Click here to switch to the map view.

The map label for this gene is atpF

Identifier: 99082431

GI number: 99082431

Start: 2731437

End: 2731994

Strand: Reverse

Name: atpF

Synonym: TM1040_2591

Alternate gene names: 99082431

Gene position: 2731994-2731437 (Counterclockwise)

Preceding gene: 99082432

Following gene: 99082430

Centisome position: 85.35

GC content: 61.11

Gene sequence:

>558_bases
ATGCGTGCAACTCTTGCAATTGCTCTGACCCTCGCAACCACCTCGCCTGCATTCGCTGCGGGTGGTGGCTGGAACCTCGG
CAACACCGACTTTGTTGTTATCCTCGCGTTCCTGCTGTTCATTGGCATCCTGCTCGCTGCCAAAGTGCCGTCTTTGATCG
GCAAACAGCTCGACAACCGCGCGGACAGCATCAAGTCCGAACTGGAAGAAGCGCGCGCGCTGCGCGAAGAGGCCCAGACC
CTTCTGGCCTCCTACGAGCGCAAGCAGCAGGACGTTCAGGCGCAGGCCGAGCGTATTGTCGCAAACGCCCGTGACGAGGC
CGCTGCTGCGGCTGAGCAGGCGAAGGCGGATCTTGCAGCTTCCATCGCACGCCGTCTTACGGCGGCAGAGGAGCAGATCG
CGTCTGCCGAAGCCTCTGCCGTGAAAGAAGTGCGTGACCGCGCCATCACGATCGCTGTTGAGGTCGCTGACCAGGTGATC
TCCAAGCAGATGACCGCAGCTGATGCCAACAAGCTGATCGACGCGGCCATCCAGGACGTGGAAGCGAAACTGCACTAA

Upstream 100 bases:

>100_bases
TCGCCGCCGATACCGCATCTGCACTGGTTGCGGCGCTGGGTGGCAAAGACGACGCAGACGCTGTCAAAGCAGCCGTCGCT
GAACGGACGGAGGGCTGATC

Downstream 100 bases:

>100_bases
GCAGATCTTCGACCGAGTTTGCGAAAGCCCCGGCCTTATGGCTGGGGCTTTTGCGTGCTGAGGGGTGGGACTGTCGATCC
TGAGTTTGCCTCTCTCTGGG

Product: F0F1 ATP synthase subunit B

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGILLAAKVPSLIGKQLDNRADSIKSELEEARALREEAQT
LLASYERKQQDVQAQAERIVANARDEAAAAAEQAKADLAASIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVI
SKQMTAADANKLIDAAIQDVEAKLH

Sequences:

>Translated_185_residues
MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGILLAAKVPSLIGKQLDNRADSIKSELEEARALREEAQT
LLASYERKQQDVQAQAERIVANARDEAAAAAEQAKADLAASIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVI
SKQMTAADANKLIDAAIQDVEAKLH
>Mature_185_residues
MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGILLAAKVPSLIGKQLDNRADSIKSELEEARALREEAQT
LLASYERKQQDVQAQAERIVANARDEAAAAAEQAKADLAASIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVI
SKQMTAADANKLIDAAIQDVEAKLH

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_SILST (Q1GDE3)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_614585.1
- STRING:   Q1GDE3
- GeneID:   4077502
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_2591
- NMPDR:   fig|292414.1.peg.35
- eggNOG:   NOG136808
- HOGENOM:   HBG692690
- OMA:   KTEEFVA
- ProtClustDB:   PRK13455
- BioCyc:   SSP292414:TM1040_2591-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 19592; Mature: 19592

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x117d20ec)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGILLAAKVPSLIGKQLDNR
CCCHHEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADSIKSELEEARALREEAQTLLASYERKQQDVQAQAERIVANARDEAAAAAEQAKADLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
SIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVISKQMTAADANKLIDAAIQDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAKLH
HHHCH
>Mature Secondary Structure
MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGILLAAKVPSLIGKQLDNR
CCCHHEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADSIKSELEEARALREEAQTLLASYERKQQDVQAQAERIVANARDEAAAAAEQAKADLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
SIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVISKQMTAADANKLIDAAIQDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAKLH
HHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA