| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081665
Identifier: 99081665
GI number: 99081665
Start: 1919245
End: 1920081
Strand: Direct
Name: 99081665
Synonym: TM1040_1824
Alternate gene names: NA
Gene position: 1919245-1920081 (Clockwise)
Preceding gene: 99081664
Following gene: 99081666
Centisome position: 59.96
GC content: 61.05
Gene sequence:
>837_bases ATGGACCGCAAACTCCTGCTCATCATCCTTGATGGCGTGCCCCATCGCAATTTTCGCCGCCTGTTTGGCAACCTCGAGGG CTGGGTCGCCTCTGGTGATGCCCGCGTCTGGAAGCACCGCGCGGTGCTGCCCTCGATCTCCGCAAGCTGCTATGCCTCAA TCCACACGGGCGTCACCCCGCAGGAGCATGGCTGCACCGGCAATGGCAATGTCTTCCGCCTGAGCCACGACGATGTGTTT TCCCAAGTGCGCAAGGCCGGCGGCACCACCGGGGCGGTCGCGCATAGTTTCTGGTCGGAGTTCTTCAATCGCTCCCCCTT CGATTATGTGCGCGACATCGAATATGACGAGCCCGAAAGCAAGACCATCAACCATGGGCGCTTTCACTCGATGACGGGCT ATGGCCACGACAACCAGATGACGCCCTCGGATGTGGATCTCTTTGCCACGCTCACCAACCTCTGCGGGCGCTTTGATCTC GACTACGGCATGTTGCACACCTGCACGCTCGACAGCATGGGGCATCGCTTCTTTCACGAAAGTGCCGAGATGGACAAAGC CTGCTTTGTGATGGACGAGATGCTGGCGCCGTTCATCCCGCGCTGGCGTGCCATGGGCTATGAGGTGATCGTGACCGCCG ACCATGGTCAGGACGAGCGTGGCCACCACGGCGGGCGCCACCCGCTGCAACAGGAAACCGCGCTGTATTACTTTGGCGAT GCGGATGGCCCGGCAGAGAATGACGTGATCGACCAGTTGCAACTGGCCCCCACAATCCTGAGCCGCCTTGGCGCGCCCCT TGCAGAGACCATGAAAGCCGAGGCATTCTTGCGCTGA
Upstream 100 bases:
>100_bases GCGCCCGACCCTCCCCCCAGGGAGGGCGCTTCACGCCCACCCTAGGCTCGGGCGCTGACCTGAGCGCCCATAAATCCACC CCCAGCCCAGGACCTCCCCC
Downstream 100 bases:
>100_bases GGTCATTCATTCCGGCCTCGGATCCAATTTTGACGAGGCTGTTATGAAATATTTCCTTGCTCTGCTGGCAATGGCCGCTG CCACGCCGGCCCTTGCCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVF SQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDL DYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR
Sequences:
>Translated_278_residues MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVF SQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDL DYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR >Mature_278_residues MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVF SQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDL DYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR
Specific function: Unknown
COG id: COG1524
COG function: function code R; Uncharacterized proteins of the AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31237; Mature: 31237
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTP CCCEEEEEEECCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCCCCC QEHGCTGNGNVFRLSHDDVFSQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPES CCCCCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC KTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDLDYGMLHTCTLDSMGHRFFHE CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHH SAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTP CCCEEEEEEECCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCCCCC QEHGCTGNGNVFRLSHDDVFSQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPES CCCCCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC KTINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDLDYGMLHTCTLDSMGHRFFHE CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHH SAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYYFGD HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC ADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA