| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081955
Identifier: 99081955
GI number: 99081955
Start: 2221360
End: 2222301
Strand: Direct
Name: 99081955
Synonym: TM1040_2115
Alternate gene names: NA
Gene position: 2221360-2222301 (Clockwise)
Preceding gene: 99081954
Following gene: 99081956
Centisome position: 69.4
GC content: 58.49
Gene sequence:
>942_bases ATGCTGGGAAAAACCGCAAATGGTCTGTTCTGGATGTCGCGATACCTTGAACGGGCAGAAAACACCGCACGCCTGATCGA AACAGGTCAGCGCATCGCGCTCACACGGCTCGGAAGCGCCGAGGATGAGTGGGTTTCCATCCTGCAATCGGCCGGGTCAC TGGGCGGCTTTCGAGAGGCCTATGACACCCATGGCCAGGATGCGGCAGTGGACTGGATGCTGCGTGGCAAGGACAACCCC TCCTCCATCATGTCGTCGATTGCGTCCGCCCGCCAGAATGCACGGCTGGTGCGTGCGGCGATCACGGGAGAGGTCTGGGA AGCGATCAATGCCACTTACATGACCGCAAGCGACCTGCTCGCACGCAAAGTGAGCGCACGCGACCTGCCGGATGTTCTGG CGTCGATCCGCCAGCACACCGCACTGATGCGCGGCATGGTCCATGGCACGATGCTGCGCAATGACATCTACGATTTTCTG CGCATCGGCACCTTCCTTGAGCGGGCCGACAACACGGCACGCATCCTCGATGTGAAATATTACGTGCTGCTGCCCTCCGT GAGCGCCGTGGGCAGTTCCATCGACAATGTGCAATGGGAGAGCATCCTGCGCTCGGTCTCTGCGCGCGGCGGCTTTCGCA TGGAATACGGCGCCGATGGCGGACCGCAGGAAATCGCGCATTTCCTGATTTTCGACAAGCGCATGCCACGCAGCCTTGCG TTTTGCGTCAGCAAAATCAAAGACAACCTGCGCTATCTCAATGCAGGACAGCCGACCCCCTCGCCATCCCAAGAGCTCGT GACCCATTTGGAGAACACCTACCTGTCTCATGGGATCGAAGAGGTCTTTGACTACGGCCTGCACGAATTCATCGAGAAGA TGCTCGAACTCCTCCTGGAACTCGCACATCAAATCCAACTCGACTATCGCTTCTATGAGTAA
Upstream 100 bases:
>100_bases GGTGGTCTCACCCGGGTTGCGCTCAAGAAAGGGTCGCTCGTGGTCAACTCCTCGCAGGGAGGTGGCACGAAGGATACATG GGTGCTGGAGGACTGACGCA
Downstream 100 bases:
>100_bases GCCATGCGCCTGACCATTCATCACACAACCCGCTATCGCTTTGACGAACCGGTCTCCTTTGGCCTGCAACAGCTTCGTAA AACGCCAAAAACCAACACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNP SSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE
Sequences:
>Translated_313_residues MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNP SSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE >Mature_313_residues MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNP SSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE
Specific function: Unknown
COG id: COG2307
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35216; Mature: 35216
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREA CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCHHHHHHHHHHHCCCCCHHHH YDTHGQDAAVDWMLRGKDNPSSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLL HHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFLRIGTFLERADNTARILDVKY HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEH YVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA HHEECCHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHH FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLE HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAHQIQLDYRFYE HHHHHHHHCEECC >Mature Secondary Structure MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREA CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCHHHHHHHHHHHCCCCCHHHH YDTHGQDAAVDWMLRGKDNPSSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLL HHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFLRIGTFLERADNTARILDVKY HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEH YVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA HHEECCHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHH FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLE HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAHQIQLDYRFYE HHHHHHHHCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA