| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081629
Identifier: 99081629
GI number: 99081629
Start: 1882654
End: 1883196
Strand: Direct
Name: 99081629
Synonym: TM1040_1788
Alternate gene names: NA
Gene position: 1882654-1883196 (Clockwise)
Preceding gene: 99081628
Following gene: 99081630
Centisome position: 58.82
GC content: 62.25
Gene sequence:
>543_bases ATGCTGAGCTCTTCGCGTCAGTGCCGCTGCTGCGGCGCGACCTTTGCCCAGCTTCTCAGCCTCTCCTGCGACCGGCCGGA CATCGTGCCGGGCGATCTCGAATTGCAGGACAACACGGCCGTTTTCGTCACCGAGGGCGACGTGCTGACAGAGGATTTCT GCCGTTTCGGCACCCTGCGGTTCCTGCGGGCAGTGTTGGCAATTCCGCTAGCGGATTCGCGCGGTGAAGAGTTCATTCTC GGCACTTGGGCCGGGGTGAGCGAAGAGGTCTTCAACGAATATCTCGACCTCTTCGAACTCCGTGAAACCGAGAGCATGGG CAGCCGTCCGGCGTGGCTGTCCAACCAGATCCCGCCAGACAGCAACGGCCCCCTGGCCTGCATGCTGCACATGCGCCCCG ATGGGCAATACCCGGAGCTTCAGGTCTCCGAGGTCAATCACGATCTCGCGCGGATGCAGGAGCTTGGCCTGAACCTCGAA GAGTTGCTGACCTTTCTGCACGCCTACGGCCACGACCTCGCCTCGCTGGTCTACGATTCCTGA
Upstream 100 bases:
>100_bases GGGGGCCAACACATCTTGATGGCGCTGATCCCAACAGGTCGGCGCCATTGTCTATTTGACTTTCGAAAGGGGCGCCTTCT TGGACGCGCATCTTGCCCGC
Downstream 100 bases:
>100_bases TGCATCGCACCCGCACAGGCGCAACCGACAGACCAGGACACAGCGCCCAGCAGCCTGCCCCGTGAATATCCGGCTCCTTT TTGCGCATTGCCGCCCGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVTEGDVLTEDFCRFGTLRFLRAVLAIPLADSRGEEFIL GTWAGVSEEVFNEYLDLFELRETESMGSRPAWLSNQIPPDSNGPLACMLHMRPDGQYPELQVSEVNHDLARMQELGLNLE ELLTFLHAYGHDLASLVYDS
Sequences:
>Translated_180_residues MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVTEGDVLTEDFCRFGTLRFLRAVLAIPLADSRGEEFIL GTWAGVSEEVFNEYLDLFELRETESMGSRPAWLSNQIPPDSNGPLACMLHMRPDGQYPELQVSEVNHDLARMQELGLNLE ELLTFLHAYGHDLASLVYDS >Mature_180_residues MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVTEGDVLTEDFCRFGTLRFLRAVLAIPLADSRGEEFIL GTWAGVSEEVFNEYLDLFELRETESMGSRPAWLSNQIPPDSNGPLACMLHMRPDGQYPELQVSEVNHDLARMQELGLNLE ELLTFLHAYGHDLASLVYDS
Specific function: Unknown
COG id: COG4899
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20105; Mature: 20105
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVTEGDVLTEDFCRFGTLR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHH FLRAVLAIPLADSRGEEFILGTWAGVSEEVFNEYLDLFELRETESMGSRPAWLSNQIPPD HHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SNGPLACMLHMRPDGQYPELQVSEVNHDLARMQELGLNLEELLTFLHAYGHDLASLVYDS CCCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVTEGDVLTEDFCRFGTLR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHH FLRAVLAIPLADSRGEEFILGTWAGVSEEVFNEYLDLFELRETESMGSRPAWLSNQIPPD HHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SNGPLACMLHMRPDGQYPELQVSEVNHDLARMQELGLNLEELLTFLHAYGHDLASLVYDS CCCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA