| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is tatC [C]
Identifier: 99081636
GI number: 99081636
Start: 1888716
End: 1889606
Strand: Reverse
Name: tatC [C]
Synonym: TM1040_1795
Alternate gene names: 99081636
Gene position: 1889606-1888716 (Counterclockwise)
Preceding gene: 99081637
Following gene: 99081635
Centisome position: 59.03
GC content: 58.59
Gene sequence:
>891_bases ATGAGCCAAACAGACGATCTTGACGATTCCACAGCGCCGCTGATCGAGCATCTGGCCGAATTGCGCAGCCGCCTGATCCG GGCGGTCATGGCCTTTGCGGTGGGGATCGTGCTGGCCTTTATGGTAGCCGAACCGATCCTGCAGTTCCTCGTCGCTCCGA TCGAGCAGACCCTACGAGAATTGGGCGATCCCTCCCCGACGCTGCAGTATACCTCGCCGCAGGAGTATCTCTTTACCCTT TTCCGGATCTCGATGGTGTTTGGATTTGCGCTGTCGTTCCCGGTGATCGGCTTTCAGCTCTGGCGGTTTGTGGCGCCGGG CCTCTACAAGAGCGAGAAAGGCGCGTTTCTGCCGTTCCTGATTGCCTCGCCCTTCATGTTCCTGCTTGGCGCGTCCTTTG CGCAATTTGTGGTGACGCCACTGGCAATGCAGTTCTTCCTCGGCTTTGCTGACGTGAGCTCGATCTTTGCGGGCCTGTTG TCGCAAGCCACCGGAGGCGACGTGCCTGCGGATGTTGCCGTGGTGCCGGAGACATCCGAAGGGGTGAAGATCACCTTCTT TGGCAAAGTGAACGAGAGCCTTGATATTACGCTCAAATTCATCATGGCCTTTGGTCTGTGCTTCCAGCTGCCGGTTCTTC TCACCCTGATGGGCAAGGCCGGATTGGTGAGCGCCGAAGGGCTGGGTGGCATGCGCAAATATGCGGTTGTGGCCATTCTG GTGCTGGCCGCGTTGGTGACGCCGCCGGATGTGATCACCCAGATCATTCTCTTTACGGTGGTCTACGGGCTTTATGAGGT ATCGATCTTCCTCGTCGGGCGCGTCGAGAAAAAGCGCGAGGCGCAGCTGCGCGCCGAAGGCTACTATGACGACGAGCTGG ACGGCGAATAA
Upstream 100 bases:
>100_bases CGCGGGAAGCTGCAGAGGCCGCGGCCAAGGCCGAAGAAGCCGAAGCCGCTCTCTCGGCCACGCCCGCCAGCACGGCATCT TCTGACAGTGAGACCAAGGC
Downstream 100 bases:
>100_bases GCGCCACATGCACTGAAACCTTTGAAAAAGGCGCGCCCCCTTTGGAGCGCGCCTTTTTCTTTTGTTGTTTGGTGTTCACA GGGCGCATGGGGATTGGCGT
Product: Sec-independent protein translocase TatC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAEPILQFLVAPIEQTLRELGDPSPTLQYTSPQEYLFTL FRISMVFGFALSFPVIGFQLWRFVAPGLYKSEKGAFLPFLIASPFMFLLGASFAQFVVTPLAMQFFLGFADVSSIFAGLL SQATGGDVPADVAVVPETSEGVKITFFGKVNESLDITLKFIMAFGLCFQLPVLLTLMGKAGLVSAEGLGGMRKYAVVAIL VLAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVEKKREAQLRAEGYYDDELDGE
Sequences:
>Translated_296_residues MSQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAEPILQFLVAPIEQTLRELGDPSPTLQYTSPQEYLFTL FRISMVFGFALSFPVIGFQLWRFVAPGLYKSEKGAFLPFLIASPFMFLLGASFAQFVVTPLAMQFFLGFADVSSIFAGLL SQATGGDVPADVAVVPETSEGVKITFFGKVNESLDITLKFIMAFGLCFQLPVLLTLMGKAGLVSAEGLGGMRKYAVVAIL VLAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVEKKREAQLRAEGYYDDELDGE >Mature_295_residues SQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAEPILQFLVAPIEQTLRELGDPSPTLQYTSPQEYLFTLF RISMVFGFALSFPVIGFQLWRFVAPGLYKSEKGAFLPFLIASPFMFLLGASFAQFVVTPLAMQFFLGFADVSSIFAGLLS QATGGDVPADVAVVPETSEGVKITFFGKVNESLDITLKFIMAFGLCFQLPVLLTLMGKAGLVSAEGLGGMRKYAVVAILV LAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVEKKREAQLRAEGYYDDELDGE
Specific function: Required For Correct Localization Of Precursor Proteins Bearing Signal Peptides With The Twin Arginine Conserved Motif S/T-R-R-X-F-L-K. This Sec-Independent Pathway Is Termed Tat For Twin-Arginine Translocation System. This System Mainly Transports Protei
COG id: COG0805
COG function: function code U; Sec-independent protein secretion pathway component TatC
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tatC family [H]
Homologues:
Organism=Escherichia coli, GI2367313, Length=283, Percent_Identity=31.8021201413428, Blast_Score=129, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002033 - InterPro: IPR019820 - InterPro: IPR019822 [H]
Pfam domain/function: PF00902 TatC [H]
EC number: NA
Molecular weight: Translated: 32325; Mature: 32194
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAEPILQFLVAPIEQTLRE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGDPSPTLQYTSPQEYLFTLFRISMVFGFALSFPVIGFQLWRFVAPGLYKSEKGAFLPFL HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH IASPFMFLLGASFAQFVVTPLAMQFFLGFADVSSIFAGLLSQATGGDVPADVAVVPETSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC GVKITFFGKVNESLDITLKFIMAFGLCFQLPVLLTLMGKAGLVSAEGLGGMRKYAVVAIL CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH VLAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVEKKREAQLRAEGYYDDELDGE HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAEPILQFLVAPIEQTLRE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGDPSPTLQYTSPQEYLFTLFRISMVFGFALSFPVIGFQLWRFVAPGLYKSEKGAFLPFL HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH IASPFMFLLGASFAQFVVTPLAMQFFLGFADVSSIFAGLLSQATGGDVPADVAVVPETSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC GVKITFFGKVNESLDITLKFIMAFGLCFQLPVLLTLMGKAGLVSAEGLGGMRKYAVVAIL CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH VLAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVEKKREAQLRAEGYYDDELDGE HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]