| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yjeE [C]
Identifier: 99082682
GI number: 99082682
Start: 3010583
End: 3011059
Strand: Direct
Name: yjeE [C]
Synonym: TM1040_2842
Alternate gene names: 99082682
Gene position: 3010583-3011059 (Clockwise)
Preceding gene: 99082681
Following gene: 99082683
Centisome position: 94.05
GC content: 58.7
Gene sequence:
>477_bases ATGACACAACGCTCTGCGACTTTCAGGCTGCCCAGCAGCGACGCAACCACAGAATTGGCTCGACACATCGCCCGGATCCT CGTTCCGGGCGATGTTGTCTTGCTCCAGGGCCCAATCGGCGCCGGAAAAACGCATTTCGCCCGCAGCCTGATCCAATCTC TGATGGAGGTGCCAGAAGACGTCCCCTCCCCTACGTTCACGCTGGTGCAAGTCTACAATGTCGCCACAGGAGAGCTTTGG CATGCCGATCTCTACCGGCTCTCGCATGTAGATGAGGTCGAGGAGCTAGGGCTTTTGGCGGCATTTGAGGACGCGATCTG CCTGATTGAATGGCCCGAGAAACTCGAAGATCTGCGCCCCGCGTCAGCACTGACAATGGAGCTCTCTTTAGACGAGGACC ATGACGACGCCCGGATGGCCGAACTCATGTGGACTGACGCCTCTTGGGACGCGCGACTGGAAGGAATTGCGCCATGA
Upstream 100 bases:
>100_bases TCGACCTGCCGCTGGCGCCGCCAGAACAAGAGCGTTTCGCCGTCCTCAAGGATAGCTGAACCCGCTTGCGGAGCCTCGCG CTGAACGTCATTGTGGCGCC
Downstream 100 bases:
>100_bases CATCTCGCGAGGACGAAATCAGAGATTTTCTGGCCACCCATGGCTATGCGGACTGGAACCGCACCCCACTGGCCGGAGAT GCCTCCAGCCGTCGCTACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MTQRSATFRLPSSDATTELARHIARILVPGDVVLLQGPIGAGKTHFARSLIQSLMEVPEDVPSPTFTLVQVYNVATGELW HADLYRLSHVDEVEELGLLAAFEDAICLIEWPEKLEDLRPASALTMELSLDEDHDDARMAELMWTDASWDARLEGIAP
Sequences:
>Translated_158_residues MTQRSATFRLPSSDATTELARHIARILVPGDVVLLQGPIGAGKTHFARSLIQSLMEVPEDVPSPTFTLVQVYNVATGELW HADLYRLSHVDEVEELGLLAAFEDAICLIEWPEKLEDLRPASALTMELSLDEDHDDARMAELMWTDASWDARLEGIAP >Mature_157_residues TQRSATFRLPSSDATTELARHIARILVPGDVVLLQGPIGAGKTHFARSLIQSLMEVPEDVPSPTFTLVQVYNVATGELWH ADLYRLSHVDEVEELGLLAAFEDAICLIEWPEKLEDLRPASALTMELSLDEDHDDARMAELMWTDASWDARLEGIAP
Specific function: Unknown
COG id: COG0802
COG function: function code R; Predicted ATPase or kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0079 family [H]
Homologues:
Organism=Escherichia coli, GI1790610, Length=147, Percent_Identity=34.6938775510204, Blast_Score=88, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003442 [H]
Pfam domain/function: PF02367 UPF0079 [H]
EC number: NA
Molecular weight: Translated: 17552; Mature: 17421
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRSATFRLPSSDATTELARHIARILVPGDVVLLQGPIGAGKTHFARSLIQSLMEVPED CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH VPSPTFTLVQVYNVATGELWHADLYRLSHVDEVEELGLLAAFEDAICLIEWPEKLEDLRP CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCC ASALTMELSLDEDHDDARMAELMWTDASWDARLEGIAP CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TQRSATFRLPSSDATTELARHIARILVPGDVVLLQGPIGAGKTHFARSLIQSLMEVPED CCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH VPSPTFTLVQVYNVATGELWHADLYRLSHVDEVEELGLLAAFEDAICLIEWPEKLEDLRP CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCC ASALTMELSLDEDHDDARMAELMWTDASWDARLEGIAP CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA