Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082063

Identifier: 99082063

GI number: 99082063

Start: 2334529

End: 2335020

Strand: Direct

Name: 99082063

Synonym: TM1040_2223

Alternate gene names: NA

Gene position: 2334529-2335020 (Clockwise)

Preceding gene: 99082062

Following gene: 99082064

Centisome position: 72.93

GC content: 63.21

Gene sequence:

>492_bases
ATGTCCCGTTCGCTCGCTCTGTTTGCCATTGGCCTTGTGTTTGGGGGCGGTATCGGATTTCTGACCGCCGCAGGAAACGG
CGTCACCCTGGATGGGCATGATCACTCTGATCCTGCGCACCACGGTGGCGGATCCGGCGTGGCCACGCACGACCATTCCG
CACTGGTGAATTCCCCCTCTGGTCCAGAGGCGCCCTCGGTCGAGATCCACGTCACGCCCGACGCGATGTCCGGTTGGAAC
CTGCAAGTGGAGACCAAGAACTTTCGCTTCGCCCCGGAGCATGCCTCGGGGGCCGATCAACCCGGCGAGGGCCATGCACA
TGTCTATGTGAACGGCGAGAAAATCACGCGCCTCTATGGGTCCTGGCTGCATCTTGCGGCCTTGCCCGAAGGCGAGACCG
AGGTGAAAGTCTCTCTGAGTTCCAACAGCCATGGCACCATCGCCGTCGACGGCGTGCCGGTCGAGGCGCGCGTTGTCGTG
AGTGCCCCCTGA

Upstream 100 bases:

>100_bases
TCTCCAGGCTGTCCCCGCTGCGTCATTGCATGCAGCGGGGACAGCCTGCGAGACTGCGCTGCAGCCTCAAATACGTTTAC
TTTCCGGAGAATGACCTTCC

Downstream 100 bases:

>100_bases
TGGGGCACTCTTGACCTCTTTGCGCGGGCGTCCCATTGCGGGGCGACGGATTTAACGGATGGAGAGCCTTCTATGCTCCA
GCTCAGTCTGATCGGGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIHVTPDAMSGWN
LQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVV
SAP

Sequences:

>Translated_163_residues
MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIHVTPDAMSGWN
LQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVV
SAP
>Mature_162_residues
SRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIHVTPDAMSGWNL
QVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVVS
AP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16725; Mature: 16593

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPS
CCCCEEHEEEEEHHCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEECCC
GPEAPSVEIHVTPDAMSGWNLQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYG
CCCCCEEEEEECCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECC
SWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVVSAP
CEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECC
>Mature Secondary Structure 
SRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPS
CCCEEHEEEEEHHCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEECCC
GPEAPSVEIHVTPDAMSGWNLQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYG
CCCCCEEEEEECCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECC
SWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVVSAP
CEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA