| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081993
Identifier: 99081993
GI number: 99081993
Start: 2261229
End: 2261834
Strand: Direct
Name: 99081993
Synonym: TM1040_2153
Alternate gene names: NA
Gene position: 2261229-2261834 (Clockwise)
Preceding gene: 99081992
Following gene: 99081996
Centisome position: 70.64
GC content: 56.44
Gene sequence:
>606_bases ATGTTCAGAAAAATCGCACATAAGTTTCGGGCGTTTCGCCGCGATGAAGAGGGCAACATTGCCGTCGAGGCCGCGCTCTA CCTGCCACTCTTGCTGTTTGTCTTTGCGGCGACCTACACGCTGTTTGACCTGTTCCGTCAGGAAACCGTCAACACCAAGG CCGCTTATACCGTCTCAGACCTGATTTCGCGGGAAACCACGGCGCTAAACGACGAATACATCAACAGTATCTATACCCTC GGCAAGCTGATGGCGCGCGCGGGCTCTGATATGTCGATGCGCATTTCGGTGATCCGCTGGGACGCTGCGGATGATCGCTA TTATGTCGATTGGTCCGTCGAACGTGGCAACCAGCTCGACATCTGGACGGATGCCACCGTCACCGCGATCAACGACAAGC TCCCCACCATGCCCGATCAGGAACGTGTCATCGTGGTCGAGACATGGAACAACGTCGACCCGGCGTTCAAAATCGGGATC GGGCAGCGTGAAATCTACAATCTGATCTTCACCCGTCCCCGTTTCGCCTCCTTGGTGGCCTTTGAAGGCACCGTCGTAAG CGATGGCACGGTGCATGACGATGACGTGACGGACACGGGTTCCTGA
Upstream 100 bases:
>100_bases GTTTCCGCATTGGGGTCTCGGCAAAGCCATTCGCAAAGATGACGATGGCCGCCTGAACCTCTTTGCCTCCAGCGCCTTTG TTCAGGAGCCTCAGTGATCC
Downstream 100 bases:
>100_bases TCGCCGCAGCGCGCAAGCGTTCGAGTTTGAATTGCAAAGGCCGCCGGAGCTTGAGCCCGGCGGCCTTTGCTGCTCTGTCA AAGATGGGACGCGGATGACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDLFRQETVNTKAAYTVSDLISRETTALNDEYINSIYTL GKLMARAGSDMSMRISVIRWDAADDRYYVDWSVERGNQLDIWTDATVTAINDKLPTMPDQERVIVVETWNNVDPAFKIGI GQREIYNLIFTRPRFASLVAFEGTVVSDGTVHDDDVTDTGS
Sequences:
>Translated_201_residues MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDLFRQETVNTKAAYTVSDLISRETTALNDEYINSIYTL GKLMARAGSDMSMRISVIRWDAADDRYYVDWSVERGNQLDIWTDATVTAINDKLPTMPDQERVIVVETWNNVDPAFKIGI GQREIYNLIFTRPRFASLVAFEGTVVSDGTVHDDDVTDTGS >Mature_201_residues MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDLFRQETVNTKAAYTVSDLISRETTALNDEYINSIYTL GKLMARAGSDMSMRISVIRWDAADDRYYVDWSVERGNQLDIWTDATVTAINDKLPTMPDQERVIVVETWNNVDPAFKIGI GQREIYNLIFTRPRFASLVAFEGTVVSDGTVHDDDVTDTGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22883; Mature: 22883
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDLFRQETVNTKAAYTVSD CHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LISRETTALNDEYINSIYTLGKLMARAGSDMSMRISVIRWDAADDRYYVDWSVERGNQLD HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEE IWTDATVTAINDKLPTMPDQERVIVVETWNNVDPAFKIGIGQREIYNLIFTRPRFASLVA EECCCEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHHHHHCCCCHHEEEE FEGTVVSDGTVHDDDVTDTGS ECCEEEECCEECCCCCCCCCC >Mature Secondary Structure MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDLFRQETVNTKAAYTVSD CHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LISRETTALNDEYINSIYTLGKLMARAGSDMSMRISVIRWDAADDRYYVDWSVERGNQLD HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEE IWTDATVTAINDKLPTMPDQERVIVVETWNNVDPAFKIGIGQREIYNLIFTRPRFASLVA EECCCEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHHHHHCCCCHHEEEE FEGTVVSDGTVHDDDVTDTGS ECCEEEECCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA