| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081481
Identifier: 99081481
GI number: 99081481
Start: 1744698
End: 1745402
Strand: Direct
Name: 99081481
Synonym: TM1040_1640
Alternate gene names: NA
Gene position: 1744698-1745402 (Clockwise)
Preceding gene: 99081480
Following gene: 99081482
Centisome position: 54.51
GC content: 57.02
Gene sequence:
>705_bases ATGAATTTTGACTTCGATCTTCCTGCAAAGGCACTTTTTCGCGCGATGCCGATTTGCCGTGAAAACACCCGCTTCAATAT TGATGGCGTGCTGATCGATCCAGACCCGAATGGCGGCGCCTGGCTTGTCGCTACCGATGGTAAAGGCATGCTTGTCCAGT ATGATCCTGACACGAAGGTTCCTGAAAAATGCGTTGTGAAGGTGAGTGCCGCGTGGCTGACTGAGACCCGCTTCGATTAC GACATGAGCTTAATCGGCGATCTCAACGATATTCACTGGTGCGATACGCGTCTTGAGTTTTCAAAAGACACGATGACGGC GATGAGCAGCGACTTCGACATCGCTCACTGCCTAGCCGAGGCGGGGCCTGATGTATTCTGCCAGATCCGATACAACCCGA TTTCCTTTCCCGATTGGCGCAAGGCTCTGGATACGTCCGCCAATACGTCCGAACTTGCACGCCCAGTGGAACGCCAGACC GCGCTCGATACCGGATACCTCACGGATTTGATTGGATGGTCTCGTGGGTTTCAGGTCAACCCCGCCCCAGCTGGACACGC GAGACTGATCTCTTTCGTGGGCGAGCCCAATACCTTTGCCGTACTGATGCCAATGGTCGCGGATGCGACGGATCCGCTGC CGCCGCTCCTGGAACGGGCCGGGCGCGCGGACCTGATCCAAGGCCCCCAGCGCGCGGCCGAATAG
Upstream 100 bases:
>100_bases CCGCCAACGCCGAAGAAGCCCAGCGGTTTCACCAAGTGCCAAGTTTTCAAGAACTTGCAGCTGCCCGCCGCCTGTACCCG GGCTCAAAAGGAGCATCCAG
Downstream 100 bases:
>100_bases GACTGCCGGATTCCCGGCTCAGAGGTGGAGAGGGACCAGCTGCGGGGGGACGACCACACAAACGTCAAAGGTCCGCAGCC TGTGTCAAGGAACAGGCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSAAWLTETRFDY DMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQT ALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE
Sequences:
>Translated_234_residues MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSAAWLTETRFDY DMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQT ALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE >Mature_234_residues MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSAAWLTETRFDY DMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQT ALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25899; Mature: 25899
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKV CCCCCCCCHHHHHHHCCHHCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCC PEKCVVKVSAAWLTETRFDYDMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAE CHHHEEEEHHHHHHHCCCCCCHHHHCCCCCCEEECCEEECCHHHHHHHCCCCHHHHHHHH AGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQTALDTGYLTDLIGWSRGFQVN CCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC PAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE CCCCCHHHHHEECCCCCCEEEEEEHHHCCCCCCCHHHHHCCCCCHHCCCHHHCC >Mature Secondary Structure MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKV CCCCCCCCHHHHHHHCCHHCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCC PEKCVVKVSAAWLTETRFDYDMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAE CHHHEEEEHHHHHHHCCCCCCHHHHCCCCCCEEECCEEECCHHHHHHHCCCCHHHHHHHH AGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQTALDTGYLTDLIGWSRGFQVN CCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC PAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE CCCCCHHHHHEECCCCCCEEEEEEHHHCCCCCCCHHHHHCCCCCHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA