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The map label for this gene is ygiP [C]

Identifier: 99082543

GI number: 99082543

Start: 2845236

End: 2846147

Strand: Reverse

Name: ygiP [C]

Synonym: TM1040_2703

Alternate gene names: 99082543

Gene position: 2846147-2845236 (Counterclockwise)

Preceding gene: 99082548

Following gene: 99082538

Centisome position: 88.92

GC content: 59.54

Gene sequence:

>912_bases
ATGGCTTATATGGAGAGCCTGCGCCTGTTCTGCCGTGTGGTGGAGCTGGGCAGTATCACATCGGGAGGGCGCGACGTGCG
CCTGACGCCGGCAGTGGCCAGCAAACGCATCAAGGAGCTGGAGGAACATCTTGGCGTGCGGCTCTTCAATCGCACCACGC
GATCGCTGACGCCGACCGAAGCGGGTAAGCGGTTTTACCGCGAGGCCTTGCGCATCCTTGACGTGGTCGAAGAGGCCGAG
AGCGTTGTGGCACAGTTCTCCGGGCGGCCACGCGGGACTCTGAAAATCACCGCACCTCTGGCAGCTGGACGGCGCATAAT
CGCCCCGTTAGTGCCTGATTTTGTCGATCGGCACCCCGAGATCGACGTGCAGATGCGGATGTCGGATCGTCGGGTCGATA
TTCTGGCAGAAGGTCTGGACCTGGCCTTTTTTGTCGGTACGCCGAGCGACTCCAGCCTGAAGATGCGCAAGATCGCAAGC
GTTGACCGGGTGCTCTGTGCCTCGCCGCGCTATCTGGAACGCCATGGCATCCCTCATGTGCCGCAGGATCTGATGGGAAA
ACACAACTGCCTGCTGCTGCGCTACCCCCGTTCGCCAGAATATTTTTGGACCTTGAACACAGGCTCTGGGTTTCGAAAAT
TCGAAGTCAGCGGCAAATACGATGCAGACGACAGCGAGGTTCTGTTGAATTGGGCGCTGGATCATCGCGGCATCGTCAAC
AAACCACGATTTGAGGTGGCAGAGCATCTGCGCTCTGGTGCGCTGGTCGAGATCCTGCCGGAGGCGCGCCCGATGGCGGC
AACTTTCGGCTGCCTTTATCCGCACAAGAAACTGCAGGATCCAAAAGTGCGCCTGCTGGTGGATTTCATCACCGAACGCG
GACAGTCCTTGCTGGACGCGCTGGTCGGATAA

Upstream 100 bases:

>100_bases
AATACGGTGTGCTTTGCGAAATACTTTCAACACCCTGTTGATAATCAAATGGGGTTGTCTGGCTTATACAGGGGCGGTCA
CCCCAAGATGAGGATTCCAA

Downstream 100 bases:

>100_bases
AAAACGCCCCGGGGCAGGGCCGGGGCGTTTAGAGCCATGTGTGAGTAGTGGCTTAGAAATCAACCTCCATCGCGATGCCC
TGCGTGACCGCCAGCTCCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MAYMESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKRFYREALRILDVVEEAE
SVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPEIDVQMRMSDRRVDILAEGLDLAFFVGTPSDSSLKMRKIAS
VDRVLCASPRYLERHGIPHVPQDLMGKHNCLLLRYPRSPEYFWTLNTGSGFRKFEVSGKYDADDSEVLLNWALDHRGIVN
KPRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQDPKVRLLVDFITERGQSLLDALVG

Sequences:

>Translated_303_residues
MAYMESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKRFYREALRILDVVEEAE
SVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPEIDVQMRMSDRRVDILAEGLDLAFFVGTPSDSSLKMRKIAS
VDRVLCASPRYLERHGIPHVPQDLMGKHNCLLLRYPRSPEYFWTLNTGSGFRKFEVSGKYDADDSEVLLNWALDHRGIVN
KPRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQDPKVRLLVDFITERGQSLLDALVG
>Mature_302_residues
AYMESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKRFYREALRILDVVEEAES
VVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPEIDVQMRMSDRRVDILAEGLDLAFFVGTPSDSSLKMRKIASV
DRVLCASPRYLERHGIPHVPQDLMGKHNCLLLRYPRSPEYFWTLNTGSGFRKFEVSGKYDADDSEVLLNWALDHRGIVNK
PRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQDPKVRLLVDFITERGQSLLDALVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=29.9319727891156, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=32.1799307958478, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=30.8219178082192, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI145693193, Length=304, Percent_Identity=28.9473684210526, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=29.6296296296296, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=25.5972696245734, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1790011, Length=304, Percent_Identity=24.3421052631579, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789173, Length=188, Percent_Identity=29.2553191489362, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=248, Percent_Identity=25, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=161, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=30.46875, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=151, Percent_Identity=31.1258278145695, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=291, Percent_Identity=22.3367697594502, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34162; Mature: 34031

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50931 HTH_LYSR ; PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYMESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTE
CCHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCEEEECCHHCCCCCHH
AGKRFYREALRILDVVEEAESVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCC
IDVQMRMSDRRVDILAEGLDLAFFVGTPSDSSLKMRKIASVDRVLCASPRYLERHGIPHV
CEEEEECCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC
PQDLMGKHNCLLLRYPRSPEYFWTLNTGSGFRKFEVSGKYDADDSEVLLNWALDHRGIVN
CHHHCCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCHHEEEEEHHCCCCCCC
KPRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQDPKVRLLVDFITERGQSLLDA
CCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVG
HCC
>Mature Secondary Structure 
AYMESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTE
CHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCEEEECCHHCCCCCHH
AGKRFYREALRILDVVEEAESVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCC
IDVQMRMSDRRVDILAEGLDLAFFVGTPSDSSLKMRKIASVDRVLCASPRYLERHGIPHV
CEEEEECCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC
PQDLMGKHNCLLLRYPRSPEYFWTLNTGSGFRKFEVSGKYDADDSEVLLNWALDHRGIVN
CHHHCCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCHHEEEEEHHCCCCCCC
KPRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQDPKVRLLVDFITERGQSLLDA
CCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVG
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]