Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is yhaZ [H]

Identifier: 99081643

GI number: 99081643

Start: 1893699

End: 1894817

Strand: Reverse

Name: yhaZ [H]

Synonym: TM1040_1802

Alternate gene names: 99081643

Gene position: 1894817-1893699 (Counterclockwise)

Preceding gene: 99081644

Following gene: 99081642

Centisome position: 59.2

GC content: 61.13

Gene sequence:

>1119_bases
ATGGCCGAGTCGTTTTCGCTGAAGGATCAGCTTTTTAACGTGGAAAAGACCCGCTATCTGGCGGGGCTTTTTGACGCGGC
TTCGGTGGAGTTTGACCCGCGCGCCTTTGAGGCGGATGTGATGGCGCGGCTCCTTGATCTTGAGCTCAAGGCGCGCATCA
ACTGGATCGCCGAGATGCTGTCAAAGCATGTCCCGGGTCCGCTCGATCAAGTTGCACCGGTGATTTTTGCGGCTCTGCCG
CCACCTTTGGACCCAAGCCTGCGCGATGATGACTTTGGCGATTTCATCTTTGCTCCGCTTGGGGAATGGGTTGCGGATCT
CACCAAGACCGAGGCCGATCTGCCTCTGGCGCTGGATCTACTGGAGGCCGTAACACAGCGTTTTTCCATGGAGTTTGCGA
TCCGCCCGCTGTTGAAAACCTGGCCCGATCCTGTGCTTGCGCGCATGTCGCGTTGGGCCGGGCACGCGCATTATCATGTG
CGAAGGCTTGCCAGTGAGGGCACGCGCCCGCGGCTGCCCTGGGGCCTTGCGGTAAATCTGCCGTTGGATGCGCCCTTGCC
GATCCTAGACCGTCTTCACGGCGATGACACACGTTTTGTCACACGTTCGGTGGCCAATCACTTGAATGACATCGCCAAAA
AAGACCCGCAGATCGTGGTGGACCAACTGACCGCGTGGCAAGCGCGCGGCGAGCAGGCCCAAAAAGAGCTGGACTGGATG
ACCTCCCATGCGCTGCGTGGCCTGATCAAGGCGGGCGATCCCCGCGCGCTGCGACTGCTTGGGTATGATCCGGAACTTGA
TCTCTCGGCAGAGCTTGAACTGCCCGGACGCGTGCGGATCGGTGAAAAACTGATGTTGGGCGCGCGGCTGCAGGGGGGCA
GGGGCGCGCGGGTGCTGGTGGATTATGCCCTGACCTTTCAACGGGCTGGTGGCAAGACCTCAACCAAGGTGTTCAAGTGG
AAGACCGGCACGCTGGGCGCTGACGGCCTGAGCTTGCAAAAGACGCATCCGCTTAAGGCGCAGGCCTCGACCTTTACGCT
GTTGCCGGGGGCGCATCGGGTGACGCTGATGGTCAATGGCCAGCCCCGGGCAAGCGGCGAGGTGGAGTTCCTTGCCTGA

Upstream 100 bases:

>100_bases
GGGGCGACCTGCGCGTTCCTCTGCTCGCAGCATGCGGGTTTCATCATTGGCCAGAATATCCTGCTGGATGGCGGTGCCAC
CAATATGACGCTCTGACCTG

Downstream 100 bases:

>100_bases
GGCAAGCCGCCTTGGTATCAGCGCGCAACCTCCCACTGAGAGCGTTCCAAAGACAAAGGGCCAGACCATGCCAGAGCAGA
GGACCAAATCCGCGCTGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALP
PPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHV
RRLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM
TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKW
KTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA

Sequences:

>Translated_372_residues
MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALP
PPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHV
RRLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM
TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKW
KTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA
>Mature_371_residues
AESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALPP
PLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHVR
RLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWMT
SHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKWK
TGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA

Specific function: Unknown

COG id: COG4335

COG function: function code L; DNA alkylation repair enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HEAT repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR000357
- InterPro:   IPR021133 [H]

Pfam domain/function: PF02985 HEAT [H]

EC number: NA

Molecular weight: Translated: 41222; Mature: 41091

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEML
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SKHVPGPLDQVAPVIFAALPPPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDL
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
LEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHVRRLASEGTRPRLPWGLAVNL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEC
PLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLV
HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCEEECCHHEECCCCCCCCCCEEEE
DYALTFQRAGGKTSTKVFKWKTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNG
EHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECC
QPRASGEVEFLA
CCCCCCCEEEEC
>Mature Secondary Structure 
AESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SKHVPGPLDQVAPVIFAALPPPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDL
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
LEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHVRRLASEGTRPRLPWGLAVNL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEC
PLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQIVVDQLTAWQARGEQAQKELDWM
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRIGEKLMLGARLQGGRGARVLV
HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCEEECCHHEECCCCCCCCCCEEEE
DYALTFQRAGGKTSTKVFKWKTGTLGADGLSLQKTHPLKAQASTFTLLPGAHRVTLMVNG
EHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECC
QPRASGEVEFLA
CCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]