Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081550

Identifier: 99081550

GI number: 99081550

Start: 1807873

End: 1808316

Strand: Direct

Name: 99081550

Synonym: TM1040_1709

Alternate gene names: NA

Gene position: 1807873-1808316 (Clockwise)

Preceding gene: 99081549

Following gene: 99081551

Centisome position: 56.48

GC content: 62.39

Gene sequence:

>444_bases
ATGATATTCAAGGACTTTTTGGATAAGCTATTGGCGCCTGCTCCGTCGATCTTACCAGATGAGGATGCCCGGCTCGCACT
GACGGCACTGCTGGTGCGTCTGGCGCGTTCCGACAATGTCTATTCCGACTCCGAGCGGGACCGGATCGACCGGATCCTGC
GCAGCCGCTTTGCGCTGGATGCGGGTGCAGCCCAGATCCTGCGCGAACAGGGCGAAGGGCTGGAAGCTGAGGCTCCGGAC
ACGGTCCGCTTTACCCGCGCGATCAAAGAGGTTGTCCCCTATGAGGAGCGCACCGGCGTGGTAGAGACCTTGTGGGAGGT
CGCGCTGTCGGATGGCAAGCGTGACGTCGAGGAAGACGCCCTGATCCGACTGGCGGCCAATCTTCTGGGTGTCAATGACG
TGGACAGCGCCATGGCGCGCAAACGGGCGGAGGCCCACGCATGA

Upstream 100 bases:

>100_bases
ACGCCTGCAAGGCCATGGGGCTGTCGGTGATCGACAACAAACGGGCGCGTGATCGTGCCCGCGCCAAGCTGGCCACGCAA
CCAACGGAGTAGGAAAGCGC

Downstream 100 bases:

>100_bases
TTGCCTCTTTGCCGATGTATGATCGCCCCGAAACCGCTGCTGCAAATGATGCCTTCTGGGCCGCGATCCGCGCCGAACTC
GGCCACGGGCCTGAGAGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MIFKDFLDKLLAPAPSILPDEDARLALTALLVRLARSDNVYSDSERDRIDRILRSRFALDAGAAQILREQGEGLEAEAPD
TVRFTRAIKEVVPYEERTGVVETLWEVALSDGKRDVEEDALIRLAANLLGVNDVDSAMARKRAEAHA

Sequences:

>Translated_147_residues
MIFKDFLDKLLAPAPSILPDEDARLALTALLVRLARSDNVYSDSERDRIDRILRSRFALDAGAAQILREQGEGLEAEAPD
TVRFTRAIKEVVPYEERTGVVETLWEVALSDGKRDVEEDALIRLAANLLGVNDVDSAMARKRAEAHA
>Mature_147_residues
MIFKDFLDKLLAPAPSILPDEDARLALTALLVRLARSDNVYSDSERDRIDRILRSRFALDAGAAQILREQGEGLEAEAPD
TVRFTRAIKEVVPYEERTGVVETLWEVALSDGKRDVEEDALIRLAANLLGVNDVDSAMARKRAEAHA

Specific function: Unknown

COG id: COG4103

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16331; Mature: 16331

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKDFLDKLLAPAPSILPDEDARLALTALLVRLARSDNVYSDSERDRIDRILRSRFALD
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AGAAQILREQGEGLEAEAPDTVRFTRAIKEVVPYEERTGVVETLWEVALSDGKRDVEEDA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCHHHHH
LIRLAANLLGVNDVDSAMARKRAEAHA
HHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIFKDFLDKLLAPAPSILPDEDARLALTALLVRLARSDNVYSDSERDRIDRILRSRFALD
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AGAAQILREQGEGLEAEAPDTVRFTRAIKEVVPYEERTGVVETLWEVALSDGKRDVEEDA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCHHHHH
LIRLAANLLGVNDVDSAMARKRAEAHA
HHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA