| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082692
Identifier: 99082692
GI number: 99082692
Start: 3022996
End: 3024117
Strand: Direct
Name: 99082692
Synonym: TM1040_2852
Alternate gene names: NA
Gene position: 3022996-3024117 (Clockwise)
Preceding gene: 99082691
Following gene: 99082696
Centisome position: 94.44
GC content: 57.49
Gene sequence:
>1122_bases ATGAAGAACGCCATGCTGGTGCTCTGCGTCTTTCTGGGGCTTTCGGCCTGTGCAGATCGCGACCTCATGCCAATTGTGCC GGAGGCCGTTGAAATCGGCACACCCTATACCGTGTTCTCCACCACCACCCGCGCACAAGAAGCGGATGGCACCTATGGTT TTAGGCGCTCCGAGCAGCTGCGGATGATGGAAATGACCGTGACCATCCCGCCAAATCACAGCCCGGGAGAGCTCTCCTAT CGCTACAAGAACCCGGACCCACACAAGAATTTTGCAATTGCCGAAGAGCTACCGGTCGCGAGTGTCAGTGACCTTCGGGC CCGGTTTCTGCGCGAGCAGCGGGAAAACAACTGGCCTCTGCGCGAGGTGACAATCTTTGTGCATGGCTATAACAGCACGC ACCCGGAAACCGCCTATCGCTCGGCGCAAATGGCGCATGACGTAGAACTTCCCGGATCCCTGGTGATGTATTCATGGCCC AGCCGTGGACGTGCTTTCGGCTATGCCTATGACATCGACAGCATGCTCTTTGCCCGCGACGGGCTTGAGGAGACCGTGCG GCGCGTCAAACAGGCGGGGGCAGAGCGCATCATTCTGGTAGCGCATTCCATGGGAACCGCGCTTGCGATGGAGATGTTGC GCCAGGCCGATCTGCGAAATCCCGGCTGGGCGGCCCGCACGCTCAACGGTGGGGTCATCCTGATCTCACCCGATCTCGAT GTGGATGTATTTGAGAGCCAGATGATGGATCTCAAACAGGTTCCGCAGCCATTTGGTGTGATGGTCTCGGAGAAAGATCA TATCCTCAATATTTCCGGTCGACTGCGTGGCACAAGCGAGGGGGAGCGTCTTGGAAATATCAAATCAGCAGAGCGGCTGA TGAAATGGCCCATTGAGGTGATCGACCTGACAGCATTTAATGCGGATGCAGCCTCTGGGCATTTTGTGGCGGCGACATCG CCTAGTTTGCTGGCGGTCATACGATCCGCCAGCAACGTCAGTCGCCTGTTCGGCCCAGTTGATCCGACGCTGTTTCAACA GATCCTACCGCAGTCTCAAACCATCGTAACCGACCATGGGAAACTCATGCTCGCCAGGCAGCAACGGCAGGAAGAGCGCT GA
Upstream 100 bases:
>100_bases CTCAGCCGCTACGTGCTCTGAAATCGGAACGCGTATATCTATGCCTTGCCCGACAACACCGCCGGGCAAGGCTCATCCGA GGCGCAAAAAAGGGGCCAAC
Downstream 100 bases:
>100_bases GGACACGTCAGCGCGTGCGTCTCAAATAGACGTAATATGCGCCTTCGCCTCCATGACTGATATGCGCAGGCGTCACCTGC AGCACCGCCTGTGCGAGAGG
Product: protein of unknown function DUF900, hydrolase-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIPPNHSPGELSY RYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWP SRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATS PSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHGKLMLARQQRQEER
Sequences:
>Translated_373_residues MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIPPNHSPGELSY RYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWP SRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATS PSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHGKLMLARQQRQEER >Mature_373_residues MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIPPNHSPGELSY RYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWP SRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATS PSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHGKLMLARQQRQEER
Specific function: Unknown
COG id: COG4782
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41663; Mature: 41663
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQL CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCE RMMEMTVTIPPNHSPGELSYRYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPL EEEEEEEEECCCCCCCCEEEEECCCCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHCCCCE REVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWPSRGRAFGYAYDIDSMLFARD EEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECHHHHHHHHC GLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD CHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEV HHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHCCCEE IDLTAFNADAASGHFVAATSPSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHG EEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCC KLMLARQQRQEER CEEEEHHHHHCCC >Mature Secondary Structure MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQL CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCE RMMEMTVTIPPNHSPGELSYRYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPL EEEEEEEEECCCCCCCCEEEEECCCCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHCCCCE REVTIFVHGYNSTHPETAYRSAQMAHDVELPGSLVMYSWPSRGRAFGYAYDIDSMLFARD EEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECHHHHHHHHC GLEETVRRVKQAGAERIILVAHSMGTALAMEMLRQADLRNPGWAARTLNGGVILISPDLD CHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC VDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSEGERLGNIKSAERLMKWPIEV HHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHCCCEE IDLTAFNADAASGHFVAATSPSLLAVIRSASNVSRLFGPVDPTLFQQILPQSQTIVTDHG EEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCC KLMLARQQRQEER CEEEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA