| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081673
Identifier: 99081673
GI number: 99081673
Start: 1929196
End: 1930872
Strand: Direct
Name: 99081673
Synonym: TM1040_1832
Alternate gene names: NA
Gene position: 1929196-1930872 (Clockwise)
Preceding gene: 99081671
Following gene: 99081675
Centisome position: 60.27
GC content: 64.52
Gene sequence:
>1677_bases ATGTACAACACTCGGATCGCGAGGATCACCGGCAAGGTCTCCATCCCCTGCGTCCTTTTGGGGCTTTTGTGCTTTGCAGC CTCGCTGACCCCCTCCTTGATCCCGCGCGGACCAATGGCGCAGGGCATCCTTGGGGGGCTGGTGATGGCCATCGGCTATC TGATCGGTCACATCGTTGGCCTCCTGTGGCGCGCGGCCGATCTCCCCCGGTTGCCCCGGCGGGCAGAAAGAGGCCTCACA CAGGTGATCGCCATTGTGCTTGCGGGGGTCTTTCTCTGGGTGCTGGGGTCCAGCCTCAGATGGCAAAACGACATTCGCGC AAAGATGGGCATGGAAGAAGCAGACGCGCTTCAGCTTGCCACGATCCTCGTGATCGCGCTTGCGACGTTTACACTCGCCT TTGCGCTCGGGCGTCTCGTCGCCGCGCTGTTTCGCCTGATCCGGTCGTGGTTTTATCGCATCATGCCGCCTCGGCGCGCC AATGTGCTGGGGGTCGTCGCAGTGGTGCTGATCCTGTTTTTGGGCACGCGCGATGGCATTATCGACCGGCTCGTCACCGG GCTCGACGAAAGCTACGAGGCCGCTCAAGAGCTGTTCGACAAAGCCCCACCACCCCCGGCTGCGCCACACCTGACCGGCA GCGCCGCCTCGCTGGTAGACTGGGCATCCATCGGCAAGCCGGGGCGCGATTTCATCAGCTCCGGTCCAACCGCCGAGGAC ATCTCGGCCTTCACCGGCCAGCCCGCGCGCGACCCGATCCGGGTCTATGTCGGCCGCGCCAGCGCAGAGACGCCAGAGGC GCGCGCCGAACTGGCGCTGGCCGAATTGATCCGGCAGGACGCCTTTGCCCGCGACGTTCTGATCATGACAAGCCCCACCG GCACGGGCTGGATGGATCCCGGATCCCACGACCCTGTCGAATACATGCATGGTGGCAATATCGCGACGGTGGCCGTGCAG TATTCCTACCTGCAGTCGCCGCTCGCCCTGATCCTCGAGACACGCACGGGTCTTGAACAGGCCACCGCGCTGCAGGATGC CGTGCACGGATACTGGAAGACTCTCCCCGCCGACGCACGCCCCCGTCTCTATGCCCACGGGCTGAGCCTTGGGGCCTGGT CCTCCATGCATGCCACAAACATGTTCCGGCTGCTCAACGATCCGATCGACGGCGCCTTCTGGGCCGGTCCCCCCTTTCCG TCGACCTTTTGGAATTATGTCCAGAACCGGCGCAATCCGGGCACGCCCTGGGTGCTGCCGGAAATCGGCGACGGGTCGCT GGTCCGCTATGCCTCACACACGGCAGATGCGTCCGAGGCCGCGGCAGAGTGGGGCGAGATGCGCATCGTTTTCCTGCAGT ATTCCAGCGATCCCGTTGTGTTTTATGATCCGCGCTCGCTCTGGCGCGCACCGCCATGGATGCGGGATCCGCCCGCCGCA GACATGACGGAACATTTCATCTTCATGCCCGTCGTGACCCAGTTCCAGCTCGCGCTCGACATCGCGCTGTCTTTTGGTGC CCCACCCGGCCACGGGCACGCCTATTATGCGCGCGACTATATCGGACCGTGGTTGCAAGTCACCGCGCCGCGAGACTGGT CCCCCGAGGACACCGCGCGCCTGATCGCGCATTGCAATACCGGCTTCCAACAAGGCTGCGCCAACGCCCGCCGCTAG
Upstream 100 bases:
>100_bases GCCTGAAAAATGAAAGCCCTCTGCGAAAGGCTTTTGCGCCTTCGGCGTGGCTGTGACACCCTCACGCCGAGGGCAGCAAA TCGGGGTTTTGAGGCACAAC
Downstream 100 bases:
>100_bases CCTCCTTGTCGCCCCTCAGGCGCAGCCCCCCGCGCGGTCGCGTTCTGACGAAACAGCAGGTGGCGGCACTCCTGCTCTCT CGCCTCAGGTCTCGACGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 558; Mature: 558
Protein sequence:
>558_residues MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGILGGLVMAIGYLIGHIVGLLWRAADLPRLPRRAERGLT QVIAIVLAGVFLWVLGSSLRWQNDIRAKMGMEEADALQLATILVIALATFTLAFALGRLVAALFRLIRSWFYRIMPPRRA NVLGVVAVVLILFLGTRDGIIDRLVTGLDESYEAAQELFDKAPPPPAAPHLTGSAASLVDWASIGKPGRDFISSGPTAED ISAFTGQPARDPIRVYVGRASAETPEARAELALAELIRQDAFARDVLIMTSPTGTGWMDPGSHDPVEYMHGGNIATVAVQ YSYLQSPLALILETRTGLEQATALQDAVHGYWKTLPADARPRLYAHGLSLGAWSSMHATNMFRLLNDPIDGAFWAGPPFP STFWNYVQNRRNPGTPWVLPEIGDGSLVRYASHTADASEAAAEWGEMRIVFLQYSSDPVVFYDPRSLWRAPPWMRDPPAA DMTEHFIFMPVVTQFQLALDIALSFGAPPGHGHAYYARDYIGPWLQVTAPRDWSPEDTARLIAHCNTGFQQGCANARR
Sequences:
>Translated_558_residues MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGILGGLVMAIGYLIGHIVGLLWRAADLPRLPRRAERGLT QVIAIVLAGVFLWVLGSSLRWQNDIRAKMGMEEADALQLATILVIALATFTLAFALGRLVAALFRLIRSWFYRIMPPRRA NVLGVVAVVLILFLGTRDGIIDRLVTGLDESYEAAQELFDKAPPPPAAPHLTGSAASLVDWASIGKPGRDFISSGPTAED ISAFTGQPARDPIRVYVGRASAETPEARAELALAELIRQDAFARDVLIMTSPTGTGWMDPGSHDPVEYMHGGNIATVAVQ YSYLQSPLALILETRTGLEQATALQDAVHGYWKTLPADARPRLYAHGLSLGAWSSMHATNMFRLLNDPIDGAFWAGPPFP STFWNYVQNRRNPGTPWVLPEIGDGSLVRYASHTADASEAAAEWGEMRIVFLQYSSDPVVFYDPRSLWRAPPWMRDPPAA DMTEHFIFMPVVTQFQLALDIALSFGAPPGHGHAYYARDYIGPWLQVTAPRDWSPEDTARLIAHCNTGFQQGCANARR >Mature_558_residues MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGILGGLVMAIGYLIGHIVGLLWRAADLPRLPRRAERGLT QVIAIVLAGVFLWVLGSSLRWQNDIRAKMGMEEADALQLATILVIALATFTLAFALGRLVAALFRLIRSWFYRIMPPRRA NVLGVVAVVLILFLGTRDGIIDRLVTGLDESYEAAQELFDKAPPPPAAPHLTGSAASLVDWASIGKPGRDFISSGPTAED ISAFTGQPARDPIRVYVGRASAETPEARAELALAELIRQDAFARDVLIMTSPTGTGWMDPGSHDPVEYMHGGNIATVAVQ YSYLQSPLALILETRTGLEQATALQDAVHGYWKTLPADARPRLYAHGLSLGAWSSMHATNMFRLLNDPIDGAFWAGPPFP STFWNYVQNRRNPGTPWVLPEIGDGSLVRYASHTADASEAAAEWGEMRIVFLQYSSDPVVFYDPRSLWRAPPWMRDPPAA DMTEHFIFMPVVTQFQLALDIALSFGAPPGHGHAYYARDYIGPWLQVTAPRDWSPEDTARLIAHCNTGFQQGCANARR
Specific function: Unknown
COG id: COG4425
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61048; Mature: 61048
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGILGGLVMAIGYLIGHIVG CCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LLWRAADLPRLPRRAERGLTQVIAIVLAGVFLWVLGSSLRWQNDIRAKMGMEEADALQLA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHH TILVIALATFTLAFALGRLVAALFRLIRSWFYRIMPPRRANVLGVVAVVLILFLGTRDGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHH IDRLVTGLDESYEAAQELFDKAPPPPAAPHLTGSAASLVDWASIGKPGRDFISSGPTAED HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCHHH ISAFTGQPARDPIRVYVGRASAETPEARAELALAELIRQDAFARDVLIMTSPTGTGWMDP HHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC GSHDPVEYMHGGNIATVAVQYSYLQSPLALILETRTGLEQATALQDAVHGYWKTLPADAR CCCCCHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC PRLYAHGLSLGAWSSMHATNMFRLLNDPIDGAFWAGPPFPSTFWNYVQNRRNPGTPWVLP CCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECC EIGDGSLVRYASHTADASEAAAEWGEMRIVFLQYSSDPVVFYDPRSLWRAPPWMRDPPAA CCCCCCEEEHHHHCCCHHHHHHHCCCEEEEEEEECCCCEEEECCHHHHCCCCCCCCCCCC DMTEHFIFMPVVTQFQLALDIALSFGAPPGHGHAYYARDYIGPWLQVTAPRDWSPEDTAR CHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHCCCCEEEECCCCCCCHHHHH LIAHCNTGFQQGCANARR HHHHHCCCHHHHHCCCCC >Mature Secondary Structure MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGILGGLVMAIGYLIGHIVG CCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LLWRAADLPRLPRRAERGLTQVIAIVLAGVFLWVLGSSLRWQNDIRAKMGMEEADALQLA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHH TILVIALATFTLAFALGRLVAALFRLIRSWFYRIMPPRRANVLGVVAVVLILFLGTRDGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHH IDRLVTGLDESYEAAQELFDKAPPPPAAPHLTGSAASLVDWASIGKPGRDFISSGPTAED HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCHHH ISAFTGQPARDPIRVYVGRASAETPEARAELALAELIRQDAFARDVLIMTSPTGTGWMDP HHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC GSHDPVEYMHGGNIATVAVQYSYLQSPLALILETRTGLEQATALQDAVHGYWKTLPADAR CCCCCHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC PRLYAHGLSLGAWSSMHATNMFRLLNDPIDGAFWAGPPFPSTFWNYVQNRRNPGTPWVLP CCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECC EIGDGSLVRYASHTADASEAAAEWGEMRIVFLQYSSDPVVFYDPRSLWRAPPWMRDPPAA CCCCCCEEEHHHHCCCHHHHHHHCCCEEEEEEEECCCCEEEECCHHHHCCCCCCCCCCCC DMTEHFIFMPVVTQFQLALDIALSFGAPPGHGHAYYARDYIGPWLQVTAPRDWSPEDTAR CHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHCCCCEEEECCCCCCCHHHHH LIAHCNTGFQQGCANARR HHHHHCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA