modification system DNA specificity domain protein" /protein_id="YP_002460402.1" /db_xref="GI:219669967" /db_xref="InterPro:IPR000055" /db_xref="GeneID:7260973" /translation="MKDKNTKVPEIRFRGFTDAWEQRELGEDIKFVGGATPFKENPEY WNGDIVWLSSQEIKERFVTSGTYKITKKAVKDNATKVIKAGTPLIVTRSGILAKRFPI SIPTVDVAINQDIKALLYDDERIATDFLIAGLQKNEGFILKHIVKTGTTVQSINLPDF QKFLMAYPMLPEQTAIGNFFRTLDDTITLHKRKLDKLKELKKAYLQRMFPQAGNDVPK VRFAGFTEPWASRKLGEVAEIVRGASPRPIQDPKWFDEKSNVGWLRISDVSVQDGRVH YLEQHISKAGQKKTRVLTQPHLLLSIAASVGKPVINYVNTGVHDGFLIFQNPNFEIEF MFQWLKMFEEQWLKYGQPGSQINLNSDIVKNQDISIPTKEEQKHIGNLFLNLDNQVFV RQQKLDQLNQLKRSYLQRMFL" gene complement(4195014..4196591) /locus_tag="Dhaf_3954" /db_xref="GeneID:7260974" CDS complement(4195014..4196591) /locus_tag="Dhaf_3954" /inference="protein motif:TFAM:TIGR00497" /note="TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: lci:LCK_00905 type I restriction-modification system, M subunit" /codon_start=1 /transl_table=11 /product="type I restriction-modification system, M subunit" /protein_id="YP_002460403.1" /db_xref="GI:219669968" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR003356" /db_xref="InterPro:IPR004546" /db_xref="GeneID:7260974" /translation="MSELNNQLWASADILRGKMDASEYKNYLLGLVFYKYLSDQELRA VYEEEQGKVAEYPSRDEQFSGLLDWYNDDAAGIREIISKKLGYFIEPDSLFYTFRKKA GEYELHISDIQNAFIELGRQGEHFAGLFDDVDLASTKLGANAQQRNVTITEVIKALDE IDLFGHDGDVIGDAYEYLIGQFAAGAGKKAGEFYTPQAVSKIISEIVAIGQEETAPFH IYDPTMGSGSLMLNIRRFVKNPGQVHYHGQELNTTTYNLARMNLILHNVEQSQMRLRN GDTLDEDWPTDEPYLFNAVVMNPPYSANWSADGKFLSDPRFEQYGKLAPKSKADFSFL LHGFYHLNEKGTMGIVLPHGVLFRGASEGVIRKTLLDMGAIEAVIGLPANIFYGTSIP TVVLILKKNRAKRDVLFIDASKAFEKQKNQNCIRSQDIRKIVDTYKKRSSSPQYAHLA DYDEIVRNDYNLNIPRYVDTFEEEAPIDIVALSKEITDLNLQIKQREAEFLGMLSQLA ITDETKELIEATKGIFM" gene complement(4196584..4199712) /locus_tag="Dhaf_3955" /db_xref="GeneID:7260975" CDS complement(4196584..4199712) /locus_tag="Dhaf_3955" /inference="protein motif:TFAM:TIGR00348" /note="KEGG: lci:LCK_00906 type IC restriction subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="type I site-specific deoxyribonuclease, HsdR family" /protein_id="YP_002460404.1" /db_xref="GI:219669969" /db_xref="InterPro:IPR004473" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR007409" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:7260975" /translation="MTPENQIESTFIDILTMRENQWTYRGDIKTESELWENLRGHINR INLARLDGVLLTDSEFKQVRDEFNRLTQTPFKASQWLRGENGIAQISIERDELAKGNV ALTLFSNKDIAGGISSYEVVNQVVPVVEGRTTRGDVTLLINGLPVIHIELKSELAKDG YWQAFQQIERYAQSGFFDGIYSTVQIFVVSNKVSTRYFARPRANNDFESAKKFLFNWR EPDNAPIEDLYDFTKKALSIPMAHELISRFSILVDDKKGQKFMMVLRPYQIHAIKKIM KQAYSHEGGFLWHATGSGKTITSFVATKLLAQSAISVARTVMIVDRKDLDSQTKNEFS KFASEYNTGLASGKGADNTLIVGIDNKRELVENFLSRKNNNTIIITTIQKLSRAIRES KKSEVNKFQKLKGEHIVFIVDECHRAVSDQEMREIKKIFPKSSWIGLTGTPIFETNKK QENGTYARTTFDQYGELLHAYTTKNAMEDKSVLDFQVEYHSLLSEEEEERIYLRKIRA KYPNDDPEAKLKAMLDDIEKEELLESADYENDAYVETMLKKIFKHQSILEKFRVRDGI PTMSAILTTHSIAQAKRIYRKLVDLKKAGSLITGKPIDERRRLNDPDFPRVAITYSVT ENQDKMIAANKELSEIMKQYNSLFGTNYTDIDLYNQNINNRLARKDAQYQKDGQWLDL VIVVDRLLTGFDAPTIQTLYVDRELRYQKLLQAFSRTNRTCSGKSIGMIVTFRKPNTM VENVRDAIKLFSNEERDWEKLVPKQYREVKQNLKAAYKKFREANRELIENPTDIKKQL QAIKAFQMMKNLGESIKSYEEYETDFANLSDIVQTVADEMGHIENLKGEVREALTEAS IHDDPLPELLEIEFSSDQRATLEEKIDSYYISQLLKDIKDEKSKQKFNEIIKNKAPIV KAVYEEALESLADDQKIVNSVDSHFRYAIGEIIRETSSVLKVPEEDLKISFNEYRRDK PEVPYINMIIDNSTITREEFEQIFYKKFRERRRTIENYWKKEMNSKLLPLKDELANFD NELKKWRDPNNE" gene complement(4199748..4199945) /locus_tag="Dhaf_3956" /db_xref="GeneID:7260976" CDS complement(4199748..4199945) /locus_tag="Dhaf_3956" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cth:Cthe_0522 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460405.1" /db_xref="GI:219669970" /db_xref="GeneID:7260976" /translation="MDLITTKEAAEIWGITIRRVQALCDNRRIPSAFKLGDIWVMPKD TPKPLDGRTKAARAMSQKNKR" gene complement(4200635..4200877) /locus_tag="Dhaf_3957" /db_xref="GeneID:7260977" CDS complement(4200635..4200877) /locus_tag="Dhaf_3957" /inference="similar to AA sequence:KEGG:CAC2470" /note="KEGG: cac:CAC2470 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460406.1" /db_xref="GI:219669971" /db_xref="GeneID:7260977" /translation="MKTCIACGMPMTKAADYALGDESKDYCLYCARPDGSMQSYPEKV EGMTDFLIRTQGLDQEAARQTAIRTLSKLPAWQDRE" gene complement(4201019..4201189) /locus_tag="Dhaf_3958" /db_xref="GeneID:7260978" CDS complement(4201019..4201189) /locus_tag="Dhaf_3958" /inference="similar to AA sequence:KEGG:BLi03718" /note="KEGG: bld:BLi03718 YdfF" /codon_start=1 /transl_table=11 /product="YdfF" /protein_id="YP_002460407.1" /db_xref="GI:219669972" /db_xref="GeneID:7260978" /translation="MMAKTPQVLKGRSCYGHLGGTLGGRLFERLVELGWFEQEKSTVY LLTERGKQGLRN" gene complement(4201186..4201800) /locus_tag="Dhaf_3959" /db_xref="GeneID:7260979" CDS complement(4201186..4201800) /locus_tag="Dhaf_3959" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: cac:CAC2471 TetR/AcrR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_002460408.1" /db_xref="GI:219669973" /db_xref="InterPro:IPR001647" /db_xref="GeneID:7260979" /translation="MKKSNRQLQKVQTKETLLNKAYQLFSSQGIMNTRMSDIAQAAGV SHGTVFAHFQTQEMLITEVIETYGEKIARRTHEAAGTCEHMEELLAAHLAGIGEFEPF YARLVIENRLLPPEARDVWVSIQSAISFHFSQVAQREIGSGQSIDLPLYFLFNTWVGL VHYYLVNGDLFAPEGNVVGRYGDTLVDHYMKMIRRDGGKGGEKE" gene complement(4202017..4203750) /locus_tag="Dhaf_3960" /db_xref="GeneID:7260980" CDS complement(4202017..4203750) /locus_tag="Dhaf_3960" /inference="protein motif:PFAM:PF00890" /note="PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpy:Cphy_3299 flavocytochrome c" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /protein_id="YP_002460409.1" /db_xref="GI:219669974" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004792" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR007329" /db_xref="InterPro:IPR013027" /db_xref="GeneID:7260980" /translation="MKKKKVISILSVFLCLTLGLAGCTAAPAGGGNPAPAEAGMVPGD YLGVGNGRNGPIVVKVTLGADSIDAVKVVSERETHNTGSVPIQQYPDLIVQNQTLDLD IVSGATISSAAFLNAVRNAVTQAGGDPARFTGKVSADVPHEDTTADVVVVGAGGAGMT AAISAANAGKKVILLEKLGFVGGTSNYSIESFGAIGDKTHIALGSDVTADEQAAILTK QNPNGTAEAFSVLTHNNGAAADWLRTIGAQLTVAGGQISSTSSREVGEFGNTIVSALK AECAKAGVDVRVNSKAAELVMKDGMVDGVKVSTKQGDYTISAKAVVIASGGFGANNKM VAEYAPTLKDYKSSCSPGGTGDGHLMAQAAGADLKNMDYIRVNFTYTTAENGYFYYMG SLFNTGAIFVNKDGQRFVNDQGGYGVGPQVVAQGGSGWAIFDDSLVAGVKDVREYEKL GLFVSANTIEELADKIGVNKENLVKTITNYKGYVANGKDEEFGRAMLNMTFDEAPYYA APMTCRVQGTFGGINTDVKAQVLNTEGTAIPGLFAAGECANDGTWGANPAAVNLVFGR IAGQNAAAYVK" sig_peptide complement(4202017..4202109) /locus_tag="Dhaf_3960" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.532 at residue 31" gene 4203853..4204650 /locus_tag="Dhaf_3961" /db_xref="GeneID:7260981" CDS 4203853..4204650 /locus_tag="Dhaf_3961" /inference="protein motif:PFAM:PF00376" /note="PFAM: regulatory protein MerR; KEGG: pca:Pcar_2182 predicted MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_002460410.1" /db_xref="GI:219669975" /db_xref="InterPro:IPR000551" /db_xref="GeneID:7260981" /translation="MKVTVRKLADCIGVTPETIRHYREIGLLNPKVRENGYYDYTVND ALAALLTREMRTYGMQLESIRDSSGSIGEYNKLLADREGELEQEIEMLRLELSRMQET RIYASCGLRILNKVEEFAGPPTWAVAAINRKKGFLPDCGVEQWVKHFPFTYVSATIPL EELNSRKGPDLYDIQIGLGALIHYVEKFRLPLDGRAYYQPGGRFIRTCITTRDLFSLC PQDISPLLEHAEAHGYVFASCTGGRLLYIDRTEKGPLFYLLVWVRVD" gene complement(4204647..4206038) /locus_tag="Dhaf_3962" /db_xref="GeneID:7260982" CDS complement(4204647..4206038) /locus_tag="Dhaf_3962" /inference="protein motif:PFAM:PF00425" /note="PFAM: Chorismate binding-like; KEGG: plu:plu2324 hypothetical protein" /codon_start=1 /transl_table=11 /product="Chorismate binding-like protein" /protein_id="YP_002460411.1" /db_xref="GI:219669976" /db_xref="InterPro:IPR005801" /db_xref="InterPro:IPR015890" /db_xref="GeneID:7260982" /translation="MPFQFEKRVDFCQWMEREEHLMKKYYEKNISMESSKAIYEIAGR LCGGEKENVYLYENKDCVSVGVGIYCEIIVTPEEMVMEKESVRQSIKVSELCRDLDKL FKSVAVDSWRAYGIANFGLARYLYDLNRGGETEELFHFIIPDKEYRVHKDTILLRAFH KEDIERMEKTIANVLPNSAKEKNAVLYDGQEILLFDEEYYKEIVELAVKEIRDKKYQK VILSRKIPVHHRLDMLQTYLQGRQGNTPARSYYYRFPNLEVAGFSPETIAEVDDSGTV YTFPLAGTRALLNDSKANNSLKEELLQDAKEITEHAISVKLADAELEQVCEPDSVAVI EFMSVIERGTVQHLGSRLRGKLRAEYNSWHAFCSLFPAVTASGIPKKEAIEAIGRIEK DARNLYSGAVLTYDDNGTLDAALVLRSIFQNSEETWVRVGAGIVEMSHPQRELTETQE KVSSVARRLVKEG" gene complement(4206172..4206954) /locus_tag="Dhaf_3963" /db_xref="GeneID:7260983" CDS complement(4206172..4206954) /locus_tag="Dhaf_3963" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cac:CAC1450 alpha/beta superfamily hydrolase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460412.1" /db_xref="GI:219669977" /db_xref="GeneID:7260983" /translation="MSMKKGNCKLHRMGEPHGPKVLLIHGAGFYWQTCFARIIRDLKD RYCLLIPELEGHTAHPREYMVSVEETAGKLGEALEELRVDKVQAIYGVSLGASVAVEM AIRGEIKVMNLLLDGGQYEGMGEMTEQYANIMADAFLNLLAGEHLPSPVKENMGFAAN NDVEVLQPLIYEHITREALLHALLAAYRYDLKAKNARVDARVSVLIGGNEIYGAQFTP LLAEISRHPLDIYEFPNRGHAEVLSKEPEKISRLIREILNYC" gene complement(4206929..4208011) /locus_tag="Dhaf_3964" /db_xref="GeneID:7260984" CDS complement(4206929..4208011) /locus_tag="Dhaf_3964" /inference="protein motif:PFAM:PF03435" /note="PFAM: Saccharopine dehydrogenase; KEGG: pfl:PFL_3491 hypothetical protein" /codon_start=1 /transl_table=11 /product="Saccharopine dehydrogenase" /protein_id="YP_002460413.1" /db_xref="GI:219669978" /db_xref="InterPro:IPR005097" /db_xref="GeneID:7260984" /translation="MHRIGVLGGTGEIGSRIVNLLKGEYSLMASYHSQSRPSAAGCEY VKLDIADAEQLQHFCRQCHVLINCAGASFLNGEKVARMAAHWQIPYIDPSGEAFLEER LEDRKDKAVFVLSAGYFPGMSGLLMRHVCESFDTPETISGLSVSEEIPSMSAIEDFIL TNLSGFGTALSYYDHGAVVRDEGERLERIRGREFRFQNYLTVETARVAQHYGLKEAHW YHSSFGDQVIRKLQEAVIQYKLERAGYKSIVREVIEIFRQTMAGRESFSYTRIEGQGL LGKERTLMTAEVSSDCSSEISAIIAAYAAKAVLAKPLPPGIHYAMDIINMEEILKDLA ELKAEIRISKVVLEQEVDDEYEEGEL" gene complement(4208030..4213699) /locus_tag="Dhaf_3965" /db_xref="GeneID:7260985" CDS complement(4208030..4213699) /locus_tag="Dhaf_3965" /inference="protein motif:TFAM:TIGR01733" /note="TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KEGG: pfl:PFL_3492 pyochelin synthetase F" /codon_start=1 /transl_table=11 /product="amino acid adenylation domain protein" /protein_id="YP_002460414.1" /db_xref="GI:219669979" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR001242" /db_xref="InterPro:IPR003006" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR006163" /db_xref="InterPro:IPR010071" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="InterPro:IPR013624" /db_xref="GeneID:7260985" /translation="MTIEKRMKEFRNQGIVLWPEGTALKFKAPKGVVTEEIRSFLKEN KQRIIQYLEGNQQAAWARNRAGRFNKFPLTDIQNSYVVGRNKHYELGGVACHGYLEIE FEEILDIERLETAWNKVIQKHDMLRAIVYDVGYQIVQETVPLVRIPAIDLRGGGNDKG REALRKSLAHKQYPLGQWPMCDVAVSIDEEKSVVHFSVDMLIADFSSMNIILNDLEHF YRNPEEPISYPTLYRDSVMYQNDRKMLNPQERQAAEAYWEQKLPSLGEAPELPVIKKT GLTEHTFSQKKLFLERERWQGFCERAKDAQITPSVLVMAALAEVTALWSSSHKFSINT TIFNRPPLAEDIHQVVGDFTDVIVSSIDLDFSIPFSQRAQAIQKDLWTDLEHSALSGV EVLRKMTKERKKNIIIPVVFTSTAGIAGKEDATVRRSIRYKISQTPQVYLDCQVADEN GGAKINWDVRDGVFEEPVISDMFESFSRLISSLCEPEQQVLADYFPVELPLGTREVRN ITNSTAREYPPRMMEEGFLHALRHYPNKTALITDREEFTYASFSRYVKTVVDLLKEQD VRPGDRVGISIDKNQWQIAAVMAVLLVKGTYVPIDVHQPSARQEKIIKGAGIKVLLIQ DEDYSSQKGHPAREGCSAQGGCPPWEGCTTINLQGVSLGNEPLDVFTSDPDDSGSGGP GSAAPGSVALGSASSGPDYDRPAYIIFTSGTTGEPKGVVISHRAAMNTIMDVNHRYGI DESDVFLCLANLSFDLSVYDIFGCFAAGGTLVMPASSQIRDPKYLYDLILLNRISVWN SVPAQMQMVVNYLESVESMKKKTSLSKVFLSGDWIPVNLPERIGAMFPQARVVSMGGA TEASIWSIYYDIAKGEVFGKSVPYGKPMANQRFYVLNGEGRPCPDYVEGNLYIAGDGL SLGYLNDEKLNGEKYGRLPATGERIYRTGDRGYYRRDGNIMFRGREAGDEQIKIHGHR IELAEIRTALTDYPLIDSALALAVGTPPDELKISAVMTPKRRSEQQDIEPDDQELAML AAAGRFYETGMDGELLEKWTTKSEEVVISDIYHTFKGFGIFAEVDKRHSFGEIMQTMN IPEKLHKLTRLWLQVLVKEGVLREEEQTFALVEHNLHLDSGALWDEFYRIEEEFNYSR EFVDYLKKSSDVLPEMIQGQENPLNVLFPKGDVAPAMAAYHDNKINQIQNGIAVKEVL YLCRQANQKEPGRPFRILEVGAGVGGTSLDLIPQLEGRQVEYHFTDLSAFFLNHAQEN FRSYEWVNYGLFDINQDFALQGYEAFSFDLILCANVLHNARDIHEVMDNLKHLLVDRG TMIILEETRVSYMLLTSMEFKDGLTGFQDERGEEQTFFTRAQWEKIFSRHGGEIVFEF PGQDSKLDISGQTIYITRYAGEYEPLDKGRVQEHLANTVAPYMIPSTLLVLPALPLTD NKKVDMGRVRAYLEQNHQASGTEPGEKALPETELEKRIAVIWCRELKIASFGREDNFY EVGGDSLLIAQVVGKMVEEIEEAEGWEWSALLTEMMQTPTVKEVAAKIERFFSHRDTF IDPSLIQIKDSRLPREQSVAKVLFHAGTGTLSAYTDLIAYIEKDSKEDESVLGFSFGN EVDYISMETQDTFKLLGKKYGKILSSLGFANYILIGHCVGGVIALEAAEHLRESGHRV SDVTLISATIQMQKEMTHYRELPDQVYARALETSLDNELLLERTFARLINANEYEAGY TTQEADLERCIEFLVKERQGEVSAEALCSLDGPYQEIGDNFKELSRKPISERLNDLYA TIERSESNLMEHERRMLNTLFNIFSQNFGCVASHEPRPYGGQVRLFSCEQQEGSFFRE FFGENLETWLPYLQGEYTYEVIAGQHFDCIVEPNLQKNIGRILNFRY" gene complement(4213735..4217316) /locus_tag="Dhaf_3966" /db_xref="GeneID:7260986" CDS complement(4213735..4217316) /locus_tag="Dhaf_3966" /inference="protein motif:TFAM:TIGR01733" /note="TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: ckl:CKL_1505 predicted nonribosomal peptide synthetase" /codon_start=1 /transl_table=11 /product="amino acid adenylation domain protein" /protein_id="YP_002460415.1" /db_xref="GI:219669980" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR001242" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR006163" /db_xref="InterPro:IPR010071" /db_xref="InterPro:IPR013624" /db_xref="InterPro:IPR016160" /db_xref="GeneID:7260986" /translation="MEDKNPRTAAMEFVGQKVRDLLAAEQIAADSNLIEEGLSSLMIM QIAGGLRKYKLRISFAALIEKPTLRDWAELINKAKLKEAGQVPEGAVERVVEEAVEEA AGEAAAAERAVERTAGEPGGQFPLTDVQYAYWVGRNDDQPLGGVGCHAYLEFHGQSID PLRLKLAWNALQRHHPMLRAKFFPNGRQAIMPSPYSEEIEVFELGGLAPDELQEELLS LRSARSHRKLKVEEGEVAGLALALLPDGTGRLFLDVDLLVADVLSLSLIIRDLAEAYL GKRLGEPPEYTFQDYIRGREGEAENQEREEDKRFWEGKLQAMDWEGLRMPLQTKPELI SKTRFSRRQAIVGREDWQRIRQTAARYQSTPSMILLTAYALVLERWCSQGSFFINIPL FNRDLEDGRISAMVADFTNLLLVEFMKKPQETFLMTMERVKSTFLENVSHSGYSGVRV QRDHFGKMGGTGFVAPVVFACNIDYPLETPLSRRAFGGVGYMVSQTPQVWLDFQTYVR DEELMLCWDAVDELFPEGLVDDMFGALQDLIQGLAQHDDWNQGFDVLPPRQKAQRAGE LADLLPLSPPPKTLLSGFLSHVRQNPDSIALIDGRTQGSITYGELYRRALAVAGLLVR KGVQPGDYMGILLPRGCGQIYAILGILMAGGVYVPIGISQPEGRRQKLYRQIGLKGII THGETIPSGHPDHEGILVVELEEGMGKGGLEEGMGKGGPGVGTDKGGLEKPVMASPQD SAYVIMTSGSTGSPKGVEISHEGAVNTIEDINGKFGISARDSVLMVSAIDFDLSVYDL FGMLSEGGRVIVLDEENYKDPDVWLRLMQHYSLLVWNSVPVLFDMLVTMAERREAPLD LRLVMLSGDWIGLDLPRRFYELNRNATVVALGGATEASIWSNYQVVPERLPSDWITIP YGQPLKNQIYKVMDKWARVCPNYVAGELWIGGAGVAKGYKGDEELTGQKFKTDTIRWY KTGDSGRMWEDGTIELLGRLDNQIKIKGYRIETGEVESALMKLPGVANAVVCLSEENE DKVLAAYLVAKEKVKAEEKRYAEVEGVKEALAACLPHYMIPAVYVWAGELPLTVNGKP DKRQISELLKNRWQKTSFSPPEGALEGQIAKVWQEVLHKKELSRHDNFFKLGGDSLKA VEIVTKAGAVLKLPLTLSIQTLFRCPTLREFALEIAKLGSGYEEEII" gene complement(4217306..4218925) /locus_tag="Dhaf_3967" /db_xref="GeneID:7260987" CDS complement(4217306..4218925) /locus_tag="Dhaf_3967" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: ckl:CKL_1504 predicted aryl acid activating protein" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_002460416.1" /db_xref="GI:219669981" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR001917" /db_xref="GeneID:7260987" /translation="MTGNLKESLESFYAAKVWEDITLGKALSAWSETYGDNIALTEAD RQVTYRELETAARRMAAGWQRRGFGRGDKIVLQLPNSIEFVVSAFALFKLGVIPVMAL PAQRKTEIKGIIEKSGAKGYVIKEKYLGFDYKSLAREIRREIETDLAVIVIGRSDEFI AYEDLGEGPELRDEPEIGSGEVGLFLLSGGTTGIPKLIPRRHADYLYVAQKTAERCRL DQESVYLAALPVAHNFPLGCPGLLGTLSVGGRVVICAVASPDEIIPLIEEEGVTITGL VPALAHMCIEFLELDGECDISSLKVIQVGGAVLDSYLAARIEKAFACTLQQIFGIAEG LICCTDLADREEIRYHTQGKPISAYDEILIVDEKGQEVPEGEYGELTVRGPYTIYGYY NLEEVNQSCLSDQGYFKTGDKARWQDGNLQVAGRLKEMINRAGEKITPSELEELLLRH EDIEDVQVVGVEDQELGERICVFIMAQNKGLTLNALRNYLVGQQVASYKLPDQLVYLE AWPLTNVGKIDRNQLRVLGTQRGNQEVFHGR" gene complement(4219008..4219706) /locus_tag="Dhaf_3968" /db_xref="GeneID:7260988" CDS complement(4219008..4219706) /locus_tag="Dhaf_3968" /inference="protein motif:PFAM:PF01648" /note="PFAM: 4'-phosphopantetheinyl transferase; KEGG: cbb:CLD_1973 hypothetical protein" /codon_start=1 /transl_table=11 /product="4'-phosphopantetheinyl transferase" /protein_id="YP_002460417.1" /db_xref="GI:219669982" /db_xref="InterPro:IPR008278" /db_xref="GeneID:7260988" /translation="MNTDGERLKLYHITSNEKVAIPEVKDLLNKGIPQIFLVNTNRGE CRIESFRYLTREEEGLLGSYRQESDQNNYRVTHSIVNYIYANVLHCGIEELLFGRGKY QKPFISNDLNYHYNIAHSKNFALVGIHGRELGVDIESIDEGLDYKAIARDLFAQEDRE YIQREPGNFFRLWVAKEAYLKLRGTGFYSDLKELAVKGEEEGKIILLDKTSGSCHPVF MTEHLSCSIGFSCL" gene complement(4219703..4220443) /locus_tag="Dhaf_3969" /db_xref="GeneID:7260989" CDS complement(4219703..4220443) /locus_tag="Dhaf_3969" /inference="protein motif:PFAM:PF00975" /note="PFAM: Thioesterase; KEGG: ckl:CKL_1503 predicted thioesterase" /codon_start=1 /transl_table=11 /product="Thioesterase" /protein_id="YP_002460418.1" /db_xref="GI:219669983" /db_xref="InterPro:IPR001031" /db_xref="GeneID:7260989" /translation="MMSNPYFVRTFKGTAQNRLFLFPYAGGGASAFNPWQKHFTDTEI LPAHYPGRETRIKERPLESLTLLVEELWAGMEPLLRDGTPYYLFGHSPGTKVAYELAL LIQQSNVPCQSKGMIIAAGKAPCLKETHPIHQLDDAHFIREIGRFSATPAAILASPEL MSLFLPALRADFRLDETYHRREIEKVKCPILTLMGDQDPELTLDELLMWRNYTQGDFA VQTVAGAHMFILSNKEAVIKILQDYMGP" gene complement(4220571..4222295) /locus_tag="Dhaf_3970" /db_xref="GeneID:7260990" CDS complement(4220571..4222295) /locus_tag="Dhaf_3970" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pgn:PGN_1916 putative ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460419.1" /db_xref="GI:219669984" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7260990" /translation="MLKGMFALSDQGAKDLNKGIAATTLSNIVLILPVSLLILVVMEL LNGMGGETAGLQRTVSLMPLYGVLTVVLFVMVFATQWLQYNKTYTVAYQESANRRIVL AEKLRKLPLSFFGQKNLADLTATIMGDCTALERVFANAIPQLLGTVFMFILTVLGLVI LDWRLGLCIALPVPVAALVVIAARKAQQKAERANLDAKRTAYDGVQEYLETIGELKAC SREKEYLEGLEQKLDQVVRCSFRNELAPGAATTAAQFILRFGLVAVLLVGGYLVAKGS LSIPMFILFLLFAGRIYDPFTSCFMMLAEVFSSLVSVGRMKQIDATPEQTGDPVCNNQ GYDLEFDQVVFSYNDEPVLRGISFVAKQGEITALVGPSGSGKSTVSRLAARFWDADSG RITLGGVDITKVEPETLFRNFAIVFQDVMLFDDTVMENIRLGRREATDEEVRAAARAA QCEEFIEGLPEGYRTNIGENGSALSGGERQRISIARALLKDAPVVLLDEATASMDAES ETLVQEALSVLLENKTVMVIAHRMRTVANADKIVVLDNGHIREQGTPAQLINQGGLYA HLVSLQQI" gene complement(4222289..4224079) /locus_tag="Dhaf_3971" /db_xref="GeneID:7260991" CDS complement(4222289..4224079) /locus_tag="Dhaf_3971" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_3808 ABC transporter related" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460420.1" /db_xref="GI:219669985" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017940" /db_xref="GeneID:7260991" /translation="MNQQSSGIKRLLEFTGQSRGLLTLSRILSGISALFILGPFLCVY FAAKDLVNVFAGGSLDPESLVRWGVLALILELIGLALYFAALLCSHVVAFRTEKNLKM AVLTHLAKMPLGYFDRNPSGKLRKIIDDNSFQTQTFIAHQLPDLVGAQVTMAASLVLM LLFDWRVGLPLLLLFGVGFFLQGSLNGKESMKFMQSYQDALETMNHEAVEYIRGISVV KVFGQTVHSFSKFNAAIQSYRDDALAFTMSCKKGMVAFNSIVNSSFLVLVPAALLIGL VSPDLPGFMQSFLFYLIFSPACAVMLNKIMYMTSYKMQAEESMRRIDGILSAEPQREA ARPQTAGGHEISFADVTFRYEGTDHPAVSHLSFIAKPGTTTALVGHSGSGKSTTASLI PRFYDVQEGVIKIGGVDIREMASEDLMRKVAFVFQNPRLFKDTLLANIRAARPEATRE EALQAAHLAQCDDILAKLPQGIDTVVGSRGVYLSGGETQRIAIARAILKDAPIVLLDE ATAYADPESEQQIQQAFKGLTKGKTVVMIAHRLSTVRDAGQIVVMKQGGIVEKGTHDG LVAQGGEYARMWDNYQKSTQWHIGGEVRSC" gene complement(4224042..4224260) /locus_tag="Dhaf_3972" /db_xref="GeneID:7260992" CDS complement(4224042..4224260) /locus_tag="Dhaf_3972" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: LOC100064361; similar to hCG1647286" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460421.1" /db_xref="GI:219669986" /db_xref="GeneID:7260992" /translation="MKGSQVKGSQVKGSQVKGSQVKGSQVKGSQVKGSRVKDSQVKDS QVKDSKTERTIRTGECYESAIKRDKTAS" gene complement(4224257..4225906) /locus_tag="Dhaf_3973" /db_xref="GeneID:7260993" CDS complement(4224257..4225906) /locus_tag="Dhaf_3973" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH0567 nickel transport system (nickel-binding protein)" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_002460422.1" /db_xref="GI:219669987" /db_xref="InterPro:IPR000914" /db_xref="GeneID:7260993" /translation="MKMKRWLAVVLSGVLVFSLAACSQSVNNQGGAQTSGSGEQTVHL NLPESWGFESFYPVITPANSSSGYGITYYLTSFYDTLVTYDEKGELAGLLAEEWSVST DGKVYTFKIREGVKFSDGTPLTAEDVAQSLLAVPVNLGQYNGSYGKLSTIIADAVAKD DHTVELYLTQPYYSTLRDLCLANPFAIVSGEQLNEDLTAKTSFNTISYGTGPYMYGGD GDGKSYTFVRNPHYWGEQPDVDSFTIKVIADNDAKVLALKNGELDFMSGIAKISSESY QEMKNTKGFGAAVDKAPMQTYYLGYNLKNPLFAEKVVREAMAAAIDKGNIVDGIFGGI HEQADTFFAKSLPYCDMEQTTYEFDLAKANRLLDDAGYVDRDGDGIREINGTRLAADF VYQTESVANNDMVVYICDQLKKIGIELTPKSAPMMEWYAMITGGQYGVTVFKTQGGYY DPANIISAMNPSQSMDPIIMQAGEFLPDGVGLINEVNSTTDEARIQEIYTIILNTIAD NCLMTPLYYTHQVALYNDKVAGYNFPADAGFTSIQNIKAAK" sig_peptide complement(4224257..4224328) /locus_tag="Dhaf_3973" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.734 at residue 24" gene complement(4225910..4226734) /locus_tag="Dhaf_3974" /db_xref="GeneID:7260994" CDS complement(4225910..4226734) /locus_tag="Dhaf_3974" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1859 oligopeptide/dipeptide ABC transporter, ATPase subunit" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460423.1" /db_xref="GI:219669988" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260994" /translation="MIELRDLSCTFSGGILSREKLTAVSPLSVSFRKGGRYAIVGESG SGKTTLARMMAGLQKPDGGNVYVDGRPVFGRHRAGKSHFKQVQLIQQNSAAALNPKMT IGKAIEEPLLCFFRLSRQERRKRCEKLLDLCNLPADYYSRLPSELSGGEQKRVAIARA LAAEPACLIFDEATNGFDLPLRKKIMEEILDLQEKLRFTLIFITHDMELALAAADEVL VMRDSVLVEQVPFGGDYAVFQNQYTKVLLAASGMAEPINQYERYPEKNMKLLERNA" gene complement(4226740..4227510) /locus_tag="Dhaf_3975" /db_xref="GeneID:7260995" CDS complement(4226740..4227510) /locus_tag="Dhaf_3975" /inference="protein motif:PFAM:PF00005" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lsp:Bsph_1247 ABC transporter ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_002460424.1" /db_xref="GI:219669989" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:7260995" /translation="MSLEVRNLQISLAGGQRVAQDISFRIKKGEMLAVVGSSGAGKTT LCKAVMGLLGAGYKTEGVIDYGGENLLTLPGKRLAQIYGKDICYIMQNPMTAFNPSLR MGRQLEKTFLQHHPQGSRAEVFPRAAPILRRLGIEDTKRVWKSYPFALSGGMLQRMMI VAALMNDPRLLIADEVTTAIDACNRMELMKELRLLCHEGMSVLFVTHDLRSAACSDRI LIMNQGRTIESGPTEQIFNNPQEDYTKHLLLACQLERR" gene complement(4227500..4228318) /locus_tag="Dhaf_3976" /db_xref="GeneID:7260996" CDS complement(4227500..4228318) /locus_tag="Dhaf_3976" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease)" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002460425.1" /db_xref="GI:219669990" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7260996" /translation="MKRKKQILAGLILIGFFVLMASAAPWLAPNDPNATNLALKNGPP TAEFPLGCDQLGRCELSRLLYGARYSLGLSVPVLMILASFSLFAGSYASYRGGVWDGA VRILCDIFMAFPLIVIAMALVSTIDNSVVSIIVAIGISMTAWFLRMVRSYAKTECGKE YIESARISGASELRIVIRHLIPNVFPQFVVYFTTGIAAAIMSVSGFAFLGVGLIAGTP EWGAMLNEARNSMYTNPGLIVYPGICLIVCCAGFNLLGEGLRDTIGKEGEHHVA" sig_peptide complement(4227500..4227571) /locus_tag="Dhaf_3976" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.964 at residue 24" gene complement(4228315..4229268) /locus_tag="Dhaf_3977" /db_xref="GeneID:7260997" CDS complement(4228315..4229268) /locus_tag="Dhaf_3977" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_2005 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_002460426.1" /db_xref="GI:219669991" /db_xref="InterPro:IPR000515" /db_xref="GeneID:7260997" /translation="MLKGTSSGISVWQELLRLVVVIFGVITLSFCLQLFTGTDPAEMI VRKQNVFATEEQIQAVREELKLDAPFHVRYLDYLGGVVQGDLGTAIMNRRPVAENIRE VLPVTTILIVLAMLWVVLFSIMIAAASVLRKDKAFDNVTRIVCIIGICVPSFWLGLIL LTVFAVRMPVFQVIADGSLKSFILPSVAMAFPITCISIRVLRASVLNELNSDYVTYAR ARGFTNGQIIYGEVLKNALPPAITLFAQYCAALFGTSALVESVFSIRGLGIYLMESCE SMDVYGISGSILVCAVLFVLFNMAADLLSSAVCPAYGRKRI" gene complement(4229471..4230427) /locus_tag="Dhaf_3978" /db_xref="GeneID:7260998" CDS complement(4229471..4230427) /locus_tag="Dhaf_3978" /inference="protein motif:PFAM:PF00165" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD0428 AraC family transcription regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002460427.1" /db_xref="GI:219669992" /db_xref="InterPro:IPR000005" /db_xref="GeneID:7260998" /translation="MSNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPG IQMSFNHLMMDSTFQAITPIKKFLQIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLSR QVFVSSRLPLRKYRGVTLFLEVEKAQHTLGARFPQAEINLAGMVDELCAKEQSLLVKS RGDVDRIFSKLSDVDERIQAPYYWLKTIELLLFLSVLDEGQRQPLKIFSGEVARGTKA VYHYILQNPLAKVTISELASQFDITESSLKRCFRSISGSSIGTFMKAKRMEAAAELLT AGEKLSIGEIAEAAGYENQSKFSAAFKSVYGVTPLLYQNRHL" gene 4231025..4232071 /locus_tag="Dhaf_3979" /db_xref="GeneID:7260999" CDS 4231025..4232071 /locus_tag="Dhaf_3979" /inference="protein motif:PFAM:PF00072" /note="PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: aoe:Clos_2472 two component AraC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, AraC family" /protein_id="YP_002460428.1" /db_xref="GI:219669993" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR001789" /db_xref="GeneID:7260999" /translation="MYTVLVADDKEVFRRKVKRMPYFQDHKEKFAIRYEAQNGLEALE ILRSHDVDMVLTDIRMPFIDGIELLKHVNAENLCKCVILLSEFAEFNYAKAGILNGAF DYVLKPVDDEKIQETFDRAYNYLTTINAAVNAQTQRIETLARLMLAGDRMNALAYAKH IGAGLQAHGAITGERIVQANDTLAQLNKYILQKRPFLHYYLPFDELCCLDAKKTTPGK ISDAFNACVSTVMDAIEPFCVQSTNELVGRTCQLVLEKLDSKVSLHGIADNLYVNPKY LGALFKKETGRSFVDYVTFARMERAKMLLRNPTLKVYEVAAQLGYDDVDYFSKVFKKL TAESPSIYREMRKQ" gene 4232092..4234071 /locus_tag="Dhaf_3980" /db_xref="GeneID:7261000" CDS 4232092..4234071 /locus_tag="Dhaf_3980" /inference="protein motif:PFAM:PF02518" /note="PFAM: Extracellular ligand-binding receptor; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bpy:Bphyt_5759 putative UreA/short-chain amide transport system substrate-binding protein precursor" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_002460429.1" /db_xref="GI:219669994" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:7261000" /translation="MENRRRENQGVSTDPDKTALMQAYEDLNSFIYTISHELKTPARE ISLYAEFIEEDNKANLLPQSVEDIRSIRRTCDSMTMMVQRLMEYSKAGFKIIEQQQIS AALLVRQCFDEIMRSVPGRKVELTVGDLPEIMGDLFLIKLMMTNILSNSIKFTREKAN ARINVTAKILEDTLEFHFRDNGIGFDMAYAGRIFEAFQRLQDEDAYEGSGIGLATVKK IAQRFGGDASIIGWPGKGCEVCVSFPGSLLKTPRDNRESERDVIKVGIIGDFTGICSE LERGKVAAYKLAADEINRMGGINEKKVELLFRDDRSLSELTREAVKELTEEERVDVLM GSTLSPSREIMQHYADQTKTLYLDTQQTEGGVSSHYTFCLSAMPEQQMTQMLAYLLQK YGRKCYVVAADYNYGILSAEWVKYLVHQLGGEIVGVEYLDDRITDFNPLIDRILQLEA DILFSICVFPNHDAFYLQWHQRGLNHIPNASTMVAAEAYQNVRFAPPVLENMYVMASF IEELNTPAAQRFVKKFRAAYDHREVPYMSMDTETVYTAMYVYKRAVELAGTTDTEEVI TALESGAVYVDGPGGRVTVRGEDHHTSRSLSCFRINNQHRAEELFCTNPIHSDYIESM IEQTMGVKGGIKAMGANAPSTQYNMLLNKFRWHPS" gene 4234392..4235327 /locus_tag="Dhaf_3981" /db_xref="GeneID:7261001" CDS 4234392..4235327 /locus_tag="Dhaf_3981" /inference="protein motif:PFAM:PF03069" /note="PFAM: Acetamidase/Formamidase; KEGG: azc:AZC_3884 acetamidase" /codon_start=1 /transl_table=11 /product="Acetamidase/Formamidase" /protein_id="YP_002460430.1" /db_xref="GI:219669995" /db_xref="InterPro:IPR004304" /db_xref="GeneID:7261001" /translation="MAHYEVKPSFYNYVFSPYLEPAIKVNPGDTVSLYTDDAFESRIT SEDVSPKAAVRNAKFLNPQSGPVYINGAEPGDTLAVHFESIEFTRDWAVSCVMEYFGG LQSNSITKMLQKPLVEEVYIWKSKDKGQTWTNDKIGVTIPANPFCGTLATAPDTEAIQ ALTPGQFGGNMDCPDICPGHTIYLPVHNPGALFYIGDCHAAQGQGELCGVALEISAKA TLKFDVIKNKVTNWPRIESPEKIMSVGSAKPMEDAARIAYADLIDWMVSDYGFKVLDA YELLTMVGGLYVANMVDTTYSLCASIEKKYLKRNS" gene 4235383..4236624 /locus_tag="Dhaf_3982" /db_xref="GeneID:7261002" CDS 4235383..4236624 /locus_tag="Dhaf_3982" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: bid:Bind_2435 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_002460431.1" /db_xref="GI:219669996" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:7261002" /translation="MAPEKQLNPSYRWVILAINFIICAMAYAGLTMWGMASTDLASTF NITPVQASLGAALLMAGYAVGSYVEANLTSKVGYRGAGLLGLVLMTIGTIGIPMAGNY NLILLLRFLQGWGILWLVGVNSSVAWFPAKQRGLASGVIGGGLTLGIGCGGWVATVLM AAAGTWQGAFRIWGIILCVSTIIWALLMKEPPKGLYPEDAAHSVSSGPQKKINPFATA ACWLCILILFFNCWQLIGFNSIVANYLKDVGFTAAQASTVVLLAGLIGVASTPIGGAI SDRLVQKGWKPLKARAFTTAVPGFLVAAVATAIFPFLAQISFGVACLMALFVGWGVPV TNATSGALPMDLLQNEDAAGRMFGANILVGIGGGGILAPIIAAALAESMGWTACFMVL AAGAAAGTVISLILPRFKLEH" sig_peptide 4235383..4235508 /locus_tag="Dhaf_3982" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.601) with cleavage site probability 0.369 at residue 42" gene complement(4237283..4238158) /locus_tag="Dhaf_3983" /db_xref="GeneID:7261003" CDS complement(4237283..4238158) /locus_tag="Dhaf_3983" /inference="protein motif:PFAM:PF06445" /note="PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD2419 AraC family transcription regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_002460432.1" /db_xref="GI:219669997" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR010499" /db_xref="GeneID:7261003" /translation="MDYRKALEHAVMYIENHLGSDIKVEDVAKAAGYSYYHLNRQFTA ILGESIGSYIKKRRLADAAKKILYTNRKIIDIAMENGFESPEAFSRAFKAIYKVSPQT YRQNRLDTFIAGKERLDSGLLDHLARNVTVHPKIVELPEIKVAGLRGETTLRDNRLRE LWDRANSLYIQIPNRIPNGRAFGICEACAENTLYTMNDDILFTEVAGIEVSSFAGLTE PFVQKIIPGGRYAVFTHRGTLGMLPQTFDYIWGTWFLTTKEEMDWREDFELYDERFLG YDHPDSEVDLYIPIR" gene complement(4238177..4239295) /locus_tag="Dhaf_3984" /db_xref="GeneID:7261004" CDS complement(4238177..4239295) /locus_tag="Dhaf_3984" /inference="protein motif:PFAM:PF03417" /note="PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: cdf:CD2420 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase" /protein_id="YP_002460433.1" /db_xref="GI:219669998" /db_xref="InterPro:IPR005079" /db_xref="GeneID:7261004" /translation="MLTIQTHTAEFTGTNYEIGYQLGKLTAAIPPLRAAHTAGMENFG PKQAEEAAKLFDRWCPGLTDELRGFADALAVKPEGVFFYGMTYLLPRCSHIALLPGLT AERKPLLARNYEFSHEAEDFCLTKTSVTGKYTHMGTSVLHFGRDDGFNEHGLAITISS CGFPVGALPTMRAPKLKGLQFWAVIRALLENCKDVSESLEYLEGMPIAYNLNMILMDK AGNAALFETLDGLSAVKRIGPDPAEQMLYVTNHPVLPELKSMEPQVMAHSARRYDYIQ EQLAGRDRITKEQLKKMLLAKYPDGLCCHYFEEFFGTTKSMVISPADGRIDLCWGGRA ENGWHIYDITQHLENQTKAIQINMEKALPETYAWQPLC" gene complement(4239712..4240005) /locus_tag="Dhaf_3985" /db_xref="GeneID:7261005" CDS complement(4239712..4240005) /locus_tag="Dhaf_3985" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460434.1" /db_xref="GI:219669999" /db_xref="GeneID:7261005" /translation="MKIVIQFCVDADIIDCPVDISDSLIEYRNKFIDWLYDKQNNHSY WIYKNGEKYGCSYRSEAFVEWLNKFVLSNSLVKAKVLESNVKNWDNSLLSTGF" gene complement(4240433..4240921) /locus_tag="Dhaf_3986" /db_xref="GeneID:7261006" CDS complement(4240433..4240921) /locus_tag="Dhaf_3986" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: amt:Amet_2130 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002460435.1" /db_xref="GI:219670000" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7261006" /translation="MSKYLIREIQPHELGILEDMLYEAIFQPDENNLLPREVIKQPKI GVYIDNWGKPDDLCLVADVDRKIIGAVWTRILAGNIKGYGNIDDQTPEFAISLFKEYR GKGIGTVLMKMMIEKLKEHGYKWASLSVAKDNYALKMYKNVGFEIFAEQEDDYLMLLD LN" gene complement(4240964..4241128) /locus_tag="Dhaf_3987" /db_xref="GeneID:7261007" CDS complement(4240964..4241128) /locus_tag="Dhaf_3987" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460436.1" /db_xref="GI:219670001" /db_xref="GeneID:7261007" /translation="MMQNMGGFIGGLGYLSISLGFIKSILEVLLYISAIIALFKAIQA LNIYINKNSR" gene complement(4241237..4241833) /locus_tag="Dhaf_3988" /db_xref="GeneID:7261008" CDS complement(4241237..4241833) /locus_tag="Dhaf_3988" /inference="protein motif:PFAM:PF04892" /note="PFAM: VanZ family protein; KEGG: bwe:BcerKBAB4_2484 VanZ family protein" /codon_start=1 /transl_table=11 /product="VanZ family protein" /protein_id="YP_002460437.1" /db_xref="GI:219670002" /db_xref="InterPro:IPR006976" /db_xref="GeneID:7261008" /translation="MFEVIVFGVLFGGVPWVVLRGIFLLWSKNYKNISIRRELLVMAF VIYYLAVIRVTIFSLHPSSSYGQGGTPSVNIIPFTEMFRGFHPNHFTFGYMIRHLESN LIGNILLLLPLGFFLPTLWSRFRSFKRTVLIGILSSLSIETVQYILAYLGLSSGRASD IDDVILNSIGVIIGYMVFQVIYYGIRCFRRYSTFTKVD" gene complement(4242037..4242654) /locus_tag="Dhaf_3989" /db_xref="GeneID:7261009" CDS complement(4242037..4242654) /locus_tag="Dhaf_3989" /inference="protein motif:PFAM:PF01966" /note="PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bce:BC2499 HAD superfamily hydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_002460438.1" /db_xref="GI:219670003" /db_xref="InterPro:IPR005249" /db_xref="InterPro:IPR006674" /db_xref="GeneID:7261009" /translation="MHKSLSNAFEGFSFSGDITTDVLGLLHHHGRQDVAKHVLAVAKT AQRLAPIYDVDSEAAYSAGLLHDISLIFSTSQMLQTALDLGLEPVTAEKRVPYLLHGK LSAAMAEIVFGVKNDSLVHAVSCHTTLCARATTLDKVVFLADKMSWDQEYSPFKPELE TALEKSLDEAVGVFLTWTWKQKEKLNSIHPWLIDAWKDYKVGDYA" gene complement(4242812..4243021) /locus_tag="Dhaf_3990" /db_xref="GeneID:7261010" CDS complement(4242812..4243021) /locus_tag="Dhaf_3990" /inference="similar to AA sequence:KEGG:CKL_0582" /note="KEGG: ckl:CKL_0582 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460439.1" /db_xref="GI:219670004" /db_xref="GeneID:7261010" /translation="MDIKDEQDKHEKRKREEYEKKPMINFADSVNRAQFGDLRGLTQG GCLNQIFTTVIIIVVLFFLFQFINK" gene complement(4243118..4243576) /locus_tag="Dhaf_3991" /db_xref="GeneID:7261011" CDS complement(4243118..4243576) /locus_tag="Dhaf_3991" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: amt:Amet_1420 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_002460440.1" /db_xref="GI:219670005" /db_xref="InterPro:IPR000182" /db_xref="GeneID:7261011" /translation="MRIISIRQEPDYKEVAARYIHSKWGNETNYPLYQDSIFGCVSIG ESVPYWYLLEDDEHIIGCIGLIDHDFISRPDLSPWLCSLYIEEPYRGKGLGALLIEQV KKDAEQEGFKKIYLCTELNGFYEKYDFHYIGEGFYPNGDSSKVYEANLDE" gene complement(4243911..4244228) /locus_tag="Dhaf_3992" /db_xref="GeneID:7261012" CDS complement(4243911..4244228) /locus_tag="Dhaf_3992" /inference="similar to AA sequence:KEGG:GK0437" /note="KEGG: gka:GK0437 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460441.1" /db_xref="GI:219670006" /db_xref="GeneID:7261012" /translation="MKKGIILTASVLALSLALVGCSNVEVSVEKKEVSVEEKDQNTLS VESVQLERKVIIRNSIADPLPAEAQKALSLPGKGGPQQLPNVDLSTPIIITKMPYPEI NKP" sig_peptide complement(4243911..4243985) /locus_tag="Dhaf_3992" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.438 at residue 25" gene complement(4244459..4245808) /locus_tag="Dhaf_3993" /db_xref="GeneID:7261013" CDS complement(4244459..4245808) /locus_tag="Dhaf_3993" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_2566 radical SAM family protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_002460442.1" /db_xref="GI:219670007" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:7261013" /translation="MPTLLMITPENSEINKFKAHQLNNFTQLTMPYLAGFVPEEYSIR LLDEYTEPILFEKVDLVAITVNTPNAPHVYSVSKRFRELGAWVALGGPHVTLNPEEAA CHGDTIFVGEAEETWPEFLKDFLSGNMQKVYTSLQVPSLDGLPIPRRDLIVGHRFTSG AVFASRGCPHHCSYCSLKKIYHNKLRTRPVDEVIKDIGSMPNKYFVFWDDNFFADPVY TKALLKELARLNKRWAAQVTAYSCEDEELLSLAKSAGCLYLFLGLESFSEQGLRDANK NFNKIEEYGKVVNKLHRHGISIQAGIVFGFDSDTLDVFETTLKACNKIGVDGVTASIL TPFPGTSIYEQYKKEGRLLDVDWDHYNGKTRVAYVPKRMNCKELLNGYNEFRGKFHSW RSIVKRISKSRVNIFYSLAMNYGYKRAYRNFTRLGIGERSDESLGQRMEQHLRNWPR" gene complement(4245994..4246113) /locus_tag="Dhaf_3994" /db_xref="GeneID:7261014" CDS complement(4245994..4246113) /locus_tag="Dhaf_3994" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460443.1" /db_xref="GI:219670008" /db_xref="GeneID:7261014" /translation="MDFGVIDPKSEMYALLGLDLLMSVGVVINLKDLTLTFDA" gene complement(4246157..4246696) /locus_tag="Dhaf_3995" /pseudo /db_xref="GeneID:7261015" repeat_region 4247004..4248596 /note="ISDha4" gene 4247181..4248425 /locus_tag="Dhaf_3996" /db_xref="GeneID:7261016" CDS 4247181..4248425 /locus_tag="Dhaf_3996" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: drm:Dred_0862 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_002460444.1" /db_xref="GI:219670009" /db_xref="InterPro:IPR002559" /db_xref="GeneID:7261016" /translation="MQDKDTTQSTFTQVFQPFFSKDLWRKIDQEVPNLDQRNYKLKTN QLTLLISHAQLQEYKALRKISSNVQSNDFSEAIGLESISHSQISRRLRTLPIKVSEML FKGVLNKVAQKKGDGKIQQRLGKLYMIDASVISLCLSRFPWAVFRKTKAGVKMHLRLS FDEMAIPDEVIITPAKTADRKKLDELIVVDKDALTIFDRGYIDYLLFDEYCEKEIRFV TRLKNNAVIEFTGVERPVEEEGSIEEDVDIILGTGTRKMKHTLREVTIDDNVNEPFTI LTNDFDLSAEELGEVYRYRWQIELFFKWLKQHAQIKHFYGTSEAAVINQIRLDLMTYC TLILLKLEVEHQRDLLTLQRMLIACLYESYDEFLGKLRRRRRKGSKRIKHDTIYQMTD HYIMAEEDTEWLNDLIYDPVIL" gene 4248662..4248961 /locus_tag="Dhaf_3997" /pseudo /db_xref="GeneID:7261017" gene 4249401..4249571 /locus_tag="Dhaf_3998" /pseudo /db_xref="GeneID:7261018" gene complement(4249774..4250730) /locus_tag="Dhaf_3999" /db_xref="GeneID:7261019" CDS complement(4249774..4250730) /locus_tag="Dhaf_3999" /inference="protein motif:PFAM:PF02737" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ckl:CKL_2795 Hbd2" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding" /protein_id="YP_002460445.1" /db_xref="GI:219670010" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="InterPro:IPR006180" /db_xref="GeneID:7261019" /translation="MNVEGIGRICNLGTGTVGPGITLTFALAGYEVNMYGRSNDSIKR GMNAITDMLKKFREHGLVKDSDIPEIIGRIKGVTTLEEAADGVDFVIESIVENLSAKQ EIFAKMERLCLVNTIFASSTSGLTTSAIAESLEYKERFIVAHFWNPPHLIPLVEIVPG QYTSQNTTNITSKLLLKIGKKPVILKKEALGFIGNRLQFAMLREALSLIDSGVATKEA IDTTIKYALGRRLSTTGPLESADLSGLDIIYDISSYLFKDLCNDTSVSHTLTAPIDEG RLGTKTGSGFYEWTPNSLSKISKVREDNLIEWLKKDRNGYLE" gene complement(4250930..4251475) /locus_tag="Dhaf_4000" /db_xref="GeneID:7261020" CDS complement(4250930..4251475) /locus_tag="Dhaf_4000" /inference="protein motif:PFAM:PF01872" /note="PFAM: bifunctional deaminase-reductase domain protein; KEGG: rca:Rcas_1055 deaminase-reductase domain-containing protein" /codon_start=1 /transl_table=11 /product="bifunctional deaminase-reductase domain protein" /protein_id="YP_002460446.1" /db_xref="GI:219670011" /db_xref="InterPro:IPR002734" /db_xref="GeneID:7261020" /translation="MRRVRYQVACSMDGYIAAPNDGFDWITPEPSFDFEALYAQFDTL LMGRRTYEIVRATGESFRGKQVIVASRSLRPVDHPDVEIVSEGLEARVRELRGQPGRD IWLYGGGNLFSQLLAWNLVDTFEPAIIPILLGGGVQLLPPHGIRRCLELVRHRAYPSG MLLLEYKVQQAGEGTNEFSRG" gene 4251637..4251807 /locus_tag="Dhaf_4001" /db_xref="GeneID:7261021" CDS 4251637..4251807 /locus_tag="Dhaf_4001" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460447.1" /db_xref="GI:219670012" /db_xref="GeneID:7261021" /translation="MDKDKAKAEGDVDMAIPKEPKDSAQPNSSNEHKRQVAKALKEVT SDHSKLLKKLAE" gene 4251908..4252222 /locus_tag="Dhaf_4002" /db_xref="GeneID:7261022" CDS 4251908..4252222 /locus_tag="Dhaf_4002" /inference="protein motif:PFAM:PF02661" /note="PFAM: filamentation induced by cAMP protein Fic; KEGG: lsl:LSL_1388 death on curing protein" /codon_start=1 /transl_table=11 /product="filamentation induced by cAMP protein Fic" /protein_id="YP_002460448.1" /db_xref="GI:219670013" /db_xref="InterPro:IPR003812" /db_xref="GeneID:7261022" /translation="MSKIRSILDQQYPHFDHEKYPTVYEKAAMLWYFLTKNHCFVDGN KRVGFYAASILLKINGYSDNVDDDEAYAKAIQISCSQLTGKALDTYILELSHWLKERF PK" gene complement(4252322..4252423) /locus_tag="Dhaf_4003" /db_xref="GeneID:7261023" CDS complement(4252322..4252423) /locus_tag="Dhaf_4003" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460449.1" /db_xref="GI:219670014" /db_xref="GeneID:7261023" /translation="MDMKDEQDKHEKHKREEYEKHPMINFVDSVNRS" gene 4252594..4252794 /locus_tag="Dhaf_4004" /db_xref="GeneID:7261024" CDS 4252594..4252794 /locus_tag="Dhaf_4004" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460450.1" /db_xref="GI:219670015" /db_xref="GeneID:7261024" /translation="MNNEGNHFEPKEEETLSAVTKEQGYKKLSLTPKQLEKATVKPLA IKNGKLLFDKSNKDHRYIVEEE" gene complement(4252985..4253365) /locus_tag="Dhaf_4005" /db_xref="GeneID:7261025" CDS complement(4252985..4253365) /locus_tag="Dhaf_4005" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460451.1" /db_xref="GI:219670016" /db_xref="GeneID:7261025" /translation="MKGMIQSFREMTIIGRVGVLVGIVASVSGIALSVILCLFNPYVG GTAKETIPVALFGLGLPALMVGVASLYGMFWLSCVAFIYSLPLSLYLAGTPGLFRFFL PVSIGYLILAITLRVDQKLRNVRH" gene complement(4253605..4253772) /locus_tag="Dhaf_4006" /db_xref="GeneID:7261026" CDS complement(4253605..4253772) /locus_tag="Dhaf_4006" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460452.1" /db_xref="GI:219670017" /db_xref="GeneID:7261026" /translation="MTDYKRMYFQLAAKVADAMDILLKAQQEGEKEFMDGESLSEGKV MVIPEERGECD" gene complement(4254462..4255289) /locus_tag="Dhaf_4007" /db_xref="GeneID:7261027" CDS complement(4254462..4255289) /locus_tag="Dhaf_4007" /inference="protein motif:PFAM:PF00588" /note="PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bth:BT_4513 putative rRNA methylase" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase (SpoU)" /protein_id="YP_002460453.1" /db_xref="GI:219670018" /db_xref="InterPro:IPR001537" /db_xref="GeneID:7261027" /translation="MSNIIEISDFSLPNLDVFARLTETQLRNRLEPEMGIFIAESTKV IGLALDAGCEPISLLMERKYIAGQARGIITRCGDIPVYTADRNLLAGLTGFQLTRGVL CAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGAIFRSAAALGIDAVLLTPSCCDPL CRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRKLGFKTVAMALNDKAVSIDDSQ LMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVDSLNVAAASAVAFWQLRVR" gene complement(4255413..4256090) /locus_tag="Dhaf_4008" /db_xref="GeneID:7261028" CDS complement(4255413..4256090) /locus_tag="Dhaf_4008" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: apa:APP7_1812 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460454.1" /db_xref="GI:219670019" /db_xref="GeneID:7261028" /translation="MEKIIEFNINQKIFDLIRRRIKTKSQLIELLIEVSSLIIVNIPL RDNGFGKISINLDNMKRCFFSIQNSDSYICKHFTFNFPFRISEENGIYQLETFNGGIM IKSSHIAILRSICSNGAFDERECRHGLLLDFSQLIELTLIDLNLDIKSYERDLNQILM ELFTFEPSYIRYDYDEKNEDGKIHPLNHLDIFYSQSTSFKLGCERLELKEFMDILNTG TECSYIK" gene complement(4256074..4258107) /locus_tag="Dhaf_4009" /db_xref="GeneID:7261029" CDS complement(4256074..4258107) /locus_tag="Dhaf_4009" /inference="similar to AA sequence:KEGG:NMC0940" /note="KEGG: nmc:NMC0940 putative ATP-dependent helicase" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase" /protein_id="YP_002460455.1" /db_xref="GI:219670020" /db_xref="GeneID:7261029" /translation="MSKNYFYSQVEINEENALLIEALRTFANDNSIQTYAILEPLGEE KYNYDYKNVVNVLIPGYKILIVNVGKSNDEKFEYFCEDFIEDLSHLSDKFTYKDKIGR PRDWKRNQIELINYENFDAEDFIEKINIYKLSNPVQKRISELLISLLIGSINPIVNIG IDEPENILDKVKQKIVLFDSDQTRFIFEKVNERRIVIQGLAGTGKTELLLHKLKELYV RESKSKISFTCHSKTLSSNLRMRVPQFFTFMRVEEQIQWNERLWVHGSWGSQNYPHSG LYALICNRYGIPFQRYSRGKTFAGICADAVKFLKQRKVNGDLEPYFDYILIDESQDFT EEFFELCEMVTKKAVYIAGDIFQNIFDNDYSKVDPDFLLNKCYRTDPRTLMFSHAIGL ALFERPVVNWLSDREWEACGYQIRKNNDNYRLTREKIRRFEDIEDMQEIKPVELYCVE YDNILNKIISLIGEIKAKHSTVKPDDIAIVFVDDSNSIYRMIDVLGVLIRNEFNWEIN RGYDNKGQIEDTLFISNRNNIKGLEFPFLICVVTNEIEKNIKSRNTLYMTLTRSFISS YLVMSTYNSDLFEIWNPQLEGIIKDNSLSIVRPEPEDIMSKEQLQINDPTYKTYQEIV EELFLEFKIPIKKREKMLKILDAYATDDSEILEEGLIRMIIEKNLELINGKDN" gene complement(4258405..4258863) /locus_tag="Dhaf_4010" /db_xref="GeneID:7261030" CDS complement(4258405..4258863) /locus_tag="Dhaf_4010" /inference="similar to AA sequence:KEGG:MM_3347" /note="KEGG: mma:MM_3347 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460456.1" /db_xref="GI:219670021" /db_xref="GeneID:7261030" /translation="MFFISADPKGKVYHDLIDLAFECCDEFILVLRQDMYVSQNAKNV LERLSPSLIEVKEQYEWPGTLLGGGRPALVYYFRTDKQAKRIIKKASNSLHSWVQPAL PEDLSFRKGEVLWLVNTSHEASSSLIINNKDDVDKFLNIRNLESIEYHKK" gene complement(4259141..4260184) /locus_tag="Dhaf_4011" /db_xref="GeneID:7261031" CDS complement(4259141..4260184) /locus_tag="Dhaf_4011" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: ctc:CTC01084 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002460457.1" /db_xref="GI:219670022" /db_xref="GeneID:7261031" /translation="MELYKLYFKRVPMKGFYLACEIAKRAFKYTILENLFPDDDSENH EVIFTEEQIHEMELLLGCYSNFPNRQTLSGIDIFNMDIRKIEGFCFYDGNLSLHNFGG ANRMPGYIHSESLEIAHFYNVQTKMLFEEEHEQCREVIGILKERLSFATDAELAKFLR HEYMIPMQREYRKCTSYLSNIKMKHTLQRLIGEGYNLNMSDSNYWLLSEVFKKERKKI REELDLLYEGLLITRNLPKQWKSEFELYKLVKKHFEDARFQYSPDWLSPQRYDIFIPS LNIAIEYQGIQHFQSVDFFGGEEGYQHRLALDEKKKLKSKSNGIKIIEWLFTESISKM VLDGKIKQVLDTY" gene complement(4260623..4261228) /gene="pyrE" /locus_tag="Dhaf_4012" /db_xref="GeneID:7261032" CDS complement(4260623..4261228) /gene="pyrE" /locus_tag="Dhaf_4012" /EC_number="2.4.2.10" /inference="protein motif:TFAM:TIGR01367" /note="involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="YP_002460458.1" /db_xref="GI:219670023" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR006273" /db_xref="GeneID:7261032" /translation="MTVSNKSLSPEEVLNIFKESEALLEGHFRLTSGRHSRQYMQCAK VLQYPHHAARLGEALAESFRGQGIDLVIGPAMGGILVAHEVGKALGTKAIFTERENGE MKLRRGFELQPGQKVLVVEDVITTGGSVREVIEVVKAYGAEPVGVGVLVNRSGGKADF GVPLASLLEIEIESFDPESCPLCAEGIPAVKPGSRAVPTGE" gene complement(4261272..4262000)