| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081790
Identifier: 99081790
GI number: 99081790
Start: 2053273
End: 2053719
Strand: Direct
Name: 99081790
Synonym: TM1040_1950
Alternate gene names: NA
Gene position: 2053273-2053719 (Clockwise)
Preceding gene: 99081787
Following gene: 99081791
Centisome position: 64.15
GC content: 66.67
Gene sequence:
>447_bases ATGACCCCAGCCCCGTTTGAACGGGTGGGCCGACCCGCGCCCCCCGGCGCGCCGCCCGGCACCTGCTGGGAGCCGGTGAT CATTCCCGCCCGCATCGAGACGATCACCGAACAGGTGATGGTTTCCCCGGCAGAAGCGGGCACCGATGGCAATGCCGGCA AACCGGCGGTTTTTGCCACCGAAACCCGCCAGGTCATCACCCGCCCGCGCGAAGAAACCTATTTTCAAACCCCCTGCCCC GAGGAATTGACGCCGGAATATATCTCCTCGCTGCAGCGGGCGCTGGCGGCGCGCGGGCTCTATGTGGGAGACATCACCGG CAGGCTCGACGTCGATACCCGCGCGGCCGTGCGCGCGTATCAGCAGTCACTGGACATCCAGAGCGACACGCTTTCGCTGC AGGCCGCGCGCAGCCTGGGGCTGAGCGCCGTCGCATTGGATGATTAA
Upstream 100 bases:
>100_bases TGCGTCCCGCTCGGCCTTCTCCCCCATCGGCTCGCCGCTGCCTTCTGCGCTTCGACGACACGCATTGCTGTGGGTTGCTG CGGCACTGCTTGCGGGTTGC
Downstream 100 bases:
>100_bases AACGCACGCAGGCCCACCGCCACCGTCAGCGCAAACATTCAAGATCCCACCTGCCAGCTTGCGCGGGCGCGATTAGCCGC TTACAACCCCGGGGCCAGTA
Product: peptidoglycan binding domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MTPAPFERVGRPAPPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFATETRQVITRPREETYFQTPCP EELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAYQQSLDIQSDTLSLQAARSLGLSAVALDD
Sequences:
>Translated_148_residues MTPAPFERVGRPAPPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFATETRQVITRPREETYFQTPCP EELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAYQQSLDIQSDTLSLQAARSLGLSAVALDD >Mature_147_residues TPAPFERVGRPAPPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFATETRQVITRPREETYFQTPCPE ELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAYQQSLDIQSDTLSLQAARSLGLSAVALDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15881; Mature: 15750
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAPFERVGRPAPPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFAT CCCCCHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEH ETRQVITRPREETYFQTPCPEELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAY HHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHH QQSLDIQSDTLSLQAARSLGLSAVALDD HHHCCCCCHHHHHHHHHHCCCEEEEECC >Mature Secondary Structure TPAPFERVGRPAPPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFAT CCCCHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEH ETRQVITRPREETYFQTPCPEELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAY HHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHH QQSLDIQSDTLSLQAARSLGLSAVALDD HHHCCCCCHHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA