Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082103

Identifier: 99082103

GI number: 99082103

Start: 2378251

End: 2380536

Strand: Direct

Name: 99082103

Synonym: TM1040_2263

Alternate gene names: NA

Gene position: 2378251-2380536 (Clockwise)

Preceding gene: 99082102

Following gene: 99082106

Centisome position: 74.3

GC content: 61.46

Gene sequence:

>2286_bases
ATGAACAAGGCAATCACCGACGGTCTGCAACTGATGCCGCCCGCGTTTTCTCAGGGCCTTGGCGTCTGGTCCAGCGGCGA
TGGCACGCCCGGCTCTGACACTTATGACGGCGCCGCCAATGCGGCACTTGTGGCGGGGGATGCTGATTTTGGCGGCTGCC
TTGAGCTGCAGAAAACCGACAGCACCCAGCGCCTGCGCTACATGGGCGAGACCCCGATCCTGCCGGGCTGCTATCTGCGC
GTGACCGCCCGCGTCAAAGCCATGAGCGGTGCCCTTCCGACAGTGCGCATTGCAGGCTGGGCCGGTGCGGCGAACAACAG
CCATGTCTCCGGCGTCATCGAGAGCGGGCCGGGCACCACCCTCAGCGCCTATGGCGAGGTGGTCGAGGTGCAGGCCATCG
TCGGCACCGGCAGCCGATCCGGCGTTGATATGCCCTGGGGGCTGGACGCCGCCTATGGCCATCTCGGGCTGAACCTCACC
GGCGCCAATGGTGGTGTGATCCGGGTGGACGACTTCGTGATCGAGGACATCACCAGCGTCTTTTTGCGCGATATGCTGAG
CGTCGTTGATGTGACTGATTTTGGCGCCGTGGGCGATGGAGCCGCCGACTGCCACGCGGCATTTGAGGCCGCGGATGATG
CCGCCAATGGTCGGCGCATTCTGGTGCCCGATGGCGAATTTCGGATCAACAGCACGCTCTCGCTCAACCATGATGTGATC
TTTGAGGGCACGCTGTCGATGCCTGATAACGCCATGCTTTTGTTGACCAAAAGCTATGACTATCCGACCTATGCGGCGGC
GTTTGGCGATGAGGAGCTGGCCTTCAAGAAGGCGTTTCAGGCGCTGTTGAACAGTGTCGATCACGAAAGCCTCGATCTCG
GCGGGCGCAGCATCGCGCTCAGTGGTCCGATCGACATGCAGGCGGCGGTGCCAAATCGCACCAGCTACGCCACCCGCCGC
TATATCCGCAACGGCCAGTTTGCGGCGCAAGCGGGGGCGGCGTGGGATCACAACGTGATCACCGCACAGGCGACCTATAG
CGCCTCTGACAAGAAAACGCTGACCAATGTGGCCAATATTTCCGCCATCCCCGTGGGGGCGCTGGTCGAGGGCGCGGGCG
TGGGCCGCGAGGTTTACGTGACGGCCAAAAACTTAGGTGCAAGCCGCCTGACCCTGAGCCAGCCTTTGTATGACGCCGAA
GGCACGCAGAACTTCACCTTCACCGCGTTCAAATACATGCTGGATTTTTCCGGATTCTCCTCACTCAAGAAATTCGGCAT
CTCTGGCGTGGAGTTTCAATGCAATGGCGTCGCCAGCGCGCTACGGCTGTCGCCTGCGGGCACCGTGTTTGCCCTGCACG
ACTGTTTCTTCACCCGTCCCAGCGCGCGCGGGATCACCTCGATTGGCAGCGGCTGTCAGGGTATGCTGGTCGACAACTGC
CAGTTCCTGTCGGACGAGGATGCAGCGGATGTGGCGGATCGCGAGACCATCGCGCTCAATGTGAACTCCAACGATGTGAA
GCTGCGCCACAACCGCGCCACGCGGTTCCTGCATTGGGCGGTGATGGCCGGATCGAACCACACGGTGACCGGCAACCATT
TCTTTCAGGGTGACAGCGTGGCGGGTGGCATCCGCACGGCGGGCATCGTGGTTACAGACACCTATGCCTCGCATACGATT
TCGGAAAACTACATCGACAACTGCTTTATCGAGTGGACCAACGAATATGACGCAAACCCCGATTTCAATGGCGGGTTCTC
CTTTGCGGCCATGTCGATCACCGACAATGTCTTCCTCAGCGGCGATGTAGCGAGCTGGTTCAGCTACATCGTGATAAAGC
CATATGGCAGCGGGCATTTCCTCAACGGGGTGTCCGTGACCGGCAACAAGTTCCGCTCGATCAACGGCACCATCGACCGC
GCCGAACGAGTCGATACGAGCTTTGCCGACCTTGATTTCAGCCGCGCCAAGGACGTCTTCTTTGACGCCAACAGTTTCCA
CAACGTCACCACCCAGAGCCGAAACCCCCTGAGGGTGGAATTCGACCAGAACACCGCCGCAAGCACCTGGACCATCGCGA
CGGGCGGCGCGCTGCCGTTTGACGGCCACAGCCGCGCCGTGGATGCGGTGATCGTGGAAGGCTCGCTTCGAAACAGCGGC
GGCTCGGTGGTCTATCCCGGCCACTACGTGCGCACGCAGGAAGGCGGCAGCAACAACAAGATCGATCTCGTCTGGGAACA
GGCCGTGCGCGGCACCGTGCGCACGTTGATCCGGATCGACCGCTAG

Upstream 100 bases:

>100_bases
TGTTGCGCGGGCTGCGTACGCCCTCCTGAGCGGGATTTAAGACCGGACTGCTAGAACCTTTCCTCACTCCCGACGTGGTG
GAACAGGAAAGGGTCTACAT

Downstream 100 bases:

>100_bases
GGCACGAGGCCCAGATCCGCCGGCGTGAGTTGATAGGCCTTGCCAAAGCCGCCGTTCAAAAACGCCTCCCGGATCTGGAA
ACGCACAAAATGAAAATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 761; Mature: 761

Protein sequence:

>761_residues
MNKAITDGLQLMPPAFSQGLGVWSSGDGTPGSDTYDGAANAALVAGDADFGGCLELQKTDSTQRLRYMGETPILPGCYLR
VTARVKAMSGALPTVRIAGWAGAANNSHVSGVIESGPGTTLSAYGEVVEVQAIVGTGSRSGVDMPWGLDAAYGHLGLNLT
GANGGVIRVDDFVIEDITSVFLRDMLSVVDVTDFGAVGDGAADCHAAFEAADDAANGRRILVPDGEFRINSTLSLNHDVI
FEGTLSMPDNAMLLLTKSYDYPTYAAAFGDEELAFKKAFQALLNSVDHESLDLGGRSIALSGPIDMQAAVPNRTSYATRR
YIRNGQFAAQAGAAWDHNVITAQATYSASDKKTLTNVANISAIPVGALVEGAGVGREVYVTAKNLGASRLTLSQPLYDAE
GTQNFTFTAFKYMLDFSGFSSLKKFGISGVEFQCNGVASALRLSPAGTVFALHDCFFTRPSARGITSIGSGCQGMLVDNC
QFLSDEDAADVADRETIALNVNSNDVKLRHNRATRFLHWAVMAGSNHTVTGNHFFQGDSVAGGIRTAGIVVTDTYASHTI
SENYIDNCFIEWTNEYDANPDFNGGFSFAAMSITDNVFLSGDVASWFSYIVIKPYGSGHFLNGVSVTGNKFRSINGTIDR
AERVDTSFADLDFSRAKDVFFDANSFHNVTTQSRNPLRVEFDQNTAASTWTIATGGALPFDGHSRAVDAVIVEGSLRNSG
GSVVYPGHYVRTQEGGSNNKIDLVWEQAVRGTVRTLIRIDR

Sequences:

>Translated_761_residues
MNKAITDGLQLMPPAFSQGLGVWSSGDGTPGSDTYDGAANAALVAGDADFGGCLELQKTDSTQRLRYMGETPILPGCYLR
VTARVKAMSGALPTVRIAGWAGAANNSHVSGVIESGPGTTLSAYGEVVEVQAIVGTGSRSGVDMPWGLDAAYGHLGLNLT
GANGGVIRVDDFVIEDITSVFLRDMLSVVDVTDFGAVGDGAADCHAAFEAADDAANGRRILVPDGEFRINSTLSLNHDVI
FEGTLSMPDNAMLLLTKSYDYPTYAAAFGDEELAFKKAFQALLNSVDHESLDLGGRSIALSGPIDMQAAVPNRTSYATRR
YIRNGQFAAQAGAAWDHNVITAQATYSASDKKTLTNVANISAIPVGALVEGAGVGREVYVTAKNLGASRLTLSQPLYDAE
GTQNFTFTAFKYMLDFSGFSSLKKFGISGVEFQCNGVASALRLSPAGTVFALHDCFFTRPSARGITSIGSGCQGMLVDNC
QFLSDEDAADVADRETIALNVNSNDVKLRHNRATRFLHWAVMAGSNHTVTGNHFFQGDSVAGGIRTAGIVVTDTYASHTI
SENYIDNCFIEWTNEYDANPDFNGGFSFAAMSITDNVFLSGDVASWFSYIVIKPYGSGHFLNGVSVTGNKFRSINGTIDR
AERVDTSFADLDFSRAKDVFFDANSFHNVTTQSRNPLRVEFDQNTAASTWTIATGGALPFDGHSRAVDAVIVEGSLRNSG
GSVVYPGHYVRTQEGGSNNKIDLVWEQAVRGTVRTLIRIDR
>Mature_761_residues
MNKAITDGLQLMPPAFSQGLGVWSSGDGTPGSDTYDGAANAALVAGDADFGGCLELQKTDSTQRLRYMGETPILPGCYLR
VTARVKAMSGALPTVRIAGWAGAANNSHVSGVIESGPGTTLSAYGEVVEVQAIVGTGSRSGVDMPWGLDAAYGHLGLNLT
GANGGVIRVDDFVIEDITSVFLRDMLSVVDVTDFGAVGDGAADCHAAFEAADDAANGRRILVPDGEFRINSTLSLNHDVI
FEGTLSMPDNAMLLLTKSYDYPTYAAAFGDEELAFKKAFQALLNSVDHESLDLGGRSIALSGPIDMQAAVPNRTSYATRR
YIRNGQFAAQAGAAWDHNVITAQATYSASDKKTLTNVANISAIPVGALVEGAGVGREVYVTAKNLGASRLTLSQPLYDAE
GTQNFTFTAFKYMLDFSGFSSLKKFGISGVEFQCNGVASALRLSPAGTVFALHDCFFTRPSARGITSIGSGCQGMLVDNC
QFLSDEDAADVADRETIALNVNSNDVKLRHNRATRFLHWAVMAGSNHTVTGNHFFQGDSVAGGIRTAGIVVTDTYASHTI
SENYIDNCFIEWTNEYDANPDFNGGFSFAAMSITDNVFLSGDVASWFSYIVIKPYGSGHFLNGVSVTGNKFRSINGTIDR
AERVDTSFADLDFSRAKDVFFDANSFHNVTTQSRNPLRVEFDQNTAASTWTIATGGALPFDGHSRAVDAVIVEGSLRNSG
GSVVYPGHYVRTQEGGSNNKIDLVWEQAVRGTVRTLIRIDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81067; Mature: 81067

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAITDGLQLMPPAFSQGLGVWSSGDGTPGSDTYDGAANAALVAGDADFGGCLELQKTD
CCCCCCCCCHHCCCHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC
STQRLRYMGETPILPGCYLRVTARVKAMSGALPTVRIAGWAGAANNSHVSGVIESGPGTT
CHHHHHCCCCCCCCCCEEEEEEEEEEHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCE
LSAYGEVVEVQAIVGTGSRSGVDMPWGLDAAYGHLGLNLTGANGGVIRVDDFVIEDITSV
EHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHH
FLRDMLSVVDVTDFGAVGDGAADCHAAFEAADDAANGRRILVPDGEFRINSTLSLNHDVI
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEECCCEE
FEGTLSMPDNAMLLLTKSYDYPTYAAAFGDEELAFKKAFQALLNSVDHESLDLGGRSIAL
EEEECCCCCCEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
SGPIDMQAAVPNRTSYATRRYIRNGQFAAQAGAAWDHNVITAQATYSASDKKTLTNVANI
ECCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
SAIPVGALVEGAGVGREVYVTAKNLGASRLTLSQPLYDAEGTQNFTFTAFKYMLDFSGFS
CCCCHHHEEECCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEHEEEEEHHHHCCHH
SLKKFGISGVEFQCNGVASALRLSPAGTVFALHDCFFTRPSARGITSIGSGCQGMLVDNC
HHHHHCCCCEEEEECCCCHHEEECCCCCEEEEEHHHCCCCCCCCCHHHCCCCCEEEECCE
QFLSDEDAADVADRETIALNVNSNDVKLRHNRATRFLHWAVMAGSNHTVTGNHFFQGDSV
EECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEECCCCEEECCEEECCCCC
AGGIRTAGIVVTDTYASHTISENYIDNCFIEWTNEYDANPDFNGGFSFAAMSITDNVFLS
CCCCEECCEEEEECCHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEE
GDVASWFSYIVIKPYGSGHFLNGVSVTGNKFRSINGTIDRAERVDTSFADLDFSRAKDVF
CCHHHCEEEEEEEECCCCCEECCEEECCCCEEECCCCHHHHHHCCCCHHCCCHHHCCCEE
FDANSFHNVTTQSRNPLRVEFDQNTAASTWTIATGGALPFDGHSRAVDAVIVEGSLRNSG
EECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
GSVVYPGHYVRTQEGGSNNKIDLVWEQAVRGTVRTLIRIDR
CCEEECCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHEECC
>Mature Secondary Structure
MNKAITDGLQLMPPAFSQGLGVWSSGDGTPGSDTYDGAANAALVAGDADFGGCLELQKTD
CCCCCCCCCHHCCCHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC
STQRLRYMGETPILPGCYLRVTARVKAMSGALPTVRIAGWAGAANNSHVSGVIESGPGTT
CHHHHHCCCCCCCCCCEEEEEEEEEEHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCE
LSAYGEVVEVQAIVGTGSRSGVDMPWGLDAAYGHLGLNLTGANGGVIRVDDFVIEDITSV
EHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHH
FLRDMLSVVDVTDFGAVGDGAADCHAAFEAADDAANGRRILVPDGEFRINSTLSLNHDVI
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEECCCEE
FEGTLSMPDNAMLLLTKSYDYPTYAAAFGDEELAFKKAFQALLNSVDHESLDLGGRSIAL
EEEECCCCCCEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
SGPIDMQAAVPNRTSYATRRYIRNGQFAAQAGAAWDHNVITAQATYSASDKKTLTNVANI
ECCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
SAIPVGALVEGAGVGREVYVTAKNLGASRLTLSQPLYDAEGTQNFTFTAFKYMLDFSGFS
CCCCHHHEEECCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEHEEEEEHHHHCCHH
SLKKFGISGVEFQCNGVASALRLSPAGTVFALHDCFFTRPSARGITSIGSGCQGMLVDNC
HHHHHCCCCEEEEECCCCHHEEECCCCCEEEEEHHHCCCCCCCCCHHHCCCCCEEEECCE
QFLSDEDAADVADRETIALNVNSNDVKLRHNRATRFLHWAVMAGSNHTVTGNHFFQGDSV
EECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEECCCCEEECCEEECCCCC
AGGIRTAGIVVTDTYASHTISENYIDNCFIEWTNEYDANPDFNGGFSFAAMSITDNVFLS
CCCCEECCEEEEECCHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEE
GDVASWFSYIVIKPYGSGHFLNGVSVTGNKFRSINGTIDRAERVDTSFADLDFSRAKDVF
CCHHHCEEEEEEEECCCCCEECCEEECCCCEEECCCCHHHHHHCCCCHHCCCHHHCCCEE
FDANSFHNVTTQSRNPLRVEFDQNTAASTWTIATGGALPFDGHSRAVDAVIVEGSLRNSG
EECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
GSVVYPGHYVRTQEGGSNNKIDLVWEQAVRGTVRTLIRIDR
CCEEECCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA