| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082063
Identifier: 99082063
GI number: 99082063
Start: 2334529
End: 2335020
Strand: Direct
Name: 99082063
Synonym: TM1040_2223
Alternate gene names: NA
Gene position: 2334529-2335020 (Clockwise)
Preceding gene: 99082062
Following gene: 99082064
Centisome position: 72.93
GC content: 63.21
Gene sequence:
>492_bases ATGTCCCGTTCGCTCGCTCTGTTTGCCATTGGCCTTGTGTTTGGGGGCGGTATCGGATTTCTGACCGCCGCAGGAAACGG CGTCACCCTGGATGGGCATGATCACTCTGATCCTGCGCACCACGGTGGCGGATCCGGCGTGGCCACGCACGACCATTCCG CACTGGTGAATTCCCCCTCTGGTCCAGAGGCGCCCTCGGTCGAGATCCACGTCACGCCCGACGCGATGTCCGGTTGGAAC CTGCAAGTGGAGACCAAGAACTTTCGCTTCGCCCCGGAGCATGCCTCGGGGGCCGATCAACCCGGCGAGGGCCATGCACA TGTCTATGTGAACGGCGAGAAAATCACGCGCCTCTATGGGTCCTGGCTGCATCTTGCGGCCTTGCCCGAAGGCGAGACCG AGGTGAAAGTCTCTCTGAGTTCCAACAGCCATGGCACCATCGCCGTCGACGGCGTGCCGGTCGAGGCGCGCGTTGTCGTG AGTGCCCCCTGA
Upstream 100 bases:
>100_bases TCTCCAGGCTGTCCCCGCTGCGTCATTGCATGCAGCGGGGACAGCCTGCGAGACTGCGCTGCAGCCTCAAATACGTTTAC TTTCCGGAGAATGACCTTCC
Downstream 100 bases:
>100_bases TGGGGCACTCTTGACCTCTTTGCGCGGGCGTCCCATTGCGGGGCGACGGATTTAACGGATGGAGAGCCTTCTATGCTCCA GCTCAGTCTGATCGGGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIHVTPDAMSGWN LQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVV SAP
Sequences:
>Translated_163_residues MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIHVTPDAMSGWN LQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVV SAP >Mature_162_residues SRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIHVTPDAMSGWNL QVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVVS AP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16725; Mature: 16593
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPS CCCCEEHEEEEEHHCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEECCC GPEAPSVEIHVTPDAMSGWNLQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYG CCCCCEEEEEECCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECC SWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVVSAP CEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECC >Mature Secondary Structure SRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPS CCCEEHEEEEEHHCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEECCC GPEAPSVEIHVTPDAMSGWNLQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYG CCCCCEEEEEECCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECC SWLHLAALPEGETEVKVSLSSNSHGTIAVDGVPVEARVVVSAP CEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA