Click here to switch to the map view.

The map label for this gene is rcaC [H]

Identifier: 99082573

GI number: 99082573

Start: 2876423

End: 2877151

Strand: Direct

Name: rcaC [H]

Synonym: TM1040_2733

Alternate gene names: 99082573

Gene position: 2876423-2877151 (Clockwise)

Preceding gene: 99082566

Following gene: 99082574

Centisome position: 89.86

GC content: 57.06

Gene sequence:

>729_bases
ATGAATCATGGTATTCCGGCCCAAGCTGACACAAACCTGACACGGAGCAGATGTTTCGCCGCCATGCGCTACTTACTCGT
CGAAGATAACGATCAGCTGGCCAATGCGGTGCTCGATAGGCTCACGCTGGACGGACATGTTGTGGACCGGGCACCGGACC
TTGGTACGGCGGATGATTTTATGGCGACCACGGAATACGACATGATCCTGCTCGATATCATGCTGCCGGATGGCGATGGG
CGGCAGTTCCTGCAGGCGCATCGAGCTGCACAACGGGATACACCTGTGATTGTATTGACCGCACGTTCTGAAGTTTCGGA
CCGGGTCAGTGTCCTGGATCTCGGCGCCGATGATTATATCGTCAAACCCTTCGATTTTTCCGAACTTGAGGCCCGGTGCC
GGGCCGTACAACGCCGCAGATCCGGGGGAGCCAGCAATATTCACAGCTTTGGCGATGTGGTATTCGATCCTCTCGCCTGC
ACCCTGACAGTGAACGGACGCGAGGTGCGACTTCGCAACCGGGAATTGCGCCTCTTTGAGATCTTCATTGCGGCCCCCGA
TCAGGTTTTCTCCAAATCCAAGCTGGTGGATCGGCTGTTTTCCTACGACGTCGATGCTTCTGAAAACGCGATCGAAGTCT
ATGTCGGACGGCTGCGCAAACACCTTGAAGGGGCGCGGGCGCAAATCGTCACCGTGCGTGGGCTGGGCTACCGGCTGAGC
CTCTCATGA

Upstream 100 bases:

>100_bases
AAGTCAGAGCCGCAGCAGCAGCAGCCATCAGGGTGCGACGACCCAGTGCAAAAGATGTCATAATGTTCCTCCCATTTGAC
AAACGCGCAAAAGCGCGATC

Downstream 100 bases:

>100_bases
GCACGCCAATCCTGCTCCGGGGCTCTATTCGCAGGCGGCTCATTATCCAGTTGCTGACAGGGGCCGCGCTGTTGGCGGGG
CTGATGTTTTTGGTGGTTCA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNHGIPAQADTNLTRSRCFAAMRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDFMATTEYDMILLDIMLPDGDG
RQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQRRRSGGASNIHSFGDVVFDPLAC
TLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDRLFSYDVDASENAIEVYVGRLRKHLEGARAQIVTVRGLGYRLS
LS

Sequences:

>Translated_242_residues
MNHGIPAQADTNLTRSRCFAAMRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDFMATTEYDMILLDIMLPDGDG
RQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQRRRSGGASNIHSFGDVVFDPLAC
TLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDRLFSYDVDASENAIEVYVGRLRKHLEGARAQIVTVRGLGYRLS
LS
>Mature_242_residues
MNHGIPAQADTNLTRSRCFAAMRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDFMATTEYDMILLDIMLPDGDG
RQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQRRRSGGASNIHSFGDVVFDPLAC
TLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDRLFSYDVDASENAIEVYVGRLRKHLEGARAQIVTVRGLGYRLS
LS

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=35.6164383561644, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=36.8888888888889, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=36.4444444444444, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=37.219730941704, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=35.6164383561644, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=31.651376146789, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=35.5855855855856, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1789809, Length=224, Percent_Identity=32.5892857142857, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=31.0043668122271, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=30.4932735426009, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=31.4159292035398, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=28, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788550, Length=110, Percent_Identity=37.2727272727273, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=24.8908296943231, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27073; Mature: 27073

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHGIPAQADTNLTRSRCFAAMRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDF
CCCCCCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
MATTEYDMILLDIMLPDGDGRQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYI
HCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCE
VKPFDFSELEARCRAVQRRRSGGASNIHSFGDVVFDPLACTLTVNGREVRLRNRELRLFE
ECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCEEEEECCCEEEEE
IFIAAPDQVFSKSKLVDRLFSYDVDASENAIEVYVGRLRKHLEGARAQIVTVRGLGYRLS
EEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE
LS
CC
>Mature Secondary Structure
MNHGIPAQADTNLTRSRCFAAMRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDF
CCCCCCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
MATTEYDMILLDIMLPDGDGRQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYI
HCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCE
VKPFDFSELEARCRAVQRRRSGGASNIHSFGDVVFDPLACTLTVNGREVRLRNRELRLFE
ECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCEEEEECCCEEEEE
IFIAAPDQVFSKSKLVDRLFSYDVDASENAIEVYVGRLRKHLEGARAQIVTVRGLGYRLS
EEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE
LS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]