Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081528

Identifier: 99081528

GI number: 99081528

Start: 1781885

End: 1782862

Strand: Direct

Name: 99081528

Synonym: TM1040_1687

Alternate gene names: NA

Gene position: 1781885-1782862 (Clockwise)

Preceding gene: 99081527

Following gene: 99081529

Centisome position: 55.67

GC content: 55.42

Gene sequence:

>978_bases
ATGACTCTGAAAATTACAAAATCGGATGAGGTGATTGAGGTGAAGAACCTTTGTGTCACCATCTATTCCCAGCCTGGGCT
TGGCAAAACCAGCCTCGCCTTCACAGCAAGTCGCCCGCTGCTTCTGGACTTTGACAAAGGCGCTCACCGCGCCGTTGATC
GCAAAGATGTTGTGCAAGTCGAAGACTGGCGCGATGTGGCAGGCATCTCTGCAGGAGATCTCGCCGCCTACGACACCATT
GTGATCGACACTGTGGGCAAGGCGCTGGACACCCTGTCGGCTGATATCATCCGCGCGAACTCGAAACTCTCATATGGCGG
TGCCTTGAACCAGCAAGGATGGGGGCAACTTGGCGTCAGGTTTTCCGCATTTCTCAAGCTCCTGCGCAGCTTCGGCAAGG
ACGTGGTGCTGATCTCTCACATGGACGAAAAAGCGGACGGAGACGCCATCAAGGAGCGCTTGAAAATCTCAGGCGGATCC
AAGGATCTAGTGCTTACAGACAGCGATGTGATCGCACGCATCTCGATTTACAACCGCGAACGTCACCTGATCTTTTCCCC
TACTGAAACATCATTCGGAAAAGACCCGGCTAACATTGGCGCGATGCCCATTCCGGAAGCGTCGGCAGAAACATATGCCA
CCTGCCTCTCCGACATCATCACCCAGATCAAGGAAGGCATGAACGCGCTTTCCGAGGAGCAGGTGCAACGCAAGGCTGAG
ATTGATTGGTTCGCCACCAAGCTGCCTGAAATGACCAGCGCCGAGGAGATCAACGGCGTTCTGGGTCGAGCCAAGAAGGC
GGGCAAGGATATTCAGAAGATGGTGGTCGCGCGCGCGAAAGAGCTTGGCTTCGACTTCGATCCTGAAGCGAGGGAGTACG
TCGATCCGAGTGCGGCGCTTGCTGACGAATTGGACGATGAAATCCCGGAGTTTGACGATGCAGACGAGCCGGAAAGCCCA
GCTATGGCCGCCGAGTAA

Upstream 100 bases:

>100_bases
GTCGGGCGCATCACTTCGCGTCCGCAACTTCCCCGGCGGTGAGGGTTTCCTCCTCCCTAACCCGAAACCGCCGGGGCCTT
TTATTCCAAGGAGACACGAC

Downstream 100 bases:

>100_bases
AGCCACAAAGGAGAAAAGCAATGCCGCTTGATATGTCCGCCATTCAGGAAGCCTACGCTTCCCACAGTTTCGTCTACTTC
GACATTGAGACTATCCCATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTLKITKSDEVIEVKNLCVTIYSQPGLGKTSLAFTASRPLLLDFDKGAHRAVDRKDVVQVEDWRDVAGISAGDLAAYDTI
VIDTVGKALDTLSADIIRANSKLSYGGALNQQGWGQLGVRFSAFLKLLRSFGKDVVLISHMDEKADGDAIKERLKISGGS
KDLVLTDSDVIARISIYNRERHLIFSPTETSFGKDPANIGAMPIPEASAETYATCLSDIITQIKEGMNALSEEQVQRKAE
IDWFATKLPEMTSAEEINGVLGRAKKAGKDIQKMVVARAKELGFDFDPEAREYVDPSAALADELDDEIPEFDDADEPESP
AMAAE

Sequences:

>Translated_325_residues
MTLKITKSDEVIEVKNLCVTIYSQPGLGKTSLAFTASRPLLLDFDKGAHRAVDRKDVVQVEDWRDVAGISAGDLAAYDTI
VIDTVGKALDTLSADIIRANSKLSYGGALNQQGWGQLGVRFSAFLKLLRSFGKDVVLISHMDEKADGDAIKERLKISGGS
KDLVLTDSDVIARISIYNRERHLIFSPTETSFGKDPANIGAMPIPEASAETYATCLSDIITQIKEGMNALSEEQVQRKAE
IDWFATKLPEMTSAEEINGVLGRAKKAGKDIQKMVVARAKELGFDFDPEAREYVDPSAALADELDDEIPEFDDADEPESP
AMAAE
>Mature_324_residues
TLKITKSDEVIEVKNLCVTIYSQPGLGKTSLAFTASRPLLLDFDKGAHRAVDRKDVVQVEDWRDVAGISAGDLAAYDTIV
IDTVGKALDTLSADIIRANSKLSYGGALNQQGWGQLGVRFSAFLKLLRSFGKDVVLISHMDEKADGDAIKERLKISGGSK
DLVLTDSDVIARISIYNRERHLIFSPTETSFGKDPANIGAMPIPEASAETYATCLSDIITQIKEGMNALSEEQVQRKAEI
DWFATKLPEMTSAEEINGVLGRAKKAGKDIQKMVVARAKELGFDFDPEAREYVDPSAALADELDDEIPEFDDADEPESPA
MAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35402; Mature: 35271

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKITKSDEVIEVKNLCVTIYSQPGLGKTSLAFTASRPLLLDFDKGAHRAVDRKDVVQV
CEEEECCCCCEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEECCCCCHHCCCHHHCEEE
EDWRDVAGISAGDLAAYDTIVIDTVGKALDTLSADIIRANSKLSYGGALNQQGWGQLGVR
CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
FSAFLKLLRSFGKDVVLISHMDEKADGDAIKERLKISGGSKDLVLTDSDVIARISIYNRE
HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCC
RHLIFSPTETSFGKDPANIGAMPIPEASAETYATCLSDIITQIKEGMNALSEEQVQRKAE
CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDWFATKLPEMTSAEEINGVLGRAKKAGKDIQKMVVARAKELGFDFDPEAREYVDPSAAL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHH
ADELDDEIPEFDDADEPESPAMAAE
HHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLKITKSDEVIEVKNLCVTIYSQPGLGKTSLAFTASRPLLLDFDKGAHRAVDRKDVVQV
EEEECCCCCEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEECCCCCHHCCCHHHCEEE
EDWRDVAGISAGDLAAYDTIVIDTVGKALDTLSADIIRANSKLSYGGALNQQGWGQLGVR
CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
FSAFLKLLRSFGKDVVLISHMDEKADGDAIKERLKISGGSKDLVLTDSDVIARISIYNRE
HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCC
RHLIFSPTETSFGKDPANIGAMPIPEASAETYATCLSDIITQIKEGMNALSEEQVQRKAE
CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDWFATKLPEMTSAEEINGVLGRAKKAGKDIQKMVVARAKELGFDFDPEAREYVDPSAAL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHH
ADELDDEIPEFDDADEPESPAMAAE
HHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA