Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082774

Identifier: 99082774

GI number: 99082774

Start: 3102377

End: 3103309

Strand: Direct

Name: 99082774

Synonym: TM1040_2934

Alternate gene names: NA

Gene position: 3102377-3103309 (Clockwise)

Preceding gene: 99082773

Following gene: 99082775

Centisome position: 96.92

GC content: 57.77

Gene sequence:

>933_bases
ATGAAACTGCGTAACCTTTTGCCATTGCTCGGCCTCATGGCATCTGCAGCGCATGCTGATGCCGTCACCATCCAAAGCTG
CGGCGTCTCTCAAGTGTTCGATAAAACGCCGAGCCGCGCGATCACGCTCAACCAGCAGGCAACCGAAGTCATGCTGGCGC
TGGGCCTGCAGGAAGCGATGGTTGGAACCGCGTACATTGACGACGCGATTCCCGCGCAATGGAACGACGCCTACGAGAGC
GTGCCGGTTCTGGCTGAAAAATACCCAGCCGCAGAGGTGGTATTGGCGCAGGAACCGGACTTTTTGTTTGCCGGCTTTGG
ATCGGCGTTTTCTGAGGACAATCTCGGTGCCGCCGAGAAATGGCACGACCTCGGGATTGGCACCTATCTTGTGGATGCCT
CCTGCAAGGACAAACACCTTCAGGACGTGCCCTTGACCGTTGCCCCGATCTTTGAAGATATTGAAACTGTTGGAAAAATA
TTCAACGTAGAAGACCGTGCGAACGCATTGATCGATACCCTTCAACAGCGGTTGGACTCTGTCAAAGCAGCGCCGTCCGG
GGCGGGGCAGACTGCCTTCATCTATGATAGCGGCGCAGAGACGCCTTTCTCCATCGGGTGTTGTGGCGGGCCTGCGCTGC
TGGCGTCGCTCACGGGGCTTCAGAGCATCAGCAGCGATGTGCCCGGCACTTGGGTCGATCTCTCTTGGGAGCATGTGGTT
GCCGCAGACCCGGATGTGATCCTGTTGATCGAGGCGGATTGGTCGACCGCCGCAGAAAAACGCGCGCACATGGAAGCGGA
CCCAGTATTGAGCGCGTTGCGCGCGGTCAAAGAGGGGCGTTTTGTAACCGTCCCCTTCTCGGAAACGCTGTTGGGGATGC
GCTTTGCCGATGGCGTGGAGACGGTGAACAATCAACTTGCAAAGCTGCCGTAA

Upstream 100 bases:

>100_bases
CGGGTTCCGGATCTCTCGGAGATCCAGCGTTTTGTCAAAACCGTCCTTGTGCAGGGCGGTAGGCTTGAACATCTCATTTT
CCATCAAACGGGAGTCTCCC

Downstream 100 bases:

>100_bases
ATGCGTCGCGGATCGCCCCTGTTGCTGCCAGCCTCTGGTCTGGCGCTGTTGCTTGCGATGGCCGCAGGGGTGCTCTGGGG
CACTGCTGACATCAGCTGGG

Product: periplasmic binding protein

Products: NA

Alternate protein names: Iron Transport Lipoprotein; ABC Transporter; Iron ABC Transporter; Transporter Subunit; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Iron Compound ABC Transporter

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKLRNLLPLLGLMASAAHADAVTIQSCGVSQVFDKTPSRAITLNQQATEVMLALGLQEAMVGTAYIDDAIPAQWNDAYES
VPVLAEKYPAAEVVLAQEPDFLFAGFGSAFSEDNLGAAEKWHDLGIGTYLVDASCKDKHLQDVPLTVAPIFEDIETVGKI
FNVEDRANALIDTLQQRLDSVKAAPSGAGQTAFIYDSGAETPFSIGCCGGPALLASLTGLQSISSDVPGTWVDLSWEHVV
AADPDVILLIEADWSTAAEKRAHMEADPVLSALRAVKEGRFVTVPFSETLLGMRFADGVETVNNQLAKLP

Sequences:

>Translated_310_residues
MKLRNLLPLLGLMASAAHADAVTIQSCGVSQVFDKTPSRAITLNQQATEVMLALGLQEAMVGTAYIDDAIPAQWNDAYES
VPVLAEKYPAAEVVLAQEPDFLFAGFGSAFSEDNLGAAEKWHDLGIGTYLVDASCKDKHLQDVPLTVAPIFEDIETVGKI
FNVEDRANALIDTLQQRLDSVKAAPSGAGQTAFIYDSGAETPFSIGCCGGPALLASLTGLQSISSDVPGTWVDLSWEHVV
AADPDVILLIEADWSTAAEKRAHMEADPVLSALRAVKEGRFVTVPFSETLLGMRFADGVETVNNQLAKLP
>Mature_310_residues
MKLRNLLPLLGLMASAAHADAVTIQSCGVSQVFDKTPSRAITLNQQATEVMLALGLQEAMVGTAYIDDAIPAQWNDAYES
VPVLAEKYPAAEVVLAQEPDFLFAGFGSAFSEDNLGAAEKWHDLGIGTYLVDASCKDKHLQDVPLTVAPIFEDIETVGKI
FNVEDRANALIDTLQQRLDSVKAAPSGAGQTAFIYDSGAETPFSIGCCGGPALLASLTGLQSISSDVPGTWVDLSWEHVV
AADPDVILLIEADWSTAAEKRAHMEADPVLSALRAVKEGRFVTVPFSETLLGMRFADGVETVNNQLAKLP

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33033; Mature: 33033

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRNLLPLLGLMASAAHADAVTIQSCGVSQVFDKTPSRAITLNQQATEVMLALGLQEAM
CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH
VGTAYIDDAIPAQWNDAYESVPVLAEKYPAAEVVLAQEPDFLFAGFGSAFSEDNLGAAEK
HHHHHHCCCCCCCCCHHHHHCCHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHH
WHDLGIGTYLVDASCKDKHLQDVPLTVAPIFEDIETVGKIFNVEDRANALIDTLQQRLDS
HHHCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VKAAPSGAGQTAFIYDSGAETPFSIGCCGGPALLASLTGLQSISSDVPGTWVDLSWEHVV
HHCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCEEECCCCEEE
AADPDVILLIEADWSTAAEKRAHMEADPVLSALRAVKEGRFVTVPFSETLLGMRFADGVE
ECCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHH
TVNNQLAKLP
HHHHHHHCCC
>Mature Secondary Structure
MKLRNLLPLLGLMASAAHADAVTIQSCGVSQVFDKTPSRAITLNQQATEVMLALGLQEAM
CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCEEEECHHHHHHHHHHHHHHHH
VGTAYIDDAIPAQWNDAYESVPVLAEKYPAAEVVLAQEPDFLFAGFGSAFSEDNLGAAEK
HHHHHHCCCCCCCCCHHHHHCCHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHH
WHDLGIGTYLVDASCKDKHLQDVPLTVAPIFEDIETVGKIFNVEDRANALIDTLQQRLDS
HHHCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VKAAPSGAGQTAFIYDSGAETPFSIGCCGGPALLASLTGLQSISSDVPGTWVDLSWEHVV
HHCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCEEECCCCEEE
AADPDVILLIEADWSTAAEKRAHMEADPVLSALRAVKEGRFVTVPFSETLLGMRFADGVE
ECCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHH
TVNNQLAKLP
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA