| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082100
Identifier: 99082100
GI number: 99082100
Start: 2375180
End: 2375602
Strand: Reverse
Name: 99082100
Synonym: TM1040_2260
Alternate gene names: NA
Gene position: 2375602-2375180 (Counterclockwise)
Preceding gene: 99082104
Following gene: 99082095
Centisome position: 74.22
GC content: 60.52
Gene sequence:
>423_bases ATGACAGAAGAAACGATCCAGCTGCTGACCCCACAGGACTGCCTTGTGGCGGTAATGGTTGCGGTGTCGGCCTCGGACGA GGACATTCGCACCGCCGAGCTGGTGAAGATCCAGAATGCGATCAACATGCTGCCGATCTTTGCCGAGTATGACGCGGACC GGATTGCTGCTGTCTCACGCACCGTGTTTGACCTCTTTGAGCAGGAAGATGGGCTGGATGCGCTGTTTGGGCTGGTCCGT GAGATCCTGCCGGAGCGTCTGAATGAAACCTGCTATGCGCTGGCCTGCGATGTGGCGGCGGCAGATGGCAAACTCAACGA GGGCGAGCTGCGGCTTTTGGAAGAAATCCGCTACGAGATCAACGTGGACCGCCTGCATGCGGCCGCGATCGAGCGCGGGG CGCGTGCGCGCCACATGGTCTGA
Upstream 100 bases:
>100_bases GAAAACCACTTTTCGCAAGGGCTCTTGTTGTATGCGCGGCAGGGCGGGCTTATCCTAAGGGCGCGACAACGCAAGGACTT CGGCACAAAGGACGCCCAAG
Downstream 100 bases:
>100_bases GCCGCGCGATCGGAGACGGGATGCGAGGCTCTGCCTCGCGCTCCGGGATATTTGCGGTTAGAAGAATGAGCAGAACAGGG CGCGGGATGGCGCCCTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTEETIQLLTPQDCLVAVMVAVSASDEDIRTAELVKIQNAINMLPIFAEYDADRIAAVSRTVFDLFEQEDGLDALFGLVR EILPERLNETCYALACDVAAADGKLNEGELRLLEEIRYEINVDRLHAAAIERGARARHMV
Sequences:
>Translated_140_residues MTEETIQLLTPQDCLVAVMVAVSASDEDIRTAELVKIQNAINMLPIFAEYDADRIAAVSRTVFDLFEQEDGLDALFGLVR EILPERLNETCYALACDVAAADGKLNEGELRLLEEIRYEINVDRLHAAAIERGARARHMV >Mature_139_residues TEETIQLLTPQDCLVAVMVAVSASDEDIRTAELVKIQNAINMLPIFAEYDADRIAAVSRTVFDLFEQEDGLDALFGLVRE ILPERLNETCYALACDVAAADGKLNEGELRLLEEIRYEINVDRLHAAAIERGARARHMV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15606; Mature: 15475
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEETIQLLTPQDCLVAVMVAVSASDEDIRTAELVKIQNAINMLPIFAEYDADRIAAVSR CCCCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH TVFDLFEQEDGLDALFGLVREILPERLNETCYALACDVAAADGKLNEGELRLLEEIRYEI HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC NVDRLHAAAIERGARARHMV CHHHHHHHHHHHCCHHCCCC >Mature Secondary Structure TEETIQLLTPQDCLVAVMVAVSASDEDIRTAELVKIQNAINMLPIFAEYDADRIAAVSR CCCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH TVFDLFEQEDGLDALFGLVREILPERLNETCYALACDVAAADGKLNEGELRLLEEIRYEI HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC NVDRLHAAAIERGARARHMV CHHHHHHHHHHHCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA