Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081955

Identifier: 99081955

GI number: 99081955

Start: 2221360

End: 2222301

Strand: Direct

Name: 99081955

Synonym: TM1040_2115

Alternate gene names: NA

Gene position: 2221360-2222301 (Clockwise)

Preceding gene: 99081954

Following gene: 99081956

Centisome position: 69.4

GC content: 58.49

Gene sequence:

>942_bases
ATGCTGGGAAAAACCGCAAATGGTCTGTTCTGGATGTCGCGATACCTTGAACGGGCAGAAAACACCGCACGCCTGATCGA
AACAGGTCAGCGCATCGCGCTCACACGGCTCGGAAGCGCCGAGGATGAGTGGGTTTCCATCCTGCAATCGGCCGGGTCAC
TGGGCGGCTTTCGAGAGGCCTATGACACCCATGGCCAGGATGCGGCAGTGGACTGGATGCTGCGTGGCAAGGACAACCCC
TCCTCCATCATGTCGTCGATTGCGTCCGCCCGCCAGAATGCACGGCTGGTGCGTGCGGCGATCACGGGAGAGGTCTGGGA
AGCGATCAATGCCACTTACATGACCGCAAGCGACCTGCTCGCACGCAAAGTGAGCGCACGCGACCTGCCGGATGTTCTGG
CGTCGATCCGCCAGCACACCGCACTGATGCGCGGCATGGTCCATGGCACGATGCTGCGCAATGACATCTACGATTTTCTG
CGCATCGGCACCTTCCTTGAGCGGGCCGACAACACGGCACGCATCCTCGATGTGAAATATTACGTGCTGCTGCCCTCCGT
GAGCGCCGTGGGCAGTTCCATCGACAATGTGCAATGGGAGAGCATCCTGCGCTCGGTCTCTGCGCGCGGCGGCTTTCGCA
TGGAATACGGCGCCGATGGCGGACCGCAGGAAATCGCGCATTTCCTGATTTTCGACAAGCGCATGCCACGCAGCCTTGCG
TTTTGCGTCAGCAAAATCAAAGACAACCTGCGCTATCTCAATGCAGGACAGCCGACCCCCTCGCCATCCCAAGAGCTCGT
GACCCATTTGGAGAACACCTACCTGTCTCATGGGATCGAAGAGGTCTTTGACTACGGCCTGCACGAATTCATCGAGAAGA
TGCTCGAACTCCTCCTGGAACTCGCACATCAAATCCAACTCGACTATCGCTTCTATGAGTAA

Upstream 100 bases:

>100_bases
GGTGGTCTCACCCGGGTTGCGCTCAAGAAAGGGTCGCTCGTGGTCAACTCCTCGCAGGGAGGTGGCACGAAGGATACATG
GGTGCTGGAGGACTGACGCA

Downstream 100 bases:

>100_bases
GCCATGCGCCTGACCATTCATCACACAACCCGCTATCGCTTTGACGAACCGGTCTCCTTTGGCCTGCAACAGCTTCGTAA
AACGCCAAAAACCAACACCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNP
SSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL
RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA
FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE

Sequences:

>Translated_313_residues
MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNP
SSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL
RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA
FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE
>Mature_313_residues
MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNP
SSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL
RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA
FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE

Specific function: Unknown

COG id: COG2307

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35216; Mature: 35216

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCHHHHHHHHHHHCCCCCHHHH
YDTHGQDAAVDWMLRGKDNPSSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLL
HHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFLRIGTFLERADNTARILDVKY
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEH
YVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA
HHEECCHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHH
FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLE
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAHQIQLDYRFYE
HHHHHHHHCEECC
>Mature Secondary Structure
MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCHHHHHHHHHHHCCCCCHHHH
YDTHGQDAAVDWMLRGKDNPSSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLL
HHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFLRIGTFLERADNTARILDVKY
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEH
YVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGADGGPQEIAHFLIFDKRMPRSLA
HHEECCHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHH
FCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIEEVFDYGLHEFIEKMLELLLE
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAHQIQLDYRFYE
HHHHHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA