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The map label for this gene is ykgD [C]

Identifier: 99081875

GI number: 99081875

Start: 2143723

End: 2144454

Strand: Reverse

Name: ykgD [C]

Synonym: TM1040_2035

Alternate gene names: 99081875

Gene position: 2144454-2143723 (Counterclockwise)

Preceding gene: 99081878

Following gene: 99081872

Centisome position: 66.99

GC content: 67.08

Gene sequence:

>732_bases
ATGGACCGTCTCACGACCCTGATTGACCGCTTTCGGATGCGGGTGGTTCTGGCCGCGCGCGGGGCGGGCAACCTTTGTGT
GATGCAGCCGGAGGCAGGGCGTCAGATCCTTGTGTTCACCCCCGAAGGGTGGGTTGAGGACACCGGGGCAGAGGGGGTCG
GTCTGGCGCTGCGTGTGGATTGGGACGGGGCGCATAATCCGCTTGTGGCGGCGCTGCCGCAGCGGGTGGAGGTGGATCTT
GCCGAGGCCCCGGCCCTTGCGTCCGTGCTGGCCTTGTTGCGTCAGGAACGGGAGGCGCACCGCTGTGGGGCGCAGTCTGT
GGTTTCGAGCCTCGGTCAGGTCCTGATGGTGCGCCTCCTGCGCCATTTGATCGAGGCCGGCACGGCAGCGCCCGGTCTCC
TTGCGGGTCTCGCCGACCCTCGATTGGCCCGCGCGATTGTGGCGATGCATGATGCGCCGGGGCGGAGCTGGACCACCTCG
GATCTTGCGCAGGAGGCAGGACTGTCGCTTTCGCGCTTTTCCGAGCTGTTCTCGGCGCAGATGAACGAGACCCCCATGGG
GTATCTCAGGCGTTGGCGGCTGACGCTGGCGCGTCAGGATCTCATCCGAGGCGACCGGGTTGAGGCCGTCGCGCGCCGCT
ATGCCTACGACTCGCCAGAAGGGTTTGCACGGGCCTTTCGCAAATTCTACGGCGTGGCCCCCGTTTCATTGCGGCAGAGC
ACCGCGGCCTGA

Upstream 100 bases:

>100_bases
GGGTATCGCACGACTCTGGGCTTGATAATTCCGAAAAAGCTGACCAATATTCCGAAGTCTACACGCAGTGAAACACGCTG
TGAGATATTCGGAGCAGCGC

Downstream 100 bases:

>100_bases
GGCAGAGCACCGCGGCCCGAGGCGGAGCGCGTTTGGCCTGCGATCGGGTCCGATCCGGGTGTGGGCTTCGCCATGAGACG
AGGGCTGTGAGACATGACAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGWVEDTGAEGVGLALRVDWDGAHNPLVAALPQRVEVDL
AEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMVRLLRHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTS
DLAQEAGLSLSRFSELFSAQMNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDSPEGFARAFRKFYGVAPVSLRQS
TAA

Sequences:

>Translated_243_residues
MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGWVEDTGAEGVGLALRVDWDGAHNPLVAALPQRVEVDL
AEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMVRLLRHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTS
DLAQEAGLSLSRFSELFSAQMNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDSPEGFARAFRKFYGVAPVSLRQS
TAA
>Mature_243_residues
MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGWVEDTGAEGVGLALRVDWDGAHNPLVAALPQRVEVDL
AEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMVRLLRHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTS
DLAQEAGLSLSRFSELFSAQMNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDSPEGFARAFRKFYGVAPVSLRQS
TAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=155, Percent_Identity=28.3870967741935, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26528; Mature: 26528

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGWVEDTGAEGVGLALRVD
CCHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE
WDGAHNPLVAALPQRVEVDLAEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMVRLL
CCCCCCCHHHHCCCHHEECHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTSDLAQEAGLSLSRFSELFSAQ
HHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
MNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDSPEGFARAFRKFYGVAPVSLRQS
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHC
TAA
CCC
>Mature Secondary Structure
MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGWVEDTGAEGVGLALRVD
CCHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE
WDGAHNPLVAALPQRVEVDLAEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMVRLL
CCCCCCCHHHHCCCHHEECHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTSDLAQEAGLSLSRFSELFSAQ
HHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
MNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDSPEGFARAFRKFYGVAPVSLRQS
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHC
TAA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]