| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081474
Identifier: 99081474
GI number: 99081474
Start: 1739641
End: 1740522
Strand: Reverse
Name: 99081474
Synonym: TM1040_1633
Alternate gene names: NA
Gene position: 1740522-1739641 (Counterclockwise)
Preceding gene: 99081475
Following gene: 99081473
Centisome position: 54.38
GC content: 58.16
Gene sequence:
>882_bases ATGACACTTCGACCAATCGATGTATCAGAACAGCCACCGGTCCAGGTGAAAGCGCCCGTATCCGAGCCGGAATTGCGCTG GTTAGAGATCTCCGATCTTGTCGTGAATGACCTCTACCAGCGTCCGCTTGGGGCAAAGAACTGGAGTGTTATCCGAAAAA TAGCGATCAAGTTCGATTGGTCCAAGTTTACTCCGATCACTGTTGCCCCCAGCGGCGAGGGCTGTGATAGGTTTGCGATC ATCGATGGTCAGCACCGCGTGCATGCTGCCGCCATGAGGGGGCTGGTACGCGTTCCGGCAATGGTCGCGAATATTGCGCC GCCTGAGCAGGCATCCTGTTTCGCGGCGATCAATTCGGCTCGGACCAATGTCTCGGCGTTCCATCTGTTCAAAGCTGGGC TTGCGGCGGGTGATACATCGGCGCGGATCGCTGATGCCGCTGTGAGCGCCAGCGGCTGCCGGCTCATGCCGTACAATAAG TCTGCTCGCAACCGCGAGGCCCGTGAGATCTATGCCATCGGGCTGGTGCGGGGATACACGTCACAAAAGAATGGTGCATC GATCGTGACGCGGGCATTGCGGGCATTATCCGGATCCGCATGCGCCGAGGATCCGCAGCTGTATCAAGCCCGTATTCTGC GGCCCTGGTTTGCCACCCTCTGGGATGAACCTGAGATGTGTGAGCTGAACCTCGAGGCCTTCGTGTCGAAAGCAAATCTG GTCAGTGTACGGGACCGGATCGGCGTGATGCGCGAGAGACCTGAGTTTGCGAAATGGTCTGACTACGCGCTCGCGGCAAA ATCGTTCAAGGCTCTCCTGCGCCAATCGGCGCGCAGCGGCGAGATTGGCTCATATCTTCCTTCTGAGGGAGATGAGGGAT GA
Upstream 100 bases:
>100_bases TCACCGGATTCGTGCAGCGCGGGATGGGGACGCAACTGCGCCGTTTGGCGCATCGCTTCGATGAGCTTGAAGCAGATCTT TCGACAGATGGAGATGACGC
Downstream 100 bases:
>100_bases TCGCGGGTGGTTTCGGTGGAAACGCAAATCGCCCCATGCTGAGGGCGGTCCGTTGAATGTGCAGGACGCCAAATGCTGTG AGGGCAAACCGGAGGAGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTLRPIDVSEQPPVQVKAPVSEPELRWLEISDLVVNDLYQRPLGAKNWSVIRKIAIKFDWSKFTPITVAPSGEGCDRFAI IDGQHRVHAAAMRGLVRVPAMVANIAPPEQASCFAAINSARTNVSAFHLFKAGLAAGDTSARIADAAVSASGCRLMPYNK SARNREAREIYAIGLVRGYTSQKNGASIVTRALRALSGSACAEDPQLYQARILRPWFATLWDEPEMCELNLEAFVSKANL VSVRDRIGVMRERPEFAKWSDYALAAKSFKALLRQSARSGEIGSYLPSEGDEG
Sequences:
>Translated_293_residues MTLRPIDVSEQPPVQVKAPVSEPELRWLEISDLVVNDLYQRPLGAKNWSVIRKIAIKFDWSKFTPITVAPSGEGCDRFAI IDGQHRVHAAAMRGLVRVPAMVANIAPPEQASCFAAINSARTNVSAFHLFKAGLAAGDTSARIADAAVSASGCRLMPYNK SARNREAREIYAIGLVRGYTSQKNGASIVTRALRALSGSACAEDPQLYQARILRPWFATLWDEPEMCELNLEAFVSKANL VSVRDRIGVMRERPEFAKWSDYALAAKSFKALLRQSARSGEIGSYLPSEGDEG >Mature_292_residues TLRPIDVSEQPPVQVKAPVSEPELRWLEISDLVVNDLYQRPLGAKNWSVIRKIAIKFDWSKFTPITVAPSGEGCDRFAII DGQHRVHAAAMRGLVRVPAMVANIAPPEQASCFAAINSARTNVSAFHLFKAGLAAGDTSARIADAAVSASGCRLMPYNKS ARNREAREIYAIGLVRGYTSQKNGASIVTRALRALSGSACAEDPQLYQARILRPWFATLWDEPEMCELNLEAFVSKANLV SVRDRIGVMRERPEFAKWSDYALAAKSFKALLRQSARSGEIGSYLPSEGDEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32122; Mature: 31991
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRPIDVSEQPPVQVKAPVSEPELRWLEISDLVVNDLYQRPLGAKNWSVIRKIAIKFDW CCCCCCCCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHEEECC SKFTPITVAPSGEGCDRFAIIDGQHRVHAAAMRGLVRVPAMVANIAPPEQASCFAAINSA CCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RTNVSAFHLFKAGLAAGDTSARIADAAVSASGCRLMPYNKSARNREAREIYAIGLVRGYT HCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHEEEEHHHHCCC SQKNGASIVTRALRALSGSACAEDPQLYQARILRPWFATLWDEPEMCELNLEAFVSKANL CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHH VSVRDRIGVMRERPEFAKWSDYALAAKSFKALLRQSARSGEIGSYLPSEGDEG HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TLRPIDVSEQPPVQVKAPVSEPELRWLEISDLVVNDLYQRPLGAKNWSVIRKIAIKFDW CCCCCCCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHEEECC SKFTPITVAPSGEGCDRFAIIDGQHRVHAAAMRGLVRVPAMVANIAPPEQASCFAAINSA CCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RTNVSAFHLFKAGLAAGDTSARIADAAVSASGCRLMPYNKSARNREAREIYAIGLVRGYT HCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHEEEEHHHHCCC SQKNGASIVTRALRALSGSACAEDPQLYQARILRPWFATLWDEPEMCELNLEAFVSKANL CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHH VSVRDRIGVMRERPEFAKWSDYALAAKSFKALLRQSARSGEIGSYLPSEGDEG HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA