| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081700
Identifier: 99081700
GI number: 99081700
Start: 1960571
End: 1961605
Strand: Reverse
Name: 99081700
Synonym: TM1040_1859
Alternate gene names: NA
Gene position: 1961605-1960571 (Counterclockwise)
Preceding gene: 99081701
Following gene: 99081699
Centisome position: 61.28
GC content: 63.77
Gene sequence:
>1035_bases ATGCGCCTCAGCACGTATAACATCGAGTGGTTCGAAGCGCTCTTTGACGCGCAGGACCAATTGCAGCTCGACAGCGCGCC CTCGGCCCGACACGAGATCAGCCGCGGCGCGCAGGCCGAAGCGATCGCGGATGTGCTGCGCGCCATCGACGCCGATGGCA TTGTCATCATCGAAGCCCCCAACAGCGGCAAACACCAAAGCACCGAACGTGCCCTTGTGCGCTTTGCCGAATGGGCCGGT CTGCGCACCCGCGACGTGGTTATGGGCTTTGCCAATGACACCCGTCAGGAAATCGCGTTCCTGTTTGATTCCAATGTGCT GACGGCCGAACATGCCCCATTGGACACAGCACGCGCGCCGCGTTTTGACGGCACGTTTGAAATGGATCTCGACGTGGACG CCAAGGCCGATCTGGTGCGGTTCTCCAAACCCCCGATGGAACTTCTGGTGACGCCGCGCACAGGTCCGCCCTTTCACCTT ATCGGCGCGCATCTGAAATCCAAGGCCCCGCATGGCGCGCGCACCCCGGAGGAGGCCCGCGCCATGTCCATCGCCAACCG TCGCAAGCAACTGGCGCAGGCGGTCTGGCTGCGTGCGCGGGTGGAGGACCGTCTGGAGGCGGGCGCGCCGCTGGTGGTGA TGGGGGACTTGAACGACGGGCCCGGCCTTGACGCCTATGAGGCGCTCTTTGGCCGCTCTTCGGTAGAGATCATCATGGGA CAAGAACTGTTCGACCCGCACGCGCGGCATCTCCTGCGGCCCAACCAGCAAGGTCTGCCCACATCAGCCCGCTTTTATAA CCATCTGGAAGGGCGCTATTTTCAGGCGCTTCTGGATTACATCATGATCTCGCCGCCGCTGCAGGCCTGCGCGCCGCGCT GGCGCATCTGGCACCCGTTCGAGGATGCCGCCTGCTATGGCACGCCGAGCCTGTGCCACGCACTTCTGACGGCCTCGGAT CACTTTCCGGTCACGCTGGATCTGGACCTCACGCAGGCCAGCCGCCCCGAGGATGGCGGGGATTTGCAGATCTGA
Upstream 100 bases:
>100_bases CGGGGCGTGCCCCCGGAGGCGGTGCAGCTGGCCGAGAAACGCATGATCGACATCAACCGCGCCTGGGAAGAGATCAGCGG CAAGGCACAGGCCCGCGATC
Downstream 100 bases:
>100_bases CGCAGGTCTGGAAACTCTCACCTATGACGCTCGTGCGGGCGCGCTATACTTGGCTCATGATACAGCATCGACATATCACC TCTCGCCTGGGCCTTGCGCT
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAG LRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASD HFPVTLDLDLTQASRPEDGGDLQI
Sequences:
>Translated_344_residues MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAG LRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASD HFPVTLDLDLTQASRPEDGGDLQI >Mature_344_residues MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAG LRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASD HFPVTLDLDLTQASRPEDGGDLQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38252; Mature: 38252
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAP CCCEECCHHHHHHHHCCHHHEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECC NSGKHQSTERALVRFAEWAGLRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAP CCCCCHHHHHHHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCC RFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHLIGAHLKSKAPHGARTPEEAR CCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHH AMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEC QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPF CHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCC EDAACYGTPSLCHALLTASDHFPVTLDLDLTQASRPEDGGDLQI CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAP CCCEECCHHHHHHHHCCHHHEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECC NSGKHQSTERALVRFAEWAGLRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAP CCCCCHHHHHHHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCC RFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHLIGAHLKSKAPHGARTPEEAR CCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHH AMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEC QELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPF CHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCC EDAACYGTPSLCHALLTASDHFPVTLDLDLTQASRPEDGGDLQI CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA