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The map label for this gene is yubM [H]

Identifier: 99081483

GI number: 99081483

Start: 1745947

End: 1747818

Strand: Direct

Name: yubM [H]

Synonym: TM1040_1642

Alternate gene names: 99081483

Gene position: 1745947-1747818 (Clockwise)

Preceding gene: 99081482

Following gene: 99081484

Centisome position: 54.54

GC content: 59.4

Gene sequence:

>1872_bases
ATGACCAAGCACAGCCCTCTGAACCATCCCGACGCCCCGCTGCAATACCTCCCGTTGTCCGAGCTTTACTTGCACGACAT
GAACCCGCGCCAGGACACGCCTGACGACGACGTCGCAGCGATGGCGGATTCAATCACCGTGAACGGTCTCTTGCAGAACC
TTCTGGGCTATCGCGACCCCGCAAACTCCGGCGTCGGCATTGTTGCGGGTGGCCGTCGCCTGCGCGGGTTGATCCACCTA
GGCAAGAACGGCGCGCAGATGCTGGACAGCAAAGCACCTGACCTGTCGGCCATTCCCGTTCAGGTCACCGATGATGCGTT
CCTCGCCCGGGCATGGGCCGGCACGGAATCCGCAACGCAAAAACCCTTACACCCGGCGGATGAGATCCGGGCTTATGCTG
CATTGGCGGATCAGGGAAACTCGGCCGAGATGATCGCGCGCACATTTGCCCAGACCGTGCGGCACGTGAAGGGGCGCCTC
GCCTTGGCCCACCTTTGCACAGCGACGATCGAGGCACTGCGCCGGGGCGACATCACGCTTGATGTTGCCAAGGCCCTCAC
CCTCGCCCGTGATCCAGAGCAGGAGCTGGAAGTCCTGCAAGGCGCGCTCGACGGCAAAAGACAGGAGTGGTGGGTCAAGC
AGCAACTGACCGACAGCAAAGTTCGCGCGAGCAATTACAAGGCTGCGTATGTCGGTCGGGACGGCTATGTCGCCGCCGGC
GGGCGCATGCGCGATGACCTATTCGATGATGAATCCTATCTCGAGGATCCGGATATCCTGGACGCCCTCTTCGAAAAGAA
ACTTGCCGACATCGCCGAGGGTATCAAGGTGCAATTCGGCTGGAACTGGGTCAAACCACACTCGGAGTCTCACATCCCAT
ATTCACTCACGTCAAACCTGACGCAGGTGGCTGGGAAAAAGACGCCACTGTCAATGAAAGAGCAGAACGAACAGGCCGAG
CTGCAGGACAAGGAATTCCGCGAGACGCTGACACCTGCAGAGGCGAAGCGCCTGAATGAGTTAGAGTCAAAGGCGAAGCC
CTTCTGGGAAGAAGCGACTCGCGCGAAATGCGGAATATACGTCTATGTCGATCACCGCGGAAAACTGTGCATTGACGGCG
CGTACAAGGATCAAAAGAGCACCAAGAAAAACACCAGACCTGGTGATGCCGGCGCGGAAACCGACATTCCAAGCCCAAAG
CTGACGCAGGCCGGCGTCGAAGATCTTCGCAGGATCCAGCTATTGGCCTTGCAGACAGCCACCTTGGGCAAGACAGAGCT
GGTTCTGGATCTCTTCGCGTGGCAGCTCGAATGCGGCTACGCGACCTACAGTGGCCTGTTCAATATCTCCCTGACCGATC
CGCAGATCGAACCTGAGGCGGAAGGCGCATGGACCGTAGACGACGCGCTTTCCGATGGCAGCAATCAGCGGGAGCTCGGG
AGAACGCAGGGCAACTATGCCGAAAGCTTCAAGACCTTCCAAGCCAAGGGCAAAAAGCACCGCAACACGGTGCTGACCCG
TCACCTGATCCGGACAATCAACGGCCAAACCGTTAACGCGCTTGGAACGTCCCTCTTGGCCCCAATGGTCGAACCTGACA
TCCGTTCGGTCTGGACACCGGACGCCCCCACCTACTTCAGCCGGATCAGCAAGGCAGCGCTCGAAAGCCTCTGGCAGGAT
CTGGTGCTAGAGGGTCGACCCGAAGCCGACGCCGCAGACTTCAATGCCATGAGGAAGTCCGATAAGATTGAGAACCTGCA
TCGCTTGTTCAATGACGCTGACTTTCGCAAAGCTCTTCAGCTGGGGCCCGAGGCCGAGCATCGGATTGCGACCTGGCTGC
CCCCGGAGATGGAAACCGAGGCCGCACAATGA

Upstream 100 bases:

>100_bases
TTCAGGCACGATCCCTCGATGATCTGCGCGCCAAATCCTTTCAGTGGTTCGCGGATGTGATGGATTTCGCGGCCGAGCCC
GAAACATCTGGAGCCTCTTC

Downstream 100 bases:

>100_bases
ACGCTCTCGATCGCATAATAGCTGAACGCCAGCGGCAGATCTCTGTCGAAGGCTGGAACCAGGCTCATGACGACGCCCAC
ACCGGTGGAGAACTTGCGAC

Product: ParB-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 622

Protein sequence:

>623_residues
MTKHSPLNHPDAPLQYLPLSELYLHDMNPRQDTPDDDVAAMADSITVNGLLQNLLGYRDPANSGVGIVAGGRRLRGLIHL
GKNGAQMLDSKAPDLSAIPVQVTDDAFLARAWAGTESATQKPLHPADEIRAYAALADQGNSAEMIARTFAQTVRHVKGRL
ALAHLCTATIEALRRGDITLDVAKALTLARDPEQELEVLQGALDGKRQEWWVKQQLTDSKVRASNYKAAYVGRDGYVAAG
GRMRDDLFDDESYLEDPDILDALFEKKLADIAEGIKVQFGWNWVKPHSESHIPYSLTSNLTQVAGKKTPLSMKEQNEQAE
LQDKEFRETLTPAEAKRLNELESKAKPFWEEATRAKCGIYVYVDHRGKLCIDGAYKDQKSTKKNTRPGDAGAETDIPSPK
LTQAGVEDLRRIQLLALQTATLGKTELVLDLFAWQLECGYATYSGLFNISLTDPQIEPEAEGAWTVDDALSDGSNQRELG
RTQGNYAESFKTFQAKGKKHRNTVLTRHLIRTINGQTVNALGTSLLAPMVEPDIRSVWTPDAPTYFSRISKAALESLWQD
LVLEGRPEADAADFNAMRKSDKIENLHRLFNDADFRKALQLGPEAEHRIATWLPPEMETEAAQ

Sequences:

>Translated_623_residues
MTKHSPLNHPDAPLQYLPLSELYLHDMNPRQDTPDDDVAAMADSITVNGLLQNLLGYRDPANSGVGIVAGGRRLRGLIHL
GKNGAQMLDSKAPDLSAIPVQVTDDAFLARAWAGTESATQKPLHPADEIRAYAALADQGNSAEMIARTFAQTVRHVKGRL
ALAHLCTATIEALRRGDITLDVAKALTLARDPEQELEVLQGALDGKRQEWWVKQQLTDSKVRASNYKAAYVGRDGYVAAG
GRMRDDLFDDESYLEDPDILDALFEKKLADIAEGIKVQFGWNWVKPHSESHIPYSLTSNLTQVAGKKTPLSMKEQNEQAE
LQDKEFRETLTPAEAKRLNELESKAKPFWEEATRAKCGIYVYVDHRGKLCIDGAYKDQKSTKKNTRPGDAGAETDIPSPK
LTQAGVEDLRRIQLLALQTATLGKTELVLDLFAWQLECGYATYSGLFNISLTDPQIEPEAEGAWTVDDALSDGSNQRELG
RTQGNYAESFKTFQAKGKKHRNTVLTRHLIRTINGQTVNALGTSLLAPMVEPDIRSVWTPDAPTYFSRISKAALESLWQD
LVLEGRPEADAADFNAMRKSDKIENLHRLFNDADFRKALQLGPEAEHRIATWLPPEMETEAAQ
>Mature_622_residues
TKHSPLNHPDAPLQYLPLSELYLHDMNPRQDTPDDDVAAMADSITVNGLLQNLLGYRDPANSGVGIVAGGRRLRGLIHLG
KNGAQMLDSKAPDLSAIPVQVTDDAFLARAWAGTESATQKPLHPADEIRAYAALADQGNSAEMIARTFAQTVRHVKGRLA
LAHLCTATIEALRRGDITLDVAKALTLARDPEQELEVLQGALDGKRQEWWVKQQLTDSKVRASNYKAAYVGRDGYVAAGG
RMRDDLFDDESYLEDPDILDALFEKKLADIAEGIKVQFGWNWVKPHSESHIPYSLTSNLTQVAGKKTPLSMKEQNEQAEL
QDKEFRETLTPAEAKRLNELESKAKPFWEEATRAKCGIYVYVDHRGKLCIDGAYKDQKSTKKNTRPGDAGAETDIPSPKL
TQAGVEDLRRIQLLALQTATLGKTELVLDLFAWQLECGYATYSGLFNISLTDPQIEPEAEGAWTVDDALSDGSNQRELGR
TQGNYAESFKTFQAKGKKHRNTVLTRHLIRTINGQTVNALGTSLLAPMVEPDIRSVWTPDAPTYFSRISKAALESLWQDL
VLEGRPEADAADFNAMRKSDKIENLHRLFNDADFRKALQLGPEAEHRIATWLPPEMETEAAQ

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 69061; Mature: 68930

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKHSPLNHPDAPLQYLPLSELYLHDMNPRQDTPDDDVAAMADSITVNGLLQNLLGYRDP
CCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
ANSGVGIVAGGRRLRGLIHLGKNGAQMLDSKAPDLSAIPVQVTDDAFLARAWAGTESATQ
CCCCCEEEECCHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCCHHCC
KPLHPADEIRAYAALADQGNSAEMIARTFAQTVRHVKGRLALAHLCTATIEALRRGDITL
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DVAKALTLARDPEQELEVLQGALDGKRQEWWVKQQLTDSKVRASNYKAAYVGRDGYVAAG
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCCEEECC
GRMRDDLFDDESYLEDPDILDALFEKKLADIAEGIKVQFGWNWVKPHSESHIPYSLTSNL
CCCCHHCCCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCHHHHHH
TQVAGKKTPLSMKEQNEQAELQDKEFRETLTPAEAKRLNELESKAKPFWEEATRAKCGIY
HHHHCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEE
VYVDHRGKLCIDGAYKDQKSTKKNTRPGDAGAETDIPSPKLTQAGVEDLRRIQLLALQTA
EEEECCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TLGKTELVLDLFAWQLECGYATYSGLFNISLTDPQIEPEAEGAWTVDDALSDGSNQRELG
CCCHHHHHHHHHHHHHHCCEEEECCEEEEEECCCCCCCCCCCCEEHHHHHCCCCCHHHHC
RTQGNYAESFKTFQAKGKKHRNTVLTRHLIRTINGQTVNALGTSLLAPMVEPDIRSVWTP
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCC
DAPTYFSRISKAALESLWQDLVLEGRPEADAADFNAMRKSDKIENLHRLFNDADFRKALQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LGPEAEHRIATWLPPEMETEAAQ
CCCCCHHCEEECCCCCCCCCCCC
>Mature Secondary Structure 
TKHSPLNHPDAPLQYLPLSELYLHDMNPRQDTPDDDVAAMADSITVNGLLQNLLGYRDP
CCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
ANSGVGIVAGGRRLRGLIHLGKNGAQMLDSKAPDLSAIPVQVTDDAFLARAWAGTESATQ
CCCCCEEEECCHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCCHHCC
KPLHPADEIRAYAALADQGNSAEMIARTFAQTVRHVKGRLALAHLCTATIEALRRGDITL
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DVAKALTLARDPEQELEVLQGALDGKRQEWWVKQQLTDSKVRASNYKAAYVGRDGYVAAG
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCCEEECC
GRMRDDLFDDESYLEDPDILDALFEKKLADIAEGIKVQFGWNWVKPHSESHIPYSLTSNL
CCCCHHCCCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCHHHHHH
TQVAGKKTPLSMKEQNEQAELQDKEFRETLTPAEAKRLNELESKAKPFWEEATRAKCGIY
HHHHCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEE
VYVDHRGKLCIDGAYKDQKSTKKNTRPGDAGAETDIPSPKLTQAGVEDLRRIQLLALQTA
EEEECCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TLGKTELVLDLFAWQLECGYATYSGLFNISLTDPQIEPEAEGAWTVDDALSDGSNQRELG
CCCHHHHHHHHHHHHHHCCEEEECCEEEEEECCCCCCCCCCCCEEHHHHHCCCCCHHHHC
RTQGNYAESFKTFQAKGKKHRNTVLTRHLIRTINGQTVNALGTSLLAPMVEPDIRSVWTP
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCC
DAPTYFSRISKAALESLWQDLVLEGRPEADAADFNAMRKSDKIENLHRLFNDADFRKALQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LGPEAEHRIATWLPPEMETEAAQ
CCCCCHHCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]