Click here to switch to the map view.

The map label for this gene is ydcO [H]

Identifier: 99082325

GI number: 99082325

Start: 2623777

End: 2624955

Strand: Direct

Name: ydcO [H]

Synonym: TM1040_2485

Alternate gene names: 99082325

Gene position: 2623777-2624955 (Clockwise)

Preceding gene: 99082321

Following gene: 99082326

Centisome position: 81.97

GC content: 61.66

Gene sequence:

>1179_bases
ATGCTGCGCAACCTCAAACTCTCTCACCTCGCTGCGGGAGCGATTGTTGTGCTGGTAGGATATACCAGCTCGGTCGCCAT
CATCTTTCAGGCCATCGAGGCGGTGGGGGCAACGCAGACACAGGCCAATAGCTGGCTGGTGGTTCTGGGGCTGGGTATGG
GGCTCACGAGCCTTACCCTTTCCTTGCGGTTTCGCATGCCCATCCTCACGGCATGGTCGACACCGGGTGCCGCACTTCTG
GCAACGGGACTGGATGGGGTCTCATTGCCACAAGCGGTGGGGGCCTTCCTGTTTTGTGGCGCACTCCTGACCCTAACGGG
GCTCACGGGCTGGTTTGAACGACTGGCAAAACTGATCCCCGACTCGCTTGCAAACGCGCTCCTCGCTGGGATCCTGTTCC
AGTTTGGACTCTCGGCGTTCCACGCCCTGAGCGATGATGCAGCACTCGTGGGGGCCATGGGCGTCACCTTTCTGGCGGGC
AAAGTCCTTTTCCCGCGCTATGCGATCCCGGTCGTGCTGCTCGTCGGCTGCCTCTGGGCCGCGGGGGCAGGATCGTTTGG
CGACCTTGATGCCCTCACCTTCAGCCTCAGCATGCCAGAATTCGTGGCACCAGAGTTCTCACTCCCGGTCCTGATTGGTG
TGGGACTGCCGTTGTACGTCGTGACCATGTGTTCGCAAAATATGCCGGGCGTGGTGACATTGCGCAGTGCCGGATACCCG
CCCCCGGTCTCTGCCAGCCTTACCGTCACCGGGCTAGCATCCCTGATCCTGTCACCGTTTGGTGGCTTTGCCTTCAACCT
GGCCGCCATCACGGCCGCCATCTGTGCCGGACCCGAAGCTGACGAGAATCCCAAGAGCCGCTATCTCTCAAGCGTGATTG
CCGGGGTTCTCTACTGTCTGGTGGGCTTGGGTGGCGCGACCGTCATCAGCCTGTTTCTCATCGCCCCAAAGGCCCTGATC
GCCACCGTTGCAGGGCTCGCGCTCCTGTCGACCATCGGCAACAGCCTCTCGGCCGCATTGGCTGAAAGCCGGGGGCGCGA
GGCCGCGCTGATCACCTTCATGATGACAGTTTCGGGCGTGACTTTTGCGGGAATCGGTGCCGCTTTCTGGGCTCTCCTGA
TAGGACTTGCTGTCACCCGTCTGACGACGCTGCCACTTCCGCAACCCATCAAGACCTGA

Upstream 100 bases:

>100_bases
CGGGCCATAGAAAAAATGACTTGTGCGTTATAGCGCACGAACTGTAGTGTGCGCTATAACGCACAACGCTTACCCCAGCC
CTTGCCCGAGGAAAACCCTG

Downstream 100 bases:

>100_bases
TGACCTGAACCGCCGCGGTTTTGCAAAACACTGAAATCGCGGCCCCTTGAGTAATTTCGTGACCACAAACCGCCCCGACA
TGTTGCCTTTACTGCGCGAA

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLRNLKLSHLAAGAIVVLVGYTSSVAIIFQAIEAVGATQTQANSWLVVLGLGMGLTSLTLSLRFRMPILTAWSTPGAALL
ATGLDGVSLPQAVGAFLFCGALLTLTGLTGWFERLAKLIPDSLANALLAGILFQFGLSAFHALSDDAALVGAMGVTFLAG
KVLFPRYAIPVVLLVGCLWAAGAGSFGDLDALTFSLSMPEFVAPEFSLPVLIGVGLPLYVVTMCSQNMPGVVTLRSAGYP
PPVSASLTVTGLASLILSPFGGFAFNLAAITAAICAGPEADENPKSRYLSSVIAGVLYCLVGLGGATVISLFLIAPKALI
ATVAGLALLSTIGNSLSAALAESRGREAALITFMMTVSGVTFAGIGAAFWALLIGLAVTRLTTLPLPQPIKT

Sequences:

>Translated_392_residues
MLRNLKLSHLAAGAIVVLVGYTSSVAIIFQAIEAVGATQTQANSWLVVLGLGMGLTSLTLSLRFRMPILTAWSTPGAALL
ATGLDGVSLPQAVGAFLFCGALLTLTGLTGWFERLAKLIPDSLANALLAGILFQFGLSAFHALSDDAALVGAMGVTFLAG
KVLFPRYAIPVVLLVGCLWAAGAGSFGDLDALTFSLSMPEFVAPEFSLPVLIGVGLPLYVVTMCSQNMPGVVTLRSAGYP
PPVSASLTVTGLASLILSPFGGFAFNLAAITAAICAGPEADENPKSRYLSSVIAGVLYCLVGLGGATVISLFLIAPKALI
ATVAGLALLSTIGNSLSAALAESRGREAALITFMMTVSGVTFAGIGAAFWALLIGLAVTRLTTLPLPQPIKT
>Mature_392_residues
MLRNLKLSHLAAGAIVVLVGYTSSVAIIFQAIEAVGATQTQANSWLVVLGLGMGLTSLTLSLRFRMPILTAWSTPGAALL
ATGLDGVSLPQAVGAFLFCGALLTLTGLTGWFERLAKLIPDSLANALLAGILFQFGLSAFHALSDDAALVGAMGVTFLAG
KVLFPRYAIPVVLLVGCLWAAGAGSFGDLDALTFSLSMPEFVAPEFSLPVLIGVGLPLYVVTMCSQNMPGVVTLRSAGYP
PPVSASLTVTGLASLILSPFGGFAFNLAAITAAICAGPEADENPKSRYLSSVIAGVLYCLVGLGGATVISLFLIAPKALI
ATVAGLALLSTIGNSLSAALAESRGREAALITFMMTVSGVTFAGIGAAFWALLIGLAVTRLTTLPLPQPIKT

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=366, Percent_Identity=47.2677595628415, Blast_Score=322, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40043; Mature: 40043

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRNLKLSHLAAGAIVVLVGYTSSVAIIFQAIEAVGATQTQANSWLVVLGLGMGLTSLTL
CCCCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHH
SLRFRMPILTAWSTPGAALLATGLDGVSLPQAVGAFLFCGALLTLTGLTGWFERLAKLIP
HHEECCCEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSLANALLAGILFQFGLSAFHALSDDAALVGAMGVTFLAGKVLFPRYAIPVVLLVGCLWA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGAGSFGDLDALTFSLSMPEFVAPEFSLPVLIGVGLPLYVVTMCSQNMPGVVTLRSAGYP
CCCCCCCCHHHEEEEECCCHHHCCCCCCCHHHHCCHHHHHHHHHCCCCCCEEEECCCCCC
PPVSASLTVTGLASLILSPFGGFAFNLAAITAAICAGPEADENPKSRYLSSVIAGVLYCL
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VGLGGATVISLFLIAPKALIATVAGLALLSTIGNSLSAALAESRGREAALITFMMTVSGV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
TFAGIGAAFWALLIGLAVTRLTTLPLPQPIKT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLRNLKLSHLAAGAIVVLVGYTSSVAIIFQAIEAVGATQTQANSWLVVLGLGMGLTSLTL
CCCCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHH
SLRFRMPILTAWSTPGAALLATGLDGVSLPQAVGAFLFCGALLTLTGLTGWFERLAKLIP
HHEECCCEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSLANALLAGILFQFGLSAFHALSDDAALVGAMGVTFLAGKVLFPRYAIPVVLLVGCLWA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGAGSFGDLDALTFSLSMPEFVAPEFSLPVLIGVGLPLYVVTMCSQNMPGVVTLRSAGYP
CCCCCCCCHHHEEEEECCCHHHCCCCCCCHHHHCCHHHHHHHHHCCCCCCEEEECCCCCC
PPVSASLTVTGLASLILSPFGGFAFNLAAITAAICAGPEADENPKSRYLSSVIAGVLYCL
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VGLGGATVISLFLIAPKALIATVAGLALLSTIGNSLSAALAESRGREAALITFMMTVSGV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
TFAGIGAAFWALLIGLAVTRLTTLPLPQPIKT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]