Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is fda [H]

Identifier: 99081816

GI number: 99081816

Start: 2080346

End: 2081248

Strand: Direct

Name: fda [H]

Synonym: TM1040_1976

Alternate gene names: 99081816

Gene position: 2080346-2081248 (Clockwise)

Preceding gene: 99081815

Following gene: 99081818

Centisome position: 64.99

GC content: 60.24

Gene sequence:

>903_bases
ATGGCGACAGACCCCGCAATCCAACAGCAACAGTTTGACCGCATTGCAACCGGCAAGGGCTTTATTGCCGCTCTGGACCA
GTCCGGTGGCTCCACCCCCAAAGCGCTCGCGCTTTATGGCGTGATGGAAGACGCCTATTCCAACGACGACGAAATGTTTG
CCGAGATCCAGAAGATGCGCGCCCGCATCATCACCGCACCGGATTTCAACAGCGACAAGATCCTCGGCGCGATCCTGTTT
GAAAAGACCATGGACAATGCCATCGACGGCACAGCTGTTCCTGTCTACCTGTGGGAAAAATGCGGCGTTGTGCCCTTCCT
CAAGGTCGACAAGGGCCTGGCGGATGAAGCGAACGGCGTCCAGCTGATGAAACCCATGCCAGAGCTCGACGCGCTGCTGT
CGCGCGCGGTTGCAGCCGGTATCTTCGGCACCAAGATGCGCTCGGTCATCAAGGAAGCCAACGCAGACGGCATCAAAGCC
GTGGTTGCACAGCAGTTCGAGGTCGGCCTGCAGATCGCACGCGCGGGTCTGGTTCCGATCATCGAGCCCGAAGTGGACAT
CAATTCCGCCACCAAAGACGAGGCCGAAGCCTTGCTGAAAGGCGAGATCGCCGCACAGCTCGACGCGCTCCCGGAAGGCA
CCCAAGTCGCCCTCAAGCTGACCATCCCGAGCGAAGCCGGCCTCTATGACAGCCTTGCCGATCACCCCGCCGTGGTGCGT
GTGGTGGCACTCTCGGGCGGTTACAGCACCGATGACGCCTGCGCGCGCCTGTCCCAGAACAGCAAGATGATCGCGTCCTT
CTCGCGTGCGCTCACCGAAGGGCTCAACGTCGCGATGTCGGATGACGAGTATAACGCCGCTCTCGGCTCCAATATCGACA
AGATCTATAACGCCTCGCTCTAA

Upstream 100 bases:

>100_bases
TTAGCGCAACCATTGCAAAGCATTTGTTGTCTCTGTCTTGGGCCACGGTATAGAAGTGGCAACAACATTATCCGTGCATT
TCCCAAGGAGGCCGCGCGTC

Downstream 100 bases:

>100_bases
GCGCCGAGCCTGAAAGAAGCGCAAAGGCCGCAGTTTTTGCTGCGGCCTTTTCTGTTTCATATCTAACTGGGACTAGCTTG
CGGCACGCAGCGCGATCTCC

Product: fructose-1,6-bisphosphate aldolase

Products: NA

Alternate protein names: Fructose-biphosphate aldolase class I; FBP aldolase [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMEDAYSNDDEMFAEIQKMRARIITAPDFNSDKILGAILF
EKTMDNAIDGTAVPVYLWEKCGVVPFLKVDKGLADEANGVQLMKPMPELDALLSRAVAAGIFGTKMRSVIKEANADGIKA
VVAQQFEVGLQIARAGLVPIIEPEVDINSATKDEAEALLKGEIAAQLDALPEGTQVALKLTIPSEAGLYDSLADHPAVVR
VVALSGGYSTDDACARLSQNSKMIASFSRALTEGLNVAMSDDEYNAALGSNIDKIYNASL

Sequences:

>Translated_300_residues
MATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMEDAYSNDDEMFAEIQKMRARIITAPDFNSDKILGAILF
EKTMDNAIDGTAVPVYLWEKCGVVPFLKVDKGLADEANGVQLMKPMPELDALLSRAVAAGIFGTKMRSVIKEANADGIKA
VVAQQFEVGLQIARAGLVPIIEPEVDINSATKDEAEALLKGEIAAQLDALPEGTQVALKLTIPSEAGLYDSLADHPAVVR
VVALSGGYSTDDACARLSQNSKMIASFSRALTEGLNVAMSDDEYNAALGSNIDKIYNASL
>Mature_299_residues
ATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMEDAYSNDDEMFAEIQKMRARIITAPDFNSDKILGAILFE
KTMDNAIDGTAVPVYLWEKCGVVPFLKVDKGLADEANGVQLMKPMPELDALLSRAVAAGIFGTKMRSVIKEANADGIKAV
VAQQFEVGLQIARAGLVPIIEPEVDINSATKDEAEALLKGEIAAQLDALPEGTQVALKLTIPSEAGLYDSLADHPAVVRV
VALSGGYSTDDACARLSQNSKMIASFSRALTEGLNVAMSDDEYNAALGSNIDKIYNASL

Specific function: Unknown

COG id: COG3588

COG function: function code G; Fructose-1,6-bisphosphate aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class I fructose-bisphosphate aldolase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000741
- InterPro:   IPR013785
- InterPro:   IPR023014 [H]

Pfam domain/function: PF00274 Glycolytic [H]

EC number: =4.1.2.13 [H]

Molecular weight: Translated: 31846; Mature: 31714

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMEDAYSNDDEMFAEIQKMR
CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
ARIITAPDFNSDKILGAILFEKTMDNAIDGTAVPVYLWEKCGVVPFLKVDKGLADEANGV
HHEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEHEEEHHHCCCCEEEECCCCCCCCCCCE
QLMKPMPELDALLSRAVAAGIFGTKMRSVIKEANADGIKAVVAQQFEVGLQIARAGLVPI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEE
IEPEVDINSATKDEAEALLKGEIAAQLDALPEGTQVALKLTIPSEAGLYDSLADHPAVVR
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHCCCCEEEE
VVALSGGYSTDDACARLSQNSKMIASFSRALTEGLNVAMSDDEYNAALGSNIDKIYNASL
EEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCHHHHHCCCHHHHHCCCC
>Mature Secondary Structure 
ATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMEDAYSNDDEMFAEIQKMR
CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
ARIITAPDFNSDKILGAILFEKTMDNAIDGTAVPVYLWEKCGVVPFLKVDKGLADEANGV
HHEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEHEEEHHHCCCCEEEECCCCCCCCCCCE
QLMKPMPELDALLSRAVAAGIFGTKMRSVIKEANADGIKAVVAQQFEVGLQIARAGLVPI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEE
IEPEVDINSATKDEAEALLKGEIAAQLDALPEGTQVALKLTIPSEAGLYDSLADHPAVVR
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHCCCCEEEE
VVALSGGYSTDDACARLSQNSKMIASFSRALTEGLNVAMSDDEYNAALGSNIDKIYNASL
EEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]