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The map label for this gene is ybaO [H]

Identifier: 99081944

GI number: 99081944

Start: 2209885

End: 2210346

Strand: Direct

Name: ybaO [H]

Synonym: TM1040_2104

Alternate gene names: 99081944

Gene position: 2209885-2210346 (Clockwise)

Preceding gene: 99081938

Following gene: 99081951

Centisome position: 69.04

GC content: 62.34

Gene sequence:

>462_bases
ATGTCGAAGAACTTAGATCAGATTGACCGCGACCTTTTGCGCGCCCTGCAGCGTGATGGCAGCCTTTCGCAACGCGACCT
CGCGCAGCGAGTCGGCCTTTCGCAGAATGCCTGCTGGCGACGGCTCAAGGCGCTGCAGGACAAGGGCATCCTGCGCGGCA
CCCGGGCCGAGCTGGACCGCAGCCAGCTCGATCTCGGTCTGGTGGTGTTTGTCATGTTGCGCACACGGCATCACTCCGCA
GAGTGGCTGGCGCAGTTTCGCCGCCATGTGCTGACGATCCCGGAAGTGGTGGATTTTCACCGCATCGGGGGCGACTACGA
CTACCAGCTGAAGGTGGTGACTCGGGATATGGCGACCTACGACAAGGTCTACCAACGGCTGATCGCGGGCGTCGAGCTCG
ATAGCGTGACGTCCTATTTCGCCATGGAAGCCATTGCCGAAGGACGCCCGCTGCCGGTCTGA

Upstream 100 bases:

>100_bases
GCCCTCATTGCTATTTCTGCAATGATAGACCACCTATGAGCGTTCATTTTCACCTAAGTTCACGGGTGACAGCGGTATAT
CCATTTCATATGATCGATGA

Downstream 100 bases:

>100_bases
GGGGCACACGCCCGTCACCACAACGCGTGTTCACACCGCATGACCTTAAGGGGTGAGAACCAGCTTCTTGCCCACCGCCG
TCGGCGTCTCGCGATAATCA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKALQDKGILRGTRAELDRSQLDLGLVVFVMLRTRHHSA
EWLAQFRRHVLTIPEVVDFHRIGGDYDYQLKVVTRDMATYDKVYQRLIAGVELDSVTSYFAMEAIAEGRPLPV

Sequences:

>Translated_153_residues
MSKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKALQDKGILRGTRAELDRSQLDLGLVVFVMLRTRHHSA
EWLAQFRRHVLTIPEVVDFHRIGGDYDYQLKVVTRDMATYDKVYQRLIAGVELDSVTSYFAMEAIAEGRPLPV
>Mature_152_residues
SKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKALQDKGILRGTRAELDRSQLDLGLVVFVMLRTRHHSAE
WLAQFRRHVLTIPEVVDFHRIGGDYDYQLKVVTRDMATYDKVYQRLIAGVELDSVTSYFAMEAIAEGRPLPV

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=48, Blast_Score=142, Evalue=7e-36,
Organism=Escherichia coli, GI1787116, Length=147, Percent_Identity=34.0136054421769, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17625; Mature: 17493

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKALQDKGILRGTRAELDR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
SQLDLGLVVFVMLRTRHHSAEWLAQFRRHVLTIPEVVDFHRIGGDYDYQLKVVTRDMATY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
DKVYQRLIAGVELDSVTSYFAMEAIAEGRPLPV
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKALQDKGILRGTRAELDR
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
SQLDLGLVVFVMLRTRHHSAEWLAQFRRHVLTIPEVVDFHRIGGDYDYQLKVVTRDMATY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
DKVYQRLIAGVELDSVTSYFAMEAIAEGRPLPV
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]