Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081665

Identifier: 99081665

GI number: 99081665

Start: 1919245

End: 1920081

Strand: Direct

Name: 99081665

Synonym: TM1040_1824

Alternate gene names: NA

Gene position: 1919245-1920081 (Clockwise)

Preceding gene: 99081664

Following gene: 99081666

Centisome position: 59.96

GC content: 61.05

Gene sequence:

>837_bases
ATGGACCGCAAACTCCTGCTCATCATCCTTGATGGCGTGCCCCATCGCAATTTTCGCCGCCTGTTTGGCAACCTCGAGGG
CTGGGTCGCCTCTGGTGATGCCCGCGTCTGGAAGCACCGCGCGGTGCTGCCCTCGATCTCCGCAAGCTGCTATGCCTCAA
TCCACACGGGCGTCACCCCGCAGGAGCATGGCTGCACCGGCAATGGCAATGTCTTCCGCCTGAGCCACGACGATGTGTTT
TCCCAAGTGCGCAAGGCCGGCGGCACCACCGGGGCGGTCGCGCATAGTTTCTGGTCGGAGTTCTTCAATCGCTCCCCCTT
CGATTATGTGCGCGACATCGAATATGACGAGCCCGAAAGCAAGACCATCAACCATGGGCGCTTTCACTCGATGACGGGCT
ATGGCCACGACAACCAGATGACGCCCTCGGATGTGGATCTCTTTGCCACGCTCACCAACCTCTGCGGGCGCTTTGATCTC
GACTACGGCATGTTGCACACCTGCACGCTCGACAGCATGGGGCATCGCTTCTTTCACGAAAGTGCCGAGATGGACAAAGC
CTGCTTTGTGATGGACGAGATGCTGGCGCCGTTCATCCCGCGCTGGCGTGCCATGGGCTATGAGGTGATCGTGACCGCCG
ACCATGGTCAGGACGAGCGTGGCCACCACGGCGGGCGCCACCCGCTGCAACAGGAAACCGCGCTGTATTACTTTGGCGAT
GCGGATGGCCCGGCAGAGAATGACGTGATCGACCAGTTGCAACTGGCCCCCACAATCCTGAGCCGCCTTGGCGCGCCCCT
TGCAGAGACCATGAAAGCCGAGGCATTCTTGCGCTGA

Upstream 100 bases:

>100_bases
GCGCCCGACCCTCCCCCCAGGGAGGGCGCTTCACGCCCACCCTAGGCTCGGGCGCTGACCTGAGCGCCCATAAATCCACC
CCCAGCCCAGGACCTCCCCC

Downstream 100 bases:

>100_bases
GGTCATTCATTCCGGCCTCGGATCCAATTTTGACGAGGCTGTTATGAAATATTTCCTTGCTCTGCTGGCAATGGCCGCTG
CCACGCCGGCCCTTGCCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVF
SQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDL
DYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD
ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR

Sequences:

>Translated_278_residues
MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVF
SQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDL
DYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD
ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR
>Mature_278_residues
MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVF
SQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDL
DYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD
ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR

Specific function: Unknown

COG id: COG1524

COG function: function code R; Uncharacterized proteins of the AP superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31237; Mature: 31237

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTP
CCCEEEEEEECCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCCCCC
QEHGCTGNGNVFRLSHDDVFSQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPES
CCCCCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
KTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDLDYGMLHTCTLDSMGHRFFHE
CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHH
SAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC
ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTP
CCCEEEEEEECCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCCCCC
QEHGCTGNGNVFRLSHDDVFSQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPES
CCCCCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
KTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDLDYGMLHTCTLDSMGHRFFHE
CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHH
SAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC
ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA