Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081481

Identifier: 99081481

GI number: 99081481

Start: 1744698

End: 1745402

Strand: Direct

Name: 99081481

Synonym: TM1040_1640

Alternate gene names: NA

Gene position: 1744698-1745402 (Clockwise)

Preceding gene: 99081480

Following gene: 99081482

Centisome position: 54.51

GC content: 57.02

Gene sequence:

>705_bases
ATGAATTTTGACTTCGATCTTCCTGCAAAGGCACTTTTTCGCGCGATGCCGATTTGCCGTGAAAACACCCGCTTCAATAT
TGATGGCGTGCTGATCGATCCAGACCCGAATGGCGGCGCCTGGCTTGTCGCTACCGATGGTAAAGGCATGCTTGTCCAGT
ATGATCCTGACACGAAGGTTCCTGAAAAATGCGTTGTGAAGGTGAGTGCCGCGTGGCTGACTGAGACCCGCTTCGATTAC
GACATGAGCTTAATCGGCGATCTCAACGATATTCACTGGTGCGATACGCGTCTTGAGTTTTCAAAAGACACGATGACGGC
GATGAGCAGCGACTTCGACATCGCTCACTGCCTAGCCGAGGCGGGGCCTGATGTATTCTGCCAGATCCGATACAACCCGA
TTTCCTTTCCCGATTGGCGCAAGGCTCTGGATACGTCCGCCAATACGTCCGAACTTGCACGCCCAGTGGAACGCCAGACC
GCGCTCGATACCGGATACCTCACGGATTTGATTGGATGGTCTCGTGGGTTTCAGGTCAACCCCGCCCCAGCTGGACACGC
GAGACTGATCTCTTTCGTGGGCGAGCCCAATACCTTTGCCGTACTGATGCCAATGGTCGCGGATGCGACGGATCCGCTGC
CGCCGCTCCTGGAACGGGCCGGGCGCGCGGACCTGATCCAAGGCCCCCAGCGCGCGGCCGAATAG

Upstream 100 bases:

>100_bases
CCGCCAACGCCGAAGAAGCCCAGCGGTTTCACCAAGTGCCAAGTTTTCAAGAACTTGCAGCTGCCCGCCGCCTGTACCCG
GGCTCAAAAGGAGCATCCAG

Downstream 100 bases:

>100_bases
GACTGCCGGATTCCCGGCTCAGAGGTGGAGAGGGACCAGCTGCGGGGGGACGACCACACAAACGTCAAAGGTCCGCAGCC
TGTGTCAAGGAACAGGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSAAWLTETRFDY
DMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQT
ALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE

Sequences:

>Translated_234_residues
MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSAAWLTETRFDY
DMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQT
ALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE
>Mature_234_residues
MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSAAWLTETRFDY
DMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQT
ALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25899; Mature: 25899

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKV
CCCCCCCCHHHHHHHCCHHCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCC
PEKCVVKVSAAWLTETRFDYDMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAE
CHHHEEEEHHHHHHHCCCCCCHHHHCCCCCCEEECCEEECCHHHHHHHCCCCHHHHHHHH
AGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQTALDTGYLTDLIGWSRGFQVN
CCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
PAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE
CCCCCHHHHHEECCCCCCEEEEEEHHHCCCCCCCHHHHHCCCCCHHCCCHHHCC
>Mature Secondary Structure
MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKV
CCCCCCCCHHHHHHHCCHHCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCC
PEKCVVKVSAAWLTETRFDYDMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAE
CHHHEEEEHHHHHHHCCCCCCHHHHCCCCCCEEECCEEECCHHHHHHHCCCCHHHHHHHH
AGPDVFCQIRYNPISFPDWRKALDTSANTSELARPVERQTALDTGYLTDLIGWSRGFQVN
CCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
PAPAGHARLISFVGEPNTFAVLMPMVADATDPLPPLLERAGRADLIQGPQRAAE
CCCCCHHHHHEECCCCCCEEEEEEHHHCCCCCCCHHHHHCCCCCHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA