| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is prs [H]
Identifier: 99081915
GI number: 99081915
Start: 2178130
End: 2179152
Strand: Direct
Name: prs [H]
Synonym: TM1040_2075
Alternate gene names: 99081915
Gene position: 2178130-2179152 (Clockwise)
Preceding gene: 99081912
Following gene: 99081916
Centisome position: 68.05
GC content: 60.22
Gene sequence:
>1023_bases ATGCCGACCTTGAACGAACCCAAGTTGATCTCTGGGAACGCCAATCTTCCGCTCGCTAAATCGATCTCGCGCCGCATGAG CATGCACCGTGGTGTCGACCAAGACCTCGTGAACGCCCGTGTCGAGCGTTTCAACGATGGCGAGATCTTTGTCGAAGTCT ACGAGAACGTGCGCGGCGAGGATATGTTTATCATCCAGCCGACCTCGAACCCGGCCAATGATAATCTGATGGAGCTGTTG ATCATCGCCGATGCGCTGCGCCGTTCCTCGGCCCAGCGGATCACCGCAGTGATCCCTTACTTCGGCTACGCCCGTCAGGA CCGCCGCACCAAGGCGCGCACACCGATTTCAGCCAAGATGGTCGCCAATATGCTGACCGGCGCGGGCATCGAGCGGGTTC TGACCATGGATCTGCACGCCGCTCAGATCCAGGGTTTCTTCGATATTCCGGTGGACAACCTCTATGCCAGCCCGATCTTT GCGCTGGACGTGAAGGCGCAGTTCAAGGACCAGATGGACGACCTGATGGTGGTTTCGCCCGATGTGGGTGGCGTGGCGCG TGCCCGCGAGCTCGCGAAACGCATCAACGCCCCCCTGTCGATCGTCGACAAGCGCCGCGAAAAGGCGGGCGAGATTGCCG AGATGACCGTCATCGGTGACGTCAAAGACAAGATCTGCCTGATCGTCGATGACATCTGCGACACCGCCGGCACCCTCTGC AAGGCCGCGCAGATCCTGCTCGACAATGGCGCCAAGGAAGTCCACGCCTACATCAGCCACGGCGTGATGTCCGGCCCCGC CGTGGAACGTGTGACCAATTCGGTGATGAAATCGCTGGTGCTGACGGACTCGATCCAGCCCACTCAGCCGATCCTCGACG CGCCCAATATCCGCATCGTGCCCACCGCGCCGCTCTTTACGCAGGCGATCCTCAACATCTGGCACGGCACCTCGGTGTCC TCGCTGTTTGAGGATAAGACCCTGATCCCGATCTACGAGTCGCTCTACAACAGCCAGAGCTAA
Upstream 100 bases:
>100_bases AGAATTCCTCGTGCTTAGAACTAGGCCTGACCCTATGTGCGTGTTAAGCGGGGTTCAATATCACGAATCTGTCACATTGC TGCCTGGGGAAAAACAGCCA
Downstream 100 bases:
>100_bases GATCGCTCGGATTTCACCAAAACACCCCGCGAGATGTCGTGGGGTGTTTTTTTGTGGGCGTCGAAAAAATGCACCGCACA TGGCCACGTCTGTTCAATGG
Product: ribose-phosphate pyrophosphokinase
Products: NA
Alternate protein names: RPPK; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase [H]
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MPTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERFNDGEIFVEVYENVRGEDMFIIQPTSNPANDNLMELL IIADALRRSSAQRITAVIPYFGYARQDRRTKARTPISAKMVANMLTGAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIF ALDVKAQFKDQMDDLMVVSPDVGGVARARELAKRINAPLSIVDKRREKAGEIAEMTVIGDVKDKICLIVDDICDTAGTLC KAAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVMKSLVLTDSIQPTQPILDAPNIRIVPTAPLFTQAILNIWHGTSVS SLFEDKTLIPIYESLYNSQS
Sequences:
>Translated_340_residues MPTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERFNDGEIFVEVYENVRGEDMFIIQPTSNPANDNLMELL IIADALRRSSAQRITAVIPYFGYARQDRRTKARTPISAKMVANMLTGAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIF ALDVKAQFKDQMDDLMVVSPDVGGVARARELAKRINAPLSIVDKRREKAGEIAEMTVIGDVKDKICLIVDDICDTAGTLC KAAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVMKSLVLTDSIQPTQPILDAPNIRIVPTAPLFTQAILNIWHGTSVS SLFEDKTLIPIYESLYNSQS >Mature_339_residues PTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERFNDGEIFVEVYENVRGEDMFIIQPTSNPANDNLMELLI IADALRRSSAQRITAVIPYFGYARQDRRTKARTPISAKMVANMLTGAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIFA LDVKAQFKDQMDDLMVVSPDVGGVARARELAKRINAPLSIVDKRREKAGEIAEMTVIGDVKDKICLIVDDICDTAGTLCK AAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVMKSLVLTDSIQPTQPILDAPNIRIVPTAPLFTQAILNIWHGTSVSS LFEDKTLIPIYESLYNSQS
Specific function: Utilized by both the de novo and the salvage pathways by which endogenously formed or exogenously added pyrimidine, purine, or pyridine bases are converted to the corresponding ribonucleoside monophosphates. [C]
COG id: COG0462
COG function: function code FE; Phosphoribosylpyrophosphate synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribose-phosphate pyrophosphokinase family [H]
Homologues:
Organism=Homo sapiens, GI4506127, Length=323, Percent_Identity=42.7244582043344, Blast_Score=281, Evalue=5e-76, Organism=Homo sapiens, GI4506129, Length=315, Percent_Identity=42.8571428571429, Blast_Score=280, Evalue=2e-75, Organism=Homo sapiens, GI84875539, Length=318, Percent_Identity=42.4528301886792, Blast_Score=274, Evalue=7e-74, Organism=Homo sapiens, GI28557709, Length=323, Percent_Identity=41.1764705882353, Blast_Score=270, Evalue=2e-72, Organism=Homo sapiens, GI194018537, Length=349, Percent_Identity=33.5243553008596, Blast_Score=164, Evalue=9e-41, Organism=Homo sapiens, GI4506133, Length=351, Percent_Identity=31.9088319088319, Blast_Score=159, Evalue=3e-39, Organism=Homo sapiens, GI310128524, Length=147, Percent_Identity=31.9727891156463, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI310115209, Length=147, Percent_Identity=31.9727891156463, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI310118259, Length=147, Percent_Identity=31.9727891156463, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI310119946, Length=147, Percent_Identity=31.9727891156463, Blast_Score=85, Evalue=9e-17, Organism=Escherichia coli, GI1787458, Length=319, Percent_Identity=50.4702194357367, Blast_Score=310, Evalue=1e-85, Organism=Caenorhabditis elegans, GI17554704, Length=317, Percent_Identity=41.6403785488959, Blast_Score=267, Evalue=6e-72, Organism=Caenorhabditis elegans, GI17554702, Length=323, Percent_Identity=41.4860681114551, Blast_Score=266, Evalue=8e-72, Organism=Caenorhabditis elegans, GI25149168, Length=323, Percent_Identity=41.4860681114551, Blast_Score=266, Evalue=8e-72, Organism=Caenorhabditis elegans, GI71989924, Length=323, Percent_Identity=41.4860681114551, Blast_Score=265, Evalue=2e-71, Organism=Caenorhabditis elegans, GI17570245, Length=347, Percent_Identity=30.2593659942363, Blast_Score=169, Evalue=3e-42, Organism=Saccharomyces cerevisiae, GI6321776, Length=329, Percent_Identity=43.4650455927052, Blast_Score=275, Evalue=5e-75, Organism=Saccharomyces cerevisiae, GI6319403, Length=323, Percent_Identity=43.6532507739938, Blast_Score=263, Evalue=3e-71, Organism=Saccharomyces cerevisiae, GI6320946, Length=322, Percent_Identity=42.8571428571429, Blast_Score=255, Evalue=6e-69, Organism=Saccharomyces cerevisiae, GI6322667, Length=207, Percent_Identity=38.6473429951691, Blast_Score=146, Evalue=5e-36, Organism=Saccharomyces cerevisiae, GI6324511, Length=110, Percent_Identity=37.2727272727273, Blast_Score=84, Evalue=3e-17, Organism=Drosophila melanogaster, GI21355239, Length=325, Percent_Identity=44.6153846153846, Blast_Score=288, Evalue=5e-78, Organism=Drosophila melanogaster, GI45551540, Length=348, Percent_Identity=41.6666666666667, Blast_Score=275, Evalue=4e-74, Organism=Drosophila melanogaster, GI24651458, Length=363, Percent_Identity=30.8539944903581, Blast_Score=172, Evalue=3e-43, Organism=Drosophila melanogaster, GI24651456, Length=363, Percent_Identity=30.8539944903581, Blast_Score=172, Evalue=3e-43, Organism=Drosophila melanogaster, GI281362873, Length=363, Percent_Identity=30.8539944903581, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24651454, Length=363, Percent_Identity=30.8539944903581, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24651462, Length=200, Percent_Identity=36.5, Blast_Score=134, Evalue=8e-32, Organism=Drosophila melanogaster, GI24651464, Length=200, Percent_Identity=36.5, Blast_Score=134, Evalue=8e-32, Organism=Drosophila melanogaster, GI45552010, Length=206, Percent_Identity=36.4077669902913, Blast_Score=134, Evalue=1e-31,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000842 - InterPro: IPR005946 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.7.6.1 [H]
Molecular weight: Translated: 37435; Mature: 37303
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00114 PRPP_SYNTHETASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERFNDGEIFVEVYENVRGE CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHEEHHCCCCC DMFIIQPTSNPANDNLMELLIIADALRRSSAQRITAVIPYFGYARQDRRTKARTPISAKM EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH VANMLTGAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIFALDVKAQFKDQMDDLMVVSP HHHHHHCCCHHHHHHHHHHHHHHCCEEECCHHHHHCCCEEEEECHHHHHHCCCCEEEECC DVGGVARARELAKRINAPLSIVDKRREKAGEIAEMTVIGDVKDKICLIVDDICDTAGTLC CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHH KAAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVMKSLVLTDSIQPTQPILDAPNIRIV HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE PTAPLFTQAILNIWHGTSVSSLFEDKTLIPIYESLYNSQS ECCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCC >Mature Secondary Structure PTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERFNDGEIFVEVYENVRGE CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHEEHHCCCCC DMFIIQPTSNPANDNLMELLIIADALRRSSAQRITAVIPYFGYARQDRRTKARTPISAKM EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH VANMLTGAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIFALDVKAQFKDQMDDLMVVSP HHHHHHCCCHHHHHHHHHHHHHHCCEEECCHHHHHCCCEEEEECHHHHHHCCCCEEEECC DVGGVARARELAKRINAPLSIVDKRREKAGEIAEMTVIGDVKDKICLIVDDICDTAGTLC CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHH KAAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVMKSLVLTDSIQPTQPILDAPNIRIV HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE PTAPLFTQAILNIWHGTSVSSLFEDKTLIPIYESLYNSQS ECCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA