| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082245
Identifier: 99082245
GI number: 99082245
Start: 2541933
End: 2544470
Strand: Direct
Name: 99082245
Synonym: TM1040_2405
Alternate gene names: NA
Gene position: 2541933-2544470 (Clockwise)
Preceding gene: 99082244
Following gene: 99082246
Centisome position: 79.41
GC content: 61.07
Gene sequence:
>2538_bases ATGAGCACGGAGGCCCTCATCACTGCCGTGATGATGATTGGGCATTCTCTGATCGGTCCTGAAAATCCGCGCATGCTGCA ACAGCTTCTTCAGGCCGGGCAAGAGAACCGACCCGTGGTCGAGTTCCAGATCATCAACGGTGCGCCCCTGCGGTATAATT GGGAACACGCCGACAAGGCCCAGGGGGTCAATGCCCGCACGCGCCTCGCCGAAGCTCCGGTGGATGCGCTGATCGTGACA GAGGCGATCCCGCTCGCCAATCATCTGCGCTGGAGCGATACCGAAGGCGCGATAGAAAAATTCTATAGCGTCGCCGCCCA GTCGAACCCCAATGTGACACTATATGTCCAGGAGGGCTGGCACAGCCTCTTGAGCGGAACCGGAGAAGAGGTGCCCTTTG ATGACGGGGGCGACGTGGCCTGGCGCAGCCGCCTCGACAACGATCTGCCCCATTGGCAGGGTGTCGTAGAAAAAGTGCGC TCAAACACCGGCGGCGACATTCGCCTCTTACCCACAGGGCAAGCCCTTGGTCGTCTCGCGGACGCCATCGAAACCGGCAC CGTGCCGGGGTTGAGTAGGATCAACGATGTCTTTTCGGACGACATTCACCCCAATGACATCGGGTTCTATTACCTCGCGC TTGTGCAATATGCGGTGCTCACCGGCACCTCGCCCGAAGGCCTGCCACGCGTCCTGAAAACCGAATGGGGCACACCCTAC AAGGCGCCTTCTGCCGATCTTGCGCTGCGCTTGCAGGAAATTGCGGCGGGCGCGGCCACGGGATCACAAGCGCGCATGAC GCTTCCACCGGATCCTGTCGCGTTGCCGCTCGAGCCCGGGCCTGCAATCCTGAATGACGAGACCTCTGTTGCTGCCCTGC CATCCGGGAAACCGATTGTACGCAAGCAGCCGATTGCGATGAACCTTGCCGCGATCCGCGATTGGAGCCCGCAGGCACCT TTCCTCGATCACTTCAAGACCGCGCGCGCCTGGATCGGACATTTGCCCGGGCGCTGGGGCGGTGTCACCGAAGAAGAGCT GCGCGCCGCAGGCTATCTCGACCCGGATGGCTGGCCGCTCGCTATTCCGCCCGAGCTTGGCTCCATTGGAACCGTGCTCT TGAACGATCTGCCAGAAACCGCCAACAGCCTCTCGGGGCGCTATGTCGTGCGCTTTGACGGCAAAGGCATCGTCGAGGCG GGGGGGCGGGCAAAAAATGTCCGCTATGGCAAAAACCAGGTCTCGTTTGATTTTGAGCCCGGTCCCGGCGCGGTGGATAT TCGCATTCAACGCTCTGATCGCGCGGGTACGGGCGACTATGTGCGCAACATCACCGTGGTGCGCGAACGCGACCTGCCAG CCTATGATCAAGGGGCGCTGTTCAACCCGGACTGGCTTGACCGGATAGAAGGCTTTGCCGCGCTACGTTTCATGGATTGG ATGGATACCAACAATTCGGACCAGATCGGTTGGGAGGATCGTCCGCGCTATCGCGACTACACTTGGAGCACCCGCGGTGT GCCCGCCGAGGTCCTCGTGACGCTTGCCAACCGCGTGGGCGCCGATCCCTGGTTCACCCTGCCACATATGTCCGACGATA CTTATGTCCGCAATTTCGCCACGCTCGTGCGCGATGGACTGGACGAAGACCTAAAAGCCTATGTGGAATATTCCAACGAG GTCTGGAACTGGCAGTTCCAACAGGCCCAATGGGCAGACAAGCAGGCGCAGGAGGCCTGGGGCAAAGACGGTCTGTGGCT GCAGTATTATGGGGCAAGATCCGCCGAAATCGCCGAGATCTGGACCGAGGTTTTTGCTGAAGGCACGGATCAAGTACAGC TGCCTGACCGCCTTGTTCGGGTGATGTCCACTCAGACCGGCTGGCTCGGGCTTGAAGAGCAAATCCTGACTGCGCCGCTT TGGACGGCCGAAGACCCGGATCGCCAGCCACCCTACCGCAGTTTTGATGCCTATGCCGTCACCGGATATTTTGGAGCATC ACTCGGAATGCAGGAACAGGCGCCCATGGTGCGCGCCTGGCTCGCTGACAGCCGCGAGCGCGCGCGTGATGCCGGGGTTC AAAACGGCCTGCGCGGGGCGGCGTTGGCCGGCTATGTTGAGGACCATCAGTTCGACATCGCAACCGCGCAGGCCCTGGTC GAATTGCAGGATGGGTTGAACAGCGGCTCGCAAGAGGGCGCGCTAAACGACCTCTTGGCGCGCATCCTCCCTTATCATGC CAAGGTTGCGGCAGAACACGACCTGGAACTTATCATGTATGAGGGCGGCACCCATGTGGTCGGCCACGGCCCGCTGGTCG ATGATGACGCGCTGACCGCGTTTTTCACGCATCTGAACTACAGTCCGGAGATGGGCGAGCTTTATCGCAAGCTGCTCAAT GCCTGGCCCGACATCGGCGGAACCCTGTTTGGCGCCTATTCCGATGTGTCGGTACCAGGGCGCTGGGGCAGCTGGGGCAA CTTGCGGACCCTTTCAGACAAAAACCCCCGCTGGGATGTGTTGGAGGCAGCCAGGTGA
Upstream 100 bases:
>100_bases CACTCGACGCAGAAACCGCCCGCCAGTTGCAATCCATCGTATGGCGCACCGTCACCCACCTGCCCCGCACCGGCGTAGCA AGTGCCAAATCGGAGGCATC
Downstream 100 bases:
>100_bases CAGCCCCTCCCCAGCGCCGGATTTCCATCCTCATCCCCGCCCACAACGAGGCCGACTATATCGGTGATTGTCTCACAGCG CTTTATGCGTCTGAGATTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 845; Mature: 844
Protein sequence:
>845_residues MSTEALITAVMMIGHSLIGPENPRMLQQLLQAGQENRPVVEFQIINGAPLRYNWEHADKAQGVNARTRLAEAPVDALIVT EAIPLANHLRWSDTEGAIEKFYSVAAQSNPNVTLYVQEGWHSLLSGTGEEVPFDDGGDVAWRSRLDNDLPHWQGVVEKVR SNTGGDIRLLPTGQALGRLADAIETGTVPGLSRINDVFSDDIHPNDIGFYYLALVQYAVLTGTSPEGLPRVLKTEWGTPY KAPSADLALRLQEIAAGAATGSQARMTLPPDPVALPLEPGPAILNDETSVAALPSGKPIVRKQPIAMNLAAIRDWSPQAP FLDHFKTARAWIGHLPGRWGGVTEEELRAAGYLDPDGWPLAIPPELGSIGTVLLNDLPETANSLSGRYVVRFDGKGIVEA GGRAKNVRYGKNQVSFDFEPGPGAVDIRIQRSDRAGTGDYVRNITVVRERDLPAYDQGALFNPDWLDRIEGFAALRFMDW MDTNNSDQIGWEDRPRYRDYTWSTRGVPAEVLVTLANRVGADPWFTLPHMSDDTYVRNFATLVRDGLDEDLKAYVEYSNE VWNWQFQQAQWADKQAQEAWGKDGLWLQYYGARSAEIAEIWTEVFAEGTDQVQLPDRLVRVMSTQTGWLGLEEQILTAPL WTAEDPDRQPPYRSFDAYAVTGYFGASLGMQEQAPMVRAWLADSRERARDAGVQNGLRGAALAGYVEDHQFDIATAQALV ELQDGLNSGSQEGALNDLLARILPYHAKVAAEHDLELIMYEGGTHVVGHGPLVDDDALTAFFTHLNYSPEMGELYRKLLN AWPDIGGTLFGAYSDVSVPGRWGSWGNLRTLSDKNPRWDVLEAAR
Sequences:
>Translated_845_residues MSTEALITAVMMIGHSLIGPENPRMLQQLLQAGQENRPVVEFQIINGAPLRYNWEHADKAQGVNARTRLAEAPVDALIVT EAIPLANHLRWSDTEGAIEKFYSVAAQSNPNVTLYVQEGWHSLLSGTGEEVPFDDGGDVAWRSRLDNDLPHWQGVVEKVR SNTGGDIRLLPTGQALGRLADAIETGTVPGLSRINDVFSDDIHPNDIGFYYLALVQYAVLTGTSPEGLPRVLKTEWGTPY KAPSADLALRLQEIAAGAATGSQARMTLPPDPVALPLEPGPAILNDETSVAALPSGKPIVRKQPIAMNLAAIRDWSPQAP FLDHFKTARAWIGHLPGRWGGVTEEELRAAGYLDPDGWPLAIPPELGSIGTVLLNDLPETANSLSGRYVVRFDGKGIVEA GGRAKNVRYGKNQVSFDFEPGPGAVDIRIQRSDRAGTGDYVRNITVVRERDLPAYDQGALFNPDWLDRIEGFAALRFMDW MDTNNSDQIGWEDRPRYRDYTWSTRGVPAEVLVTLANRVGADPWFTLPHMSDDTYVRNFATLVRDGLDEDLKAYVEYSNE VWNWQFQQAQWADKQAQEAWGKDGLWLQYYGARSAEIAEIWTEVFAEGTDQVQLPDRLVRVMSTQTGWLGLEEQILTAPL WTAEDPDRQPPYRSFDAYAVTGYFGASLGMQEQAPMVRAWLADSRERARDAGVQNGLRGAALAGYVEDHQFDIATAQALV ELQDGLNSGSQEGALNDLLARILPYHAKVAAEHDLELIMYEGGTHVVGHGPLVDDDALTAFFTHLNYSPEMGELYRKLLN AWPDIGGTLFGAYSDVSVPGRWGSWGNLRTLSDKNPRWDVLEAAR >Mature_844_residues STEALITAVMMIGHSLIGPENPRMLQQLLQAGQENRPVVEFQIINGAPLRYNWEHADKAQGVNARTRLAEAPVDALIVTE AIPLANHLRWSDTEGAIEKFYSVAAQSNPNVTLYVQEGWHSLLSGTGEEVPFDDGGDVAWRSRLDNDLPHWQGVVEKVRS NTGGDIRLLPTGQALGRLADAIETGTVPGLSRINDVFSDDIHPNDIGFYYLALVQYAVLTGTSPEGLPRVLKTEWGTPYK APSADLALRLQEIAAGAATGSQARMTLPPDPVALPLEPGPAILNDETSVAALPSGKPIVRKQPIAMNLAAIRDWSPQAPF LDHFKTARAWIGHLPGRWGGVTEEELRAAGYLDPDGWPLAIPPELGSIGTVLLNDLPETANSLSGRYVVRFDGKGIVEAG GRAKNVRYGKNQVSFDFEPGPGAVDIRIQRSDRAGTGDYVRNITVVRERDLPAYDQGALFNPDWLDRIEGFAALRFMDWM DTNNSDQIGWEDRPRYRDYTWSTRGVPAEVLVTLANRVGADPWFTLPHMSDDTYVRNFATLVRDGLDEDLKAYVEYSNEV WNWQFQQAQWADKQAQEAWGKDGLWLQYYGARSAEIAEIWTEVFAEGTDQVQLPDRLVRVMSTQTGWLGLEEQILTAPLW TAEDPDRQPPYRSFDAYAVTGYFGASLGMQEQAPMVRAWLADSRERARDAGVQNGLRGAALAGYVEDHQFDIATAQALVE LQDGLNSGSQEGALNDLLARILPYHAKVAAEHDLELIMYEGGTHVVGHGPLVDDDALTAFFTHLNYSPEMGELYRKLLNA WPDIGGTLFGAYSDVSVPGRWGSWGNLRTLSDKNPRWDVLEAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93331; Mature: 93200
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEALITAVMMIGHSLIGPENPRMLQQLLQAGQENRPVVEFQIINGAPLRYNWEHADKA CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCHHHHC QGVNARTRLAEAPVDALIVTEAIPLANHLRWSDTEGAIEKFYSVAAQSNPNVTLYVQEGW CCCCHHHHHHHCCCCEEEHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCH HSLLSGTGEEVPFDDGGDVAWRSRLDNDLPHWQGVVEKVRSNTGGDIRLLPTGQALGRLA HHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH DAIETGTVPGLSRINDVFSDDIHPNDIGFYYLALVQYAVLTGTSPEGLPRVLKTEWGTPY HHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC KAPSADLALRLQEIAAGAATGSQARMTLPPDPVALPLEPGPAILNDETSVAALPSGKPIV CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCEECCCCCEEECCCCCCCC RKQPIAMNLAAIRDWSPQAPFLDHFKTARAWIGHLPGRWGGVTEEELRAAGYLDPDGWPL CCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEE AIPPELGSIGTVLLNDLPETANSLSGRYVVRFDGKGIVEAGGRAKNVRYGKNQVSFDFEP ECCCCCCCHHHHHHHHCHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCCEEEEEECC GPGAVDIRIQRSDRAGTGDYVRNITVVRERDLPAYDQGALFNPDWLDRIEGFAALRFMDW CCCEEEEEEEECCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH MDTNNSDQIGWEDRPRYRDYTWSTRGVPAEVLVTLANRVGADPWFTLPHMSDDTYVRNFA HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHH TLVRDGLDEDLKAYVEYSNEVWNWQFQQAQWADKQAQEAWGKDGLWLQYYGARSAEIAEI HHHHHCCCHHHHHHHHHCCHHCCEEEHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH WTEVFAEGTDQVQLPDRLVRVMSTQTGWLGLEEQILTAPLWTAEDPDRQPPYRSFDAYAV HHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEE TGYFGASLGMQEQAPMVRAWLADSRERARDAGVQNGLRGAALAGYVEDHQFDIATAQALV EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHH ELQDGLNSGSQEGALNDLLARILPYHAKVAAEHDLELIMYEGGTHVVGHGPLVDDDALTA HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCHHHHH FFTHLNYSPEMGELYRKLLNAWPDIGGTLFGAYSDVSVPGRWGSWGNLRTLSDKNPRWDV HHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCH LEAAR HCCCC >Mature Secondary Structure STEALITAVMMIGHSLIGPENPRMLQQLLQAGQENRPVVEFQIINGAPLRYNWEHADKA CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCHHHHC QGVNARTRLAEAPVDALIVTEAIPLANHLRWSDTEGAIEKFYSVAAQSNPNVTLYVQEGW CCCCHHHHHHHCCCCEEEHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCH HSLLSGTGEEVPFDDGGDVAWRSRLDNDLPHWQGVVEKVRSNTGGDIRLLPTGQALGRLA HHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH DAIETGTVPGLSRINDVFSDDIHPNDIGFYYLALVQYAVLTGTSPEGLPRVLKTEWGTPY HHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC KAPSADLALRLQEIAAGAATGSQARMTLPPDPVALPLEPGPAILNDETSVAALPSGKPIV CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCEECCCCCEEECCCCCCCC RKQPIAMNLAAIRDWSPQAPFLDHFKTARAWIGHLPGRWGGVTEEELRAAGYLDPDGWPL CCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEE AIPPELGSIGTVLLNDLPETANSLSGRYVVRFDGKGIVEAGGRAKNVRYGKNQVSFDFEP ECCCCCCCHHHHHHHHCHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCCEEEEEECC GPGAVDIRIQRSDRAGTGDYVRNITVVRERDLPAYDQGALFNPDWLDRIEGFAALRFMDW CCCEEEEEEEECCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH MDTNNSDQIGWEDRPRYRDYTWSTRGVPAEVLVTLANRVGADPWFTLPHMSDDTYVRNFA HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHH TLVRDGLDEDLKAYVEYSNEVWNWQFQQAQWADKQAQEAWGKDGLWLQYYGARSAEIAEI HHHHHCCCHHHHHHHHHCCHHCCEEEHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH WTEVFAEGTDQVQLPDRLVRVMSTQTGWLGLEEQILTAPLWTAEDPDRQPPYRSFDAYAV HHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEE TGYFGASLGMQEQAPMVRAWLADSRERARDAGVQNGLRGAALAGYVEDHQFDIATAQALV EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHH ELQDGLNSGSQEGALNDLLARILPYHAKVAAEHDLELIMYEGGTHVVGHGPLVDDDALTA HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCHHHHH FFTHLNYSPEMGELYRKLLNAWPDIGGTLFGAYSDVSVPGRWGSWGNLRTLSDKNPRWDV HHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCH LEAAR HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA