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The map label for this gene is lppB [H]

Identifier: 99081634

GI number: 99081634

Start: 1886267

End: 1887547

Strand: Direct

Name: lppB [H]

Synonym: TM1040_1793

Alternate gene names: 99081634

Gene position: 1886267-1887547 (Clockwise)

Preceding gene: 99081633

Following gene: 99081639

Centisome position: 58.93

GC content: 67.14

Gene sequence:

>1281_bases
ATGACCCGCACGCCGAAGGTCTTCCGCACGATCCGCCCGATCCCGCTGCCTTTTCCCCGGTCCTCGTCCGCATCGAGTGG
CGCATCGCGCCTTCGACCTTCGATTGCCCTACTGCCGCTGGTGCTGCTGGCAGCCGCCTGTACCGAGCCGCTCGATTATG
ATCTGCGGGGCCAGCTTGGCGCCTTCAACACCACAAGGGCCGCGCAGACCGCCACCGAAAACCGCCCAGCGCCCGACAGC
CGGGGGCTGATCACCTACCCGTCCTATCAGGTTGCAGTCGCGCGCAATGGCGACACGGTTGCGGATCTCGCCGGGCGCGT
CGGGCTGCCCGCGGTCGAGGTCGCGCGTTTCAACGGCGTGGAGACCACCGACCCCCTGCGCAAAGGTGAGGTGCTCGTCC
TGCCCCGCCGCGCGCCCGAGGCCTCTGCGCGCAGTGGCACCGCCACGCCTGGCGGCGTGGATATCGCCTCGCTTGCAGGC
AGCGCCATTGACAGCGCCCCCTCGACCTCGCCCAATCCGGGCTCCGTGACCACCACCACGCTGCAGAACACCCCCAGCAA
ACCCGCACCCACGCGCGTGCAGGCGGGCCCAGAACCCGTGCGCCACAAGGTGACGCGTGGCGAGACCGCCTATACGATCG
CGCGGCTCTACCAGATCCCGGTCAAGGCACTGGCGGAATGGAACGGGCTTGGAAGCGATTTTGCGATCCGCGAAGGCCAG
TACCTGCTGATCCCGCTCAAAGATCCCAATGCCCGGCCGCCAAAGGCAGAGACGCAAGAGGCCGTGACCGCCCCAGGTCA
GGGCAGTGCGACCCCGACCCCGCCCAGCGCCACGCAGCCCTTGCCGGATGAGGATGTCAAACCCGCCGCAGAGGCCCGCA
CAGAGCCCACGCCCACGGTCAAAATCCAAGAGCCCACCCGCGCATCAGAGGCCGCGATGGCCTATCCGGTGACCGGCAAG
ATCATTCGCGCCTACTCCAAGGGCAAGAACGACGGCATCGACATCGCCGCCGCCCCCGGCAGCCCCGTGAAGGCCGCAGA
GGCCGGCACCGTCGCCGCGATCACCGCGGACTCCAACAAGGTGCCGATCATCGTGATCCGTCACGACCGCAATCTTCTGT
CGGTCTATGCCAATGTCGATGGGATCCGGGTTCAAAAGGGCGATCGGGTCAACCGCGGCCAGAACATCGCCAAGCTGCGC
GGCAGCGCCGAAGAGGCCTATGTCCACTTTGAAGTGCGCGACGGCTTTGAGAGCGTCGACCCTCTGCCCTATCTGCAATA
A

Upstream 100 bases:

>100_bases
GCGCGGCGCAGAGACCCGGTTCAGGCCCGGGCCGCCAGATACGCCGCCGCCGTCAAAGTCTCCGCCAGAACGGGGACGCC
ATTTGAGGAGAGCAAGAGAT

Downstream 100 bases:

>100_bases
CCCGCCACGATCACCCCGCCCCGCTACTTTGCGGATGCGGGCGCCTAAGACCCCCCGCGCCGAACCTCCAGGTTCGGCGC
CCGGCCCAACGGGAGCGGGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLAAACTEPLDYDLRGQLGAFNTTRAAQTATENRPAPDS
RGLITYPSYQVAVARNGDTVADLAGRVGLPAVEVARFNGVETTDPLRKGEVLVLPRRAPEASARSGTATPGGVDIASLAG
SAIDSAPSTSPNPGSVTTTTLQNTPSKPAPTRVQAGPEPVRHKVTRGETAYTIARLYQIPVKALAEWNGLGSDFAIREGQ
YLLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPSATQPLPDEDVKPAAEARTEPTPTVKIQEPTRASEAAMAYPVTGK
IIRAYSKGKNDGIDIAAAPGSPVKAAEAGTVAAITADSNKVPIIVIRHDRNLLSVYANVDGIRVQKGDRVNRGQNIAKLR
GSAEEAYVHFEVRDGFESVDPLPYLQ

Sequences:

>Translated_426_residues
MTRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLAAACTEPLDYDLRGQLGAFNTTRAAQTATENRPAPDS
RGLITYPSYQVAVARNGDTVADLAGRVGLPAVEVARFNGVETTDPLRKGEVLVLPRRAPEASARSGTATPGGVDIASLAG
SAIDSAPSTSPNPGSVTTTTLQNTPSKPAPTRVQAGPEPVRHKVTRGETAYTIARLYQIPVKALAEWNGLGSDFAIREGQ
YLLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPSATQPLPDEDVKPAAEARTEPTPTVKIQEPTRASEAAMAYPVTGK
IIRAYSKGKNDGIDIAAAPGSPVKAAEAGTVAAITADSNKVPIIVIRHDRNLLSVYANVDGIRVQKGDRVNRGQNIAKLR
GSAEEAYVHFEVRDGFESVDPLPYLQ
>Mature_425_residues
TRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLAAACTEPLDYDLRGQLGAFNTTRAAQTATENRPAPDSR
GLITYPSYQVAVARNGDTVADLAGRVGLPAVEVARFNGVETTDPLRKGEVLVLPRRAPEASARSGTATPGGVDIASLAGS
AIDSAPSTSPNPGSVTTTTLQNTPSKPAPTRVQAGPEPVRHKVTRGETAYTIARLYQIPVKALAEWNGLGSDFAIREGQY
LLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPSATQPLPDEDVKPAAEARTEPTPTVKIQEPTRASEAAMAYPVTGKI
IRAYSKGKNDGIDIAAAPGSPVKAAEAGTVAAITADSNKVPIIVIRHDRNLLSVYANVDGIRVQKGDRVNRGQNIAKLRG
SAEEAYVHFEVRDGFESVDPLPYLQ

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=232, Percent_Identity=31.8965517241379, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=27.2373540856031, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 44899; Mature: 44768

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLAAACTEPLDYDLRGQLG
CCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
AFNTTRAAQTATENRPAPDSRGLITYPSYQVAVARNGDTVADLAGRVGLPAVEVARFNGV
CCCCCHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHCCCCCCEEHHHCCCC
ETTDPLRKGEVLVLPRRAPEASARSGTATPGGVDIASLAGSAIDSAPSTSPNPGSVTTTT
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCEEEEE
LQNTPSKPAPTRVQAGPEPVRHKVTRGETAYTIARLYQIPVKALAEWNGLGSDFAIREGQ
ECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
YLLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPSATQPLPDEDVKPAAEARTEPTPTV
EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEE
KIQEPTRASEAAMAYPVTGKIIRAYSKGKNDGIDIAAAPGSPVKAAEAGTVAAITADSNK
EECCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC
VPIIVIRHDRNLLSVYANVDGIRVQKGDRVNRGQNIAKLRGSAEEAYVHFEVRDGFESVD
CEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCC
PLPYLQ
CCCCCC
>Mature Secondary Structure 
TRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLAAACTEPLDYDLRGQLG
CCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
AFNTTRAAQTATENRPAPDSRGLITYPSYQVAVARNGDTVADLAGRVGLPAVEVARFNGV
CCCCCHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHCCCCCCEEHHHCCCC
ETTDPLRKGEVLVLPRRAPEASARSGTATPGGVDIASLAGSAIDSAPSTSPNPGSVTTTT
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCEEEEE
LQNTPSKPAPTRVQAGPEPVRHKVTRGETAYTIARLYQIPVKALAEWNGLGSDFAIREGQ
ECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
YLLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPSATQPLPDEDVKPAAEARTEPTPTV
EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEE
KIQEPTRASEAAMAYPVTGKIIRAYSKGKNDGIDIAAAPGSPVKAAEAGTVAAITADSNK
EECCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC
VPIIVIRHDRNLLSVYANVDGIRVQKGDRVNRGQNIAKLRGSAEEAYVHFEVRDGFESVD
CEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCC
PLPYLQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]