Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081700

Identifier: 99081700

GI number: 99081700

Start: 1960571

End: 1961605

Strand: Reverse

Name: 99081700

Synonym: TM1040_1859

Alternate gene names: NA

Gene position: 1961605-1960571 (Counterclockwise)

Preceding gene: 99081701

Following gene: 99081699

Centisome position: 61.28

GC content: 63.77

Gene sequence:

>1035_bases
ATGCGCCTCAGCACGTATAACATCGAGTGGTTCGAAGCGCTCTTTGACGCGCAGGACCAATTGCAGCTCGACAGCGCGCC
CTCGGCCCGACACGAGATCAGCCGCGGCGCGCAGGCCGAAGCGATCGCGGATGTGCTGCGCGCCATCGACGCCGATGGCA
TTGTCATCATCGAAGCCCCCAACAGCGGCAAACACCAAAGCACCGAACGTGCCCTTGTGCGCTTTGCCGAATGGGCCGGT
CTGCGCACCCGCGACGTGGTTATGGGCTTTGCCAATGACACCCGTCAGGAAATCGCGTTCCTGTTTGATTCCAATGTGCT
GACGGCCGAACATGCCCCATTGGACACAGCACGCGCGCCGCGTTTTGACGGCACGTTTGAAATGGATCTCGACGTGGACG
CCAAGGCCGATCTGGTGCGGTTCTCCAAACCCCCGATGGAACTTCTGGTGACGCCGCGCACAGGTCCGCCCTTTCACCTT
ATCGGCGCGCATCTGAAATCCAAGGCCCCGCATGGCGCGCGCACCCCGGAGGAGGCCCGCGCCATGTCCATCGCCAACCG
TCGCAAGCAACTGGCGCAGGCGGTCTGGCTGCGTGCGCGGGTGGAGGACCGTCTGGAGGCGGGCGCGCCGCTGGTGGTGA
TGGGGGACTTGAACGACGGGCCCGGCCTTGACGCCTATGAGGCGCTCTTTGGCCGCTCTTCGGTAGAGATCATCATGGGA
CAAGAACTGTTCGACCCGCACGCGCGGCATCTCCTGCGGCCCAACCAGCAAGGTCTGCCCACATCAGCCCGCTTTTATAA
CCATCTGGAAGGGCGCTATTTTCAGGCGCTTCTGGATTACATCATGATCTCGCCGCCGCTGCAGGCCTGCGCGCCGCGCT
GGCGCATCTGGCACCCGTTCGAGGATGCCGCCTGCTATGGCACGCCGAGCCTGTGCCACGCACTTCTGACGGCCTCGGAT
CACTTTCCGGTCACGCTGGATCTGGACCTCACGCAGGCCAGCCGCCCCGAGGATGGCGGGGATTTGCAGATCTGA

Upstream 100 bases:

>100_bases
CGGGGCGTGCCCCCGGAGGCGGTGCAGCTGGCCGAGAAACGCATGATCGACATCAACCGCGCCTGGGAAGAGATCAGCGG
CAAGGCACAGGCCCGCGATC

Downstream 100 bases:

>100_bases
CGCAGGTCTGGAAACTCTCACCTATGACGCTCGTGCGGGCGCGCTATACTTGGCTCATGATACAGCATCGACATATCACC
TCTCGCCTGGGCCTTGCGCT

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAG
LRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL
IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG
QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASD
HFPVTLDLDLTQASRPEDGGDLQI

Sequences:

>Translated_344_residues
MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAG
LRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL
IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG
QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASD
HFPVTLDLDLTQASRPEDGGDLQI
>Mature_344_residues
MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAG
LRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL
IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG
QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASD
HFPVTLDLDLTQASRPEDGGDLQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38252; Mature: 38252

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAP
CCCEECCHHHHHHHHCCHHHEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECC
NSGKHQSTERALVRFAEWAGLRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAP
CCCCCHHHHHHHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCC
RFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHLIGAHLKSKAPHGARTPEEAR
CCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHH
AMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEC
QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPF
CHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCC
EDAACYGTPSLCHALLTASDHFPVTLDLDLTQASRPEDGGDLQI
CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAP
CCCEECCHHHHHHHHCCHHHEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECC
NSGKHQSTERALVRFAEWAGLRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAP
CCCCCHHHHHHHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCC
RFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHLIGAHLKSKAPHGARTPEEAR
CCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHH
AMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEC
QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPF
CHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCC
EDAACYGTPSLCHALLTASDHFPVTLDLDLTQASRPEDGGDLQI
CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA