| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081784
Identifier: 99081784
GI number: 99081784
Start: 2047082
End: 2047735
Strand: Reverse
Name: 99081784
Synonym: TM1040_1943
Alternate gene names: NA
Gene position: 2047735-2047082 (Counterclockwise)
Preceding gene: 99081786
Following gene: 99081783
Centisome position: 63.97
GC content: 61.01
Gene sequence:
>654_bases ATGATAAACGAATCCGCCATGATGCTTGAAACCGTCACGCTGCTGCTGGCTGGCGGTTTTGCGCTTGGCTATCTGTGGCA GGTTCACGCAGACGAAAGCTGGTCGCGCTCTGGTTTCAAGACGGCGTCGGTTCTGAGCCTTGCTCTTGTGGCGGGCCTTT CGACGCCTCTGCTTGCGGTGGCACTGGGGCTTTGTGCCTTTGGCGATCTGGCCTTGTCGCGACCGGGGGAACGTGCCTTT CTCGCGGGTGTTGGCAGTTTTGCAGGGGGTCATCTGGCCTATGTGGGGCTGTTCCTCTCGCTGCCTGATGCGGATGTAAC GCGGCTCTGGACTGCGCCAGCGGGCTGGGCGGTGATTGCGCTCGCGGGTGTTGCCTTGGCCATGATGTCGCTCTTGGCGC GTTTCGCGGGCGAGATGCGCGTTCAGGTCATGGCCTATGTGCCCGTGATTGTCGCCATGGGGCTGGCAGCATTGACCCTG CCCACGCCGCTCATTTGGTGCGCGGCGGTCATGTTCATGATCTCGGATATGGTGCTCGCGGTTGAGACCTTTGTTCTGCC TCCGGCGCATCCTGCGCGCCGTCTGACAGCCCCCGTGATCTGGCTTCTTTACTGGGGCGCGCAGGCATTGTTTTTTGCAG TGCTTATCTTGTGA
Upstream 100 bases:
>100_bases CCGCTTTTCAGCTTGGGTAGCCCAAGGGTGGCGCAAGGTCAGCTTTGACCTTTGTGTCCCCGTCGACGCACCCTCGCGAC ATGCTTTTGGGGACCCCGCG
Downstream 100 bases:
>100_bases AAGACCTCATTGCGCTTTGCATCCTGTGTCAAAGCACATTAGGTGAAGGTCAAACGACCCTGCGGAGACCCAGATGGCGC TTTTCTCAAAGCTCAAGGAG
Product: YhhN-like
Products: NA
Alternate protein names: YhhN-Like
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASVLSLALVAGLSTPLLAVALGLCAFGDLALSRPGERAF LAGVGSFAGGHLAYVGLFLSLPDADVTRLWTAPAGWAVIALAGVALAMMSLLARFAGEMRVQVMAYVPVIVAMGLAALTL PTPLIWCAAVMFMISDMVLAVETFVLPPAHPARRLTAPVIWLLYWGAQALFFAVLIL
Sequences:
>Translated_217_residues MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASVLSLALVAGLSTPLLAVALGLCAFGDLALSRPGERAF LAGVGSFAGGHLAYVGLFLSLPDADVTRLWTAPAGWAVIALAGVALAMMSLLARFAGEMRVQVMAYVPVIVAMGLAALTL PTPLIWCAAVMFMISDMVLAVETFVLPPAHPARRLTAPVIWLLYWGAQALFFAVLIL >Mature_217_residues MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASVLSLALVAGLSTPLLAVALGLCAFGDLALSRPGERAF LAGVGSFAGGHLAYVGLFLSLPDADVTRLWTAPAGWAVIALAGVALAMMSLLARFAGEMRVQVMAYVPVIVAMGLAALTL PTPLIWCAAVMFMISDMVLAVETFVLPPAHPARRLTAPVIWLLYWGAQALFFAVLIL
Specific function: Unknown
COG id: COG3714
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22907; Mature: 22907
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASVLSLALVAGLSTPLLAV CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH ALGLCAFGDLALSRPGERAFLAGVGSFAGGHLAYVGLFLSLPDADVTRLWTAPAGWAVIA HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHH LAGVALAMMSLLARFAGEMRVQVMAYVPVIVAMGLAALTLPTPLIWCAAVMFMISDMVLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH VETFVLPPAHPARRLTAPVIWLLYWGAQALFFAVLIL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASVLSLALVAGLSTPLLAV CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH ALGLCAFGDLALSRPGERAFLAGVGSFAGGHLAYVGLFLSLPDADVTRLWTAPAGWAVIA HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHH LAGVALAMMSLLARFAGEMRVQVMAYVPVIVAMGLAALTLPTPLIWCAAVMFMISDMVLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH VETFVLPPAHPARRLTAPVIWLLYWGAQALFFAVLIL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA