| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yhaZ [H]
Identifier: 99081643
GI number: 99081643
Start: 1893699
End: 1894817
Strand: Reverse
Name: yhaZ [H]
Synonym: TM1040_1802
Alternate gene names: 99081643
Gene position: 1894817-1893699 (Counterclockwise)
Preceding gene: 99081644
Following gene: 99081642
Centisome position: 59.2
GC content: 61.13
Gene sequence:
>1119_bases ATGGCCGAGTCGTTTTCGCTGAAGGATCAGCTTTTTAACGTGGAAAAGACCCGCTATCTGGCGGGGCTTTTTGACGCGGC TTCGGTGGAGTTTGACCCGCGCGCCTTTGAGGCGGATGTGATGGCGCGGCTCCTTGATCTTGAGCTCAAGGCGCGCATCA ACTGGATCGCCGAGATGCTGTCAAAGCATGTCCCGGGTCCGCTCGATCAAGTTGCACCGGTGATTTTTGCGGCTCTGCCG CCACCTTTGGACCCAAGCCTGCGCGATGATGACTTTGGCGATTTCATCTTTGCTCCGCTTGGGGAATGGGTTGCGGATCT CACCAAGACCGAGGCCGATCTGCCTCTGGCGCTGGATCTACTGGAGGCCGTAACACAGCGTTTTTCCATGGAGTTTGCGA TCCGCCCGCTGTTGAAAACCTGGCCCGATCCTGTGCTTGCGCGCATGTCGCGTTGGGCCGGGCACGCGCATTATCATGTG CGAAGGCTTGCCAGTGAGGGCACGCGCCCGCGGCTGCCCTGGGGCCTTGCGGTAAATCTGCCGTTGGATGCGCCCTTGCC GATCCTAGACCGTCTTCACGGCGATGACACACGTTTTGTCACACGTTCGGTGGCCAATCACTTGAATGACATCGCCAAAA AAGACCCGCAGATCGTGGTGGACCAACTGACCGCGTGGCAAGCGCGCGGCGAGCAGGCCCAAAAAGAGCTGGACTGGATG ACCTCCCATGCGCTGCGTGGCCTGATCAAGGCGGGCGATCCCCGCGCGCTGCGACTGCTTGGGTATGATCCGGAACTTGA TCTCTCGGCAGAGCTTGAACTGCCCGGACGCGTGCGGATCGGTGAAAAACTGATGTTGGGCGCGCGGCTGCAGGGGGGCA GGGGCGCGCGGGTGCTGGTGGATTATGCCCTGACCTTTCAACGGGCTGGTGGCAAGACCTCAACCAAGGTGTTCAAGTGG AAGACCGGCACGCTGGGCGCTGACGGCCTGAGCTTGCAAAAGACGCATCCGCTTAAGGCGCAGGCCTCGACCTTTACGCT GTTGCCGGGGGCGCATCGGGTGACGCTGATGGTCAATGGCCAGCCCCGGGCAAGCGGCGAGGTGGAGTTCCTTGCCTGA
Upstream 100 bases:
>100_bases GGGGCGACCTGCGCGTTCCTCTGCTCGCAGCATGCGGGTTTCATCATTGGCCAGAATATCCTGCTGGATGGCGGTGCCAC CAATATGACGCTCTGACCTG
Downstream 100 bases:
>100_bases GGCAAGCCGCCTTGGTATCAGCGCGCAACCTCCCACTGAGAGCGTTCCAAAGACAAAGGGCCAGACCATGCCAGAGCAGA GGACCAAATCCGCGCTGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALP PPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHV RRLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKW KTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA
Sequences:
>Translated_372_residues MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALP PPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHV RRLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKW KTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA >Mature_371_residues AESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALPP PLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHVR RLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWMT SHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKWK TGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA
Specific function: Unknown
COG id: COG4335
COG function: function code L; DNA alkylation repair enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HEAT repeat [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011989 - InterPro: IPR016024 - InterPro: IPR000357 - InterPro: IPR021133 [H]
Pfam domain/function: PF02985 HEAT [H]
EC number: NA
Molecular weight: Translated: 41222; Mature: 41091
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEML CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SKHVPGPLDQVAPVIFAALPPPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDL HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH LEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHVRRLASEGTRPRLPWGLAVNL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEC PLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLV HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCEEECCHHEECCCCCCCCCCEEEE DYALTFQRAGGKTSTKVFKWKTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNG EHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECC QPRASGEVEFLA CCCCCCCEEEEC >Mature Secondary Structure AESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEML CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SKHVPGPLDQVAPVIFAALPPPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDL HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH LEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHVRRLASEGTRPRLPWGLAVNL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEC PLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLV HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCEEECCHHEECCCCCCCCCCEEEE DYALTFQRAGGKTSTKVFKWKTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNG EHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECC QPRASGEVEFLA CCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]