Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082692

Identifier: 99082692

GI number: 99082692

Start: 3022996

End: 3024117

Strand: Direct

Name: 99082692

Synonym: TM1040_2852

Alternate gene names: NA

Gene position: 3022996-3024117 (Clockwise)

Preceding gene: 99082691

Following gene: 99082696

Centisome position: 94.44

GC content: 57.49

Gene sequence:

>1122_bases
ATGAAGAACGCCATGCTGGTGCTCTGCGTCTTTCTGGGGCTTTCGGCCTGTGCAGATCGCGACCTCATGCCAATTGTGCC
GGAGGCCGTTGAAATCGGCACACCCTATACCGTGTTCTCCACCACCACCCGCGCACAAGAAGCGGATGGCACCTATGGTT
TTAGGCGCTCCGAGCAGCTGCGGATGATGGAAATGACCGTGACCATCCCGCCAAATCACAGCCCGGGAGAGCTCTCCTAT
CGCTACAAGAACCCGGACCCACACAAGAATTTTGCAATTGCCGAAGAGCTACCGGTCGCGAGTGTCAGTGACCTTCGGGC
CCGGTTTCTGCGCGAGCAGCGGGAAAACAACTGGCCTCTGCGCGAGGTGACAATCTTTGTGCATGGCTATAACAGCACGC
ACCCGGAAACCGCCTATCGCTCGGCGCAAATGGCGCATGACGTAGAACTTCCCGGATCCCTGGTGATGTATTCATGGCCC
AGCCGTGGACGTGCTTTCGGCTATGCCTATGACATCGACAGCATGCTCTTTGCCCGCGACGGGCTTGAGGAGACCGTGCG
GCGCGTCAAACAGGCGGGGGCAGAGCGCATCATTCTGGTAGCGCATTCCATGGGAACCGCGCTTGCGATGGAGATGTTGC
GCCAGGCCGATCTGCGAAATCCCGGCTGGGCGGCCCGCACGCTCAACGGTGGGGTCATCCTGATCTCACCCGATCTCGAT
GTGGATGTATTTGAGAGCCAGATGATGGATCTCAAACAGGTTCCGCAGCCATTTGGTGTGATGGTCTCGGAGAAAGATCA
TATCCTCAATATTTCCGGTCGACTGCGTGGCACAAGCGAGGGGGAGCGTCTTGGAAATATCAAATCAGCAGAGCGGCTGA
TGAAATGGCCCATTGAGGTGATCGACCTGACAGCATTTAATGCGGATGCAGCCTCTGGGCATTTTGTGGCGGCGACATCG
CCTAGTTTGCTGGCGGTCATACGATCCGCCAGCAACGTCAGTCGCCTGTTCGGCCCAGTTGATCCGACGCTGTTTCAACA
GATCCTACCGCAGTCTCAAACCATCGTAACCGACCATGGGAAACTCATGCTCGCCAGGCAGCAACGGCAGGAAGAGCGCT
GA

Upstream 100 bases:

>100_bases
CTCAGCCGCTACGTGCTCTGAAATCGGAACGCGTATATCTATGCCTTGCCCGACAACACCGCCGGGCAAGGCTCATCCGA
GGCGCAAAAAAGGGGCCAAC

Downstream 100 bases:

>100_bases
GGACACGTCAGCGCGTGCGTCTCAAATAGACGTAATATGCGCCTTCGCCTCCATGACTGATATGCGCAGGCGTCACCTGC
AGCACCGCCTGTGCGAGAGG

Product: protein of unknown function DUF900, hydrolase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIPPNHSPGELSY
RYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWP
SRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD
VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATS
PSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHGKLMLARQQRQEER

Sequences:

>Translated_373_residues
MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIPPNHSPGELSY
RYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWP
SRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD
VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATS
PSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHGKLMLARQQRQEER
>Mature_373_residues
MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIPPNHSPGELSY
RYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWP
SRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD
VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATS
PSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHGKLMLARQQRQEER

Specific function: Unknown

COG id: COG4782

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41663; Mature: 41663

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQL
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCE
RMMEMTVTIPPNHSPGELSYRYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPL
EEEEEEEEECCCCCCCCEEEEECCCCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHCCCCE
REVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWPSRGRAFGYAYDIDSMLFARD
EEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECHHHHHHHHC
GLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD
CHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEV
HHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHCCCEE
IDLTAFNADAASGHFVAATSPSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHG
EEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCC
KLMLARQQRQEER
CEEEEHHHHHCCC
>Mature Secondary Structure
MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQL
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCE
RMMEMTVTIPPNHSPGELSYRYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPL
EEEEEEEEECCCCCCCCEEEEECCCCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHCCCCE
REVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWPSRGRAFGYAYDIDSMLFARD
EEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECHHHHHHHHC
GLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD
CHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEV
HHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHCCCEE
IDLTAFNADAASGHFVAATSPSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHG
EEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCC
KLMLARQQRQEER
CEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA