| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081676
Identifier: 99081676
GI number: 99081676
Start: 1935253
End: 1935987
Strand: Direct
Name: 99081676
Synonym: TM1040_1835
Alternate gene names: NA
Gene position: 1935253-1935987 (Clockwise)
Preceding gene: 99081675
Following gene: 99081677
Centisome position: 60.46
GC content: 68.71
Gene sequence:
>735_bases ATGACCGCACACTCCGCGCGCCCGCGCATCGCCATCCTCACGTCCCATGGTCAGCCGTCCGCGCCACCCCCGCCCGAGAT CCATCTTGCCGCGGTGGCCGCTGCCGTGCAGGACCACCTGCCCGATTGGGAGGTGCGCTCGGCCACCCTGTCCTCCAAAG GATTTCTGGAGGCCGCCATGCGCGAGGATGGGGCGGTGATTTACCCGTTTTTCATGGCGCGCGGCTGGTTCACCGGCAAG GTGCTGCCCGGCAGGCTCAAGGGCTGGCGCTACCGCATGGCAACACCCTTCGGGCTTGACCCCGCGCTGCCGGCGCTCAC CGTGGCCGCAATCCGCAGCGCCTTGCACGCGCGCGGCTGGAAAGTGGCGGAGTCTGAGGTGCTGCTGGCCGCCCATGGGT CTGCCCGTGGCCCCAAGGCGGCTGAGGCCGCCGAGGCCTTTGCCAGCACCCTGCGCGCGCAGATGCCAGAGCTGCGCCTG ACCACCGGATTTGTCGAAGAGACGCCCTTTGTGGCCGAGGCCGCGCGCAACTGCGGCGCGCAATCCCTGTGCCTGCCGTT CTTTGCACAGACCGGCGCGCATGTGCGTGAAGACATTCCCGCGGCCCTTGCTGAGGCGGGCTTTGAAGGTGACCTGCTCC CGGTCCTCGGTGCGTTGCCGGGGGTGGCGAAACTGATGGCAGATGCGATTGAACGGGCCGCGGAAACGGAGCTCTCTTCG CCACCTGCTGCCTGA
Upstream 100 bases:
>100_bases ATTTGTGCCCCTGCCCTTTCCCGTCCTGCGGTTGCACCCTAGGTTCAGGGAACACGCGACCCCGCCCGATTTCTCAGCCA CCGGACCCCAGCAGCCAGCC
Downstream 100 bases:
>100_bases GCCCTGCCGAGCGCAATATTTGCGCAGGGCGCAGTCTTGCGAATAATTTTTGATCAAATTCTCTTGCCAGCGCCCGCTGC TCACGCCAATGTGTCTCCAG
Product: cobalamin (vitamin B12) biosynthesis CbiX protein
Products: NA
Alternate protein names: Cobalamin; Cobalamin Biosynthesis Protein CbiX; CbiX Protein
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MTAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWEVRSATLSSKGFLEAAMREDGAVIYPFFMARGWFTGK VLPGRLKGWRYRMATPFGLDPALPALTVAAIRSALHARGWKVAESEVLLAAHGSARGPKAAEAAEAFASTLRAQMPELRL TTGFVEETPFVAEAARNCGAQSLCLPFFAQTGAHVREDIPAALAEAGFEGDLLPVLGALPGVAKLMADAIERAAETELSS PPAA
Sequences:
>Translated_244_residues MTAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWEVRSATLSSKGFLEAAMREDGAVIYPFFMARGWFTGK VLPGRLKGWRYRMATPFGLDPALPALTVAAIRSALHARGWKVAESEVLLAAHGSARGPKAAEAAEAFASTLRAQMPELRL TTGFVEETPFVAEAARNCGAQSLCLPFFAQTGAHVREDIPAALAEAGFEGDLLPVLGALPGVAKLMADAIERAAETELSS PPAA >Mature_243_residues TAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWEVRSATLSSKGFLEAAMREDGAVIYPFFMARGWFTGKV LPGRLKGWRYRMATPFGLDPALPALTVAAIRSALHARGWKVAESEVLLAAHGSARGPKAAEAAEAFASTLRAQMPELRLT TGFVEETPFVAEAARNCGAQSLCLPFFAQTGAHVREDIPAALAEAGFEGDLLPVLGALPGVAKLMADAIERAAETELSSP PAA
Specific function: Unknown
COG id: COG2138
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25690; Mature: 25558
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWEVRSATLSSKGFLEAAM CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHH REDGAVIYPFFMARGWFTGKVLPGRLKGWRYRMATPFGLDPALPALTVAAIRSALHARGW HCCCCEEEHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC KVAESEVLLAAHGSARGPKAAEAAEAFASTLRAQMPELRLTTGFVEETPFVAEAARNCGA EECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHCCHHCCCHHHHHHHHCCC QSLCLPFFAQTGAHVREDIPAALAEAGFEGDLLPVLGALPGVAKLMADAIERAAETELSS HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCC PPAA CCCC >Mature Secondary Structure TAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWEVRSATLSSKGFLEAAM CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHH REDGAVIYPFFMARGWFTGKVLPGRLKGWRYRMATPFGLDPALPALTVAAIRSALHARGW HCCCCEEEHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC KVAESEVLLAAHGSARGPKAAEAAEAFASTLRAQMPELRLTTGFVEETPFVAEAARNCGA EECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHCCHHCCCHHHHHHHHCCC QSLCLPFFAQTGAHVREDIPAALAEAGFEGDLLPVLGALPGVAKLMADAIERAAETELSS HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCC PPAA CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA