Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 99082367

GI number: 99082367

Start: 2667184

End: 2668305

Strand: Direct

Name: yfdE [H]

Synonym: TM1040_2527

Alternate gene names: 99082367

Gene position: 2667184-2668305 (Clockwise)

Preceding gene: 99082359

Following gene: 99082369

Centisome position: 83.33

GC content: 60.61

Gene sequence:

>1122_bases
TTGCTCGAAGGCATACGCATCATTGAAATCGAAGCGCTCGGTCCCGCCCCATTTGCGGCCATGATGCTTTCGGATCTCGG
CGCCGAGGTCATCTGCATTCACCGCAAAGGCGCTGCGGCCACATCCATCATGCCAGAGCGCTCTATCCTGGATCGGGGCA
AGAAATCCATTGCTCTGGACCTCAAGGACCCGAGCGATCTGAAGATCGCACAGGATCTCATTGCAACCGCGGACGGCTTA
ATTGAGGGGTTCAGACCGGGCGTGATGGAACGTCTCGGGCTCGGCCCCCAAGCCATGCAGAGTAATAATCCACGCCTTGT
TTACGGCCGGCTAACGGGGTGGGGGCAAGACAGCCCCAGAGCCAACGAGGCTGGACACGACCTGAATTACATCGCGCTCT
CCGGCGCGCTTTGGCCCGCGTCGAATGCCGGTAACGCCCCTATGCCGCCGGCCACCCTTGTGGGTGATATCGGGGGCGGC
GCGCTCTACCTCGTCGCAGGGCTTCTGGCCGGCCTCTTGCGCGCCGCACAAACCGGCATGGGCACCGTTGTCGACGCGGC
GATCTACGATGGCTCCGCACATATGATGACTCTTTTGATGGCCCTGCGCCAAGCTGGCAGCTTTGGCGAAACACGCGGCG
AGAACCTGCTCGACGGTCCCCATTGGAGCAGAACCTATCGTTGCAGATGCGGAGGCTATATCGCGGTCCAATGTCTTGAG
CCGAAATTCTACGAAATTTTTCTGGAGAGACTAAACCTCGCGCAGGATACCGATTTTCAGCAGCAGTTCGACAAGGCTTC
GTGGCCAGCTCTTACCTCGCGGCTCGCTCGCCTTTTTGCCACGCAAGACCGCGAGCACTGGTCAGCCCTGTTTGCCACCA
GTGATGCCTGCGTCACCAAGGTTCTGTCCCCGTCCGAGGCTGCCAAGGACCCGATGAACGACAGACAGACCTGGCACACC
ACAGGGGGCATACTGCAAGCGGCCCCCGCACCTCGCTTTGACGGGCAGACACGAGCGCCCAAAAAGCCGCCAAATCGTGA
CGAGCACCGAGCGGAGATACTTGCGATGCTGCGCGCGGACGTCTCCCCCTCTTCCAACGAGAAATACCCCGGGGGTGTTT
GA

Upstream 100 bases:

>100_bases
AAGGCTACGTTGCGTCGCCTCAAAGCCAATAGGTTGACAGCAAAGCCCACCGCCTGCGCAAGCTGAGCCACCTTATCGGC
CAGTTGCAGGAGGACAGAAA

Downstream 100 bases:

>100_bases
GGGGGCAGCGCCCCCTCATCGGAATGACCAGATCTTTGTAGCGTGCAATCCTGCGCGCCTAAGCGCCTTCGCGTACGGTA
TCGATCATTCGTTGCACGTT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLEGIRIIEIEALGPAPFAAMMLSDLGAEVICIHRKGAAATSIMPERSILDRGKKSIALDLKDPSDLKIAQDLIATADGL
IEGFRPGVMERLGLGPQAMQSNNPRLVYGRLTGWGQDSPRANEAGHDLNYIALSGALWPASNAGNAPMPPATLVGDIGGG
ALYLVAGLLAGLLRAAQTGMGTVVDAAIYDGSAHMMTLLMALRQAGSFGETRGENLLDGPHWSRTYRCRCGGYIAVQCLE
PKFYEIFLERLNLAQDTDFQQQFDKASWPALTSRLARLFATQDREHWSALFATSDACVTKVLSPSEAAKDPMNDRQTWHT
TGGILQAAPAPRFDGQTRAPKKPPNRDEHRAEILAMLRADVSPSSNEKYPGGV

Sequences:

>Translated_373_residues
MLEGIRIIEIEALGPAPFAAMMLSDLGAEVICIHRKGAAATSIMPERSILDRGKKSIALDLKDPSDLKIAQDLIATADGL
IEGFRPGVMERLGLGPQAMQSNNPRLVYGRLTGWGQDSPRANEAGHDLNYIALSGALWPASNAGNAPMPPATLVGDIGGG
ALYLVAGLLAGLLRAAQTGMGTVVDAAIYDGSAHMMTLLMALRQAGSFGETRGENLLDGPHWSRTYRCRCGGYIAVQCLE
PKFYEIFLERLNLAQDTDFQQQFDKASWPALTSRLARLFATQDREHWSALFATSDACVTKVLSPSEAAKDPMNDRQTWHT
TGGILQAAPAPRFDGQTRAPKKPPNRDEHRAEILAMLRADVSPSSNEKYPGGV
>Mature_373_residues
MLEGIRIIEIEALGPAPFAAMMLSDLGAEVICIHRKGAAATSIMPERSILDRGKKSIALDLKDPSDLKIAQDLIATADGL
IEGFRPGVMERLGLGPQAMQSNNPRLVYGRLTGWGQDSPRANEAGHDLNYIALSGALWPASNAGNAPMPPATLVGDIGGG
ALYLVAGLLAGLLRAAQTGMGTVVDAAIYDGSAHMMTLLMALRQAGSFGETRGENLLDGPHWSRTYRCRCGGYIAVQCLE
PKFYEIFLERLNLAQDTDFQQQFDKASWPALTSRLARLFATQDREHWSALFATSDACVTKVLSPSEAAKDPMNDRQTWHT
TGGILQAAPAPRFDGQTRAPKKPPNRDEHRAEILAMLRADVSPSSNEKYPGGV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=359, Percent_Identity=37.0473537604457, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI42794625, Length=359, Percent_Identity=37.0473537604457, Blast_Score=235, Evalue=4e-62,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=39.5437262357414, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=40.4, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=47.0149253731343, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI42822893, Length=134, Percent_Identity=47.0149253731343, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI300863128, Length=390, Percent_Identity=26.4102564102564, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI300863124, Length=357, Percent_Identity=25.4901960784314, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI300863126, Length=146, Percent_Identity=36.3013698630137, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI87082093, Length=350, Percent_Identity=27.4285714285714, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788717, Length=404, Percent_Identity=25.4950495049505, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786222, Length=354, Percent_Identity=25.1412429378531, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI32564160, Length=337, Percent_Identity=33.8278931750742, Blast_Score=186, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=31.858407079646, Blast_Score=181, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24585488, Length=367, Percent_Identity=35.6948228882834, Blast_Score=214, Evalue=5e-56,
Organism=Drosophila melanogaster, GI24648431, Length=334, Percent_Identity=25.1497005988024, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40180; Mature: 40180

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGIRIIEIEALGPAPFAAMMLSDLGAEVICIHRKGAAATSIMPERSILDRGKKSIALD
CCCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCHHHCCCCHHHHHCCCCEEEEE
LKDPSDLKIAQDLIATADGLIEGFRPGVMERLGLGPQAMQSNNPRLVYGRLTGWGQDSPR
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCC
ANEAGHDLNYIALSGALWPASNAGNAPMPPATLVGDIGGGALYLVAGLLAGLLRAAQTGM
CCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHCCC
GTVVDAAIYDGSAHMMTLLMALRQAGSFGETRGENLLDGPHWSRTYRCRCGGYIAVQCLE
CHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECC
PKFYEIFLERLNLAQDTDFQQQFDKASWPALTSRLARLFATQDREHWSALFATSDACVTK
CHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHH
VLSPSEAAKDPMNDRQTWHTTGGILQAAPAPRFDGQTRAPKKPPNRDEHRAEILAMLRAD
HCCCHHHHCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
VSPSSNEKYPGGV
CCCCCCCCCCCCC
>Mature Secondary Structure
MLEGIRIIEIEALGPAPFAAMMLSDLGAEVICIHRKGAAATSIMPERSILDRGKKSIALD
CCCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCHHHCCCCHHHHHCCCCEEEEE
LKDPSDLKIAQDLIATADGLIEGFRPGVMERLGLGPQAMQSNNPRLVYGRLTGWGQDSPR
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCC
ANEAGHDLNYIALSGALWPASNAGNAPMPPATLVGDIGGGALYLVAGLLAGLLRAAQTGM
CCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHCCC
GTVVDAAIYDGSAHMMTLLMALRQAGSFGETRGENLLDGPHWSRTYRCRCGGYIAVQCLE
CHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECC
PKFYEIFLERLNLAQDTDFQQQFDKASWPALTSRLARLFATQDREHWSALFATSDACVTK
CHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHH
VLSPSEAAKDPMNDRQTWHTTGGILQAAPAPRFDGQTRAPKKPPNRDEHRAEILAMLRAD
HCCCHHHHCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
VSPSSNEKYPGGV
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]