| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081561
Identifier: 99081561
GI number: 99081561
Start: 1818044
End: 1818787
Strand: Reverse
Name: 99081561
Synonym: TM1040_1720
Alternate gene names: NA
Gene position: 1818787-1818044 (Counterclockwise)
Preceding gene: 99081567
Following gene: 99081560
Centisome position: 56.82
GC content: 60.35
Gene sequence:
>744_bases ATGGCGCCGCAGTATCTGGAGACCTCAGAGGGACGACGTATCGCTTATCACAAGACCGAAGGGCAGGGTCCCTGTGTGGT GTTCCTTGGGGGGCTGAAGTCCGACATGGAAGGCACCAAGGCGGTGTTCCTTGAGGATTGGGCCAAGGCGCGCGGGCAGG CGTTCTTGCGGTTTGACTATTCCGGCCATGGAGAAAGTTCGGGGCGGTTTGAGGAGGGCTGCATCGGCGATTGGCATGCA GATACGCTTGCGGTTGTCGATGGCCTGACCGAGGGGGAGATCGTTCCTGTGGGCTCTTCGATGGGGGGCTGGCAGGCGCT GTTACTTGCCAAGGCGCGCGCGGACCGGATCAAGGGGATGGTCACAATCGCCGCCGCCCCTGATTTTACCGAGGATGGCT ATTGGGCCAATTTCACCGTGGCGCAAAAAGAAGAACTAGAGTCCCAGGGCCATGTCGAGCTGCCCAGCGATTACATGGAG CCCTATATTGTGACCAAGCGCATGGTCGAAAACGGGCGTGAAAACCTTGTGTTGCGGGAAAAGCTTGATCTGCCCTTTCC GGTGCGCTGCCTTCAGGGCACGGATGACTCGGCCGTCTCGACCGAGACGGCATTGCGGCTGTTGGAGCATGCTGACTGCG CGGATATGCGGCTGACGCTGGTGAAAGACGCCGATCACCGGTTCTCGGATGAGGCCTGCCTGGCTCTGATCGCATCGGCG GTCGAGCAGGTCTGTGCCGGATAA
Upstream 100 bases:
>100_bases CTCGCGCTCCCCGGGATATTTGGGGTTAGAAGACGGGGAATTGGCGAATCCCTCCGCCGCGTGGCATGGGAGAGAGAGCA AGATTTCTGGGAGAAAACAC
Downstream 100 bases:
>100_bases ACGAAGAAATGTTCGCAATTTGTTCCTGCTTGATGTAAGGAAAGGGCGCGCCAAGGGTTTTGGCGCGTCGTTTGTTTTTA AAGGATTGAACCATGGAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MAPQYLETSEGRRIAYHKTEGQGPCVVFLGGLKSDMEGTKAVFLEDWAKARGQAFLRFDYSGHGESSGRFEEGCIGDWHA DTLAVVDGLTEGEIVPVGSSMGGWQALLLAKARADRIKGMVTIAAAPDFTEDGYWANFTVAQKEELESQGHVELPSDYME PYIVTKRMVENGRENLVLREKLDLPFPVRCLQGTDDSAVSTETALRLLEHADCADMRLTLVKDADHRFSDEACLALIASA VEQVCAG
Sequences:
>Translated_247_residues MAPQYLETSEGRRIAYHKTEGQGPCVVFLGGLKSDMEGTKAVFLEDWAKARGQAFLRFDYSGHGESSGRFEEGCIGDWHA DTLAVVDGLTEGEIVPVGSSMGGWQALLLAKARADRIKGMVTIAAAPDFTEDGYWANFTVAQKEELESQGHVELPSDYME PYIVTKRMVENGRENLVLREKLDLPFPVRCLQGTDDSAVSTETALRLLEHADCADMRLTLVKDADHRFSDEACLALIASA VEQVCAG >Mature_246_residues APQYLETSEGRRIAYHKTEGQGPCVVFLGGLKSDMEGTKAVFLEDWAKARGQAFLRFDYSGHGESSGRFEEGCIGDWHAD TLAVVDGLTEGEIVPVGSSMGGWQALLLAKARADRIKGMVTIAAAPDFTEDGYWANFTVAQKEELESQGHVELPSDYMEP YIVTKRMVENGRENLVLREKLDLPFPVRCLQGTDDSAVSTETALRLLEHADCADMRLTLVKDADHRFSDEACLALIASAV EQVCAG
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI8923001, Length=242, Percent_Identity=32.2314049586777, Blast_Score=145, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27051; Mature: 26920
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPQYLETSEGRRIAYHKTEGQGPCVVFLGGLKSDMEGTKAVFLEDWAKARGQAFLRFDY CCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC SGHGESSGRFEEGCIGDWHADTLAVVDGLTEGEIVPVGSSMGGWQALLLAKARADRIKGM CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCEE VTIAAAPDFTEDGYWANFTVAQKEELESQGHVELPSDYMEPYIVTKRMVENGRENLVLRE EEEEECCCCCCCCCEEEEEEHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEE KLDLPFPVRCLQGTDDSAVSTETALRLLEHADCADMRLTLVKDADHRFSDEACLALIASA CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH VEQVCAG HHHHHCC >Mature Secondary Structure APQYLETSEGRRIAYHKTEGQGPCVVFLGGLKSDMEGTKAVFLEDWAKARGQAFLRFDY CCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC SGHGESSGRFEEGCIGDWHADTLAVVDGLTEGEIVPVGSSMGGWQALLLAKARADRIKGM CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCEE VTIAAAPDFTEDGYWANFTVAQKEELESQGHVELPSDYMEPYIVTKRMVENGRENLVLRE EEEEECCCCCCCCCEEEEEEHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEE KLDLPFPVRCLQGTDDSAVSTETALRLLEHADCADMRLTLVKDADHRFSDEACLALIASA CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH VEQVCAG HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA