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The map label for this gene is rpoZ [H]

Identifier: 99082406

GI number: 99082406

Start: 2709220

End: 2709573

Strand: Reverse

Name: rpoZ [H]

Synonym: TM1040_2566

Alternate gene names: 99082406

Gene position: 2709573-2709220 (Counterclockwise)

Preceding gene: 99082407

Following gene: 99082405

Centisome position: 84.65

GC content: 60.45

Gene sequence:

>354_bases
ATGGCCCGCGTGACGGTCGAAGACTGCGTTGACAAGGTTCCCAACCGATTTGAGCTGGTGATGCTGGCCGCACATCGTGC
GCGTGAGATCTCTGCCGGTGCCGAACTCACCGTGGACCGTGACAACGACAAAAACCCGGTCGTCTCCCTGCGCGAGATTG
CCGAGGAAACGCAAAGCGCCGATGCCCTGCGCGAGCGCCTGATCGAGAGCAACCAGTCTCAGATCGAGGTGGACGAGCCG
GAAGAAGATTCCATGGCTCTCTTGATGGGTGGCGAAGCGGACAAGCCACAAGAAGACGACATGAGCGAAGAAAAGCTCCT
GCGCGCCTTGATGGAGGCCCAGGGTCAGGGCTGA

Upstream 100 bases:

>100_bases
GTAGCATTCGTGCAATTGTGATCGTCTCCGACTTGTCAAGTCCCGTGATTCATCCTAGAAGCACTCCCTCTGGACCCAGA
ACTGTATTGGAGAGTCGCCC

Downstream 100 bases:

>100_bases
TCCGGGCTGCTTGAAACAAGAGAGGTTGCGGACCGGCAATGACATCTGCTGATGACCTGATTTCCCTGGTCCGCGACTAC
AACCCCAAAACGAATGAGCA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSADALRERLIESNQSQIEVDEP
EEDSMALLMGGEADKPQEDDMSEEKLLRALMEAQGQG

Sequences:

>Translated_117_residues
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSADALRERLIESNQSQIEVDEP
EEDSMALLMGGEADKPQEDDMSEEKLLRALMEAQGQG
>Mature_116_residues
ARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSADALRERLIESNQSQIEVDEPE
EDSMALLMGGEADKPQEDDMSEEKLLRALMEAQGQG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=56, Percent_Identity=53.5714285714286, Blast_Score=59, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 13027; Mature: 12895

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
DALRERLIESNQSQIEVDEPEEDSMALLMGGEADKPQEDDMSEEKLLRALMEAQGQG
HHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSA
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
DALRERLIESNQSQIEVDEPEEDSMALLMGGEADKPQEDDMSEEKLLRALMEAQGQG
HHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA