| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082690
Identifier: 99082690
GI number: 99082690
Start: 3020535
End: 3021590
Strand: Direct
Name: 99082690
Synonym: TM1040_2850
Alternate gene names: NA
Gene position: 3020535-3021590 (Clockwise)
Preceding gene: 99082689
Following gene: 99082691
Centisome position: 94.36
GC content: 59.19
Gene sequence:
>1056_bases ATGATATCGCGCGATGACCTCAGGGCCGCGGTCGGGTCTGGCCTTCTGACCGAAGCACAGGCCGCGTCCTTGTCGGCCCT CGCGGACAGCCGCCGCGGCGCGCGCGAGGGTCTGGCACCCGGCGATGAACCTTTTGAGTTGTTCAAGGGTTTCAACGAGA TTTTCATAGTCATCGGCCTTGTGATCCTCGCGATGGGCTGGATTGCAGTCAATACCGCCTCGATGTTCACCGAGATCGTC AATTACCGCACGCAGGCCACCACAGCTGCGCTTTTTGGCGCGGCAATCCTTTGGGGCCTGTCCGAATATTTTATCCGCCG TCGTCGCATGGTAGCGCCTGCCATTGCCCTATCGGTCATGTTTGCCGGTAATGCCGCAATGGGCTTTGTCGCTCAGTATG CACAGCCCTTCATGATCGCCCAGCAAGACTACTCTTCGCTGCCAATGGCACTCGGGCTGTCAACACTTGCGCTGTTTGTA TTCTGGGGGCGCTTCCGCGTGCCATTTGCCATGGCGCTGATTGCGCTCGGTCTCTTTGCCGTAGCGCTGATCGTTGCGGC AGATCAATCCGGTGTGCCAACAGAACTCGGTGATCTCTTCCTTCTGAGCGCCAATGGTCCTTTTGCCTGGATTACGCTTG TGGTTGGTCTGTTGGTCTTTGCCGTCGCCATGGCCTTCGACCTGAGCGATCCTCATCGCGTGACACGGCGCTCAGCACAG GGGTTCTGGCTACATGTGGTTGCGGCTCCCGCGCTAGTGAACACAATCGCCCTGTCGCTGCTCACATCCGATCAGGGCGT GCTACTGGCACTGGTTCTTGGCTGCTTTGCGCTCATTGCCATCGTCATTGACAGGCGATCGTTCCTGATCACCGCAATCG GCTATATCGTGGCGCTGAGTACAACGGTTTTCGACAGCGAGGGCACCGGGATCAGCATCCTGGCGCTTGGCGTGGTTCTG GTGATCCTTGGCGCCTTCTGGGCCCGGATCCGCGCCGCGCTGCTTTCACTCCTTTCTGGTGTGCTGCCGCTTCATCGGCT GCCACCTTCTCACTGA
Upstream 100 bases:
>100_bases GCGACCGCGACGCAGAAACAGTGGCCCGTGACGCAATGGCGATCGCCTCTGACATCTGCGTCTACACCAACGGCAACCTC ACGGTGGAGCGCATCGGCAA
Downstream 100 bases:
>100_bases CCTCAAGGGATAGACATGACAGATCTGACCCCCCGCGAAATCGTTTCTGAACTCGACCGGTTCATCATTGGCCAAAAGGA TGCCAAACGCGCTGTCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MISRDDLRAAVGSGLLTEAQAASLSALADSRRGAREGLAPGDEPFELFKGFNEIFIVIGLVILAMGWIAVNTASMFTEIV NYRTQATTAALFGAAILWGLSEYFIRRRRMVAPAIALSVMFAGNAAMGFVAQYAQPFMIAQQDYSSLPMALGLSTLALFV FWGRFRVPFAMALIALGLFAVALIVAADQSGVPTELGDLFLLSANGPFAWITLVVGLLVFAVAMAFDLSDPHRVTRRSAQ GFWLHVVAAPALVNTIALSLLTSDQGVLLALVLGCFALIAIVIDRRSFLITAIGYIVALSTTVFDSEGTGISILALGVVL VILGAFWARIRAALLSLLSGVLPLHRLPPSH
Sequences:
>Translated_351_residues MISRDDLRAAVGSGLLTEAQAASLSALADSRRGAREGLAPGDEPFELFKGFNEIFIVIGLVILAMGWIAVNTASMFTEIV NYRTQATTAALFGAAILWGLSEYFIRRRRMVAPAIALSVMFAGNAAMGFVAQYAQPFMIAQQDYSSLPMALGLSTLALFV FWGRFRVPFAMALIALGLFAVALIVAADQSGVPTELGDLFLLSANGPFAWITLVVGLLVFAVAMAFDLSDPHRVTRRSAQ GFWLHVVAAPALVNTIALSLLTSDQGVLLALVLGCFALIAIVIDRRSFLITAIGYIVALSTTVFDSEGTGISILALGVVL VILGAFWARIRAALLSLLSGVLPLHRLPPSH >Mature_351_residues MISRDDLRAAVGSGLLTEAQAASLSALADSRRGAREGLAPGDEPFELFKGFNEIFIVIGLVILAMGWIAVNTASMFTEIV NYRTQATTAALFGAAILWGLSEYFIRRRRMVAPAIALSVMFAGNAAMGFVAQYAQPFMIAQQDYSSLPMALGLSTLALFV FWGRFRVPFAMALIALGLFAVALIVAADQSGVPTELGDLFLLSANGPFAWITLVVGLLVFAVAMAFDLSDPHRVTRRSAQ GFWLHVVAAPALVNTIALSLLTSDQGVLLALVLGCFALIAIVIDRRSFLITAIGYIVALSTTVFDSEGTGISILALGVVL VILGAFWARIRAALLSLLSGVLPLHRLPPSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37358; Mature: 37358
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISRDDLRAAVGSGLLTEAQAASLSALADSRRGAREGLAPGDEPFELFKGFNEIFIVIGL CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHH VILAMGWIAVNTASMFTEIVNYRTQATTAALFGAAILWGLSEYFIRRRRMVAPAIALSVM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAGNAAMGFVAQYAQPFMIAQQDYSSLPMALGLSTLALFVFWGRFRVPFAMALIALGLFA HCCCHHHHHHHHHHCCHHEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VALIVAADQSGVPTELGDLFLLSANGPFAWITLVVGLLVFAVAMAFDLSDPHRVTRRSAQ HHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC GFWLHVVAAPALVNTIALSLLTSDQGVLLALVLGCFALIAIVIDRRSFLITAIGYIVALS CCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TTVFDSEGTGISILALGVVLVILGAFWARIRAALLSLLSGVLPLHRLPPSH HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MISRDDLRAAVGSGLLTEAQAASLSALADSRRGAREGLAPGDEPFELFKGFNEIFIVIGL CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHH VILAMGWIAVNTASMFTEIVNYRTQATTAALFGAAILWGLSEYFIRRRRMVAPAIALSVM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAGNAAMGFVAQYAQPFMIAQQDYSSLPMALGLSTLALFVFWGRFRVPFAMALIALGLFA HCCCHHHHHHHHHHCCHHEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VALIVAADQSGVPTELGDLFLLSANGPFAWITLVVGLLVFAVAMAFDLSDPHRVTRRSAQ HHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC GFWLHVVAAPALVNTIALSLLTSDQGVLLALVLGCFALIAIVIDRRSFLITAIGYIVALS CCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TTVFDSEGTGISILALGVVLVILGAFWARIRAALLSLLSGVLPLHRLPPSH HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA