Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081524

Identifier: 99081524

GI number: 99081524

Start: 1779945

End: 1780214

Strand: Direct

Name: 99081524

Synonym: TM1040_1683

Alternate gene names: NA

Gene position: 1779945-1780214 (Clockwise)

Preceding gene: 99081523

Following gene: 99081525

Centisome position: 55.61

GC content: 49.63

Gene sequence:

>270_bases
ATGGCCCCTAAAAAATCACTCTTGGAGCGAATGCGCGCGAACCCTCGCGATGACTGGACAATTACCCAAGTCGAAACGCT
ATGCAAAAAAATTGGACTAGACGTCCGGAAGCCAAACGGTAGCAGTCACTACGTTGTGTCGAGCAAATACTTGCGCGACT
CACTCTGCGTGCCCTACAAGCGCCCGATTAGGGCACTATATATTAAGAACCTTGTGAGCTACTCTGACGCCCACGCCGAA
ATGCAATCTAAGGATAGCAGTAATGTCTGA

Upstream 100 bases:

>100_bases
AACATGTGGAACGTGCGCCTCAAGTGGGCCGCCCGCGTGCGCCTGCACTGGCCTGCGGAGTTTGCGAGGAAGAAGTAAAC
TTATCAAATTTTGAGGTGAG

Downstream 100 bases:

>100_bases
ATACCCCATCGTGATCGCACCGCTGCCCGATGAAGATGGCGGCGGATACATTGCACTTTATCCGGACCTTCCGGGATGCA
TGTCCGACGGAGACACTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MAPKKSLLERMRANPRDDWTITQVETLCKKIGLDVRKPNGSSHYVVSSKYLRDSLCVPYKRPIRALYIKNLVSYSDAHAE
MQSKDSSNV

Sequences:

>Translated_89_residues
MAPKKSLLERMRANPRDDWTITQVETLCKKIGLDVRKPNGSSHYVVSSKYLRDSLCVPYKRPIRALYIKNLVSYSDAHAE
MQSKDSSNV
>Mature_88_residues
APKKSLLERMRANPRDDWTITQVETLCKKIGLDVRKPNGSSHYVVSSKYLRDSLCVPYKRPIRALYIKNLVSYSDAHAEM
QSKDSSNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10200; Mature: 10069

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPKKSLLERMRANPRDDWTITQVETLCKKIGLDVRKPNGSSHYVVSSKYLRDSLCVPYK
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHCCCCCCH
RPIRALYIKNLVSYSDAHAEMQSKDSSNV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
APKKSLLERMRANPRDDWTITQVETLCKKIGLDVRKPNGSSHYVVSSKYLRDSLCVPYK
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHCCCCCCH
RPIRALYIKNLVSYSDAHAEMQSKDSSNV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA